RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6765
(246 letters)
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 265
Score = 69.8 bits (170), Expect = 7e-15
Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 26 NDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYC 85
N + + +++ + +LTD Y + ++ +G + V+ P + E+ +L+ C
Sbjct: 1 NKAFLNELARLV--GSSHLLTDPAKTARYRKGF-RSGQGDALAVVFPGSLLELWRVLKAC 57
Query: 86 NEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMN 120
+ Q NTG+ G P ++ +++
Sbjct: 58 VTADKIILMQAANTGLTEGSTPNGNDYDRDVVIIS 92
Score = 44.8 bits (105), Expect = 3e-06
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 180 SGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMN 237
G + V+ P + E+ +L+ C + Q NTG+ G P ++ +++
Sbjct: 35 QGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIIS 92
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea
mays) [TaxId: 4577]}
Length = 206
Score = 64.9 bits (157), Expect = 2e-13
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 41 DNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQK---IAVCPQGG 97
D ++ TD ++ + D+ VL P +T ++ A+L N + +G
Sbjct: 5 DGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGR 64
Query: 98 NTGVVAGGVPLYDEVIVSASLMNKILNFDEL 128
+ G V+V+ + + +
Sbjct: 65 GHS-LMGQAFAPGGVVVNMASLGDAAAPPRI 94
Score = 44.1 bits (103), Expect = 4e-06
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 180 SGKSKLVLKPKTTEEVSAILRYCNEQK---IAVCPQGGNTGVVAGGVPLYDEVIVSASLM 236
S VL P +T ++ A+L N + +G + G V+V+ + +
Sbjct: 27 SALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHS-LMGQAFAPGGVVVNMASL 85
Query: 237 NKILNFDEL 245
+
Sbjct: 86 GDAAAPPRI 94
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 236
Score = 62.8 bits (151), Expect = 2e-12
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 27 DTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKT--QEGKSKLVLKPKTTEEVSAILRY 84
+ +QKF+ +L D+ VL + D + PYN + + T E+V +++
Sbjct: 13 NKAVQKFRALL--GDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKI 70
Query: 85 CNEQKIAVCPQ 95
CNE KI +
Sbjct: 71 CNEHKIPIWTI 81
Score = 35.1 bits (79), Expect = 0.004
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 176 FDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQ 212
+ + + T E+V +++ CNE KI +
Sbjct: 45 VENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTI 81
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium
sterolicum [TaxId: 1702]}
Length = 216
Score = 55.8 bits (133), Expect = 4e-10
Identities = 14/75 (18%), Positives = 24/75 (32%)
Query: 46 TDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG 105
D + +W K + V PKT ++V + + +E + P+G G
Sbjct: 11 NDIALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLT 70
Query: 106 VPLYDEVIVSASLMN 120
V V
Sbjct: 71 VEKGANVEKVILADT 85
Score = 49.2 bits (116), Expect = 8e-08
Identities = 12/60 (20%), Positives = 21/60 (35%)
Query: 178 ELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMN 237
E+ + V PKT ++V + + +E + P+G G V V
Sbjct: 26 EIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADT 85
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
(Penicillium simplicissimum) [TaxId: 69488]}
Length = 268
Score = 50.5 bits (119), Expect = 4e-08
Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 27 DTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKS------------KLVLKPKT 74
+ IQ +I+ ++ V + + ++K ++ P+
Sbjct: 17 NEFIQDIIRIVGSE--NVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRN 74
Query: 75 TEEVSAILRYCNEQKIAVCPQGGN 98
+V +I+ N+ + P
Sbjct: 75 VADVQSIVGLANKFSFPLWPISIG 98
Score = 35.5 bits (80), Expect = 0.004
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 186 VLKPKTTEEVSAILRYCNEQKIAVCPQGGN 215
++ P+ +V +I+ N+ + P
Sbjct: 69 IVAPRNVADVQSIVGLANKFSFPLWPISIG 98
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 26.1 bits (56), Expect = 4.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 116 ASLMNKILNFDELSGNVNSMSNAL 139
S M + D SGN+ S++NA+
Sbjct: 1 GSHMPVVHVIDVESGNLQSLTNAI 24
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 218
Score = 25.6 bits (55), Expect = 5.6
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 140 VTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKIL-NFDELSGKSKL 185
+ + +L + + V G P+ A L +I +++ S+L
Sbjct: 12 LRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRL 58
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 217
Score = 25.5 bits (55), Expect = 6.1
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 136 SNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKIL 174
+ +L ++ + + GV A I+
Sbjct: 9 GERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIV 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.364
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 852,142
Number of extensions: 37057
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 14
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.4 bits)