BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6769
         (164 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A5T|A Chain A, Crystal Structure Of Mafg-Dna Complex
 pdb|3A5T|B Chain B, Crystal Structure Of Mafg-Dna Complex
          Length = 107

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)

Query: 61  TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
           T SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+ELE +K++  Q
Sbjct: 15  TXSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ 72

Query: 121 DMELMEQDCNLMREELHAYSLKCEALIKFA 150
           ++E +  +    + EL A   K EAL  FA
Sbjct: 73  EVEKLASENASXKLELDALRSKYEALQNFA 102


>pdb|2WT7|B Chain B, Crystal Structure Of The Bzip Heterodimeric Complex
           Mafb:cfos Bound To Dna
          Length = 90

 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 64/86 (74%), Gaps = 2/86 (2%)

Query: 61  TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
           ++SVR+LNR L  RG +++++I++KQ+RRTLKNRGYA SCR KR++QK  LE EK+Q  Q
Sbjct: 5   SMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ 62

Query: 121 DMELMEQDCNLMREELHAYSLKCEAL 146
            +E ++Q+ + +  E  AY +K E L
Sbjct: 63  QVEQLKQEVSRLARERDAYKVKSEKL 88


>pdb|2WTY|A Chain A, Crystal Structure Of The Homodimeric Mafb In Complex With
           The T-Mare Binding Site
 pdb|2WTY|B Chain B, Crystal Structure Of The Homodimeric Mafb In Complex With
           The T-Mare Binding Site
          Length = 97

 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 64/86 (74%), Gaps = 2/86 (2%)

Query: 61  TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
           ++SVR+LNR L  RG +++++I++KQ+RRTLKNRGYA SCR KR++QK  LE EK+Q  Q
Sbjct: 9   SMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ 66

Query: 121 DMELMEQDCNLMREELHAYSLKCEAL 146
            +E ++Q+ + +  E  AY +K E L
Sbjct: 67  QVEQLKQEVSRLARERDAYKVKSEKL 92


>pdb|4EOT|A Chain A, Crystal Structure Of The Mafa Homodimer Bound To The
           Consensus Mare
 pdb|4EOT|B Chain B, Crystal Structure Of The Mafa Homodimer Bound To The
           Consensus Mare
          Length = 95

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 61/86 (70%), Gaps = 2/86 (2%)

Query: 61  TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
           ++SVR+LNRQL  RG S+E++I++KQ+RRTLKNRGYA SCR KR++Q+  LE+EK Q   
Sbjct: 11  SMSVRELNRQL--RGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQS 68

Query: 121 DMELMEQDCNLMREELHAYSLKCEAL 146
            +E ++ +   + +E   Y  K E L
Sbjct: 69  QVEQLKLEVGRLAKERDLYKEKYEKL 94


>pdb|1K1V|A Chain A, Solution Structure Of The Dna-Binding Domain Of Mafg
          Length = 41

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 32/35 (91%), Gaps = 2/35 (5%)

Query: 61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRG 95
          T+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRG
Sbjct: 8  TMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRG 40


>pdb|16VP|A Chain A, Conserved Core Of The Herpes Simplex Virus Transcriptional
           Regulatory Protein Vp16
          Length = 366

 Score = 29.3 bits (64), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 63  SVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRI 105
           SVR L+RQ  MRG  R D+ +M   R T+ +R Y  + R+ R+
Sbjct: 140 SVRQLHRQAHMRGRDR-DLGEML--RATIADRYYRETARLARV 179


>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
           Poly-Bromodomain Containing Protein 1 (Pb1)
 pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
           Poly-Bromodomain Containing Protein 1 (Pb1)
          Length = 130

 Score = 26.2 bits (56), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 115 KSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148
           K+QEY+ ++ +E D NLM E    Y++   A+ K
Sbjct: 74  KNQEYETLDHLECDLNLMFENAKRYNVPNSAIYK 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,555,798
Number of Sequences: 62578
Number of extensions: 100823
Number of successful extensions: 259
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 14
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)