Query psy6769
Match_columns 164
No_of_seqs 113 out of 131
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 17:56:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4196|consensus 100.0 1.9E-43 4.1E-48 276.9 14.7 117 44-162 14-132 (135)
2 PF03131 bZIP_Maf: bZIP Maf tr 100.0 8.7E-33 1.9E-37 201.8 -5.5 92 54-147 1-92 (92)
3 KOG3863|consensus 99.9 4.9E-22 1.1E-26 185.4 10.4 97 51-147 456-552 (604)
4 smart00338 BRLZ basic region l 99.2 2.1E-10 4.5E-15 78.5 8.8 61 84-144 4-64 (65)
5 PF00170 bZIP_1: bZIP transcri 98.8 2.9E-08 6.3E-13 67.8 8.3 61 83-143 3-63 (64)
6 PF07716 bZIP_2: Basic region 98.4 1.4E-06 3E-11 58.1 7.5 49 86-135 6-54 (54)
7 KOG4005|consensus 98.1 2.3E-05 5E-10 68.3 10.0 54 74-131 62-115 (292)
8 KOG0837|consensus 98.0 3.4E-05 7.4E-10 67.4 8.6 70 76-145 197-266 (279)
9 KOG0709|consensus 97.7 6.2E-05 1.3E-09 69.9 6.4 90 52-142 219-315 (472)
10 KOG4343|consensus 97.6 0.00019 4E-09 68.2 7.7 63 79-141 275-337 (655)
11 KOG3584|consensus 96.9 0.0021 4.6E-08 57.5 6.0 52 82-133 288-339 (348)
12 KOG4571|consensus 96.7 0.012 2.5E-07 52.3 9.1 61 87-147 229-289 (294)
13 PF04977 DivIC: Septum formati 95.9 0.054 1.2E-06 36.9 7.1 56 106-161 17-73 (80)
14 TIGR02209 ftsL_broad cell divi 95.1 0.15 3.3E-06 35.7 7.1 52 108-160 26-78 (85)
15 PF06005 DUF904: Protein of un 95.0 0.17 3.6E-06 36.3 7.3 42 108-149 27-68 (72)
16 PF05377 FlaC_arch: Flagella a 93.7 0.57 1.2E-05 32.4 7.3 43 108-150 2-44 (55)
17 PRK00888 ftsB cell division pr 93.6 0.51 1.1E-05 35.6 7.6 55 107-161 28-83 (105)
18 PF09789 DUF2353: Uncharacteri 93.6 0.3 6.4E-06 43.9 7.3 48 100-147 127-174 (319)
19 KOG3119|consensus 93.4 0.39 8.6E-06 41.4 7.7 66 75-140 184-249 (269)
20 PF14662 CCDC155: Coiled-coil 93.1 0.58 1.3E-05 39.5 7.9 77 65-149 53-131 (193)
21 PRK15422 septal ring assembly 92.6 0.63 1.4E-05 34.4 6.6 36 114-149 40-75 (79)
22 TIGR02894 DNA_bind_RsfA transc 90.9 1.2 2.5E-05 36.8 7.1 45 107-151 105-149 (161)
23 PF02183 HALZ: Homeobox associ 90.4 1.3 2.9E-05 29.1 5.8 41 110-150 2-42 (45)
24 PF11559 ADIP: Afadin- and alp 90.4 6.9 0.00015 30.2 12.7 91 53-147 30-121 (151)
25 COG3074 Uncharacterized protei 89.2 1.8 3.9E-05 31.8 6.2 38 111-148 37-74 (79)
26 COG5509 Uncharacterized small 87.7 0.9 1.9E-05 32.4 3.7 58 44-104 7-64 (65)
27 PF04999 FtsL: Cell division p 87.6 3.8 8.2E-05 29.5 7.1 54 108-162 37-91 (97)
28 PF02403 Seryl_tRNA_N: Seryl-t 87.4 2.4 5.2E-05 31.0 6.0 83 65-147 12-101 (108)
29 PF02403 Seryl_tRNA_N: Seryl-t 87.3 9.3 0.0002 27.8 10.6 37 105-141 28-64 (108)
30 TIGR02449 conserved hypothetic 87.2 4.6 9.9E-05 28.7 7.1 43 107-149 15-57 (65)
31 PRK10884 SH3 domain-containing 87.1 17 0.00036 30.6 11.7 35 108-142 134-168 (206)
32 PF05266 DUF724: Protein of un 86.4 11 0.00025 31.2 10.2 42 106-147 131-172 (190)
33 PF06156 DUF972: Protein of un 86.1 3.6 7.8E-05 31.4 6.5 41 107-147 16-56 (107)
34 PF08537 NBP1: Fungal Nap bind 85.6 8.2 0.00018 35.0 9.5 71 85-155 122-224 (323)
35 PF10805 DUF2730: Protein of u 85.4 10 0.00022 28.4 8.6 63 74-149 30-94 (106)
36 PRK13169 DNA replication intia 84.4 4.7 0.0001 31.1 6.5 40 107-146 16-55 (110)
37 PF04102 SlyX: SlyX; InterPro 84.1 8.3 0.00018 26.9 7.2 47 107-153 5-51 (69)
38 PF02344 Myc-LZ: Myc leucine z 84.1 3.6 7.8E-05 25.8 4.7 29 122-150 3-31 (32)
39 PF06005 DUF904: Protein of un 83.9 8.7 0.00019 27.5 7.3 36 107-142 19-54 (72)
40 PF06156 DUF972: Protein of un 83.8 8 0.00017 29.5 7.5 48 106-153 8-55 (107)
41 PF05529 Bap31: B-cell recepto 82.8 11 0.00023 30.3 8.3 38 111-148 152-189 (192)
42 PRK10884 SH3 domain-containing 82.5 20 0.00043 30.1 10.1 76 63-147 90-166 (206)
43 cd04776 HTH_GnyR Helix-Turn-He 82.0 15 0.00033 27.6 8.5 78 52-138 35-112 (118)
44 TIGR03185 DNA_S_dndD DNA sulfu 82.0 19 0.00042 34.2 11.0 54 103-156 206-259 (650)
45 PRK00295 hypothetical protein; 81.8 13 0.00028 26.1 7.4 46 107-152 6-51 (68)
46 PRK02119 hypothetical protein; 81.4 14 0.00031 26.3 7.6 47 107-153 10-56 (73)
47 PF13747 DUF4164: Domain of un 81.3 11 0.00023 27.8 7.2 38 116-153 35-72 (89)
48 PRK04406 hypothetical protein; 81.2 14 0.00031 26.5 7.6 47 107-153 12-58 (75)
49 PRK11637 AmiB activator; Provi 81.2 22 0.00049 31.9 10.6 45 108-152 91-135 (428)
50 smart00806 AIP3 Actin interact 80.8 13 0.00028 34.9 9.1 63 92-154 203-277 (426)
51 PF04977 DivIC: Septum formati 80.8 6.2 0.00013 26.7 5.4 34 106-139 24-57 (80)
52 PF00170 bZIP_1: bZIP transcri 80.7 9 0.0002 25.8 6.2 34 114-147 27-60 (64)
53 PF07200 Mod_r: Modifier of ru 80.2 13 0.00029 28.5 7.7 16 59-74 1-16 (150)
54 PRK00736 hypothetical protein; 80.0 17 0.00037 25.4 7.6 46 107-152 6-51 (68)
55 PRK13169 DNA replication intia 79.9 13 0.00029 28.6 7.6 47 106-152 8-54 (110)
56 PRK04325 hypothetical protein; 79.3 18 0.00039 25.7 7.6 47 107-153 10-56 (74)
57 PRK02793 phi X174 lysis protei 79.0 19 0.00041 25.5 7.6 47 107-153 9-55 (72)
58 PLN02678 seryl-tRNA synthetase 78.9 6.3 0.00014 36.7 6.5 81 65-145 16-103 (448)
59 PF04728 LPP: Lipoprotein leuc 78.8 13 0.00028 25.8 6.5 34 108-141 5-38 (56)
60 PRK11637 AmiB activator; Provi 78.7 39 0.00084 30.4 11.3 42 107-148 83-124 (428)
61 TIGR00414 serS seryl-tRNA synt 78.7 46 0.00099 30.4 11.8 84 63-146 10-102 (418)
62 PF08317 Spc7: Spc7 kinetochor 78.6 19 0.00041 31.6 9.1 48 56-106 164-212 (325)
63 KOG0483|consensus 78.3 13 0.00029 31.3 7.7 85 50-148 53-147 (198)
64 PRK10722 hypothetical protein; 78.0 9.4 0.0002 33.5 6.9 33 120-152 176-208 (247)
65 PRK13182 racA polar chromosome 77.9 37 0.00081 27.8 10.1 103 48-159 32-151 (175)
66 PF09738 DUF2051: Double stran 76.8 16 0.00034 32.6 8.1 52 109-160 122-180 (302)
67 PF10186 Atg14: UV radiation r 76.7 41 0.00089 27.7 11.0 16 80-95 28-43 (302)
68 PRK04863 mukB cell division pr 76.6 31 0.00067 36.9 11.3 90 65-156 1037-1131(1486)
69 PF12325 TMF_TATA_bd: TATA ele 76.1 18 0.00038 28.2 7.3 45 107-151 45-92 (120)
70 PF12711 Kinesin-relat_1: Kine 75.9 3.9 8.5E-05 30.5 3.5 40 111-150 22-67 (86)
71 COG4467 Regulator of replicati 75.9 14 0.0003 29.1 6.6 45 105-149 7-51 (114)
72 PF11932 DUF3450: Protein of u 75.5 44 0.00095 28.0 10.1 66 74-145 37-102 (251)
73 PF07106 TBPIP: Tat binding pr 75.5 25 0.00055 27.7 8.2 91 53-151 68-162 (169)
74 PF03962 Mnd1: Mnd1 family; I 75.4 44 0.00096 27.4 10.3 56 100-155 104-171 (188)
75 PF05266 DUF724: Protein of un 75.0 29 0.00063 28.8 8.7 68 84-151 88-169 (190)
76 PF00038 Filament: Intermediat 74.7 45 0.00098 28.2 10.1 80 65-147 7-95 (312)
77 PLN02320 seryl-tRNA synthetase 74.7 49 0.0011 31.6 11.2 86 61-146 73-163 (502)
78 PRK10869 recombination and rep 73.6 52 0.0011 31.1 11.1 79 52-143 291-371 (553)
79 PLN02678 seryl-tRNA synthetase 72.8 68 0.0015 30.0 11.5 49 86-138 17-65 (448)
80 PRK05431 seryl-tRNA synthetase 72.7 8.9 0.00019 35.0 5.7 83 64-146 11-99 (425)
81 KOG0995|consensus 72.5 55 0.0012 32.0 11.0 51 107-157 281-331 (581)
82 TIGR00634 recN DNA repair prot 72.4 72 0.0016 29.9 11.7 53 103-155 336-393 (563)
83 smart00338 BRLZ basic region l 72.3 18 0.0004 24.2 5.9 29 107-135 34-62 (65)
84 PRK00888 ftsB cell division pr 71.6 13 0.00028 28.0 5.4 38 106-143 34-71 (105)
85 PRK05431 seryl-tRNA synthetase 71.3 84 0.0018 28.8 11.8 34 105-138 27-60 (425)
86 PF03962 Mnd1: Mnd1 family; I 71.3 57 0.0012 26.8 10.1 48 59-106 27-89 (188)
87 PF07798 DUF1640: Protein of u 70.5 54 0.0012 26.3 12.3 19 67-85 7-25 (177)
88 TIGR00414 serS seryl-tRNA synt 70.4 18 0.00039 33.0 7.1 53 85-140 12-64 (418)
89 PF04111 APG6: Autophagy prote 70.2 20 0.00044 31.6 7.2 30 106-135 64-93 (314)
90 cd01111 HTH_MerD Helix-Turn-He 70.0 32 0.00069 25.6 7.2 41 46-89 31-71 (107)
91 PF11932 DUF3450: Protein of u 69.9 36 0.00077 28.5 8.3 41 108-148 58-98 (251)
92 PF09726 Macoilin: Transmembra 69.8 24 0.00051 34.8 8.1 40 97-140 540-579 (697)
93 KOG0898|consensus 69.7 6.9 0.00015 32.0 3.8 39 53-92 26-72 (152)
94 KOG1414|consensus 69.6 0.66 1.4E-05 42.0 -2.3 37 83-119 152-191 (395)
95 PF07106 TBPIP: Tat binding pr 69.2 39 0.00084 26.6 8.0 39 110-148 97-137 (169)
96 TIGR02894 DNA_bind_RsfA transc 69.2 21 0.00046 29.5 6.6 37 110-146 101-137 (161)
97 PRK03918 chromosome segregatio 69.1 60 0.0013 31.3 10.6 27 65-93 573-599 (880)
98 PF08172 CASP_C: CASP C termin 68.7 27 0.00058 30.2 7.4 57 81-150 81-137 (248)
99 PRK09413 IS2 repressor TnpA; R 68.3 38 0.00082 25.4 7.4 87 48-144 7-102 (121)
100 PF10211 Ax_dynein_light: Axon 68.0 67 0.0014 26.4 10.2 56 15-71 17-75 (189)
101 PF11559 ADIP: Afadin- and alp 67.5 55 0.0012 25.2 10.5 58 83-147 43-100 (151)
102 PRK02195 V-type ATP synthase s 67.5 71 0.0015 26.5 9.7 67 76-155 7-74 (201)
103 cd04779 HTH_MerR-like_sg4 Heli 67.5 39 0.00084 26.4 7.5 34 52-88 36-69 (134)
104 COG2919 Septum formation initi 67.1 44 0.00096 25.4 7.6 46 115-160 59-105 (117)
105 PRK10803 tol-pal system protei 66.5 23 0.0005 30.3 6.6 42 105-146 60-101 (263)
106 PF09730 BicD: Microtubule-ass 66.2 65 0.0014 32.2 10.3 46 104-149 95-150 (717)
107 PRK04778 septation ring format 66.2 1.2E+02 0.0026 28.7 12.7 51 107-157 391-441 (569)
108 PRK00846 hypothetical protein; 66.1 49 0.0011 24.1 8.0 48 107-154 14-61 (77)
109 PF07334 IFP_35_N: Interferon- 65.8 13 0.00028 27.3 4.2 28 108-135 2-29 (76)
110 PLN02320 seryl-tRNA synthetase 65.7 30 0.00064 33.0 7.7 49 85-138 77-125 (502)
111 PF07445 priB_priC: Primosomal 65.7 32 0.0007 27.9 7.0 136 9-146 26-171 (173)
112 COG2433 Uncharacterized conser 65.7 23 0.0005 34.9 7.1 28 5-33 297-324 (652)
113 COG1579 Zn-ribbon protein, pos 65.7 54 0.0012 28.5 8.7 61 85-146 69-129 (239)
114 TIGR01242 26Sp45 26S proteasom 65.6 17 0.00036 31.8 5.7 38 110-147 3-40 (364)
115 KOG4571|consensus 65.5 17 0.00038 32.6 5.8 35 105-139 254-288 (294)
116 PF13851 GAS: Growth-arrest sp 65.4 78 0.0017 26.2 10.3 40 108-147 95-134 (201)
117 COG4839 FtsL Protein required 65.4 29 0.00063 27.5 6.4 49 111-160 65-113 (120)
118 PRK13922 rod shape-determining 65.2 24 0.00052 29.7 6.4 30 103-132 66-95 (276)
119 PRK14154 heat shock protein Gr 65.1 23 0.00049 30.1 6.2 36 110-145 56-91 (208)
120 cd04765 HTH_MlrA-like_sg2 Heli 65.1 11 0.00024 27.7 3.9 21 76-96 39-59 (99)
121 PF05615 THOC7: Tho complex su 64.7 42 0.00091 25.6 7.2 62 92-154 64-128 (139)
122 COG2433 Uncharacterized conser 64.6 60 0.0013 32.2 9.6 45 105-149 466-510 (652)
123 PF04111 APG6: Autophagy prote 64.6 75 0.0016 28.1 9.6 72 76-147 55-126 (314)
124 PF09766 FimP: Fms-interacting 64.5 34 0.00074 30.7 7.5 86 54-149 57-151 (355)
125 PRK09039 hypothetical protein; 64.1 60 0.0013 29.0 9.0 29 115-143 139-167 (343)
126 PF07544 Med9: RNA polymerase 64.1 12 0.00026 26.9 3.8 45 98-143 38-82 (83)
127 PF09766 FimP: Fms-interacting 63.8 1.1E+02 0.0024 27.4 11.2 42 107-148 102-143 (355)
128 PF08172 CASP_C: CASP C termin 63.8 36 0.00078 29.4 7.3 49 106-154 86-137 (248)
129 PF13870 DUF4201: Domain of un 63.6 73 0.0016 25.2 11.4 93 51-149 38-134 (177)
130 PTZ00096 40S ribosomal protein 63.5 12 0.00026 30.4 4.0 38 53-90 19-63 (143)
131 PF01920 Prefoldin_2: Prefoldi 63.4 41 0.00089 23.7 6.5 79 66-145 23-101 (106)
132 TIGR02449 conserved hypothetic 62.9 48 0.001 23.5 6.6 34 109-142 3-36 (65)
133 PF13815 Dzip-like_N: Iguana/D 62.6 45 0.00097 25.2 6.9 44 99-142 73-116 (118)
134 PRK15422 septal ring assembly 62.6 45 0.00097 24.7 6.6 32 116-147 21-59 (79)
135 PF01025 GrpE: GrpE; InterPro 62.6 17 0.00037 28.1 4.7 40 108-147 13-52 (165)
136 cd00632 Prefoldin_beta Prefold 62.4 47 0.001 24.3 6.8 82 65-147 23-104 (105)
137 KOG0930|consensus 62.4 23 0.00049 32.5 6.0 42 74-139 9-50 (395)
138 KOG1103|consensus 62.3 29 0.00063 32.8 6.8 98 56-153 183-285 (561)
139 PRK13923 putative spore coat p 61.9 39 0.00084 28.1 6.8 80 68-149 53-147 (170)
140 PRK14162 heat shock protein Gr 61.8 32 0.0007 28.8 6.5 39 107-145 40-78 (194)
141 PF04728 LPP: Lipoprotein leuc 61.8 39 0.00084 23.5 5.8 25 111-135 15-39 (56)
142 TIGR00219 mreC rod shape-deter 61.7 27 0.0006 30.3 6.3 28 105-132 65-92 (283)
143 PF07412 Geminin: Geminin; In 61.5 32 0.00069 29.3 6.4 48 114-161 126-176 (200)
144 PF10226 DUF2216: Uncharacteri 61.5 45 0.00097 28.4 7.3 39 52-92 6-44 (195)
145 PF08286 Spc24: Spc24 subunit 61.0 2.8 6E-05 31.7 0.0 38 110-147 3-40 (118)
146 PF10211 Ax_dynein_light: Axon 61.0 92 0.002 25.6 9.0 28 118-145 125-152 (189)
147 smart00340 HALZ homeobox assoc 60.7 28 0.00061 23.2 4.7 30 112-141 4-33 (44)
148 PF04012 PspA_IM30: PspA/IM30 60.5 47 0.001 27.0 7.1 32 58-92 26-57 (221)
149 cd04786 HTH_MerR-like_sg7 Heli 60.5 66 0.0014 24.8 7.6 31 53-86 38-68 (131)
150 PRK14139 heat shock protein Gr 60.5 35 0.00076 28.4 6.4 40 106-145 32-71 (185)
151 PF13815 Dzip-like_N: Iguana/D 60.3 61 0.0013 24.4 7.2 36 111-146 78-113 (118)
152 PF08581 Tup_N: Tup N-terminal 60.2 64 0.0014 23.5 7.3 39 107-145 26-64 (79)
153 TIGR02338 gimC_beta prefoldin, 59.9 38 0.00083 25.1 6.0 83 64-147 26-108 (110)
154 KOG3119|consensus 59.4 21 0.00046 30.9 5.1 33 105-137 221-253 (269)
155 PF07888 CALCOCO1: Calcium bin 58.9 37 0.0008 32.9 7.1 10 55-64 115-124 (546)
156 PRK14143 heat shock protein Gr 58.8 39 0.00084 29.2 6.6 28 117-144 78-105 (238)
157 PRK10803 tol-pal system protei 58.8 69 0.0015 27.4 8.1 42 107-148 55-96 (263)
158 COG4985 ABC-type phosphate tra 58.8 44 0.00096 29.8 7.0 23 122-144 223-245 (289)
159 PF02183 HALZ: Homeobox associ 58.7 39 0.00085 22.1 5.2 33 111-143 10-42 (45)
160 cd00890 Prefoldin Prefoldin is 58.6 48 0.001 24.2 6.3 38 109-146 90-127 (129)
161 PF10224 DUF2205: Predicted co 58.6 70 0.0015 23.4 7.5 45 103-147 20-64 (80)
162 PRK10328 DNA binding protein, 58.6 62 0.0013 25.7 7.2 60 94-159 15-74 (134)
163 TIGR01843 type_I_hlyD type I s 58.3 59 0.0013 28.0 7.7 44 108-151 146-189 (423)
164 PF05600 DUF773: Protein of un 58.1 1.3E+02 0.0027 28.6 10.4 96 52-152 395-492 (507)
165 KOG1760|consensus 58.1 38 0.00083 27.2 5.9 65 80-144 35-119 (131)
166 PF00038 Filament: Intermediat 57.6 1.2E+02 0.0025 25.7 11.2 36 113-148 255-290 (312)
167 PF07716 bZIP_2: Basic region 57.5 20 0.00044 23.5 3.7 19 118-136 30-48 (54)
168 COG4238 Murein lipoprotein [Ce 57.3 38 0.00082 25.1 5.4 36 108-143 41-76 (78)
169 PRK13922 rod shape-determining 56.7 99 0.0022 26.0 8.7 24 114-137 70-93 (276)
170 COG3883 Uncharacterized protei 56.6 46 0.00099 29.4 6.8 56 92-147 45-100 (265)
171 PF10883 DUF2681: Protein of u 56.5 45 0.00098 24.9 5.8 30 113-142 30-59 (87)
172 TIGR02680 conserved hypothetic 56.3 40 0.00086 35.4 7.3 50 95-145 732-781 (1353)
173 PF11365 DUF3166: Protein of u 56.2 42 0.00091 25.5 5.7 41 107-147 9-49 (96)
174 TIGR00309 V_ATPase_subD H(+)-t 56.0 1.2E+02 0.0025 25.1 9.7 66 76-154 6-72 (209)
175 PRK14158 heat shock protein Gr 55.7 50 0.0011 27.7 6.6 39 107-145 41-79 (194)
176 cd04766 HTH_HspR Helix-Turn-He 55.5 38 0.00082 24.0 5.1 33 52-86 37-69 (91)
177 TIGR02680 conserved hypothetic 55.4 1.8E+02 0.0038 30.8 11.7 43 51-98 214-261 (1353)
178 PF12128 DUF3584: Protein of u 55.4 2.1E+02 0.0046 29.6 12.2 84 61-147 448-531 (1201)
179 KOG0999|consensus 55.3 99 0.0021 30.8 9.3 66 84-149 147-223 (772)
180 COG4026 Uncharacterized protei 55.2 42 0.00092 29.8 6.3 42 106-147 156-197 (290)
181 PF13543 KSR1-SAM: SAM like do 55.2 30 0.00064 27.5 4.9 33 53-85 90-122 (129)
182 cd04790 HTH_Cfa-like_unk Helix 55.1 1E+02 0.0022 24.8 8.1 36 48-86 34-69 (172)
183 COG3074 Uncharacterized protei 55.1 76 0.0016 23.4 6.6 29 118-146 23-51 (79)
184 PF12709 Kinetocho_Slk19: Cent 55.0 55 0.0012 24.6 6.0 38 94-135 41-78 (87)
185 PRK03947 prefoldin subunit alp 55.0 72 0.0016 24.2 6.9 41 107-147 95-135 (140)
186 PF10473 CENP-F_leu_zip: Leuci 54.9 79 0.0017 25.3 7.4 30 117-146 70-99 (140)
187 PF13942 Lipoprotein_20: YfhG 54.8 66 0.0014 27.1 7.1 47 96-151 115-161 (179)
188 PF07888 CALCOCO1: Calcium bin 54.6 64 0.0014 31.3 7.9 15 80-94 151-165 (546)
189 PF09304 Cortex-I_coil: Cortex 54.5 1E+02 0.0022 24.0 7.7 33 111-143 49-81 (107)
190 PF12325 TMF_TATA_bd: TATA ele 54.5 1E+02 0.0022 24.0 10.9 17 134-150 96-112 (120)
191 PF10224 DUF2205: Predicted co 54.5 84 0.0018 23.0 7.6 46 106-151 16-61 (80)
192 KOG2264|consensus 54.2 1.5E+02 0.0033 29.8 10.4 36 111-146 112-147 (907)
193 PF07407 Seadorna_VP6: Seadorn 54.1 18 0.00038 33.7 3.9 31 105-135 31-61 (420)
194 PF11853 DUF3373: Protein of u 54.1 11 0.00023 36.0 2.6 37 121-157 32-68 (489)
195 PRK14148 heat shock protein Gr 54.0 55 0.0012 27.5 6.6 38 108-145 42-79 (195)
196 COG0172 SerS Seryl-tRNA synthe 53.7 2E+02 0.0043 27.1 11.2 89 58-146 5-101 (429)
197 PF03915 AIP3: Actin interacti 53.7 1.3E+02 0.0027 28.3 9.5 60 93-152 200-271 (424)
198 PRK03992 proteasome-activating 53.3 56 0.0012 29.2 7.0 37 111-147 13-49 (389)
199 PRK14127 cell division protein 53.0 48 0.0011 25.5 5.7 31 114-144 38-68 (109)
200 cd04775 HTH_Cfa-like Helix-Tur 52.9 87 0.0019 22.8 7.0 34 49-85 34-67 (102)
201 PF11414 Suppressor_APC: Adeno 52.6 53 0.0012 24.2 5.6 40 105-151 6-45 (84)
202 PF12711 Kinesin-relat_1: Kine 52.6 79 0.0017 23.6 6.5 44 108-151 5-51 (86)
203 PF11382 DUF3186: Protein of u 52.6 34 0.00074 30.0 5.4 37 117-153 36-72 (308)
204 PRK01203 prefoldin subunit alp 52.6 42 0.0009 26.7 5.4 41 109-149 3-43 (130)
205 COG3879 Uncharacterized protei 52.4 72 0.0016 28.0 7.3 15 142-156 97-111 (247)
206 PRK09413 IS2 repressor TnpA; R 52.2 41 0.0009 25.2 5.1 30 109-138 74-103 (121)
207 TIGR03752 conj_TIGR03752 integ 52.2 1.2E+02 0.0025 29.1 9.1 38 110-147 106-143 (472)
208 PF07200 Mod_r: Modifier of ru 52.1 74 0.0016 24.3 6.6 12 81-92 29-40 (150)
209 PF14662 CCDC155: Coiled-coil 52.0 53 0.0012 27.9 6.2 37 111-147 20-56 (193)
210 PF12709 Kinetocho_Slk19: Cent 52.0 49 0.0011 24.8 5.4 38 111-148 47-84 (87)
211 PRK14160 heat shock protein Gr 51.9 62 0.0014 27.5 6.7 39 107-145 62-100 (211)
212 PF14257 DUF4349: Domain of un 51.7 70 0.0015 26.8 7.0 35 101-135 157-191 (262)
213 PF02994 Transposase_22: L1 tr 51.7 47 0.001 29.9 6.3 51 107-157 145-195 (370)
214 KOG0612|consensus 51.3 1.9E+02 0.0041 31.1 11.0 62 78-139 471-534 (1317)
215 PHA02562 46 endonuclease subun 51.1 1.9E+02 0.0042 26.3 10.3 7 51-57 291-297 (562)
216 PF10473 CENP-F_leu_zip: Leuci 50.8 83 0.0018 25.2 6.9 41 107-147 53-93 (140)
217 PF08781 DP: Transcription fac 50.8 86 0.0019 25.3 7.0 36 107-142 2-37 (142)
218 COG1340 Uncharacterized archae 50.7 1.9E+02 0.0041 26.1 11.4 70 76-147 17-89 (294)
219 PF04012 PspA_IM30: PspA/IM30 50.5 76 0.0017 25.7 6.8 52 96-147 85-139 (221)
220 cd01109 HTH_YyaN Helix-Turn-He 50.4 99 0.0021 22.7 7.9 35 51-88 36-70 (113)
221 PF13805 Pil1: Eisosome compon 50.3 1.2E+02 0.0026 27.0 8.3 19 78-96 137-155 (271)
222 PF10506 MCC-bdg_PDZ: PDZ doma 50.1 62 0.0013 23.0 5.4 35 117-151 2-36 (67)
223 TIGR02977 phageshock_pspA phag 50.1 86 0.0019 25.9 7.1 39 107-145 100-138 (219)
224 COG2919 Septum formation initi 50.0 47 0.001 25.2 5.2 54 94-149 47-100 (117)
225 PF13600 DUF4140: N-terminal d 50.0 53 0.0012 23.6 5.3 33 114-146 71-103 (104)
226 PRK00373 V-type ATP synthase s 49.9 1.4E+02 0.0031 24.4 9.8 66 76-154 8-74 (204)
227 PRK14140 heat shock protein Gr 49.7 70 0.0015 26.8 6.5 38 108-145 39-76 (191)
228 PTZ00454 26S protease regulato 49.5 61 0.0013 29.5 6.7 37 111-147 27-63 (398)
229 PF07407 Seadorna_VP6: Seadorn 49.5 28 0.0006 32.4 4.4 54 74-147 27-82 (420)
230 PF01166 TSC22: TSC-22/dip/bun 49.5 43 0.00093 23.6 4.4 30 113-142 14-43 (59)
231 PF07558 Shugoshin_N: Shugoshi 49.4 23 0.0005 23.2 2.9 42 102-143 3-44 (46)
232 cd04769 HTH_MerR2 Helix-Turn-H 49.4 1.1E+02 0.0023 22.7 7.3 37 53-92 37-73 (116)
233 PF12936 Kri1_C: KRI1-like fam 49.4 37 0.0008 25.5 4.4 30 44-74 32-61 (93)
234 PRK02224 chromosome segregatio 49.3 2.5E+02 0.0055 27.3 11.1 24 81-104 615-638 (880)
235 PF04880 NUDE_C: NUDE protein, 49.2 16 0.00034 30.2 2.6 30 110-143 18-47 (166)
236 cd04776 HTH_GnyR Helix-Turn-He 49.1 1.1E+02 0.0024 22.9 9.4 23 74-97 35-57 (118)
237 cd04781 HTH_MerR-like_sg6 Heli 49.0 83 0.0018 23.4 6.3 35 49-86 33-67 (120)
238 COG1382 GimC Prefoldin, chaper 49.0 1.1E+02 0.0024 24.1 7.1 47 103-149 67-113 (119)
239 PRK14155 heat shock protein Gr 48.9 44 0.00096 28.3 5.3 37 109-145 16-52 (208)
240 PF07334 IFP_35_N: Interferon- 48.8 51 0.0011 24.2 4.9 26 122-147 2-27 (76)
241 PF04420 CHD5: CHD5-like prote 48.8 39 0.00084 27.0 4.7 60 80-155 48-108 (161)
242 cd00584 Prefoldin_alpha Prefol 48.8 91 0.002 23.2 6.5 42 110-151 3-44 (129)
243 COG5185 HEC1 Protein involved 48.7 1.9E+02 0.0041 28.4 9.9 40 120-159 330-369 (622)
244 cd00890 Prefoldin Prefoldin is 48.6 94 0.002 22.6 6.5 41 110-150 3-43 (129)
245 PRK03947 prefoldin subunit alp 48.4 1E+02 0.0023 23.3 6.9 45 106-150 6-50 (140)
246 TIGR02209 ftsL_broad cell divi 48.3 88 0.0019 21.5 6.3 23 109-131 34-56 (85)
247 PF04568 IATP: Mitochondrial A 48.3 1.2E+02 0.0025 23.2 7.0 46 90-142 53-98 (100)
248 TIGR02047 CadR-PbrR Cd(II)/Pb( 48.3 1.2E+02 0.0026 23.0 8.1 36 48-86 33-68 (127)
249 COG1842 PspA Phage shock prote 48.1 91 0.002 26.6 7.1 43 105-147 91-133 (225)
250 PF15188 CCDC-167: Coiled-coil 47.8 74 0.0016 23.7 5.7 40 96-135 22-65 (85)
251 PF04880 NUDE_C: NUDE protein, 47.7 10 0.00022 31.3 1.3 31 113-144 24-54 (166)
252 PF14584 DUF4446: Protein of u 47.6 1.2E+02 0.0026 24.4 7.3 36 110-145 43-78 (151)
253 KOG1962|consensus 47.4 73 0.0016 27.4 6.4 28 120-147 179-206 (216)
254 PF03961 DUF342: Protein of un 47.3 1.8E+02 0.0039 26.5 9.3 15 78-92 347-361 (451)
255 KOG3650|consensus 47.2 84 0.0018 24.7 6.2 44 105-148 62-105 (120)
256 PF09738 DUF2051: Double stran 47.2 1E+02 0.0022 27.5 7.6 47 101-147 107-153 (302)
257 PF09304 Cortex-I_coil: Cortex 47.1 1.1E+02 0.0024 23.8 6.8 35 111-145 35-69 (107)
258 KOG0250|consensus 47.1 1.4E+02 0.0031 31.3 9.4 37 108-144 396-432 (1074)
259 PRK14151 heat shock protein Gr 46.9 70 0.0015 26.3 6.0 38 108-145 22-59 (176)
260 PTZ00454 26S protease regulato 46.7 74 0.0016 28.9 6.8 35 106-140 29-63 (398)
261 PF04102 SlyX: SlyX; InterPro 46.5 84 0.0018 21.8 5.6 41 107-147 12-52 (69)
262 cd04772 HTH_TioE_rpt1 First He 46.4 84 0.0018 22.8 5.9 30 48-81 33-62 (99)
263 COG0172 SerS Seryl-tRNA synthe 46.3 56 0.0012 30.7 6.0 47 87-137 14-60 (429)
264 TIGR02977 phageshock_pspA phag 46.3 94 0.002 25.7 6.8 41 107-147 93-133 (219)
265 PF09969 DUF2203: Uncharacteri 46.3 1.3E+02 0.0027 23.3 7.1 31 128-158 44-74 (120)
266 PRK10698 phage shock protein P 46.1 93 0.002 26.1 6.8 86 58-146 27-139 (222)
267 PF06295 DUF1043: Protein of u 46.0 1.3E+02 0.0029 23.1 7.2 42 108-149 27-72 (128)
268 PRK14157 heat shock protein Gr 46.0 63 0.0014 27.9 5.9 35 111-145 82-116 (227)
269 PF14182 YgaB: YgaB-like prote 45.8 1.2E+02 0.0026 22.5 6.5 40 106-145 24-65 (79)
270 cd04770 HTH_HMRTR Helix-Turn-H 45.6 1.2E+02 0.0026 22.3 8.5 35 51-88 36-70 (123)
271 PRK13729 conjugal transfer pil 45.5 1E+02 0.0022 29.5 7.6 28 118-145 95-122 (475)
272 KOG0018|consensus 45.3 1.3E+02 0.0028 31.7 8.8 95 60-160 812-910 (1141)
273 PF15035 Rootletin: Ciliary ro 45.3 87 0.0019 25.8 6.4 36 111-146 79-114 (182)
274 cd04787 HTH_HMRTR_unk Helix-Tu 45.3 1.3E+02 0.0029 22.8 7.5 69 74-150 37-116 (133)
275 PRK14147 heat shock protein Gr 45.3 75 0.0016 26.0 6.0 36 110-145 22-57 (172)
276 PF08614 ATG16: Autophagy prot 45.2 1.6E+02 0.0036 23.7 8.3 20 64-83 80-99 (194)
277 TIGR02169 SMC_prok_A chromosom 45.2 3.1E+02 0.0068 26.9 11.3 18 18-35 618-635 (1164)
278 PRK14141 heat shock protein Gr 45.2 66 0.0014 27.3 5.8 37 109-145 34-70 (209)
279 PF02996 Prefoldin: Prefoldin 45.2 1.1E+02 0.0024 22.1 6.4 25 121-145 92-116 (120)
280 KOG4687|consensus 45.1 62 0.0013 29.7 5.9 46 102-147 156-201 (389)
281 TIGR03752 conj_TIGR03752 integ 45.1 1.1E+02 0.0023 29.4 7.7 30 120-149 109-138 (472)
282 PRK10947 global DNA-binding tr 45.1 1.4E+02 0.003 23.7 7.3 60 94-159 15-74 (135)
283 PRK04406 hypothetical protein; 45.1 1.1E+02 0.0024 21.8 6.5 47 101-147 12-59 (75)
284 PRK14153 heat shock protein Gr 45.1 61 0.0013 27.2 5.5 55 73-145 18-72 (194)
285 PRK14144 heat shock protein Gr 45.0 85 0.0018 26.6 6.4 35 111-145 50-84 (199)
286 PF13747 DUF4164: Domain of un 44.9 1.2E+02 0.0027 22.2 8.8 59 88-146 14-72 (89)
287 cd04790 HTH_Cfa-like_unk Helix 44.9 1.6E+02 0.0035 23.6 12.0 23 74-97 38-60 (172)
288 TIGR03495 phage_LysB phage lys 44.9 87 0.0019 25.0 6.1 45 114-161 62-106 (135)
289 PRK14011 prefoldin subunit alp 44.6 53 0.0012 26.2 4.9 41 110-150 7-47 (144)
290 PF09311 Rab5-bind: Rabaptin-l 44.5 13 0.00029 30.1 1.5 54 106-163 15-68 (181)
291 PF06810 Phage_GP20: Phage min 44.4 80 0.0017 25.3 5.9 48 77-130 18-68 (155)
292 KOG2264|consensus 44.4 74 0.0016 31.9 6.6 36 110-145 104-139 (907)
293 PF10046 BLOC1_2: Biogenesis o 44.2 1.3E+02 0.0028 22.2 6.6 8 98-105 33-40 (99)
294 cd08318 Death_NMPP84 Death dom 44.1 37 0.0008 24.4 3.6 43 53-98 4-52 (86)
295 PF15003 HAUS2: HAUS augmin-li 44.1 70 0.0015 28.6 6.0 22 124-145 97-118 (277)
296 COG2316 Predicted hydrolase (H 44.0 39 0.00084 28.9 4.2 40 75-114 152-191 (212)
297 PRK15396 murein lipoprotein; P 43.4 1.2E+02 0.0027 22.1 6.2 29 107-135 26-54 (78)
298 PRK10698 phage shock protein P 43.3 1.2E+02 0.0027 25.4 7.1 42 106-147 106-147 (222)
299 PF03961 DUF342: Protein of un 43.3 1.6E+02 0.0035 26.8 8.4 29 120-148 375-403 (451)
300 PF10212 TTKRSYEDQ: Predicted 43.1 1.2E+02 0.0026 29.4 7.7 54 91-145 434-487 (518)
301 KOG4196|consensus 42.6 1.2E+02 0.0025 24.6 6.5 23 53-77 43-65 (135)
302 PF04859 DUF641: Plant protein 42.4 1.6E+02 0.0035 23.4 7.2 43 107-149 81-123 (131)
303 TIGR01795 CM_mono_cladeE monof 42.4 1.4E+02 0.003 22.0 6.6 46 111-156 8-67 (94)
304 PRK15396 murein lipoprotein; P 42.3 1.2E+02 0.0026 22.1 6.0 29 114-142 47-75 (78)
305 TIGR02231 conserved hypothetic 42.3 2.8E+02 0.0061 25.6 10.6 33 115-147 140-172 (525)
306 PF06632 XRCC4: DNA double-str 42.1 1.7E+02 0.0037 26.5 8.3 9 140-148 193-201 (342)
307 COG4518 Mu-like prophage FluMu 42.1 17 0.00037 28.7 1.7 19 53-71 76-94 (122)
308 PF12368 DUF3650: Protein of u 41.9 25 0.00053 21.4 2.0 17 67-83 7-23 (28)
309 PRK14145 heat shock protein Gr 41.7 1.1E+02 0.0024 25.7 6.6 37 109-145 48-84 (196)
310 KOG1962|consensus 41.7 88 0.0019 26.9 6.1 38 111-148 149-186 (216)
311 PRK06285 chorismate mutase; Pr 41.7 1.4E+02 0.0029 21.8 7.7 48 108-155 9-70 (96)
312 TIGR02791 VirB5 P-type DNA tra 41.6 78 0.0017 26.3 5.7 30 119-148 40-69 (220)
313 PF15188 CCDC-167: Coiled-coil 41.5 1E+02 0.0022 22.9 5.7 30 64-93 21-50 (85)
314 PF15619 Lebercilin: Ciliary p 41.2 2.1E+02 0.0045 23.8 10.5 69 78-146 67-144 (194)
315 cd01109 HTH_YyaN Helix-Turn-He 41.1 1.4E+02 0.0031 21.8 10.1 22 74-96 37-58 (113)
316 PRK03992 proteasome-activating 40.9 1.1E+02 0.0024 27.4 6.8 47 109-155 4-50 (389)
317 PRK13729 conjugal transfer pil 40.8 89 0.0019 29.9 6.5 38 110-147 80-117 (475)
318 PRK00295 hypothetical protein; 40.7 1.2E+02 0.0027 21.1 6.5 41 107-147 13-53 (68)
319 COG1730 GIM5 Predicted prefold 40.5 1.7E+02 0.0036 23.6 7.2 47 107-153 7-53 (145)
320 PRK10132 hypothetical protein; 40.5 1.7E+02 0.0036 22.4 7.0 45 107-151 13-58 (108)
321 PF04420 CHD5: CHD5-like prote 40.4 98 0.0021 24.7 5.9 20 131-150 70-89 (161)
322 PRK12704 phosphodiesterase; Pr 40.3 2.8E+02 0.006 26.4 9.7 7 88-94 81-87 (520)
323 PF15070 GOLGA2L5: Putative go 40.3 2.4E+02 0.0052 27.6 9.4 36 78-119 28-63 (617)
324 TIGR00998 8a0101 efflux pump m 40.2 1.6E+02 0.0035 24.8 7.5 14 58-71 69-82 (334)
325 COG4942 Membrane-bound metallo 40.2 3E+02 0.0065 26.0 9.7 67 82-148 38-108 (420)
326 cd07627 BAR_Vps5p The Bin/Amph 40.2 1.8E+02 0.004 23.8 7.6 25 101-125 110-134 (216)
327 PF05103 DivIVA: DivIVA protei 40.1 17 0.00036 26.9 1.3 40 108-147 27-66 (131)
328 PF10174 Cast: RIM-binding pro 40.0 1.3E+02 0.0028 30.4 7.7 49 103-151 361-409 (775)
329 PRK14127 cell division protein 40.0 1E+02 0.0022 23.8 5.6 27 121-147 38-64 (109)
330 TIGR00293 prefoldin, archaeal 39.9 1.3E+02 0.0027 22.4 6.1 32 110-141 90-121 (126)
331 KOG0250|consensus 39.9 1.4E+02 0.003 31.4 8.0 50 98-147 740-789 (1074)
332 PF04156 IncA: IncA protein; 39.8 1.4E+02 0.003 23.6 6.6 23 111-133 100-122 (191)
333 PF13373 DUF2407_C: DUF2407 C- 39.7 22 0.00049 28.2 2.1 24 66-90 2-25 (140)
334 cd07429 Cby_like Chibby, a nuc 39.6 93 0.002 24.1 5.4 31 120-150 72-102 (108)
335 PF13094 CENP-Q: CENP-Q, a CEN 39.4 1.8E+02 0.004 22.6 7.5 35 106-140 41-75 (160)
336 PF12128 DUF3584: Protein of u 39.3 4.6E+02 0.01 27.3 12.5 30 64-93 756-785 (1201)
337 PRK05771 V-type ATP synthase s 39.2 95 0.0021 29.6 6.5 40 110-149 90-129 (646)
338 PRK09039 hypothetical protein; 39.2 2.8E+02 0.0061 24.7 10.1 10 6-15 14-23 (343)
339 cd04782 HTH_BltR Helix-Turn-He 39.1 1.2E+02 0.0027 21.7 5.8 34 50-86 35-68 (97)
340 PRK14161 heat shock protein Gr 39.1 1.1E+02 0.0023 25.3 6.0 32 114-145 27-58 (178)
341 PRK14146 heat shock protein Gr 39.0 1.1E+02 0.0023 26.0 6.2 38 108-145 56-93 (215)
342 PLN03085 nucleobase:cation sym 38.8 2.7E+02 0.0057 24.3 10.7 29 63-91 127-155 (221)
343 KOG4005|consensus 38.7 1.1E+02 0.0025 27.3 6.4 39 106-144 97-135 (292)
344 PF09789 DUF2353: Uncharacteri 38.7 2E+02 0.0044 26.0 8.1 68 78-145 153-228 (319)
345 PF07795 DUF1635: Protein of u 38.7 1.8E+02 0.0039 25.1 7.5 27 121-147 34-60 (214)
346 PF04201 TPD52: Tumour protein 38.6 1.1E+02 0.0024 25.4 5.9 13 74-86 24-36 (162)
347 TIGR00293 prefoldin, archaeal 38.5 1.3E+02 0.0029 22.2 6.1 41 110-150 3-43 (126)
348 PF08844 DUF1815: Domain of un 38.5 14 0.00031 28.5 0.8 28 76-103 11-38 (105)
349 KOG2483|consensus 38.5 84 0.0018 27.2 5.5 40 101-140 100-139 (232)
350 PLN03217 transcription factor 38.4 1.1E+02 0.0025 23.2 5.5 19 52-71 15-33 (93)
351 PF13035 DUF3896: Protein of u 38.4 80 0.0017 22.2 4.4 34 107-140 10-46 (61)
352 PF04325 DUF465: Protein of un 37.7 83 0.0018 20.3 4.2 21 120-140 27-47 (49)
353 PF15186 TEX13: Testis-express 37.6 2E+02 0.0043 23.7 7.2 20 124-143 128-147 (152)
354 cd01111 HTH_MerD Helix-Turn-He 37.6 1.7E+02 0.0037 21.7 8.9 68 74-146 37-106 (107)
355 PRK09973 putative outer membra 37.6 1.7E+02 0.0036 21.9 6.2 34 107-140 25-58 (85)
356 PRK14163 heat shock protein Gr 37.5 1.2E+02 0.0027 25.9 6.3 35 111-145 45-79 (214)
357 PF06160 EzrA: Septation ring 37.4 1E+02 0.0022 29.2 6.4 100 58-157 36-159 (560)
358 cd04785 HTH_CadR-PbrR-like Hel 37.3 1.8E+02 0.0039 21.9 8.2 35 50-87 35-69 (126)
359 PF15136 UPF0449: Uncharacteri 37.2 1.9E+02 0.0041 22.1 8.0 40 96-137 56-95 (97)
360 PF04350 PilO: Pilus assembly 37.0 76 0.0017 23.4 4.5 15 143-157 56-70 (144)
361 TIGR02231 conserved hypothetic 37.0 1.2E+02 0.0026 28.0 6.7 39 114-152 72-110 (525)
362 cd04789 HTH_Cfa Helix-Turn-Hel 37.0 1.6E+02 0.0036 21.4 6.9 34 48-84 33-66 (102)
363 PF08182 Pedibin: Pedibin/Hym- 36.9 76 0.0016 20.3 3.7 32 118-149 2-33 (35)
364 KOG0500|consensus 36.8 2.1E+02 0.0046 27.9 8.3 92 53-151 404-503 (536)
365 PRK04778 septation ring format 36.8 1.3E+02 0.0028 28.4 6.9 101 58-158 40-164 (569)
366 PRK09973 putative outer membra 36.7 1.3E+02 0.0029 22.4 5.7 24 118-141 29-52 (85)
367 PRK06800 fliH flagellar assemb 36.6 1.5E+02 0.0032 25.8 6.6 34 111-144 64-97 (228)
368 PF00631 G-gamma: GGL domain; 36.6 70 0.0015 21.8 3.9 35 114-151 3-37 (68)
369 cd04773 HTH_TioE_rpt2 Second H 36.5 1.7E+02 0.0037 21.5 6.8 33 52-87 37-69 (108)
370 COG4467 Regulator of replicati 36.5 1.3E+02 0.0027 23.8 5.7 49 106-154 15-65 (114)
371 cd01282 HTH_MerR-like_sg3 Heli 36.3 1.8E+02 0.0038 21.5 6.6 36 49-87 33-68 (112)
372 PF10704 DUF2508: Protein of u 36.3 1.5E+02 0.0032 20.7 6.5 25 133-157 46-70 (71)
373 PF10174 Cast: RIM-binding pro 36.2 2.3E+02 0.005 28.6 8.8 40 117-156 132-171 (775)
374 PF06103 DUF948: Bacterial pro 36.2 1.5E+02 0.0033 20.8 6.8 42 108-149 35-76 (90)
375 cd00187 TOP4c DNA Topoisomeras 36.1 2.6E+02 0.0057 26.1 8.7 18 65-82 375-392 (445)
376 PF05529 Bap31: B-cell recepto 36.1 65 0.0014 25.8 4.2 35 109-143 157-191 (192)
377 PF04645 DUF603: Protein of un 35.9 1.2E+02 0.0026 25.7 5.8 92 54-145 50-156 (181)
378 PF09730 BicD: Microtubule-ass 35.7 1.2E+02 0.0025 30.4 6.6 39 107-145 56-94 (717)
379 PF09744 Jnk-SapK_ap_N: JNK_SA 35.6 2.4E+02 0.0052 22.9 8.5 69 78-146 49-122 (158)
380 PRK14156 heat shock protein Gr 35.3 1.1E+02 0.0024 25.3 5.5 35 111-145 32-66 (177)
381 COG0359 RplI Ribosomal protein 35.0 82 0.0018 25.6 4.6 51 95-145 24-74 (148)
382 TIGR00606 rad50 rad50. This fa 34.8 3.1E+02 0.0067 28.7 9.7 42 104-145 879-920 (1311)
383 TIGR02044 CueR Cu(I)-responsiv 34.8 2E+02 0.0043 21.6 7.6 34 50-86 35-68 (127)
384 PF08614 ATG16: Autophagy prot 34.8 2.4E+02 0.0053 22.7 10.1 62 80-147 117-178 (194)
385 COG1196 Smc Chromosome segrega 34.7 4E+02 0.0088 27.5 10.4 14 20-33 613-626 (1163)
386 cd00584 Prefoldin_alpha Prefol 34.5 1.9E+02 0.0041 21.5 6.3 15 25-39 28-42 (129)
387 PRK10204 hypothetical protein; 34.5 46 0.001 23.1 2.7 28 74-104 2-29 (55)
388 PF06160 EzrA: Septation ring 34.3 2.3E+02 0.0049 26.9 8.1 55 106-160 386-441 (560)
389 TIGR01554 major_cap_HK97 phage 34.3 2.5E+02 0.0054 24.7 7.9 28 106-133 27-54 (378)
390 PRK02119 hypothetical protein; 34.2 1.7E+02 0.0037 20.7 7.2 46 102-147 11-57 (73)
391 PF07989 Microtub_assoc: Micro 34.1 1.7E+02 0.0038 20.8 8.4 62 81-142 9-72 (75)
392 KOG0488|consensus 34.1 54 0.0012 29.2 3.8 44 50-93 175-229 (309)
393 PF13720 Acetyltransf_11: Udp 34.0 81 0.0017 22.6 4.1 25 71-95 23-47 (83)
394 PRK04325 hypothetical protein; 34.0 1.7E+02 0.0037 20.7 6.5 41 107-147 17-57 (74)
395 PF12633 Adenyl_cycl_N: Adenyl 33.9 49 0.0011 28.1 3.3 26 134-159 130-155 (204)
396 COG1196 Smc Chromosome segrega 33.9 4.2E+02 0.009 27.4 10.4 21 78-98 403-423 (1163)
397 PF10234 Cluap1: Clusterin-ass 33.8 1.7E+02 0.0038 25.8 6.8 28 108-135 185-212 (267)
398 KOG3215|consensus 33.8 3.2E+02 0.007 23.8 8.2 73 74-151 68-140 (222)
399 PRK00106 hypothetical protein; 33.7 4E+02 0.0087 25.7 9.7 9 134-142 139-147 (535)
400 PF09006 Surfac_D-trimer: Lung 33.5 1.3E+02 0.0027 20.3 4.6 25 116-140 2-26 (46)
401 PF02037 SAP: SAP domain; Int 33.5 38 0.00083 20.6 2.0 18 60-77 2-19 (35)
402 PRK12704 phosphodiesterase; Pr 33.5 4.1E+02 0.0088 25.3 9.6 12 84-95 84-95 (520)
403 PF12718 Tropomyosin_1: Tropom 33.4 1.7E+02 0.0037 23.0 6.1 34 111-144 33-66 (143)
404 PF11553 DUF3231: Protein of u 33.4 80 0.0017 24.6 4.3 28 134-161 54-81 (166)
405 PRK09343 prefoldin subunit bet 33.4 2.2E+02 0.0047 21.7 7.2 70 77-147 43-112 (121)
406 PRK02793 phi X174 lysis protei 33.3 1.7E+02 0.0038 20.6 7.2 47 101-147 9-56 (72)
407 PF10458 Val_tRNA-synt_C: Valy 33.2 1.1E+02 0.0024 20.8 4.5 20 112-131 3-22 (66)
408 PHA02591 hypothetical protein; 33.2 45 0.00098 24.9 2.6 26 55-85 44-69 (83)
409 COG0497 RecN ATPase involved i 33.2 4.7E+02 0.01 25.6 10.4 98 58-159 188-322 (557)
410 PF05010 TACC: Transforming ac 33.0 2.5E+02 0.0053 23.8 7.4 41 112-152 160-200 (207)
411 PF13234 rRNA_proc-arch: rRNA- 32.9 97 0.0021 26.0 5.0 56 75-130 210-266 (268)
412 TIGR01791 CM_archaeal chorisma 32.9 1.7E+02 0.0037 20.4 7.3 44 111-154 4-61 (83)
413 PF03683 UPF0175: Uncharacteri 32.8 46 0.00099 23.4 2.5 21 57-77 41-61 (76)
414 TIGR01069 mutS2 MutS2 family p 32.8 4.9E+02 0.011 26.0 10.4 71 69-148 487-557 (771)
415 PF11853 DUF3373: Protein of u 32.4 42 0.00092 32.0 3.0 19 105-123 30-48 (489)
416 PF04822 Takusan: Takusan; In 32.4 1.3E+02 0.0027 22.3 4.9 26 120-145 19-44 (84)
417 PHA01750 hypothetical protein 32.3 1.6E+02 0.0036 21.5 5.3 29 120-148 42-70 (75)
418 PF14817 HAUS5: HAUS augmin-li 32.3 1.7E+02 0.0037 28.8 7.1 44 105-148 78-121 (632)
419 cd04777 HTH_MerR-like_sg1 Heli 32.2 2E+02 0.0043 20.9 7.9 36 49-87 32-67 (107)
420 KOG0249|consensus 32.2 1.5E+02 0.0033 30.3 6.8 44 105-148 215-258 (916)
421 PRK14160 heat shock protein Gr 32.2 1.3E+02 0.0028 25.6 5.6 29 117-145 58-86 (211)
422 cd07653 F-BAR_CIP4-like The F- 32.2 2.5E+02 0.0054 23.0 7.2 37 112-148 104-140 (251)
423 PF10168 Nup88: Nuclear pore c 32.2 2.6E+02 0.0057 27.7 8.4 53 96-148 544-600 (717)
424 PF09748 Med10: Transcription 31.9 1E+02 0.0022 23.8 4.6 34 128-161 27-68 (128)
425 TIGR01843 type_I_hlyD type I s 31.7 2.1E+02 0.0046 24.5 7.0 29 107-135 152-180 (423)
426 PF06295 DUF1043: Protein of u 31.7 92 0.002 24.0 4.3 40 111-150 37-77 (128)
427 PF02388 FemAB: FemAB family; 31.5 2E+02 0.0043 26.0 7.0 47 108-154 244-300 (406)
428 PF15294 Leu_zip: Leucine zipp 31.4 2.4E+02 0.0052 25.2 7.3 45 106-150 132-176 (278)
429 PF00261 Tropomyosin: Tropomyo 31.4 2.5E+02 0.0055 23.4 7.2 32 117-148 194-225 (237)
430 KOG4657|consensus 31.4 3.7E+02 0.008 23.8 8.7 39 103-141 83-121 (246)
431 COG4575 ElaB Uncharacterized c 31.3 1.9E+02 0.0041 22.4 5.9 44 107-150 9-53 (104)
432 PHA02047 phage lambda Rz1-like 31.3 2.4E+02 0.0051 21.9 6.3 9 153-161 82-90 (101)
433 PF13600 DUF4140: N-terminal d 31.2 1.3E+02 0.0029 21.5 4.9 26 111-136 75-100 (104)
434 PRK01203 prefoldin subunit alp 31.2 1.6E+02 0.0034 23.4 5.6 36 106-141 7-42 (130)
435 cd04770 HTH_HMRTR Helix-Turn-H 31.0 2.2E+02 0.0047 21.0 9.4 23 74-97 37-59 (123)
436 COG1340 Uncharacterized archae 31.0 4E+02 0.0087 24.0 10.3 68 78-151 33-100 (294)
437 PF04999 FtsL: Cell division p 31.0 1.9E+02 0.0041 20.5 5.6 27 107-133 43-69 (97)
438 KOG1853|consensus 30.9 1.2E+02 0.0026 27.5 5.4 54 78-133 51-104 (333)
439 TIGR02054 MerD mercuric resist 30.7 2.5E+02 0.0054 21.5 7.7 36 47-85 35-70 (120)
440 PF07028 DUF1319: Protein of u 30.7 2.5E+02 0.0055 22.4 6.6 36 108-143 48-83 (126)
441 TIGR01242 26Sp45 26S proteasom 30.6 1.6E+02 0.0034 25.8 6.0 35 106-140 6-40 (364)
442 PF13863 DUF4200: Domain of un 30.5 2.2E+02 0.0048 20.9 7.0 27 120-146 81-107 (126)
443 PF11382 DUF3186: Protein of u 30.4 1.6E+02 0.0035 25.8 6.1 40 108-147 34-73 (308)
444 cd07614 BAR_Endophilin_A2 The 30.4 2.1E+02 0.0046 24.5 6.6 77 58-141 106-182 (223)
445 PHA02109 hypothetical protein 30.3 1.5E+02 0.0033 25.5 5.7 31 120-150 193-223 (233)
446 KOG1029|consensus 30.2 5.4E+02 0.012 27.0 10.2 43 105-147 548-590 (1118)
447 TIGR01005 eps_transp_fam exopo 30.2 5.1E+02 0.011 25.0 11.6 23 126-148 375-397 (754)
448 PF04201 TPD52: Tumour protein 30.2 1.8E+02 0.004 24.1 6.0 13 118-130 34-46 (162)
449 PF04156 IncA: IncA protein; 30.2 2.7E+02 0.0059 21.9 11.3 40 110-149 148-187 (191)
450 PF13166 AAA_13: AAA domain 30.2 4.8E+02 0.01 24.7 11.9 30 63-95 371-400 (712)
451 PF10018 Med4: Vitamin-D-recep 30.2 2.2E+02 0.0047 23.1 6.4 26 111-136 34-59 (188)
452 PRK00736 hypothetical protein; 30.2 1.9E+02 0.0042 20.1 6.5 40 108-147 14-53 (68)
453 PF10146 zf-C4H2: Zinc finger- 30.1 2.6E+02 0.0056 24.0 7.1 44 105-148 45-88 (230)
454 TIGR01061 parC_Gpos DNA topois 30.0 5.1E+02 0.011 25.8 10.0 24 64-87 395-419 (738)
455 PF04871 Uso1_p115_C: Uso1 / p 30.0 2.7E+02 0.0059 21.8 11.5 54 107-160 63-117 (136)
456 PHA01750 hypothetical protein 29.9 2E+02 0.0043 21.1 5.4 35 111-145 40-74 (75)
457 PF15290 Syntaphilin: Golgi-lo 29.9 4.2E+02 0.0091 24.1 8.6 17 131-147 121-137 (305)
458 PF00690 Cation_ATPase_N: Cati 29.8 74 0.0016 21.2 3.1 33 61-95 3-38 (69)
459 KOG4643|consensus 29.8 1.7E+02 0.0036 31.0 6.8 32 116-147 187-218 (1195)
460 cd01106 HTH_TipAL-Mta Helix-Tu 29.7 2.1E+02 0.0046 20.5 7.3 66 74-149 37-102 (103)
461 PF05308 Mito_fiss_reg: Mitoch 29.7 60 0.0013 28.2 3.3 21 105-125 121-141 (253)
462 COG1579 Zn-ribbon protein, pos 29.6 3.8E+02 0.0082 23.3 9.7 39 107-145 111-149 (239)
463 PF06721 DUF1204: Protein of u 29.6 1.8E+02 0.0038 25.3 5.9 43 110-152 19-61 (228)
464 PF00261 Tropomyosin: Tropomyo 29.6 3.2E+02 0.0069 22.8 7.5 28 110-137 201-228 (237)
465 cd00632 Prefoldin_beta Prefold 29.3 1.9E+02 0.0042 21.0 5.5 14 58-71 55-68 (105)
466 PF08912 Rho_Binding: Rho Bind 29.3 2.2E+02 0.0048 20.5 5.9 38 108-145 5-45 (69)
467 TIGR01025 rpsS_arch ribosomal 29.2 81 0.0018 25.4 3.7 37 53-89 9-52 (135)
468 PF11577 NEMO: NF-kappa-B esse 29.1 2.1E+02 0.0046 20.3 5.8 18 134-151 24-41 (68)
469 KOG0996|consensus 29.1 4E+02 0.0087 28.7 9.3 66 75-142 359-427 (1293)
470 PF10805 DUF2730: Protein of u 29.0 2.5E+02 0.0053 21.0 6.8 39 109-147 45-85 (106)
471 cd07680 F-BAR_PACSIN1 The F-BA 28.9 1.6E+02 0.0035 25.5 5.8 52 94-145 140-193 (258)
472 PF08232 Striatin: Striatin fa 28.9 1.9E+02 0.004 22.6 5.6 36 112-147 24-59 (134)
473 PF05377 FlaC_arch: Flagella a 28.9 2E+02 0.0043 19.9 6.5 40 108-147 9-48 (55)
474 TIGR03185 DNA_S_dndD DNA sulfu 28.9 5.2E+02 0.011 24.7 11.5 14 27-40 340-353 (650)
475 PF04521 Viral_P18: ssRNA posi 28.8 2.7E+02 0.0059 22.1 6.5 48 92-140 59-106 (120)
476 PF07412 Geminin: Geminin; In 28.6 1.9E+02 0.0041 24.7 5.9 58 74-141 102-160 (200)
477 PF14645 Chibby: Chibby family 28.5 1.6E+02 0.0034 22.7 5.1 22 109-130 81-102 (116)
478 PF15136 UPF0449: Uncharacteri 28.5 2.1E+02 0.0046 21.9 5.6 18 129-146 66-83 (97)
479 PF01519 DUF16: Protein of unk 28.5 2.8E+02 0.0061 21.4 7.7 49 97-145 50-99 (102)
480 PF10208 Armet: Degradation ar 28.5 42 0.0009 27.6 2.0 28 50-77 95-122 (154)
481 PHA02557 22 prohead core prote 28.5 1.8E+02 0.0038 26.1 5.9 43 99-141 134-176 (271)
482 COG1842 PspA Phage shock prote 28.4 2.6E+02 0.0056 23.8 6.8 47 101-147 93-140 (225)
483 KOG2751|consensus 28.3 2.2E+02 0.0047 27.2 6.8 40 105-144 196-235 (447)
484 PF02996 Prefoldin: Prefoldin 28.2 2.3E+02 0.005 20.4 6.2 29 119-147 83-111 (120)
485 PF11020 DUF2610: Domain of un 28.2 1E+02 0.0022 23.1 3.8 34 126-159 32-70 (82)
486 PF13851 GAS: Growth-arrest sp 28.2 3.5E+02 0.0075 22.4 10.8 45 78-122 33-78 (201)
487 PRK04863 mukB cell division pr 28.1 2.5E+02 0.0055 30.3 8.0 38 125-162 1018-1055(1486)
488 TIGR01062 parC_Gneg DNA topois 28.1 5.9E+02 0.013 25.6 10.1 71 70-145 399-470 (735)
489 smart00787 Spc7 Spc7 kinetocho 28.0 2.3E+02 0.0051 25.2 6.7 42 104-145 223-264 (312)
490 PF13863 DUF4200: Domain of un 28.0 2.4E+02 0.0053 20.6 7.8 43 107-149 75-117 (126)
491 PF12777 MT: Microtubule-bindi 28.0 1.8E+02 0.0038 25.7 5.9 45 104-148 219-263 (344)
492 KOG0018|consensus 28.0 3.4E+02 0.0073 28.9 8.5 73 82-157 690-767 (1141)
493 PF09728 Taxilin: Myosin-like 28.0 4E+02 0.0087 23.5 8.2 52 101-152 252-304 (309)
494 TIGR00158 L9 ribosomal protein 28.0 88 0.0019 24.9 3.7 54 93-146 22-75 (148)
495 PF12597 DUF3767: Protein of u 27.9 1.3E+02 0.0028 23.2 4.5 37 95-131 82-118 (118)
496 PF05983 Med7: MED7 protein; 27.9 3.2E+02 0.007 22.0 8.7 59 82-144 104-162 (162)
497 PF06698 DUF1192: Protein of u 27.8 2.1E+02 0.0046 19.9 5.5 37 115-151 23-59 (59)
498 PF06637 PV-1: PV-1 protein (P 27.6 3.3E+02 0.0071 25.9 7.7 60 105-164 348-407 (442)
499 PF09744 Jnk-SapK_ap_N: JNK_SA 27.6 3.3E+02 0.0072 22.1 9.5 79 64-148 55-138 (158)
500 PF06216 RTBV_P46: Rice tungro 27.6 3.7E+02 0.008 24.6 7.9 57 101-157 55-119 (389)
No 1
>KOG4196|consensus
Probab=100.00 E-value=1.9e-43 Score=276.89 Aligned_cols=117 Identities=49% Similarity=0.692 Sum_probs=107.5
Q ss_pred CCCCCCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHH
Q psy6769 44 PPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDME 123 (164)
Q Consensus 44 ~pl~p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie 123 (164)
++.++.+...||||+||+|||||||++| +|+++|||++|||+||||||||||||||.||++|+++||+++.+|++|++
T Consensus 14 ~~~~~~~~d~lsDd~LvsmSVReLNr~L--rG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~ 91 (135)
T KOG4196|consen 14 AGESGEGGDRLSDDELVSMSVRELNRHL--RGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVE 91 (135)
T ss_pred ccCCCCCCCCcCHHHHHHhhHHHHHHHh--cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777789999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCccc
Q psy6769 124 LMEQDCNLMREELHAYSLKCEALIKFAAK--HKIHIPIELA 162 (164)
Q Consensus 124 ~L~~E~~~l~~E~d~~K~k~e~L~~~~~~--~~i~ip~~l~ 162 (164)
+|+.|++++.+|+|+||.||++|+.|+.+ .+...|...+
T Consensus 92 ~L~~e~s~~~~E~da~k~k~e~l~~~~~~~~~~~~~pS~p~ 132 (135)
T KOG4196|consen 92 KLKEENSRLRRELDAYKSKYEALQNSAVSVGASPVSPSSPE 132 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcccc
Confidence 99999999999999999999999999965 4455555443
No 2
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=99.96 E-value=8.7e-33 Score=201.85 Aligned_cols=92 Identities=47% Similarity=0.740 Sum_probs=86.1
Q ss_pred CChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 54 ISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 54 fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
||||+|++|||+|||++| +|||++|+..|||+|||+||||||++||+||++++++||.++..|..+++.|..|++.+.
T Consensus 1 ~s~eeL~~m~v~efn~~L--~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~ 78 (92)
T PF03131_consen 1 FSDEELVSMSVREFNRLL--RGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELR 78 (92)
T ss_dssp --HHHHHHS-HHHHHHHC--TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_pred CCHHHHhhCCHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy6769 134 EELHAYSLKCEALI 147 (164)
Q Consensus 134 ~E~d~~K~k~e~L~ 147 (164)
.|++.|+++|+.|.
T Consensus 79 ~e~~~lk~~~~~L~ 92 (92)
T PF03131_consen 79 QERDELKRKLEQLQ 92 (92)
T ss_dssp HCCCCCCCCHHHH-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999884
No 3
>KOG3863|consensus
Probab=99.87 E-value=4.9e-22 Score=185.44 Aligned_cols=97 Identities=23% Similarity=0.324 Sum_probs=95.3
Q ss_pred CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q psy6769 51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCN 130 (164)
Q Consensus 51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~ 130 (164)
.+||+.++|++|||.|||.+|++|-||++|+..||++|||+|||.+|||||+||++.|.+||.++..|+.+.++|.+|..
T Consensus 456 ~iPF~vd~IinLp~~dFne~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~ 535 (604)
T KOG3863|consen 456 HIPFSVDEIINLPVDDFNEMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD 535 (604)
T ss_pred cCCCchHHhcCCcHHHHHHHHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6769 131 LMREELHAYSLKCEALI 147 (164)
Q Consensus 131 ~l~~E~d~~K~k~e~L~ 147 (164)
++.+++..+|+++..|+
T Consensus 536 ~~d~~L~~~kqqls~L~ 552 (604)
T KOG3863|consen 536 ELDSTLGVMKQQLSELY 552 (604)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999987
No 4
>smart00338 BRLZ basic region leucin zipper.
Probab=99.18 E-value=2.1e-10 Score=78.47 Aligned_cols=61 Identities=28% Similarity=0.348 Sum_probs=56.5
Q ss_pred HHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 84 MKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 84 LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
.|..||+++||.+|+.||.||.+.+.+||.++..|..+.+.|..+++.+..|+..++..+.
T Consensus 4 ~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 4 EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999999999999999999999999999999988887653
No 5
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.83 E-value=2.9e-08 Score=67.79 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=50.9
Q ss_pred HHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 83 KMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 83 ~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
..|..+|+.+||.+|+.||.||...+..||..+..|..+.+.|..++..+..+.+.++...
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567899999999999999999999999999988888888888888887777777766543
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.44 E-value=1.4e-06 Score=58.09 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=41.7
Q ss_pred HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
..||. +||.+|+.||.|+-+...+||.++..|..+...|..+++.+.+|
T Consensus 6 ~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 6 RERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455 99999999999999999999999888888888888887777665
No 7
>KOG4005|consensus
Probab=98.12 E-value=2.3e-05 Score=68.27 Aligned_cols=54 Identities=30% Similarity=0.396 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNL 131 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~ 131 (164)
.|||.|| |--||.||||++||+.|-||-.--.++|.++.+|..+-+.|+.|+.+
T Consensus 62 ~HLS~EE----K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~ 115 (292)
T KOG4005|consen 62 DHLSWEE----KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDS 115 (292)
T ss_pred cccCHHH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999998 45699999999999999998765555554444444433333333333
No 8
>KOG0837|consensus
Probab=97.99 E-value=3.4e-05 Score=67.43 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 76 LSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 76 Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
..-+.-.++|-.|.++.||.+|..||+||++.+..||+.+..+..+...|..++..+++-....|++...
T Consensus 197 id~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 197 IDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVME 266 (279)
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667889999999999999999999999999999999999999999999999999988888888764
No 9
>KOG0709|consensus
Probab=97.74 E-value=6.2e-05 Score=69.88 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=71.1
Q ss_pred CCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhH-------HhHHHHHHHHH
Q psy6769 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELET-------EKSQEYQDMEL 124 (164)
Q Consensus 52 i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~-------e~~~L~~qie~ 124 (164)
+.+|+||.-.+ +.|=+.+-...-||+.|-.-||++||..||+--||-.|+||-+.++.||+ ++.+|+.+++.
T Consensus 219 L~LteeEkrLL-~kEG~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~ 297 (472)
T KOG0709|consen 219 LVLTEEEKRLL-TKEGYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE 297 (472)
T ss_pred eeccHHHHHHH-HhccCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH
Confidence 45677776555 45544444445789999999999999999999999999999999999997 56778888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6769 125 MEQDCNLMREELHAYSLK 142 (164)
Q Consensus 125 L~~E~~~l~~E~d~~K~k 142 (164)
|..++..+...+..+...
T Consensus 298 Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 298 LELSNRSLLAQLKKLQTL 315 (472)
T ss_pred HhhccHHHHHHHHHHHHH
Confidence 888888877776555543
No 10
>KOG4343|consensus
Probab=97.62 E-value=0.00019 Score=68.25 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 79 EDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 79 eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.+..-+|..-|-.|||.||+-.|+||-+...+||.....|-+|-+.|+.|++.+++.++.+-.
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 355556666699999999999999999999999999766666666666666666666655543
No 11
>KOG3584|consensus
Probab=96.90 E-value=0.0021 Score=57.51 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=41.0
Q ss_pred HHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 82 IKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 82 ~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
.-.|..=|-+|||.+|.-||.||-+.+.=||..+..|..|-..|-+|+..|+
T Consensus 288 ~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 288 ATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred hhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 3344455679999999999999999999999998877777666666665543
No 12
>KOG4571|consensus
Probab=96.71 E-value=0.012 Score=52.33 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=54.8
Q ss_pred HHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 87 RRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 87 rRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+|.+-+|+++|..=|.||..+.++|+.|...|...=++|+.+..++.+|++-+|+-+...+
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999999999999999999999999988665443
No 13
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=95.90 E-value=0.054 Score=36.93 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=46.3
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCcc
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA-KHKIHIPIEL 161 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~-~~~i~ip~~l 161 (164)
.....+..+...++.+++.++.++..+..+++.++.--+.+.++|+ ..|..-|.|.
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~ 73 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEI 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCE
Confidence 3445666778888888999999999999999998777888899999 8999888874
No 14
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=95.08 E-value=0.15 Score=35.65 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=44.0
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCc
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH-KIHIPIE 160 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~-~i~ip~~ 160 (164)
...+..+...++++++.++.|++++..|++.+.. .+.+.+.|++. |...|++
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar~~lgM~~p~~ 78 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAKKQLGMKLPDA 78 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHhcCCCCCCC
Confidence 4467777888888899999999999999988877 77799999988 9998875
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.03 E-value=0.17 Score=36.26 Aligned_cols=42 Identities=14% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
+..|..++..|..+.+.|+.|+.+++.|+.+|+.++.+|.+=
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666668899999999999999999999988754
No 16
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=93.67 E-value=0.57 Score=32.42 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=38.0
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
+.+||.+...+...+..+++|++.++.+++.+++....|..+=
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999888866553
No 17
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=93.56 E-value=0.51 Score=35.62 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=44.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCcc
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK-HKIHIPIEL 161 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~-~~i~ip~~l 161 (164)
...+++.+..++++++++++.++..+..|++.++...+.+-..|+. .|..=|.|+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEi 83 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGET 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCE
Confidence 4556777888888889999999999999999999877888888885 677666654
No 18
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.55 E-value=0.3 Score=43.86 Aligned_cols=48 Identities=23% Similarity=0.233 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 100 CRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 100 CR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
=|.+-+.|.+.+.....+|+.++..+..|++.+..|||+||.|++.|-
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN 174 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLN 174 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999975
No 19
>KOG3119|consensus
Probab=93.44 E-value=0.39 Score=41.44 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 75 GLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 75 gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.-+..+...-+.+-||=||=-+|+-||.++.+..++....+..|..|-+.|+.++.++++|+..++
T Consensus 184 ~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 184 LSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred CCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777888889999999999999887655555554444444444444444444444333
No 20
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.09 E-value=0.58 Score=39.54 Aligned_cols=77 Identities=18% Similarity=0.304 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhhh--hchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 65 RDLNRQLKMRGLSREDIIKMKQRRRTL--KNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 65 reLN~lLk~~gLs~eev~~LKqrRRtL--KNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
+.+++.+..+-.=++++..||.-=..+ .||+- +.|..++|.|...|..+++.|..|+..+..|+|.++.+
T Consensus 53 ~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L--------~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~ 124 (193)
T PF14662_consen 53 KSLQQALQKAKALEEELEDLKTLAKSLEEENRSL--------LAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 344454443334456666666554443 22222 23456899999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy6769 143 CEALIKF 149 (164)
Q Consensus 143 ~e~L~~~ 149 (164)
++.|+.-
T Consensus 125 ~~eL~~~ 131 (193)
T PF14662_consen 125 SKELATE 131 (193)
T ss_pred HHHHHHh
Confidence 9999643
No 21
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.61 E-value=0.63 Score=34.40 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=27.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
++..+....+.|..|+.+++.|.+.|+.++.+|.+-
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333445568889999999999999999988764
No 22
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.87 E-value=1.2 Score=36.80 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=38.9
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
+...|+.+...|+.+++.|..|+..+.++...|+..|+.|.+.-.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888899999999999999999999999999999986543
No 23
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.44 E-value=1.3 Score=29.06 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
.||.+-..|.+.-+.|+.+...+.+|.+.++.....|..-.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57888899999999999999999999999999999887654
No 24
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.38 E-value=6.9 Score=30.24 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=36.3
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHH-HHHHHHhHHhHHHHHHHHHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRI-EQKDELETEKSQEYQDMELMEQDCNL 131 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl-~q~~~LE~e~~~L~~qie~L~~E~~~ 131 (164)
..++..+++. ++.+|..+.=..+.-..+-...+++.+=.-...=...|+ ++...+|.+......+...+..++..
T Consensus 30 ~~~~~~vin~----i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~ 105 (151)
T PF11559_consen 30 EDNDVRVINC----IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKS 105 (151)
T ss_pred cccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655 444443333333333333333333332222222222222 23444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6769 132 MREELHAYSLKCEALI 147 (164)
Q Consensus 132 l~~E~d~~K~k~e~L~ 147 (164)
...-....|..+..+.
T Consensus 106 ~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 106 LEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4433333333333333
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.25 E-value=1.8 Score=31.80 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=31.4
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
|..|.+.++..++.|.+|+++++.|-..|..++.+|.+
T Consensus 37 l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 37 LSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677778889999999999999999999988875
No 26
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=87.72 E-value=0.9 Score=32.39 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHH
Q psy6769 44 PPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKR 104 (164)
Q Consensus 44 ~pl~p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KR 104 (164)
+|--|...-.++.|.|.-+||.|||... ++=++||.++|..|-+=||--.|++.=.+|
T Consensus 7 d~~kka~~~~i~~d~LsllsV~El~eRI---alLq~EIeRlkAe~~kK~~srsAAeaLFrr 64 (65)
T COG5509 7 DAEKKAFGHEIGNDALSLLSVAELEERI---ALLQAEIERLKAELAKKKASRSAAEALFRR 64 (65)
T ss_pred cccccccccccchhHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHhhhccHHHHHHHHhc
Confidence 3444555668888999999999999976 777999999999999988877777765554
No 27
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=87.56 E-value=3.8 Score=29.47 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=40.6
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCccc
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA-KHKIHIPIELA 162 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~-~~~i~ip~~l~ 162 (164)
...+..+..++..+.++|..|+.++.-|...++. .+...+.|. +.|+.-|+.=+
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~-~~rIe~iA~~~LgM~~P~~~q 91 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSS-PSRIERIAREKLGMVPPEPDQ 91 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHcCCCCCCCCCc
Confidence 3456666777788888888888888888877765 677778888 55988887543
No 28
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=87.38 E-value=2.4 Score=30.97 Aligned_cols=83 Identities=17% Similarity=0.328 Sum_probs=52.4
Q ss_pred HHHHHHHHhCC---CCHHHHHHHHHHHhhhhchHHHHhhHHHHHH-HHHHHhH---HhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 65 RDLNRQLKMRG---LSREDIIKMKQRRRTLKNRGYAASCRIKRIE-QKDELET---EKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 65 reLN~lLk~~g---Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~-q~~~LE~---e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
..+-..++.+| ..-+++..+-+.||.++...=.-..+.+.+. ++-.+-. +...|..+...++.++..+..+.+
T Consensus 12 e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~ 91 (108)
T PF02403_consen 12 EEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLK 91 (108)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555665 3456777788888888877776666666665 3344433 455666666666666666666666
Q ss_pred HHHHHHHHHH
Q psy6769 138 AYSLKCEALI 147 (164)
Q Consensus 138 ~~K~k~e~L~ 147 (164)
.+..+++.+.
T Consensus 92 ~~e~~l~~~l 101 (108)
T PF02403_consen 92 ELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 29
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=87.35 E-value=9.3 Score=27.82 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=29.5
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
++++..|-.+...+..+++.|+.+.+.+.+++...+.
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 7788888888888888888888888888877766655
No 30
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=87.20 E-value=4.6 Score=28.69 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=34.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
-...|..|+..|..+...+..|...+..-.+.-.+|++++..=
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788888888888888888888888888888888886543
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.14 E-value=17 Score=30.57 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=20.4
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
+.+|+.++.+|..+++.++.|+..+..+.|..+..
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666666666666666666655555555543
No 32
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.43 E-value=11 Score=31.19 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=24.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+.+.+||....+|+.+...+..++.....|+..+|..++++.
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~ 172 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALK 172 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666655555555555556666655555554
No 33
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=86.10 E-value=3.6 Score=31.41 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=21.8
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++..|-.+...|..++..|-.|++++.-|.+.++.++..+.
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555555555555443
No 34
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=85.55 E-value=8.2 Score=35.02 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHhhhhchHHHHhhHHHHHHHH--------------------------------HHHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 85 KQRRRTLKNRGYAASCRIKRIEQK--------------------------------DELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 85 KqrRRtLKNRgYAQnCR~KRl~q~--------------------------------~~LE~e~~~L~~qie~L~~E~~~l 132 (164)
+..|+++|+|.....--+||+.++ --|..++.+|..++..+..|+..+
T Consensus 122 ~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~ 201 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEIT 201 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677766666666666554 345555666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Q psy6769 133 REELHAYSLKCEALIKFAAKHKI 155 (164)
Q Consensus 133 ~~E~d~~K~k~e~L~~~~~~~~i 155 (164)
.+.++--+.|+.=|..+..+.+|
T Consensus 202 ~k~L~faqekn~LlqslLddani 224 (323)
T PF08537_consen 202 KKDLKFAQEKNALLQSLLDDANI 224 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 77777777777778888877765
No 35
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.38 E-value=10 Score=28.45 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQE--YQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L--~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
.-.+++++..+.++-.... +|+ ..+|+++..| ..++++|+-+++++.-+++.+..+++.+.+.
T Consensus 30 ~~a~~~~~~~l~~~~~~~~----------~Rl---~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 30 TYAKREDIEKLEERLDEHD----------RRL---QALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred hhccHHHHHHHHHHHHHHH----------HHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456777777766655433 233 4578888888 8888888888888888888888888776543
No 36
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=84.39 E-value=4.7 Score=31.12 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=23.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
++..+-.+...|..++..|-.|+.++.-|-+.++.+++.+
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555666666666666666666666666654
No 37
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=84.10 E-value=8.3 Score=26.86 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=35.1
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
.+.+||.....+..-++.|...+.+-.++++.++..+..|..-.++.
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888888888888888877554443
No 38
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=84.09 E-value=3.6 Score=25.80 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 122 MELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 122 ie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
=.+|..|++.+++.+..+|.+++.|.+-|
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35777888888888888999998887543
No 39
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.95 E-value=8.7 Score=27.45 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=13.8
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
.+..|+.++..|..+-..|..++..+..|...+++.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344433333
No 40
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=83.78 E-value=8 Score=29.50 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=43.7
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
+++..||.....+..++..|+.++..+..|-..++-..+.|.......
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999876653
No 41
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=82.78 E-value=11 Score=30.30 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=32.4
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.+.+...+..++++|+.|++....|.+++|.+.+.|..
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566778888999999999999999999999998864
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.50 E-value=20 Score=30.12 Aligned_cols=76 Identities=11% Similarity=0.160 Sum_probs=40.6
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHH-HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 63 SVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQ-KDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 63 sVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q-~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
|+++....| +.|+..++++-....+. -+-|...+++ ....++....|..+-++|++|++.++.+++.+++
T Consensus 90 ~~~~rlp~l------e~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 90 SLRTRVPDL------ENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred cHHHHHHHH------HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444 34556565554444432 1122222222 3344555555666666667777777777777777
Q ss_pred HHHHHH
Q psy6769 142 KCEALI 147 (164)
Q Consensus 142 k~e~L~ 147 (164)
+.+.+.
T Consensus 161 ~~~~~~ 166 (206)
T PRK10884 161 QLDDKQ 166 (206)
T ss_pred HHHHHH
Confidence 776665
No 43
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=82.04 E-value=15 Score=27.64 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=38.9
Q ss_pred CCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q psy6769 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNL 131 (164)
Q Consensus 52 i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~ 131 (164)
-.+|++++..+.. . ..|+..|+|=+++..+=+...... .-.+.|+ +....|+.....|..+++.|..-.+.
T Consensus 35 R~Y~~~~l~~l~~--I-~~lr~~G~~L~~I~~~l~~~~~~~--~~~~~~~----~~~~~l~~~~~~l~~~~~~l~~~~~~ 105 (118)
T cd04776 35 RVYSRRDRARLKL--I-LRGKRLGFSLEEIRELLDLYDPPG--GNRKQLE----KMLEKIEKRRAELEQQRRDIDAALAE 105 (118)
T ss_pred cccCHHHHHHHHH--H-HHHHHCCCCHHHHHHHHHhhccCC--chHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677877766531 1 235668999888877665543322 1111121 12334444444444444444444444
Q ss_pred HHHHHHH
Q psy6769 132 MREELHA 138 (164)
Q Consensus 132 l~~E~d~ 138 (164)
+...++.
T Consensus 106 L~~~~~~ 112 (118)
T cd04776 106 LDAAEER 112 (118)
T ss_pred HHHHHHH
Confidence 4444333
No 44
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.00 E-value=19 Score=34.20 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=42.2
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy6769 103 KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIH 156 (164)
Q Consensus 103 KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ 156 (164)
.-..+..+|+.+...+..+.+.+..+...+..+++....+++.|..-..+.|-.
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~ 259 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD 259 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 345678888888888888888888888888888888888888877655555543
No 45
>PRK00295 hypothetical protein; Provisional
Probab=81.82 E-value=13 Score=26.08 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=36.4
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
.+.+||........-++.|...+.+-.++++.++.++..|.+=.++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888888888888888888887654443
No 46
>PRK02119 hypothetical protein; Provisional
Probab=81.41 E-value=14 Score=26.26 Aligned_cols=47 Identities=11% Similarity=0.004 Sum_probs=37.6
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
.+.+||..+.....-++.|...+.+-.+++|.+++++..|..=.++.
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888888888888888888888888888888888887544443
No 47
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=81.28 E-value=11 Score=27.80 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
..+..+++.|....+++.+++|....+++.|...+..+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555577777777788888888888888877766654
No 48
>PRK04406 hypothetical protein; Provisional
Probab=81.23 E-value=14 Score=26.46 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=37.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
.+.+||........-++.|...+.+-.++++.++.++..|..=.++.
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788888888888888888888888888888888888886544443
No 49
>PRK11637 AmiB activator; Provisional
Probab=81.22 E-value=22 Score=31.95 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=21.4
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
+..++.+...+..+++.+..++..+..+++..+..+..+.+..-.
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555444445444444333
No 50
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=80.84 E-value=13 Score=34.95 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=54.3
Q ss_pred hchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 92 KNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQ------------DCNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 92 KNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~------------E~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
-||+|-.+|.+|=-++-+.|-+.+..||.-++.|+. ++..+.++++..+..+..|..|....+
T Consensus 203 s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eK 277 (426)
T smart00806 203 SNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEK 277 (426)
T ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 589999999998777888999999999999999885 567789999999999999998876543
No 51
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.84 E-value=6.2 Score=26.65 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=22.2
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
.++..|+.+...+..+.+.|+.++..+...-+.+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4566777777777777777777777774444443
No 52
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=80.74 E-value=9 Score=25.76 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
....|...++.|..++..+..+++.++..+..|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666654
No 53
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=80.25 E-value=13 Score=28.50 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=9.6
Q ss_pred hhcccHHHHHHHHHhC
Q psy6769 59 LVTISVRDLNRQLKMR 74 (164)
Q Consensus 59 LvsmsVreLN~lLk~~ 74 (164)
|-+||..||+.+|...
T Consensus 1 L~~lS~~eL~~Ll~d~ 16 (150)
T PF07200_consen 1 LQDLSTEELQELLSDE 16 (150)
T ss_dssp GGS-TTHHHHHHHHH-
T ss_pred CCcCCHHHHHHHHcCH
Confidence 3467788888877533
No 54
>PRK00736 hypothetical protein; Provisional
Probab=80.00 E-value=17 Score=25.42 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=37.6
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
.+.+||........-++.|...+.+-.++++.++.++..|..=.++
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888889999999999999999998888888654443
No 55
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=79.90 E-value=13 Score=28.61 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=42.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
++...||.....+..++..|+.++..+..|-.+++-..+.|.....+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999877665
No 56
>PRK04325 hypothetical protein; Provisional
Probab=79.26 E-value=18 Score=25.71 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=37.8
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
.+.+||..+.-...-++.|...+.+-.++++.++.++..|..=.++.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788888888888888888888888888888888888876544443
No 57
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.00 E-value=19 Score=25.49 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=36.5
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
.+.+||..+.....-++.|...+.+-.++++.+++++..|..=.++.
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46678888888888888888888888888888888888876544443
No 58
>PLN02678 seryl-tRNA synthetase
Probab=78.87 E-value=6.3 Score=36.72 Aligned_cols=81 Identities=7% Similarity=0.104 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHH----hHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 65 RDLNRQLKMRGLS---REDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL----ETEKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 65 reLN~lLk~~gLs---~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~L----E~e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
.++-+.++.+|+. -+++..+-+.||.++-+.=+...+.+.+...-.. ..+...|..+...|+.|+..+..+.+
T Consensus 16 ~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~ 95 (448)
T PLN02678 16 ELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQ 95 (448)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666653 2567777777777665554444444333321111 12334455555666666666666666
Q ss_pred HHHHHHHH
Q psy6769 138 AYSLKCEA 145 (164)
Q Consensus 138 ~~K~k~e~ 145 (164)
.++.++..
T Consensus 96 ~~~~~l~~ 103 (448)
T PLN02678 96 EAKAALDA 103 (448)
T ss_pred HHHHHHHH
Confidence 66655554
No 59
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.81 E-value=13 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=20.7
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
+..|..++..|..++++|..+...++.+..+.|.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655554443
No 60
>PRK11637 AmiB activator; Provisional
Probab=78.75 E-value=39 Score=30.42 Aligned_cols=42 Identities=2% Similarity=0.067 Sum_probs=24.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
++..++.+...++.+++.+..+++.+..+++.++.+++.+..
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666666666666666666666655543
No 61
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=78.67 E-value=46 Score=30.42 Aligned_cols=84 Identities=14% Similarity=0.233 Sum_probs=48.8
Q ss_pred cHHHHHHHHHhCCCC----HHHHHHHHHHHhhhhchHHHHhhHHHHHHHHH-HHh---HH-hHHHHHHHHHHHHHHHHHH
Q psy6769 63 SVRDLNRQLKMRGLS----REDIIKMKQRRRTLKNRGYAASCRIKRIEQKD-ELE---TE-KSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 63 sVreLN~lLk~~gLs----~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~-~LE---~e-~~~L~~qie~L~~E~~~l~ 133 (164)
..+++-+.++.+|++ -+++..+-+.||.++...-+-.....++...- .+. .+ ...+..+...|+.++..+.
T Consensus 10 n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 89 (418)
T TIGR00414 10 NPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS 89 (418)
T ss_pred CHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 345556666777763 36777888888887776655544444443211 111 11 3455566666666666666
Q ss_pred HHHHHHHHHHHHH
Q psy6769 134 EELHAYSLKCEAL 146 (164)
Q Consensus 134 ~E~d~~K~k~e~L 146 (164)
.+.+.+..++..+
T Consensus 90 ~~~~~~~~~~~~~ 102 (418)
T TIGR00414 90 AALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665553
No 62
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.57 E-value=19 Score=31.55 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=23.0
Q ss_pred hhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHH-HHhhHHHHHH
Q psy6769 56 DDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGY-AASCRIKRIE 106 (164)
Q Consensus 56 DeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgY-AQnCR~KRl~ 106 (164)
|...+.-....++..+ .=..+....|+..-+.+|+... ..+|..-.+.
T Consensus 164 D~~~L~~~~~~l~~~~---~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~ 212 (325)
T PF08317_consen 164 DYAKLDKQLEQLDELL---PKLRERKAELEEELENLKQLVEEIESCDQEELE 212 (325)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHH
Confidence 3344444444444433 1123344555555566666555 4556654443
No 63
>KOG0483|consensus
Probab=78.29 E-value=13 Score=31.25 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=64.9
Q ss_pred CCCCCChhhhhc----------ccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHH
Q psy6769 50 PVIDISDDDLVT----------ISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEY 119 (164)
Q Consensus 50 ~~i~fSDeeLvs----------msVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~ 119 (164)
-...||+||... +.-+.-+++.+.-||+.-||+-+=|-||. |.|.. +||.+-..|+
T Consensus 53 kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRA----------RwK~k----qlE~d~~~Lk 118 (198)
T KOG0483|consen 53 KKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRA----------RWKTK----QLEKDYESLK 118 (198)
T ss_pred ccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccc----------cccch----hhhhhHHHHH
Confidence 346788888764 45677788888889999999999998884 23322 3777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.+.+.|+.++.++..|...+......+..
T Consensus 119 ~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~ 147 (198)
T KOG0483|consen 119 RQLESLRSENDRLQSEVQELVAELSSLKR 147 (198)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 88888888888888888777776665443
No 64
>PRK10722 hypothetical protein; Provisional
Probab=77.96 E-value=9.4 Score=33.49 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
.|+++|+++..++..+++....|+|.|+..=++
T Consensus 176 ~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERq 208 (247)
T PRK10722 176 SELDALRQQQQRLQYQLELTTRKLENLTDIERQ 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999966544
No 65
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=77.85 E-value=37 Score=27.84 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=54.3
Q ss_pred CCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHH--HH-----HhhhhchHHHHhhHHHHH----HHHHHHhHHhH
Q psy6769 48 PSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMK--QR-----RRTLKNRGYAASCRIKRI----EQKDELETEKS 116 (164)
Q Consensus 48 p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LK--qr-----RRtLKNRgYAQnCR~KRl----~q~~~LE~e~~ 116 (164)
++..-.|++++|.- ++.+.. |+..|+|-+++.... +. ++.+.+ .-..|+ .+...++....
T Consensus 32 ~~G~R~y~~~dl~~--L~~I~~-l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~------t~~~R~~lLe~~~~~l~~ri~ 102 (175)
T PRK13182 32 EYGHYIFTEEDLQL--LEYVKS-QIEEGQNMQDTQKPSSNDVEETQVNTIVQN------ISSVDFEQLEAQLNTITRRLD 102 (175)
T ss_pred CCCCEEECHHHHHH--HHHHHH-HHHcCCCHHHHHHHhhhhhhHHHHHHcCCc------cHHHHHHHHHHHHHHHHHHHH
Confidence 44456789999843 444444 567999998885522 21 122221 111222 23344444444
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHcCCCCCC
Q psy6769 117 QEYQDMELMEQDCNLM-----REELHAYSLKCEALI-KFAAKHKIHIPI 159 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l-----~~E~d~~K~k~e~L~-~~~~~~~i~ip~ 159 (164)
+|+..++.+..+.... .+|++++.+++++|. +.++-..+.+++
T Consensus 103 eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 103 ELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4444444444444332 378888888888876 334433443333
No 66
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.75 E-value=16 Score=32.62 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=35.5
Q ss_pred HHHhHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q psy6769 109 DELETEKSQEYQ-------DMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE 160 (164)
Q Consensus 109 ~~LE~e~~~L~~-------qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~~ 160 (164)
.++|....++++ +++.++.....+..|++.++..+...-.+..++||-|.++
T Consensus 122 ee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~ 180 (302)
T PF09738_consen 122 EELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPD 180 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCC
Confidence 344445555544 4566666666666777777777777778889999998876
No 67
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.67 E-value=41 Score=27.66 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhhhchH
Q psy6769 80 DIIKMKQRRRTLKNRG 95 (164)
Q Consensus 80 ev~~LKqrRRtLKNRg 95 (164)
++..++..+.+++.+.
T Consensus 28 ~l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 28 ELQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555443
No 68
>PRK04863 mukB cell division protein MukB; Provisional
Probab=76.61 E-value=31 Score=36.86 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH--HHhhhhchHHHHhhHHHHHH---HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 65 RDLNRQLKMRGLSREDIIKMKQ--RRRTLKNRGYAASCRIKRIE---QKDELETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 65 reLN~lLk~~gLs~eev~~LKq--rRRtLKNRgYAQnCR~KRl~---q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
.++..-|..-|++-+.-...+. +|-+|-++-- .||.||-+ ++...+.|...|...+..+..+...+..++...
T Consensus 1037 ~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~a 1114 (1486)
T PRK04863 1037 QELKQELQDLGVPADSGAEERARARRDELHARLS--ANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114 (1486)
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556766555444444 4444555544 45555533 566667777777788888888888888888889
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy6769 140 SLKCEALIKFAAKHKIH 156 (164)
Q Consensus 140 K~k~e~L~~~~~~~~i~ 156 (164)
|.+...+.++++..|+-
T Consensus 1115 K~~W~~v~~~~~~~~~~ 1131 (1486)
T PRK04863 1115 KAGWCAVLRLVKDNGVE 1131 (1486)
T ss_pred HHHHHHHHHHHHhcChh
Confidence 99999999999998874
No 69
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.07 E-value=18 Score=28.20 Aligned_cols=45 Identities=18% Similarity=0.376 Sum_probs=29.8
Q ss_pred HHHHHhHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELM---EQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L---~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
++..+..|...|..+.+.+ ..++..+..+...+..||+.+..+..
T Consensus 45 ~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 45 ERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666666666555433 45566667888888888888876643
No 70
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=75.89 E-value=3.9 Score=30.48 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=21.3
Q ss_pred HhHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQ------DCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~------E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
++.++..|..+|+-|+. ++.+.+-|.-.++..+..|..|.
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555543 44555555555555566666665
No 71
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=75.85 E-value=14 Score=29.07 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=37.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
-+++.+||....++.+|+..|++.+..+..|-.++.-..+.|..-
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 468889999999999999998888888888888877777777654
No 72
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.52 E-value=44 Score=27.99 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
..-+.+++..+.+.+..++.+--+- ..++..|+..+.++...++.++.+++++.++++.+..--..
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~~~l------~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEYRQL------EREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888887543222 23666666677777777777777777777666666554333
No 73
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.47 E-value=25 Score=27.67 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=44.9
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHH---HHHHHHHHHhHHhHHHHHHHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRI---KRIEQKDELETEKSQEYQDMELMEQDC 129 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~---KRl~q~~~LE~e~~~L~~qie~L~~E~ 129 (164)
..|++++..|..+ ++.+ .+++..+++.-+.+...-..-++.- --..++..|+.++..+...++.|+...
T Consensus 68 ~~s~eel~~ld~e-i~~L-------~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 68 VPSPEELAELDAE-IKEL-------REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred CCCchhHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4677788777655 4443 3566666666665554443333322 223344445555444444444444422
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHH
Q psy6769 130 NLM-REELHAYSLKCEALIKFAA 151 (164)
Q Consensus 130 ~~l-~~E~d~~K~k~e~L~~~~~ 151 (164)
..+ ..|+..+...+..+.+..+
T Consensus 140 ~~vs~ee~~~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 140 KPVSPEEKEKLEKEYKKWRKEWK 162 (169)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 2355555555555544433
No 74
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.36 E-value=44 Score=27.44 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC
Q psy6769 100 CRIKRIEQKDELETEKSQEYQDME-----------LMEQDCNLMREELHAYSLKCEALIKFAAK-HKI 155 (164)
Q Consensus 100 CR~KRl~q~~~LE~e~~~L~~qie-----------~L~~E~~~l~~E~d~~K~k~e~L~~~~~~-~~i 155 (164)
=|...+.....|+.+..+|+.+++ +++++........+.|-..+..|.+|+.+ .|+
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~ 171 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGM 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCC
Confidence 466667777777777777776655 44455555555566666667778888877 444
No 75
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.98 E-value=29 Score=28.82 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=31.7
Q ss_pred HHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 84 MKQRRRTLKNRGYAASCRIKRIEQKDELETEKS--------------QEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 84 LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~--------------~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
++.-|.||....-.++++.+.+.....+|.+.. .|...+..|+++.+.+..+..+......+|..-
T Consensus 88 V~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~ 167 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSE 167 (190)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544443 333444444444433443444444444445444
Q ss_pred HH
Q psy6769 150 AA 151 (164)
Q Consensus 150 ~~ 151 (164)
|.
T Consensus 168 ~~ 169 (190)
T PF05266_consen 168 AE 169 (190)
T ss_pred HH
Confidence 43
No 76
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=74.73 E-value=45 Score=28.17 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhH-HHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHH-------H
Q psy6769 65 RDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCR-IKRIE-QKDELETEKSQEYQDMELMEQDCNLMRE-------E 135 (164)
Q Consensus 65 reLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR-~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~~-------E 135 (164)
.+||..|..+ =+.|..|.+..++|....-+-.=+ ..... -...++.+...++.+++.+..+++++.- +
T Consensus 7 ~~LNdRla~Y---IekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e 83 (312)
T PF00038_consen 7 QSLNDRLASY---IEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE 83 (312)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence 4677776433 345555566666665544333222 11111 2344555555555555555555555544 4
Q ss_pred HHHHHHHHHHHH
Q psy6769 136 LHAYSLKCEALI 147 (164)
Q Consensus 136 ~d~~K~k~e~L~ 147 (164)
++.++.+|+...
T Consensus 84 ~~~~r~k~e~e~ 95 (312)
T PF00038_consen 84 LEDLRRKYEEEL 95 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 77
>PLN02320 seryl-tRNA synthetase
Probab=74.70 E-value=49 Score=31.56 Aligned_cols=86 Identities=8% Similarity=0.055 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHhCCCC--HHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHH---hHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 61 TISVRDLNRQLKMRGLS--REDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL---ETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 61 smsVreLN~lLk~~gLs--~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~L---E~e~~~L~~qie~L~~E~~~l~~E 135 (164)
-=..+.+-+.++.+|+. -+++..+-+.||.++...-.-..+.+.+.....- ..+...|..+...|+.++..+..+
T Consensus 73 r~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~ 152 (502)
T PLN02320 73 RDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEED 152 (502)
T ss_pred HhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666777778753 4788888888888877766655555444432211 113344555555666666666666
Q ss_pred HHHHHHHHHHH
Q psy6769 136 LHAYSLKCEAL 146 (164)
Q Consensus 136 ~d~~K~k~e~L 146 (164)
...+..+++.+
T Consensus 153 ~~~~~~~l~~~ 163 (502)
T PLN02320 153 LVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHH
Confidence 55555555553
No 78
>PRK10869 recombination and repair protein; Provisional
Probab=73.61 E-value=52 Score=31.15 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=55.9
Q ss_pred CCCChhhhhcc--cHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q psy6769 52 IDISDDDLVTI--SVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDC 129 (164)
Q Consensus 52 i~fSDeeLvsm--sVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~ 129 (164)
+.|..++|-.+ -...+|.+-++||.|-+++...++.-+ ++++...+.+.....|..++++++.+.
T Consensus 291 ~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~-------------~eL~~L~~~e~~l~~Le~e~~~l~~~l 357 (553)
T PRK10869 291 LDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLL-------------EEQQQLDDQEDDLETLALAVEKHHQQA 357 (553)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-------------HHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 45555544333 345677777888888888776554422 457888888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q psy6769 130 NLMREELHAYSLKC 143 (164)
Q Consensus 130 ~~l~~E~d~~K~k~ 143 (164)
.....++...+++.
T Consensus 358 ~~~A~~LS~~R~~a 371 (553)
T PRK10869 358 LETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777666553
No 79
>PLN02678 seryl-tRNA synthetase
Probab=72.79 E-value=68 Score=30.03 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHA 138 (164)
Q Consensus 86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~ 138 (164)
..++.+|+||+.-+ -++++..|..+..+++.+++.|+.|.+.+.+++..
T Consensus 17 ~v~~~l~~R~~~~~----~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 17 LIRESQRRRFASVE----LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHhhCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777775211 37888888888888888888888888888877654
No 80
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.72 E-value=8.9 Score=35.05 Aligned_cols=83 Identities=12% Similarity=0.264 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHH-hH---HhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMRGL--SREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL-ET---EKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 64 VreLN~lLk~~gL--s~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~L-E~---e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
...+-+.++.+++ .-+++..+-+.||.+...--+-..+.+.+...-.. .. +...+..+...|++++..+..+.+
T Consensus 11 ~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 90 (425)
T PRK05431 11 PEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELD 90 (425)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666765 34677778888888776655544444444322211 11 223455555555666666655555
Q ss_pred HHHHHHHHH
Q psy6769 138 AYSLKCEAL 146 (164)
Q Consensus 138 ~~K~k~e~L 146 (164)
.+..++..+
T Consensus 91 ~~~~~~~~~ 99 (425)
T PRK05431 91 ELEAELEEL 99 (425)
T ss_pred HHHHHHHHH
Confidence 555555543
No 81
>KOG0995|consensus
Probab=72.49 E-value=55 Score=32.04 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHI 157 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~i 157 (164)
...++++.+..+-..++.|+.|..+...|+..+++..+.|..-...+||+.
T Consensus 281 y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~ 331 (581)
T KOG0995|consen 281 YVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISG 331 (581)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 344555555556666666666666666666666666666666666677764
No 82
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.35 E-value=72 Score=29.91 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=35.7
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcCC
Q psy6769 103 KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA-----LIKFAAKHKI 155 (164)
Q Consensus 103 KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~-----L~~~~~~~~i 155 (164)
++++...+.+.+...|..++++++.+...+..++...+.+... +..++...|+
T Consensus 336 ~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m 393 (563)
T TIGR00634 336 EELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAM 393 (563)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4577777777788888888888888888887777766444322 3445544444
No 83
>smart00338 BRLZ basic region leucin zipper.
Probab=72.34 E-value=18 Score=24.25 Aligned_cols=29 Identities=17% Similarity=0.412 Sum_probs=17.5
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
++..|+.++..|..+++.|..|+..+..+
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665544
No 84
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=71.55 E-value=13 Score=27.99 Aligned_cols=38 Identities=5% Similarity=0.036 Sum_probs=25.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
+++..++.++..++++-+.|+.|+..++...|.+...-
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A 71 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 46666777777777777777777777766445544443
No 85
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=71.33 E-value=84 Score=28.81 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=21.4
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHA 138 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~ 138 (164)
++.+..|..+..+++.+++.|+.+.+.+.+++..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666655544
No 86
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.26 E-value=57 Score=26.83 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=25.2
Q ss_pred hhcccHHHHHHHHHhCC---------------CCHHHHHHHHHHHhhhhchHHHHhhHHHHHH
Q psy6769 59 LVTISVRDLNRQLKMRG---------------LSREDIIKMKQRRRTLKNRGYAASCRIKRIE 106 (164)
Q Consensus 59 LvsmsVreLN~lLk~~g---------------Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~ 106 (164)
|+.|+|+|+-+.|=.-| ++-+....++..-..++...-....+...++
T Consensus 27 I~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~ 89 (188)
T PF03962_consen 27 IVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELE 89 (188)
T ss_pred CchhhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777664333 3444455555555555555444444444443
No 87
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=70.52 E-value=54 Score=26.28 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=12.3
Q ss_pred HHHHHHhCCCCHHHHHHHH
Q psy6769 67 LNRQLKMRGLSREDIIKMK 85 (164)
Q Consensus 67 LN~lLk~~gLs~eev~~LK 85 (164)
|=+.|+..|+|.+|-..+=
T Consensus 7 ~v~~Le~~Gft~~QAe~i~ 25 (177)
T PF07798_consen 7 FVKRLEAAGFTEEQAEAIM 25 (177)
T ss_pred HHHHHHHCCCCHHHHHHHH
Confidence 3345666788888876553
No 88
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=70.43 E-value=18 Score=33.05 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=39.1
Q ss_pred HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
...|..+|+||+.. ..=++++..|..+..++..+++.|+.|.+.+.+++...+
T Consensus 12 ~~v~~~l~~R~~~~---~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~ 64 (418)
T TIGR00414 12 DLVKESLKARGLSV---DIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK 64 (418)
T ss_pred HHHHHHHHhcCCCh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577888888521 112688888888888888888888888888888776643
No 89
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.19 E-value=20 Score=31.60 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=12.7
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
++..+||.+..++.+++..|..|...+.++
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 90
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=69.98 E-value=32 Score=25.61 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=27.0
Q ss_pred CCCCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHh
Q psy6769 46 LSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRR 89 (164)
Q Consensus 46 l~p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRR 89 (164)
-+++..-.||++++..+..= +.|+..|+|-+++..+-....
T Consensus 31 r~~~g~R~Y~~~~l~~l~~I---~~lr~~G~~l~~I~~~l~~~~ 71 (107)
T cd01111 31 RTEGGYGLFDDCALQRLRFV---RAAFEAGIGLDELARLCRALD 71 (107)
T ss_pred cCCCCCeecCHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHh
Confidence 34444556899888776432 445667999888877765443
No 91
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.94 E-value=36 Score=28.52 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=17.2
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
+..|+.+...|..+.+++.+.++...++++.++++.+.+..
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444443
No 92
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=69.83 E-value=24 Score=34.80 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=29.8
Q ss_pred HHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 97 AASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 97 AQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
|..||.|+ .+||.|...|++++.....++..+..|+..|.
T Consensus 540 ~e~~r~r~----~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 540 AESCRQRR----RQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44598887 45888888888888888888777777764443
No 93
>KOG0898|consensus
Probab=69.68 E-value=6.9 Score=32.01 Aligned_cols=39 Identities=31% Similarity=0.470 Sum_probs=29.9
Q ss_pred CCChhhhhcccHHHHHH--------HHHhCCCCHHHHHHHHHHHhhhh
Q psy6769 53 DISDDDLVTISVRDLNR--------QLKMRGLSREDIIKMKQRRRTLK 92 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~--------lLk~~gLs~eev~~LKqrRRtLK 92 (164)
++.-|+|..||..+|-. .+ .+||++.+...||.-|+.-|
T Consensus 26 GVdld~Lldms~~~~~~l~~ar~rrR~-~RGL~~k~~~liKklrkAkk 72 (152)
T KOG0898|consen 26 GVDLDQLLDMSTEQLVKLFPARQRRRL-NRGLTRKPHSLIKKLRKAKK 72 (152)
T ss_pred CCCHHHHhcCCHHHHHHHHHHHHHHHH-HcccccchHHHHHHHHHHHh
Confidence 66778999999999832 23 38999999999998876544
No 94
>KOG1414|consensus
Probab=69.60 E-value=0.66 Score=41.98 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHhhhhchHHHHh---hHHHHHHHHHHHhHHhHHHH
Q psy6769 83 KMKQRRRTLKNRGYAAS---CRIKRIEQKDELETEKSQEY 119 (164)
Q Consensus 83 ~LKqrRRtLKNRgYAQn---CR~KRl~q~~~LE~e~~~L~ 119 (164)
..|+.+|+.+|+.+|+. ||.++...-..|+.++..|.
T Consensus 152 ~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~ 191 (395)
T KOG1414|consen 152 EEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLP 191 (395)
T ss_pred hHHHHhhccccccccCCCCCCccccccccccccchHhhcC
Confidence 46888999999999999 99999876655555544444
No 95
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.24 E-value=39 Score=26.62 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=24.9
Q ss_pred HHhHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDM--ELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 110 ~LE~e~~~L~~qi--e~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.|+.+...|.... +.|..++..+..|+..+..+++.|.+
T Consensus 97 ~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 97 SLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444333 55667777777777777777777775
No 96
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=69.23 E-value=21 Score=29.47 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=20.3
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.++.|+..|..++..|+.++..+..|...++++...+
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555443
No 97
>PRK03918 chromosome segregation protein; Provisional
Probab=69.15 E-value=60 Score=31.30 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhhhhc
Q psy6769 65 RDLNRQLKMRGLSREDIIKMKQRRRTLKN 93 (164)
Q Consensus 65 reLN~lLk~~gLs~eev~~LKqrRRtLKN 93 (164)
.+++..| ..|..++...++.....+++
T Consensus 573 ~~~~~~l--~~L~~~~~~~~~~~~~~l~~ 599 (880)
T PRK03918 573 AELLKEL--EELGFESVEELEERLKELEP 599 (880)
T ss_pred HHHHHHH--hhhccchHHHHHHHHHHhhh
Confidence 3444444 23444455566666666654
No 98
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.74 E-value=27 Score=30.16 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 81 IIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 81 v~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
+.-|...|=|.|.| ..+||.|+..+..++..|+.|++.++.+--.+=.|..-|+.+-
T Consensus 81 LpIVtsQRDRFR~R-------------n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 81 LPIVTSQRDRFRQR-------------NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 44556666666644 3579999888888888888888888887666666666666664
No 99
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=68.32 E-value=38 Score=25.38 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=45.1
Q ss_pred CCCCCCCChhh---hh------cccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHH
Q psy6769 48 PSPVIDISDDD---LV------TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQE 118 (164)
Q Consensus 48 p~~~i~fSDee---Lv------smsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L 118 (164)
|.+.-.+|+|. +| ..||.++=+. +|+|...+-.++..=+. .|....=..+... -......+
T Consensus 7 ~~~rr~ys~EfK~~aV~~~~~~g~sv~evA~e---~gIs~~tl~~W~r~y~~---~~~~~~~~~~~~~----~~~~~~~~ 76 (121)
T PRK09413 7 PEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQ---HGVAASQLFLWRKQYQE---GSLTAVAAGEQVV----PASELAAA 76 (121)
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHH---HCcCHHHHHHHHHHHhh---cccccccccccCC----chhHHHHH
Confidence 44445566663 33 3467777554 69999999998665322 1111000000000 00112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 119 YQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 119 ~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
..++.+|++++.++..|+|-+|....
T Consensus 77 ~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 77 MKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777776665543
No 100
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=68.03 E-value=67 Score=26.38 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=24.6
Q ss_pred hhHHhhhhhccccCchhhHHHHHhhh---ccCCCCCCCCCCCCChhhhhcccHHHHHHHH
Q psy6769 15 LGLFILNFTLLIPCSKKNVELLVNFV---LRVPPLSPSPVIDISDDDLVTISVRDLNRQL 71 (164)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~e~l~~~~---~~~~pl~p~~~i~fSDeeLvsmsVreLN~lL 71 (164)
-|-...-|.-.-|-|-.-|..|..-. +......+...-| --++|-+.-..||=|.-
T Consensus 17 ~~~~~~q~vS~~p~tR~dVi~L~e~Ld~~L~~~~ar~~gIcp-vr~~ly~~~F~ELIRQV 75 (189)
T PF10211_consen 17 DGQLWIQFVSSAPATRQDVIQLQEWLDKMLQQRQARETGICP-VREELYSQCFDELIRQV 75 (189)
T ss_pred CCeeeEeeeCCCCCCHHHHHHHHHHHHHHHHHhcCCcccccH-HHHHHHHHHHHHHHHHH
Confidence 34444445555566665555552211 1111111221111 13566666666666654
No 101
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=67.54 E-value=55 Score=25.22 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=28.0
Q ss_pred HHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 83 KMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 83 ~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.|.+++|...-|.-.. +....++.+...|...+++|+.+++...++....+.+..+|.
T Consensus 43 Ll~~~~r~~~~~e~l~-------~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLS-------DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555444333 333344444444444455555555555555544444444443
No 102
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=67.52 E-value=71 Score=26.52 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Q psy6769 76 LSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK-CEALIKFAAKHK 154 (164)
Q Consensus 76 Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k-~e~L~~~~~~~~ 154 (164)
.|+-++.++|++-.+.+ ||| .-|+.....|..++-++..+..++.++++..-.. |+.|.-+....|
T Consensus 7 pTK~eL~~lk~~L~~a~-rg~------------~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g 73 (201)
T PRK02195 7 LTKNSLKKQKKQLKMLE-RYL------------PTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLY 73 (201)
T ss_pred CCHHHHHHHHHHHHHHH-HhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56777777777666666 565 2477778888888999999999988888875444 444544444444
Q ss_pred C
Q psy6769 155 I 155 (164)
Q Consensus 155 i 155 (164)
.
T Consensus 74 ~ 74 (201)
T PRK02195 74 F 74 (201)
T ss_pred c
Confidence 4
No 103
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=67.51 E-value=39 Score=26.39 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=22.7
Q ss_pred CCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy6769 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRR 88 (164)
Q Consensus 52 i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrR 88 (164)
--+|++++..+ +.+.. |+..|+|=+++..+=+-+
T Consensus 36 R~Y~~~~l~~l--~~I~~-lr~~G~sL~eI~~~l~~~ 69 (134)
T cd04779 36 RYYDETALDRL--QLIEH-LKGQRLSLAEIKDQLEEV 69 (134)
T ss_pred eeECHHHHHHH--HHHHH-HHHCCCCHHHHHHHHHhh
Confidence 35788887765 33433 467899988887765443
No 104
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=67.14 E-value=44 Score=25.37 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCc
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK-HKIHIPIE 160 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~-~~i~ip~~ 160 (164)
+..+.++.+.|..++..+..|++.++..-+.+...|+. .|..=|.|
T Consensus 59 i~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~~~~gE 105 (117)
T COG2919 59 IAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGMSKPGE 105 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCCCCCC
Confidence 33555556666666666666666666665555555543 34444433
No 105
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=66.45 E-value=23 Score=30.33 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=24.7
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
..|++.|+.|+..|+-++|.+..+++++.+.-..+-..++.+
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666665554444445543
No 106
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.24 E-value=65 Score=32.17 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=37.6
Q ss_pred HHHHHHHHhHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 104 RIEQKDELETEKSQEYQDME----------LMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 104 Rl~q~~~LE~e~~~L~~qie----------~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
=++-..+||.|+..|+.++. .|+.|+.++..|.+.++.+++.+.++
T Consensus 95 ll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rL 150 (717)
T PF09730_consen 95 LLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARL 150 (717)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999988775 45678999999999999998887655
No 107
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.17 E-value=1.2e+02 Score=28.66 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=40.4
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHI 157 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~i 157 (164)
+...++.+...+...++.|+.+-......++.|+.++..+.+.....++|-
T Consensus 391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpg 441 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPG 441 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 566777777777777888888888888888888888888888888887773
No 108
>PRK00846 hypothetical protein; Provisional
Probab=66.08 E-value=49 Score=24.13 Aligned_cols=48 Identities=19% Similarity=0.025 Sum_probs=36.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
.+.+||....-...-++.|...+.+..+.++.++.++..|..=.++.+
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788877777778888888888888888888888887775555543
No 109
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=65.82 E-value=13 Score=27.27 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
+++|..|+..|..++++|..|+.+.+++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556666666666666666665555554
No 110
>PLN02320 seryl-tRNA synthetase
Probab=65.75 E-value=30 Score=33.01 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHA 138 (164)
Q Consensus 85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~ 138 (164)
...+..+|+||+. . . ++++..|..+...+..+++.|+.|.+.+.+++..
T Consensus 77 ~~v~~~l~~R~~~--~--~-vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 77 EAVAINIRNRNSN--A--N-LELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHhcCCC--c--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888863 2 1 8888999999999999999999988888777643
No 111
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=65.74 E-value=32 Score=27.89 Aligned_cols=136 Identities=17% Similarity=0.180 Sum_probs=77.0
Q ss_pred CchHHhhhHHhhhhhccccCchhhHHHHHhhhccCCCCCCCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHH-----H
Q psy6769 9 PSYVFQLGLFILNFTLLIPCSKKNVELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDII-----K 83 (164)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~pl~p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~-----~ 83 (164)
....|--.||.-+.+.|.||=++.-..+...........+ +-+.|--|.|+.= +.-|.+-|.-..+...+.. -
T Consensus 26 ~~~~Fd~~LF~~~~~~L~~yl~Ei~~~l~~L~~~~~~~~~-~~~~~laEkL~~Q-~~AL~r~l~t~~lr~~~~~~~~~~~ 103 (173)
T PF07445_consen 26 HQARFDRQLFSCRSQRLSDYLQEIEQTLAQLQQQVEQNRL-QQVAFLAEKLVAQ-IEALQRELATQSLRKKESKPSSRKP 103 (173)
T ss_pred chhhccHHHHhccCchHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHH-HHHHHHHHHhccCccCCccccccCc
Confidence 4567889999999999999988887777553332111111 2234444444432 3344444433333222221 1
Q ss_pred HHHHHhh-hhchHHHHhhHHHHHHHHHHHhH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 84 MKQRRRT-LKNRGYAASCRIKRIEQKDELET----EKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 84 LKqrRRt-LKNRgYAQnCR~KRl~q~~~LE~----e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
+.+.+.+ -|..+|...=+.+--+....|+. +...++.++..+..-+.++.+.++.+...++..
T Consensus 104 ~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~~~ 171 (173)
T PF07445_consen 104 IHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQRCRQAIEKIEEQIQRR 171 (173)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333 36677776555544343334432 566677778888888888888777777766543
No 112
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.71 E-value=23 Score=34.93 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=16.4
Q ss_pred CCCCCchHHhhhHHhhhhhccccCchhhH
Q psy6769 5 SNPEPSYVFQLGLFILNFTLLIPCSKKNV 33 (164)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (164)
-+|-|..|=.+.- -+|-.+++|.-+--|
T Consensus 297 Vtp~P~~V~KiAa-sf~A~ly~P~~dLsv 324 (652)
T COG2433 297 VTPAPETVKKIAA-SFNAVLYTPDRDLSV 324 (652)
T ss_pred CCCChHHHHHHHH-HcCCcccCCcccCCH
Confidence 4677777665543 346677777644333
No 113
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=65.68 E-value=54 Score=28.48 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=34.4
Q ss_pred HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
...|.+++-=-+++ --.+...+...|+.+...+..++..|..|+..+..++..+....+.|
T Consensus 69 ~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 69 QEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333344 34455566667777777666666666666666666655555554443
No 114
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=65.61 E-value=17 Score=31.80 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=27.6
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.|+.+..+|+.++..++.|...+.+|+..++++++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667777777777777777777777777777765
No 115
>KOG4571|consensus
Probab=65.54 E-value=17 Score=32.59 Aligned_cols=35 Identities=9% Similarity=0.211 Sum_probs=30.5
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
+.+.++||.++.+|+.+.+.|.+|+..+++-+-+.
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999998776554
No 116
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.42 E-value=78 Score=26.23 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=30.6
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
...++.+...|.-+-+.|......+.+|+|.+..+++...
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i 134 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAI 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777788888888888888888888887743
No 117
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=65.35 E-value=29 Score=27.50 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=31.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE 160 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~~ 160 (164)
...|...|..+++.-..|+..+.+|+..+ .+++.+...|.++|..+.++
T Consensus 65 vq~ei~~Le~kIs~q~~e~~dlkqeV~dL-ss~eRIldiAkk~gLkl~~~ 113 (120)
T COG4839 65 VQGEITDLESKISEQKTENDDLKQEVKDL-SSPERILDIAKKAGLKLNNE 113 (120)
T ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHh-ccHHHHHHHHHHccccCCCc
Confidence 33444445555555555555555555444 35788889999999998765
No 118
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=65.15 E-value=24 Score=29.70 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 103 KRIEQKDELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 103 KRl~q~~~LE~e~~~L~~qie~L~~E~~~l 132 (164)
.......++..|+..|++|+..|+.++.++
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677778777777777777777755
No 119
>PRK14154 heat shock protein GrpE; Provisional
Probab=65.15 E-value=23 Score=30.14 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=21.1
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
.|+.+...+..+++.++....++..|.+.|+.+.++
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666666666665554
No 120
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=65.07 E-value=11 Score=27.67 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHhhhhchHH
Q psy6769 76 LSREDIIKMKQRRRTLKNRGY 96 (164)
Q Consensus 76 Ls~eev~~LKqrRRtLKNRgY 96 (164)
+|.+++..|+.++.-+|+.|+
T Consensus 39 Yt~~di~~l~~I~~llr~~G~ 59 (99)
T cd04765 39 YRPKDVELLLLIKHLLYEKGY 59 (99)
T ss_pred eCHHHHHHHHHHHHHHHHCCC
Confidence 444444444444444444443
No 121
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=64.68 E-value=42 Score=25.62 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=40.0
Q ss_pred hchHHHHhhHHHHH---HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 92 KNRGYAASCRIKRI---EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 92 KNRgYAQnCR~KRl---~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
|+...+..|..-+- +....++.+....+.+++.|+.++...+..+ ..|..|+.|.+-..++.
T Consensus 64 k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r-~~k~eyd~La~~I~~~p 128 (139)
T PF05615_consen 64 KSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVR-QNKEEYDALAKKINSQP 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCC
Confidence 34444444433322 2345667777777778888888887776665 45668999998876654
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.65 E-value=60 Score=32.17 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=31.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
+...+....+...+...++.|..++..-..+++.++.++..|.+.
T Consensus 466 ~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 466 VRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666677777777777777777778888777776644
No 123
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.58 E-value=75 Score=28.07 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 76 LSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 76 Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+..++...++.....-+.+--...-...--.+...|+.+-...+.+...+..+..++..|++.++.+|+...
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333333333445555555556666677777777777777777777776654
No 124
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=64.51 E-value=34 Score=30.66 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=41.1
Q ss_pred CChhhhhcccHHHHHHHHHhCC-------CCHHH--HHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHH
Q psy6769 54 ISDDDLVTISVRDLNRQLKMRG-------LSRED--IIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMEL 124 (164)
Q Consensus 54 fSDeeLvsmsVreLN~lLk~~g-------Ls~ee--v~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~ 124 (164)
-.+++|-=+|+.||-......+ .+.-+ +.||..... =|++-..+..+|+..+..+..++..
T Consensus 57 s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lml~RL~~EL~----------~Rk~L~~~~~el~~~k~~l~~~~~~ 126 (355)
T PF09766_consen 57 SKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLMLARLEFELE----------QRKRLEEQLKELEQRKKKLQQENKK 126 (355)
T ss_pred CCCCCCcCccHHHHHHhChhhccccccCCCChHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888543222 11111 222222211 1333344455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 125 MEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 125 L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
.+..++.+...++.++....-++.+
T Consensus 127 k~~~L~~l~~~L~~l~~a~~plq~~ 151 (355)
T PF09766_consen 127 KKKFLDSLPPQLKSLKKAAKPLQEY 151 (355)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444444443
No 125
>PRK09039 hypothetical protein; Validated
Probab=64.13 E-value=60 Score=28.96 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
+..|++||+.|+.+++.+..++++.+.+.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444433
No 126
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=64.07 E-value=12 Score=26.91 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=35.0
Q ss_pred HhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 98 ASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 98 QnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
|+||.- +....+++..+.+-..+++.|+.++..-+.-+..|+.++
T Consensus 38 q~ar~~-i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 38 QKARAA-IRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHH-HHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356654 667777888888888889999998888888888887765
No 127
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=63.80 E-value=1.1e+02 Score=27.43 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=19.9
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
++..|+.+...|..+.+.|..++..-+..++.+..++++|.+
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~ 143 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKK 143 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444444444444444444444444444444443
No 128
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=63.76 E-value=36 Score=29.37 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=42.3
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcC
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI---KFAAKHK 154 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~---~~~~~~~ 154 (164)
.|++-.-..+.+|..|+.++..++..++.|++.+|...-+|+ +|..+.+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 588888888999999999999999999999999998888887 7777776
No 129
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=63.58 E-value=73 Score=25.24 Aligned_cols=93 Identities=9% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHH----HHHHhHHhHHHHHHHHHHH
Q psy6769 51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQ----KDELETEKSQEYQDMELME 126 (164)
Q Consensus 51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q----~~~LE~e~~~L~~qie~L~ 126 (164)
+..+.|=+-..+....||..+.. .-..|..-|.+..+-.=+=++-+.|+.. ...+..+......++.+++
T Consensus 38 ~L~~iDFeqLkien~~l~~kIeE------Rn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r 111 (177)
T PF13870_consen 38 GLHLIDFEQLKIENQQLNEKIEE------RNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLR 111 (177)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667888888888743 3344455556666677777787777753 4456666666777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 127 QDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 127 ~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
.++.++..+++.++.....|..-
T Consensus 112 ~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 112 EELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888877776543
No 130
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=63.47 E-value=12 Score=30.42 Aligned_cols=38 Identities=18% Similarity=0.396 Sum_probs=29.6
Q ss_pred CCChhhhhcccHHHHHHHHH-------hCCCCHHHHHHHHHHHhh
Q psy6769 53 DISDDDLVTISVRDLNRQLK-------MRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk-------~~gLs~eev~~LKqrRRt 90 (164)
+.+-|+|.+||.+||-.++. .+||+.++...||..|..
T Consensus 19 G~~l~~L~~m~~~e~~~L~~aR~RR~~~RGl~~~~~~LlkKirk~ 63 (143)
T PTZ00096 19 GVELEKLLALPEEELVELFRARQRRRINRGIKRKHPTLLKKLRKA 63 (143)
T ss_pred cCCHHHHHcCCHHHHHHHcCcccccccccCCCHHHHHHHHHHHHH
Confidence 67889999999999987653 267777777777777653
No 131
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=63.38 E-value=41 Score=23.70 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 66 DLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 66 eLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
.++..+..+.++.+++..+.+-|...+.=|=+=-= .-+-+-+..|+.+...+..+++.|..+...+..++..++.++..
T Consensus 23 ~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~-~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 23 QLERQLRELELTLEELEKLDDDRKVYKSVGKMFVK-QDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555554443322111 12346677888888888888888888888888888888777654
No 132
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=62.92 E-value=48 Score=23.52 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=19.8
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
..||..+.+|-.-.++|+.||..+..+...+.+.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666655544444443
No 133
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=62.62 E-value=45 Score=25.17 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 99 SCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 99 nCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
.|+.-=..+...|+.+...+..++++++.++.....++..+|..
T Consensus 73 ~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 73 HCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344566666666666666666666666666666555543
No 134
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=62.58 E-value=45 Score=24.73 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHA-------YSLKCEALI 147 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~-------~K~k~e~L~ 147 (164)
.-|+.+++.|+.++..+.+|.+. +.++.+.|.
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33555556666655555555444 555555544
No 135
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=62.58 E-value=17 Score=28.10 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=26.1
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
..+++.+...+..+++.+..+..+...+.+.++.+.+.-.
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~ 52 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEK 52 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666777777777777777777776666543
No 136
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=62.41 E-value=47 Score=24.35 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 65 RDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 65 reLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
..+...+..+....+++..+.+=++-.+.=|-+-- ..-+-+.+..|+.....+...++.+..+...+..++..++.++.
T Consensus 23 ~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv-~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 23 QKVEAQLNENKKALEELEKLADDAEVYKLVGNVLV-KQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455556666666655555555454332 23335677888888888888899999999999999999988887
Q ss_pred HHH
Q psy6769 145 ALI 147 (164)
Q Consensus 145 ~L~ 147 (164)
.+.
T Consensus 102 ~~~ 104 (105)
T cd00632 102 QAQ 104 (105)
T ss_pred HHh
Confidence 764
No 137
>KOG0930|consensus
Probab=62.40 E-value=23 Score=32.51 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
.|||.+|-+.|-.+||+- .+|-.+|++|+.|++.+..|+|.+
T Consensus 9 ~~Ls~~E~~eL~~ir~rk------------------------~qL~deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 9 NDLSEEERMELENIRRRK------------------------QELLDEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCHHHHHhHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 589999999999988752 234455677777777777776654
No 138
>KOG1103|consensus
Probab=62.28 E-value=29 Score=32.79 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=74.1
Q ss_pred hhhhhcccHHHHHHHH-H--hCCCCHHHHHH--HHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q psy6769 56 DDDLVTISVRDLNRQL-K--MRGLSREDIIK--MKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCN 130 (164)
Q Consensus 56 DeeLvsmsVreLN~lL-k--~~gLs~eev~~--LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~ 130 (164)
.++|+.|=+-|--+.+ | .-|.-.+|++. =|++-||-|--.-|..=|.|-++.-...|+...++..+++.|+.|++
T Consensus 183 Heqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ 262 (561)
T KOG1103|consen 183 HEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELE 262 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777665544322 1 23555666653 36777898988999999999999888888888888888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 131 LMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 131 ~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
+..+.-..+|...+.|....+..
T Consensus 263 ree~r~K~lKeEmeSLkeiVkdl 285 (561)
T KOG1103|consen 263 REEKRQKMLKEEMESLKEIVKDL 285 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888888888888888776553
No 139
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=61.91 E-value=39 Score=28.09 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=52.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhH---------------HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 68 NRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCR---------------IKRIEQKDELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 68 N~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR---------------~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l 132 (164)
|..+ +.-..++|...|+-|.-+|=-+|.+.-- ..-+.=..-|..+...++.+.+.|..++..+
T Consensus 53 Ns~v--rk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v~~~e~~kl~~~~e~L~~e~~~L 130 (170)
T PRK13923 53 NSVV--RKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDVLSEQIGKLQEEEEKLSWENQTL 130 (170)
T ss_pred HHHH--HHHHHHHHHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 3345689999999998887223322200 0001101114567777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6769 133 REELHAYSLKCEALIKF 149 (164)
Q Consensus 133 ~~E~d~~K~k~e~L~~~ 149 (164)
.++...+...|+.|...
T Consensus 131 ~~~~~~~~eDy~~Li~I 147 (170)
T PRK13923 131 KQELAITEEDYRALIVI 147 (170)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998744
No 140
>PRK14162 heat shock protein GrpE; Provisional
Probab=61.81 E-value=32 Score=28.81 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+...|+.+...+..+++.++....++..|.+.|+.+.+.
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777888888888888888888887766
No 141
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=61.78 E-value=39 Score=23.47 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=10.6
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
|-..+.+|..++..|+.+....+.|
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333333
No 142
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=61.69 E-value=27 Score=30.29 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l 132 (164)
+....+|+.|+.+|+.|+.+|+.+....
T Consensus 65 ~~~~~~l~~EN~~Lr~e~~~l~~~~~~~ 92 (283)
T TIGR00219 65 LKDVNNLEYENYKLRQELLKKNQQLEIL 92 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888877775555543
No 143
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=61.55 E-value=32 Score=29.30 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCCCCcc
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEA---LIKFAAKHKIHIPIEL 161 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~---L~~~~~~~~i~ip~~l 161 (164)
|+..|..+++.+..|++.++.|.+.++.=.+. |........-..|+.+
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~~~~~ 176 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQELDNL 176 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 55556666677777777777666666654444 3344444444344443
No 144
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=61.52 E-value=45 Score=28.45 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=26.4
Q ss_pred CCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhh
Q psy6769 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLK 92 (164)
Q Consensus 52 i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLK 92 (164)
..+|||+|...|-+|+=+.|+ -...|-+..|-+..+-.|
T Consensus 6 ~~~sDeell~~skeel~~rLR--~~E~ek~~~m~~~g~lm~ 44 (195)
T PF10226_consen 6 SKVSDEELLRWSKEELVRRLR--RAEAEKMSLMVEHGRLMK 44 (195)
T ss_pred ccCCHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHhHHH
Confidence 468999999999999999884 334444444444444443
No 145
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=60.98 E-value=2.8 Score=31.73 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.|+.++-.+..++..|..++.++..++..+|.+++.|.
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe 40 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELE 40 (118)
T ss_dssp --------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555444
No 146
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=60.96 E-value=92 Score=25.55 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+..+++.|..++..+..+...++.+++.
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333333
No 147
>smart00340 HALZ homeobox associated leucin zipper.
Probab=60.70 E-value=28 Score=23.24 Aligned_cols=30 Identities=10% Similarity=0.116 Sum_probs=22.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 112 ETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 112 E~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
|-+-.-|.+-.+.|..|+.++.+|...+++
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556778889999999999999766553
No 148
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.55 E-value=47 Score=26.96 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=15.3
Q ss_pred hhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhh
Q psy6769 58 DLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLK 92 (164)
Q Consensus 58 eLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLK 92 (164)
.++.-.++|....+... +..+..+...+.+++
T Consensus 26 ~~l~q~ird~e~~l~~a---~~~~a~~~a~~~~le 57 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKA---RQALARVMANQKRLE 57 (221)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45555566666655322 333344444444444
No 149
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=60.52 E-value=66 Score=24.78 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQ 86 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKq 86 (164)
.++++++-.+ .+=..|+..|+|=+++..+=+
T Consensus 38 ~Y~~~~v~~l---~~I~~lr~~GfsL~eI~~ll~ 68 (131)
T cd04786 38 DYPPETVWVL---EIISSAQQAGFSLDEIRQLLP 68 (131)
T ss_pred ecCHHHHHHH---HHHHHHHHcCCCHHHHHHHHh
Confidence 4777776655 233346778999998888765
No 150
>PRK14139 heat shock protein GrpE; Provisional
Probab=60.48 E-value=35 Score=28.42 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=33.4
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
++...|+.+...+..+++.++...-++.-|.+.|+.+.++
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~k 71 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQE 71 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888889999999999999999888776
No 151
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=60.28 E-value=61 Score=24.44 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=15.6
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
|...+..+..++..+..+..++..+....+.++..|
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444
No 152
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=60.23 E-value=64 Score=23.47 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=34.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+.+++|.....-.++++.++..+-.+...-..+|++|+.
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888889999999999999999999999987
No 153
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.94 E-value=38 Score=25.11 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 64 VreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
...+...++.+.++.+++..+.+-++-.|.=|-.--=+ -+-+.+.+|++....+...++.|..+...+...+..+..++
T Consensus 26 ~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~-~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 26 KQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKT-DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhhee-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667778888888888888877776644333 35677788888888888888888888888888888888877
Q ss_pred HHHH
Q psy6769 144 EALI 147 (164)
Q Consensus 144 e~L~ 147 (164)
..+.
T Consensus 105 ~~~~ 108 (110)
T TIGR02338 105 QEAL 108 (110)
T ss_pred HHHh
Confidence 7654
No 154
>KOG3119|consensus
Probab=59.42 E-value=21 Score=30.88 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=25.6
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
-..++.||.|+..|+.++++|+.|+..++.-.-
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888876653
No 155
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=58.93 E-value=37 Score=32.89 Aligned_cols=10 Identities=30% Similarity=0.395 Sum_probs=5.0
Q ss_pred ChhhhhcccH
Q psy6769 55 SDDDLVTISV 64 (164)
Q Consensus 55 SDeeLvsmsV 64 (164)
+.|+|+++--
T Consensus 115 p~eeLvtle~ 124 (546)
T PF07888_consen 115 PLEELVTLED 124 (546)
T ss_pred ccccceeecc
Confidence 3455555533
No 156
>PRK14143 heat shock protein GrpE; Provisional
Probab=58.85 E-value=39 Score=29.19 Aligned_cols=28 Identities=7% Similarity=0.194 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
.|..+++.++....|+.-+.+.|+.+.+
T Consensus 78 ~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 78 SLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.79 E-value=69 Score=27.43 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=35.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
...+|......|++|+.+|+-+++++..+++.++++=..++.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~ 96 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYL 96 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999887666663
No 158
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=58.78 E-value=44 Score=29.76 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 122 MELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 122 ie~L~~E~~~l~~E~d~~K~k~e 144 (164)
...|+++...+..++|++.+.++
T Consensus 223 ~seLq~r~~~l~~~L~~L~~e~~ 245 (289)
T COG4985 223 KSELQKRLAQLQTELDALRAELE 245 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344444444444444444333
No 159
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.74 E-value=39 Score=22.09 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=20.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
|-..-..|.++-+.|..|++.+..|+..++.+.
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455566666666666666666666666554
No 160
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=58.64 E-value=48 Score=24.18 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=21.9
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
..++.....+..+++.+..+...+..+++.++..++.+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555556666666666666666666555544
No 161
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=58.63 E-value=70 Score=23.45 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=29.5
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 103 KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 103 KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+=+.++..|+.....|...++..+.|...+..|-+-++.=+..|.
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677777777777777777777777777666666555554
No 162
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=58.57 E-value=62 Score=25.68 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=44.7
Q ss_pred hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy6769 94 RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPI 159 (164)
Q Consensus 94 RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~ 159 (164)
|.+|.-|- ++.||.-...|..=++.-+.+-....++..+.+.+++.+...+.+.||.+-+
T Consensus 15 ra~~re~~------~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~~Git~ee 74 (134)
T PRK10328 15 RAMAREFS------IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELMKADGINPEE 74 (134)
T ss_pred HHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 66665553 4456666666777777777888888888888888899998888888887643
No 163
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=58.26 E-value=59 Score=27.96 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
+..++.+...+..+++.++.+......+++.++..++....+..
T Consensus 146 ~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~ 189 (423)
T TIGR01843 146 LELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKE 189 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555544443
No 164
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=58.14 E-value=1.3e+02 Score=28.63 Aligned_cols=96 Identities=8% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhh--hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q psy6769 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRT--LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDC 129 (164)
Q Consensus 52 i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRt--LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~ 129 (164)
...|.++|-+| ...++..+ .-||..+...|=.++-. .=.|..++= ..|+.+...+......+...+..++.+.
T Consensus 395 q~~t~~~i~~m-l~~V~~ii--~~Lt~~~~~~L~~Ik~SprYvdrl~~~L--~qk~~~~~k~~~~~~~l~~kr~e~~~e~ 469 (507)
T PF05600_consen 395 QQQTAESIEEM-LSAVEEII--SQLTNPRTQHLFMIKSSPRYVDRLVESL--QQKLKQEEKLRRKREDLEEKRQEAQEEQ 469 (507)
T ss_pred HhcCHHHHHHH-HHHHHHHH--HHhcCHHHHHHHHHhcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888887 55666665 35666666666666654 223443332 3344445555556666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 130 NLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 130 ~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
..+.-.++.+.++...|++++-+
T Consensus 470 ~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 470 QELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666665543
No 165
>KOG1760|consensus
Probab=58.10 E-value=38 Score=27.24 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhchHHHHh-------------hH-------HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 80 DIIKMKQRRRTLKNRGYAAS-------------CR-------IKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 80 ev~~LKqrRRtLKNRgYAQn-------------CR-------~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
.-..||-.|--++|=.=|-+ |+ .+.-.....||..+..+..+++.|..+...+...++++
T Consensus 35 lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~L 114 (131)
T KOG1760|consen 35 LKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDEL 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777766653 11 12333456677777778888888888888888888877
Q ss_pred HHHHH
Q psy6769 140 SLKCE 144 (164)
Q Consensus 140 K~k~e 144 (164)
|.-+.
T Consensus 115 K~~LY 119 (131)
T KOG1760|consen 115 KKVLY 119 (131)
T ss_pred HHHHH
Confidence 76544
No 166
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=57.58 E-value=1.2e+02 Score=25.68 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 113 TEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 113 ~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.+....+..+..+..|+..+..++......|+.|..
T Consensus 255 ~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 255 EEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666666666666666654
No 167
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=57.47 E-value=20 Score=23.47 Aligned_cols=19 Identities=21% Similarity=0.428 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~ 136 (164)
|..++..|..++..|..++
T Consensus 30 le~~~~~L~~en~~L~~~i 48 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEI 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 168
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=57.29 E-value=38 Score=25.10 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=22.6
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
+..||.++..++.++..-+.|.++-..++|.+-..|
T Consensus 41 v~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~s~ 76 (78)
T COG4238 41 VDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQSY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Confidence 345666666666666666666666666666655443
No 169
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=56.74 E-value=99 Score=26.00 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=10.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
...++..|.+.|++|+++++.+..
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 170
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.57 E-value=46 Score=29.45 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=35.7
Q ss_pred hchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 92 KNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 92 KNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++.+-+|+==..-..++..+..+...++.++++++.+..++..+++.++..+....
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555665555555666666666666666677777777777777766666655543
No 171
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=56.46 E-value=45 Score=24.89 Aligned_cols=30 Identities=3% Similarity=0.179 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 113 TEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 113 ~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
.++..|..+.++|+.|++....++..++-+
T Consensus 30 ~~~~kL~~en~qlk~Ek~~~~~qvkn~~vr 59 (87)
T PF10883_consen 30 KQNAKLQKENEQLKTEKAVAETQVKNAKVR 59 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777766543
No 172
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=56.31 E-value=40 Score=35.40 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=39.3
Q ss_pred HHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 95 GYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 95 gYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
|+|+..|.| ...+.+|+.+...|..++..+..+.+.+...++.+.+.++.
T Consensus 732 G~~aR~~~R-~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~ 781 (1353)
T TIGR02680 732 GAAARERAR-LRRIAELDARLAAVDDELAELARELRALGARQRALADELAG 781 (1353)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888887 66788888888888888888888887777777777766654
No 173
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=56.18 E-value=42 Score=25.49 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=32.1
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
|.+--|.|-.-|++.+..|..++.++..|+..||.+|-.+-
T Consensus 9 qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d 49 (96)
T PF11365_consen 9 QLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLD 49 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45556777777888888899999999999888888775544
No 174
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=56.03 E-value=1.2e+02 Score=25.13 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Q psy6769 76 LSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELH-AYSLKCEALIKFAAKHK 154 (164)
Q Consensus 76 Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d-~~K~k~e~L~~~~~~~~ 154 (164)
.|+.++..+|++=...+ |||- -|+.....|..+.-++..+..++..+++ .++.-|..+.......|
T Consensus 6 PTr~~L~~lk~rl~~a~-rg~~------------lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g 72 (209)
T TIGR00309 6 PTRMELLKLKDKLKMAK-RGYS------------LLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMG 72 (209)
T ss_pred CCHHHHHHHHHHHHHHH-HhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45666667766666655 6653 2777777888888888888888888888 77777887654433333
No 175
>PRK14158 heat shock protein GrpE; Provisional
Probab=55.68 E-value=50 Score=27.71 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=29.6
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
....|+.+...+..+++.++....++.-|.+.|+.+.+.
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777888888888888888888887766
No 176
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=55.46 E-value=38 Score=24.01 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=16.6
Q ss_pred CCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy6769 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQ 86 (164)
Q Consensus 52 i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKq 86 (164)
-.||++++..+ +-...+.+..|+|-+++..+=+
T Consensus 37 R~y~~~dv~~l--~~i~~L~~d~g~~l~~i~~~l~ 69 (91)
T cd04766 37 RRYSERDIERL--RRIQRLTQELGVNLAGVKRILE 69 (91)
T ss_pred eeECHHHHHHH--HHHHHHHHHcCCCHHHHHHHHH
Confidence 45666666554 2233322225676666655443
No 177
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=55.44 E-value=1.8e+02 Score=30.79 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=21.1
Q ss_pred CCCCChhhhhccc--HHH---HHHHHHhCCCCHHHHHHHHHHHhhhhchHHHH
Q psy6769 51 VIDISDDDLVTIS--VRD---LNRQLKMRGLSREDIIKMKQRRRTLKNRGYAA 98 (164)
Q Consensus 51 ~i~fSDeeLvsms--Vre---LN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQ 98 (164)
..|.++++|-.|+ ++. +...|. =..+.+..|+.+... -+.|++
T Consensus 214 l~~l~~~~i~~l~e~~~~~~~~~~~le---~l~~~~~~l~~i~~~--y~~y~~ 261 (1353)
T TIGR02680 214 LPPLDDDELTDVADALEQLDEYRDELE---RLEALERALRNFLQR--YRRYAR 261 (1353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHH
Confidence 3477888877663 222 222221 123444555555543 355655
No 178
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.44 E-value=2.1e+02 Score=29.64 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=57.0
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 61 smsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.....+++..++..+.++++...+.....++-. |+.=...--++...++.+...++.+.++...++....+++..++
T Consensus 448 ~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 524 (1201)
T PF12128_consen 448 KSELAELKQQLKNPQYTEEEKEQLEQADKRLEQ---AQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELR 524 (1201)
T ss_pred HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888999999888877666533 33333344455566666666777777777777777777777777
Q ss_pred HHHHHHH
Q psy6769 141 LKCEALI 147 (164)
Q Consensus 141 ~k~e~L~ 147 (164)
++++.|.
T Consensus 525 ~~~~~l~ 531 (1201)
T PF12128_consen 525 AQIAELQ 531 (1201)
T ss_pred HHHHHHH
Confidence 7776644
No 179
>KOG0999|consensus
Probab=55.33 E-value=99 Score=30.83 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=44.8
Q ss_pred HHHHHhhhhchHHHHhhHHHH-HHHHHHHhHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 84 MKQRRRTLKNRGYAASCRIKR-IEQKDELETEKSQEYQDMEL----------MEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 84 LKqrRRtLKNRgYAQnCR~KR-l~q~~~LE~e~~~L~~qie~----------L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
+.+.||+||--------|--| ++.-.+||.|+..|+.++.. |+.|+.++..|..-+++..+.+.++
T Consensus 147 ~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~L 223 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRL 223 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555433333344434 56778999999998887755 5678888888888888888775443
No 180
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.19 E-value=42 Score=29.80 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=29.0
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+....||.+...++..++.|..|++++...++.+-.++..|.
T Consensus 156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 445566777777777777777777777777766666666655
No 181
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=55.19 E-value=30 Score=27.53 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=30.4
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMK 85 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LK 85 (164)
..|-|+|..||-.|+..+|...|.+.||..++-
T Consensus 90 ~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~ 122 (129)
T PF13543_consen 90 VLTLEALLEMSDEELKEILNRCGAREEECRRLC 122 (129)
T ss_pred hcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 678999999999999999999999999988874
No 182
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=55.12 E-value=1e+02 Score=24.76 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=24.2
Q ss_pred CCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy6769 48 PSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQ 86 (164)
Q Consensus 48 p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKq 86 (164)
++.---+|++++..+ +-+ +.|+..|+|=+++..+=+
T Consensus 34 ~~gyR~Y~~~dl~rL--~~I-~~lr~~G~sL~eI~~ll~ 69 (172)
T cd04790 34 ESNYRLYGERDLERL--EQI-CAYRSAGVSLEDIRSLLQ 69 (172)
T ss_pred CCCCccCCHHHHHHH--HHH-HHHHHcCCCHHHHHHHHh
Confidence 344456788888877 333 346778999888776544
No 183
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.07 E-value=76 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
|+.+++.|+.+++.+.+|.....+.-++|
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 44455555555555444444433333333
No 184
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.03 E-value=55 Score=24.58 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=19.0
Q ss_pred hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 94 RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 94 RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
+||...- -..+.+|+.++..+.++++.|+.++.....|
T Consensus 41 ksYe~rw----ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 41 KSYEARW----EKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred hhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665442 2234455555555555555555555544444
No 185
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=54.99 E-value=72 Score=24.24 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=23.1
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+..|+.....|...++.+..++..+.+.++.+.+.++.+.
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566666666666666666655555544
No 186
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.93 E-value=79 Score=25.32 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.|..++..+++|+..+.++....+.+...|
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 187
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=54.84 E-value=66 Score=27.12 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=36.8
Q ss_pred HHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 96 YAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 96 YAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
....-|+.|+++-.+ .+++.|+++..++..+++...+|+|.|+..=+
T Consensus 115 ~eEr~Ry~rLQqssD---------~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIER 161 (179)
T PF13942_consen 115 SEERARYQRLQQSSD---------SELDALRQQQQRLQYQLDTTTRKLENLTDIER 161 (179)
T ss_pred HHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344567888875433 45899999999999999999999999995543
No 188
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=54.55 E-value=64 Score=31.30 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhhhch
Q psy6769 80 DIIKMKQRRRTLKNR 94 (164)
Q Consensus 80 ev~~LKqrRRtLKNR 94 (164)
+...|.+....|+..
T Consensus 151 E~eeL~~~~~~Le~e 165 (546)
T PF07888_consen 151 EKEELLKENEQLEEE 165 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 189
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.51 E-value=1e+02 Score=24.02 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=17.5
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
|+.++......+..|+.+++.+.+.++.+|..+
T Consensus 49 L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 49 LQAQNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555666666655554
No 190
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=54.49 E-value=1e+02 Score=24.00 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6769 134 EELHAYSLKCEALIKFA 150 (164)
Q Consensus 134 ~E~d~~K~k~e~L~~~~ 150 (164)
.+.+.++..+..|..+.
T Consensus 96 E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 96 EEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 191
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=54.46 E-value=84 Score=23.05 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=30.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
+.+..|..+...||..++.|-.....++.|-+.+++.-+.|+.+..
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777777777777777777777777666666543
No 192
>KOG2264|consensus
Probab=54.20 E-value=1.5e+02 Score=29.81 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=15.4
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
+-....++++.+.+-+.|+.+++-++++-+..++.|
T Consensus 112 ~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 112 INTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444
No 193
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=54.11 E-value=18 Score=33.65 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=18.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
++|-..|..|+..|.+|.+.|+.|++++..|
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666433
No 194
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=54.06 E-value=11 Score=36.00 Aligned_cols=37 Identities=8% Similarity=0.238 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy6769 121 DMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHI 157 (164)
Q Consensus 121 qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~i 157 (164)
+|++|++|+++++++++.+..++++..+.+....+.+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~~s~~d~lk~ 68 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEKHSAGDNLKF 68 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHhhhcCcEEE
Confidence 6777777777777777777777766665554444443
No 195
>PRK14148 heat shock protein GrpE; Provisional
Probab=53.96 E-value=55 Score=27.47 Aligned_cols=38 Identities=5% Similarity=0.091 Sum_probs=27.4
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
...|+.+...|..+++.++....++.-|.+.|+.+.++
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777777777777665
No 196
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.73 E-value=2e+02 Score=27.13 Aligned_cols=89 Identities=13% Similarity=0.269 Sum_probs=56.7
Q ss_pred hhhcccHHHHHHHHHhCC---CCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHH--HhH---HhHHHHHHHHHHHHHH
Q psy6769 58 DLVTISVRDLNRQLKMRG---LSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDE--LET---EKSQEYQDMELMEQDC 129 (164)
Q Consensus 58 eLvsmsVreLN~lLk~~g---Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~--LE~---e~~~L~~qie~L~~E~ 129 (164)
+++.-..+.+-+.|+.+| ..-+++..|-..||+++.+.=+-.-+.+++.+.-. +.. ....|.++++.++.++
T Consensus 5 k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l 84 (429)
T COG0172 5 KLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKL 84 (429)
T ss_pred HHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence 333335555666665564 33456777888888888777666666665654443 111 2356777777888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6769 130 NLMREELHAYSLKCEAL 146 (164)
Q Consensus 130 ~~l~~E~d~~K~k~e~L 146 (164)
..+..+.++.+.+.+.+
T Consensus 85 ~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 85 KELEAALDELEAELDTL 101 (429)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 88877777777777553
No 197
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=53.70 E-value=1.3e+02 Score=28.26 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=45.8
Q ss_pred chHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 93 NRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQD------------CNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 93 NRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E------------~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
||.|--+|.++=-+.-+.|-+.+..|+.-++.|+.. +..+.++++.....+..|..|..+
T Consensus 200 ~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~ 271 (424)
T PF03915_consen 200 NRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKT 271 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999987777788888888888888887754 455677777777777777766543
No 198
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=53.31 E-value=56 Score=29.19 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=18.5
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++.+..++..+...|..+...+.++++.++.++++|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444455555555555555555555555554443
No 199
>PRK14127 cell division protein GpsB; Provisional
Probab=52.98 E-value=48 Score=25.55 Aligned_cols=31 Identities=6% Similarity=0.202 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
+...+..++..|+.++.++..+++.|+.+..
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555556666666666666655555444
No 200
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=52.89 E-value=87 Score=22.77 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=21.9
Q ss_pred CCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHH
Q psy6769 49 SPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMK 85 (164)
Q Consensus 49 ~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LK 85 (164)
...-.||++++..+ +.+-. |+..|+|-+++..+-
T Consensus 34 ~g~R~Y~~~dl~~l--~~I~~-l~~~G~~l~ei~~~~ 67 (102)
T cd04775 34 ANYRLYSEADLSRL--EKIVF-LQAGGLPLEEIAGCL 67 (102)
T ss_pred CCCeeeCHHHHHHH--HHHHH-HHHCCCCHHHHHHHH
Confidence 33346888888754 33333 466899988887654
No 201
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=52.64 E-value=53 Score=24.17 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=23.9
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
+...++||.|+ +-|..+++.+.++++=|.+++..+++=.+
T Consensus 6 lk~mkeLEqEk-------d~LLqgLe~~Er~r~Wy~~qL~~vq~rq~ 45 (84)
T PF11414_consen 6 LKRMKELEQEK-------DVLLQGLEMEERERDWYQQQLQSVQERQR 45 (84)
T ss_dssp -HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677774 55555556666667777776666665433
No 202
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=52.62 E-value=79 Score=23.58 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=21.5
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA---LIKFAA 151 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~---L~~~~~ 151 (164)
|.-||.-...-..--.-+..++..+..|+..++.+++. +++||.
T Consensus 5 I~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~ 51 (86)
T PF12711_consen 5 IKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAM 51 (86)
T ss_pred HHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 33444433333333344445555555555555555554 555554
No 203
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=52.59 E-value=34 Score=30.00 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
.|..+.+.|++|+.++..+++.++.+.+..-.|....
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777766666554
No 204
>PRK01203 prefoldin subunit alpha; Provisional
Probab=52.58 E-value=42 Score=26.70 Aligned_cols=41 Identities=7% Similarity=0.043 Sum_probs=30.7
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
.+++.+...+++|++.|..+.+.+...+..+..-.+.|...
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~ 43 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDN 43 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35667777778888888888888888877777777777663
No 205
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.43 E-value=72 Score=28.03 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHcCCC
Q psy6769 142 KCEALIKFAAKHKIH 156 (164)
Q Consensus 142 k~e~L~~~~~~~~i~ 156 (164)
+++.|...+...++.
T Consensus 97 ~l~~l~~~aG~v~V~ 111 (247)
T COG3879 97 RLEKLRMLAGSVPVT 111 (247)
T ss_pred HHHHHHHHhccCCCc
Confidence 455566666655543
No 206
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=52.24 E-value=41 Score=25.18 Aligned_cols=30 Identities=7% Similarity=0.039 Sum_probs=22.4
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHA 138 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~ 138 (164)
..++.++.+|.+++.+|+.|++-+++...-
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888888888888888877765543
No 207
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.24 E-value=1.2e+02 Score=29.10 Aligned_cols=38 Identities=5% Similarity=0.233 Sum_probs=26.7
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.++.+..++..+.++|+.|..++...++.+..+++.+.
T Consensus 106 av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 106 AVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45566667777777777777777777777777766543
No 208
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=52.09 E-value=74 Score=24.32 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=5.5
Q ss_pred HHHHHHHHhhhh
Q psy6769 81 IIKMKQRRRTLK 92 (164)
Q Consensus 81 v~~LKqrRRtLK 92 (164)
+..+++.+-.+.
T Consensus 29 ~~~~~~~~~~l~ 40 (150)
T PF07200_consen 29 VQELQQEREELL 40 (150)
T ss_dssp -HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 209
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=51.99 E-value=53 Score=27.90 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=22.8
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
|..++..|++.++.+...++++..|+..++..+..+.
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666665544
No 210
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=51.98 E-value=49 Score=24.81 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=22.1
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
-|..+..|..++..+.+|+.++..+++.....-+.|.+
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666555544444443
No 211
>PRK14160 heat shock protein GrpE; Provisional
Probab=51.95 E-value=62 Score=27.54 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=27.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+...|+.+...|..+++.++....++..+.+.|+.+..+
T Consensus 62 e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 62 ENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666667777777777777777777777777665
No 212
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=51.70 E-value=70 Score=26.75 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 101 RIKRIEQKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 101 R~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
+.+.++.+..+|.+....+.|+++++.++..+...
T Consensus 157 ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 157 KAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777777777666666666666666655543
No 213
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=51.70 E-value=47 Score=29.92 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=43.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHI 157 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~i 157 (164)
.+.++|...+.+...++.+......+.+.+..+.++++.|-.-.+-.+|.|
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRI 195 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRI 195 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeE
Confidence 466778888888888888888888888899999999999999888887765
No 214
>KOG0612|consensus
Probab=51.31 E-value=1.9e+02 Score=31.09 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhh--chHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 78 REDIIKMKQRRRTLK--NRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 78 ~eev~~LKqrRRtLK--NRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
.+.+.++|..+-+|+ -+.-||.--+--.++..+.+.++..|.+++.++..|+.-..+..+..
T Consensus 471 ~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 471 EETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665 33444444444444555666666666666666666666666666665
No 215
>PHA02562 46 endonuclease subunit; Provisional
Probab=51.10 E-value=1.9e+02 Score=26.26 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=3.4
Q ss_pred CCCCChh
Q psy6769 51 VIDISDD 57 (164)
Q Consensus 51 ~i~fSDe 57 (164)
..+|+++
T Consensus 291 ~~~~~~~ 297 (562)
T PHA02562 291 TQQISEG 297 (562)
T ss_pred CCcCCCc
Confidence 4455544
No 216
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=50.83 E-value=83 Score=25.22 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=20.5
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+..|+.+...+...+..|..++..+..|.+.+-+.++...
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555444443
No 217
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=50.76 E-value=86 Score=25.34 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=27.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
.++.||.|+..+...|++-+.++..+.....++|.=
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knL 37 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNL 37 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888887777776666653
No 218
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=50.73 E-value=1.9e+02 Score=26.05 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHhhHHHHH---HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 76 LSREDIIKMKQRRRTLKNRGYAASCRIKRI---EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 76 Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl---~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
-.++.+..++.+|..+-+. |..-|.+|- .+..++=....++..+.+.+..++..++.+++.+-.+.+.|.
T Consensus 17 ~lk~~~~e~~ekR~El~~~--~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~ 89 (294)
T COG1340 17 QLKEEIEELKEKRDELRKE--ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELR 89 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888555433 222233322 133333334444444444444555555555555444444443
No 219
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.47 E-value=76 Score=25.73 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=26.0
Q ss_pred HHHhhHHHHHH---HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 96 YAASCRIKRIE---QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 96 YAQnCR~KRl~---q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
-|.-+=.++.+ +...|+........++++|+..+..+...+..++.+.+.|.
T Consensus 85 LAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 85 LAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444344333 34444555555555555555555555555555555555443
No 220
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=50.38 E-value=99 Score=22.67 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy6769 51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRR 88 (164)
Q Consensus 51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrR 88 (164)
.-.+|++++..+ +... .|+..|+|-+++..+=+-.
T Consensus 36 yR~Y~~~~l~~l--~~I~-~lr~~G~sL~eI~~~l~~~ 70 (113)
T cd01109 36 IRDFTEEDLEWL--EFIK-CLRNTGMSIKDIKEYAELR 70 (113)
T ss_pred CccCCHHHHHHH--HHHH-HHHHcCCCHHHHHHHHHHH
Confidence 346898888766 3333 4567899999988765543
No 221
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=50.26 E-value=1.2e+02 Score=26.97 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhhchHH
Q psy6769 78 REDIIKMKQRRRTLKNRGY 96 (164)
Q Consensus 78 ~eev~~LKqrRRtLKNRgY 96 (164)
++.+.-.|++|+++.+..+
T Consensus 137 E~sl~p~R~~r~~l~d~I~ 155 (271)
T PF13805_consen 137 EESLQPSRDRRRKLQDEIA 155 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhHHHHHHHH
Confidence 3445556666666655543
No 222
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=50.08 E-value=62 Score=23.03 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
.|+..|++|+..++.+..-.+..|+..+.|.-.+.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lg 36 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLG 36 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777664443
No 223
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.06 E-value=86 Score=25.92 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=21.8
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+...|+.+...+...++.|+..+..+.+.++.+|.+-..
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~ 138 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKA 138 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555556666665555555555443
No 224
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=50.04 E-value=47 Score=25.24 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=37.0
Q ss_pred hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 94 RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 94 RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
.||+..|.-. .++..++.+...|.+....|..|+..+..+.|.+..+...-+++
T Consensus 47 ~~~~~~~~l~--~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~ 100 (117)
T COG2919 47 NGAADVLQLQ--RQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGM 100 (117)
T ss_pred hhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCC
Confidence 5777776654 34557777777777778888888877777766666665554443
No 225
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=50.02 E-value=53 Score=23.63 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=18.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
+...|..+++.++.+++.+.-+++.++.+...|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555666666666666666655555443
No 226
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=49.85 E-value=1.4e+02 Score=24.42 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcC
Q psy6769 76 LSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHA-YSLKCEALIKFAAKHK 154 (164)
Q Consensus 76 Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~-~K~k~e~L~~~~~~~~ 154 (164)
-|+.++.++|++=.+.+ |||-- |+.....|..+..++..+..++.++++. ++.-|..|....-..|
T Consensus 8 pTr~~L~~lk~~l~~a~-rg~~l------------Lk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G 74 (204)
T PRK00373 8 PTRMELINLKRRLKLAE-RGHKL------------LKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEG 74 (204)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46666666666655555 66632 6666777777788888888777777775 6666777765554444
No 227
>PRK14140 heat shock protein GrpE; Provisional
Probab=49.74 E-value=70 Score=26.78 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+.+|+.+...+..+++.++....++.-|.+.|+.+.++
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~r 76 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQK 76 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666666666666665544
No 228
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=49.52 E-value=61 Score=29.47 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=22.5
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++.++..|..+.+.+..+..++.+|+..++.++++|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555566666666666666666666666664
No 229
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=49.47 E-value=28 Score=32.38 Aligned_cols=54 Identities=15% Similarity=0.311 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNL--MREELHAYSLKCEALI 147 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~--l~~E~d~~K~k~e~L~ 147 (164)
.|.|-+|...|||.=-+|| +|+..|..++++|..|..+ +....+-...+++++.
T Consensus 27 ~~~~~~e~~aLr~EN~~LK--------------------kEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~ 82 (420)
T PF07407_consen 27 EGVSIDENFALRMENHSLK--------------------KENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIV 82 (420)
T ss_pred cccchhhhhhHHHHhHHHH--------------------HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 5778888887776554444 4555555556666444433 2233333344555544
No 230
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=49.47 E-value=43 Score=23.61 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 113 TEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 113 ~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
.|+..|+.+|..|...++++..|-..+|+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356677777777777777777776666654
No 231
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=49.43 E-value=23 Score=23.16 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 102 IKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 102 ~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
.|...|..+|-+.++.+...+..|..+.+.+..|...++.+.
T Consensus 3 ~k~~~qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 345666777777777778888888888888888777766553
No 232
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=49.40 E-value=1.1e+02 Score=22.73 Aligned_cols=37 Identities=3% Similarity=0.090 Sum_probs=25.3
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhh
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLK 92 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLK 92 (164)
.+|++++..+.. .. .|+..|+|=+++..+=+......
T Consensus 37 ~Y~~~d~~~l~~--I~-~lr~~G~sl~eI~~~l~~~~~~~ 73 (116)
T cd04769 37 VYDAQHVECLRF--IK-EARQLGFTLAELKAIFAGHEGRA 73 (116)
T ss_pred eeCHHHHHHHHH--HH-HHHHcCCCHHHHHHHHhccccCC
Confidence 478888776532 22 35668999999988866665544
No 233
>PF12936 Kri1_C: KRI1-like family C-terminal; InterPro: IPR024626 The yeast member of the Kri1-like family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus []. This entry represents the C-terminal domain of this protein family.
Probab=49.40 E-value=37 Score=25.46 Aligned_cols=30 Identities=10% Similarity=0.443 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCChhhhhcccHHHHHHHHHhC
Q psy6769 44 PPLSPSPVIDISDDDLVTISVRDLNRQLKMR 74 (164)
Q Consensus 44 ~pl~p~~~i~fSDeeLvsmsVreLN~lLk~~ 74 (164)
..-+|.++ ++|.++|...+-+|||+.....
T Consensus 32 r~V~p~~f-GLt~~eIL~adDkeLNq~vsLK 61 (93)
T PF12936_consen 32 REVPPNSF-GLTTEEILMADDKELNQWVSLK 61 (93)
T ss_pred eecCcccC-CCCHHHHHhCCHHHHHHHhhHH
Confidence 45567666 9999999999999999975433
No 234
>PRK02224 chromosome segregation protein; Provisional
Probab=49.33 E-value=2.5e+02 Score=27.30 Aligned_cols=24 Identities=8% Similarity=-0.027 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhchHHHHhhHHHH
Q psy6769 81 IIKMKQRRRTLKNRGYAASCRIKR 104 (164)
Q Consensus 81 v~~LKqrRRtLKNRgYAQnCR~KR 104 (164)
+..++..|..++++--...=+..+
T Consensus 615 ~~~l~~~~~~~~~~l~~~r~~i~~ 638 (880)
T PRK02224 615 REALAELNDERRERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455544444444444
No 235
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=49.25 E-value=16 Score=30.15 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=8.2
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
-||.|+ .|.+.|+.++.|++.|...+|+.+
T Consensus 18 lLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 18 LLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355543 445555555555555555555555
No 236
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=49.08 E-value=1.1e+02 Score=22.94 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYA 97 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYA 97 (164)
+-.+.+++.+|+.++. +|+-|+-
T Consensus 35 R~Y~~~~l~~l~~I~~-lr~~G~~ 57 (118)
T cd04776 35 RVYSRRDRARLKLILR-GKRLGFS 57 (118)
T ss_pred cccCHHHHHHHHHHHH-HHHCCCC
Confidence 5689999999999987 8888874
No 237
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=49.04 E-value=83 Score=23.45 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=24.5
Q ss_pred CCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy6769 49 SPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQ 86 (164)
Q Consensus 49 ~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKq 86 (164)
...-.||++++..+. +=..|+..|+|=+++..+=+
T Consensus 33 ~gyR~Y~~~~l~~l~---~I~~lr~~G~~L~eI~~~l~ 67 (120)
T cd04781 33 GLRRQYDPQVLDRLA---LIALGRAAGFSLDEIQAMLS 67 (120)
T ss_pred CCceecCHHHHHHHH---HHHHHHHcCCCHHHHHHHHh
Confidence 334468999888874 33556778999888876543
No 238
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=48.97 E-value=1.1e+02 Score=24.12 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 103 KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 103 KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
.+-....+|+....-|.-.++.|.++-.++..+.+.+++++.++.+-
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566777888877788888888888888888888888877766543
No 239
>PRK14155 heat shock protein GrpE; Provisional
Probab=48.89 E-value=44 Score=28.27 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=28.6
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
..|+.+...+..+++.++....++.-|.+.|+.+.++
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~k 52 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAER 52 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777888888888888888888887766
No 240
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=48.84 E-value=51 Score=24.16 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 122 MELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 122 ie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++.|.+|+.++++|+..++..++.+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776666665554
No 241
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=48.77 E-value=39 Score=26.98 Aligned_cols=60 Identities=8% Similarity=0.199 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhhc-hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy6769 80 DIIKMKQRRRTLKN-RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKI 155 (164)
Q Consensus 80 ev~~LKqrRRtLKN-RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i 155 (164)
|+..+|+..+..-. =.||+..+. +++++++..|++.+..++..-+.+++.......-...
T Consensus 48 Ei~~l~~E~~~iS~qDeFAkwaKl----------------~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (161)
T PF04420_consen 48 EILQLKRELNAISAQDEFAKWAKL----------------NRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLT 108 (161)
T ss_dssp HHHHHHHHHTTS-TTTSHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444221 257777664 4457888888888888888888888887665544433
No 242
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.75 E-value=91 Score=23.22 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=32.7
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
.|.....++..+++.|..+.+.+...++.|..-.+.|..+-.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667778888888888888888888888887777777743
No 243
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=48.68 E-value=1.9e+02 Score=28.40 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPI 159 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~ 159 (164)
--+++|+.|......|+.+++.+.+.|..-..++||++.+
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~ 369 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQ 369 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHH
Confidence 4567788888888888888888888888888888887643
No 244
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.65 E-value=94 Score=22.63 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
+|.....+++.+++.+..+..++...+..|+.-.+.|..+-
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566677778888888888888887777777777776664
No 245
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=48.38 E-value=1e+02 Score=23.34 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
.+...|......++.+++.|..++..+...+..++.-.+.|..+.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666667777888888888888888888888888777777664
No 246
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=48.35 E-value=88 Score=21.52 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=9.0
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNL 131 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~ 131 (164)
..++.+...++.+-++|+.|.+.
T Consensus 34 ~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 34 QKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444333
No 247
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=48.34 E-value=1.2e+02 Score=23.18 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=21.3
Q ss_pred hhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 90 TLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 90 tLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
...-|+.|+==.+=|-.+++.|+.=+ ++|..|.+.-.+++|.+..+
T Consensus 53 ~f~krE~A~E~~Y~r~~EkEqL~~Lk-------~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 53 AFGKREAAQEEQYFRKKEKEQLKKLK-------EKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 34446666654444444444444443 33333333344444444433
No 248
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=48.27 E-value=1.2e+02 Score=22.99 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=24.7
Q ss_pred CCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy6769 48 PSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQ 86 (164)
Q Consensus 48 p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKq 86 (164)
++..-.+|++++..+. -. ..|+..|+|=++|..+-.
T Consensus 33 ~~gyR~Y~~~~l~~l~--~I-~~lr~lG~sL~eI~~~l~ 68 (127)
T TIGR02047 33 DNNYRVYTVGHVERLA--FI-RNCRTLDMSLAEIRQLLR 68 (127)
T ss_pred CCCCCcCCHHHHHHHH--HH-HHHHHcCCCHHHHHHHHH
Confidence 4445578888877653 22 235678999999988765
No 249
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=48.08 E-value=91 Score=26.59 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=29.4
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+..+..||+....+.+++..+.....++...+..+..|+..+.
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~ 133 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELR 133 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777777777777666654
No 250
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=47.83 E-value=74 Score=23.69 Aligned_cols=40 Identities=30% Similarity=0.437 Sum_probs=25.0
Q ss_pred HHHhhHHHHH----HHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 96 YAASCRIKRI----EQKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 96 YAQnCR~KRl----~q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
=|-++|-++. +.+..||+|...+...++....|+..+.+|
T Consensus 22 e~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 22 EAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3444444443 256667777777777777777777777665
No 251
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=47.68 E-value=10 Score=31.26 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=5.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 113 TEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 113 ~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
+|+..|+.++++|+.|+..|++|+ .+++|..
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 345555555666666666666666 5555543
No 252
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=47.64 E-value=1.2e+02 Score=24.40 Aligned_cols=36 Identities=8% Similarity=0.232 Sum_probs=28.9
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+||.-......+++.++.+.+.+.++++.++.+...
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688888888888888888888888888877776543
No 253
>KOG1962|consensus
Probab=47.38 E-value=73 Score=27.42 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+.+.|+++.+.+.+|-|.+..+++.|+
T Consensus 179 ~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 179 KKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 254
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.28 E-value=1.8e+02 Score=26.51 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhhh
Q psy6769 78 REDIIKMKQRRRTLK 92 (164)
Q Consensus 78 ~eev~~LKqrRRtLK 92 (164)
++++..+++.-..++
T Consensus 347 ~~~l~~l~~~l~~l~ 361 (451)
T PF03961_consen 347 KEELEKLKKNLKKLK 361 (451)
T ss_pred HHHHHHHHHHHHhhh
Confidence 334444444433333
No 255
>KOG3650|consensus
Probab=47.24 E-value=84 Score=24.68 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=39.5
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
+.|..+|+.....|.+.++..++|+-.++.|-..+-+=++.|-.
T Consensus 62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 67899999999999999999999999999999888888887754
No 256
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.17 E-value=1e+02 Score=27.49 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 101 RIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 101 R~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++--+-|++-|-++...+...+..+++|...-.++....|+.++.|+
T Consensus 107 k~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~ 153 (302)
T PF09738_consen 107 KSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLR 153 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555555555555544555555555555544
No 257
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=47.13 E-value=1.1e+02 Score=23.80 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=14.9
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
|-+++.+|......|..++....+-++.+++++..
T Consensus 35 L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 35 LAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 258
>KOG0250|consensus
Probab=47.09 E-value=1.4e+02 Score=31.29 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=18.6
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
+.+.|.+...|..+++++..+++++..|.+..+.++.
T Consensus 396 ~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 396 LEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555544443
No 259
>PRK14151 heat shock protein GrpE; Provisional
Probab=46.89 E-value=70 Score=26.30 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=25.7
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
...|+.+...+..+++.++...-++.-|.+.|+.+.++
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~k 59 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQ 59 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666777777777777777777776665
No 260
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=46.71 E-value=74 Score=28.93 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=23.5
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.++..|+.++..+..+.+++++|+.+++.|++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666777777777777777777766654
No 261
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=46.53 E-value=84 Score=21.76 Aligned_cols=41 Identities=7% Similarity=0.012 Sum_probs=28.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+..+|..+.+|...+-+...++.++.+.+..+..|+..+.
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556777788888888888888888888888888888876
No 262
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=46.43 E-value=84 Score=22.84 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=15.6
Q ss_pred CCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHH
Q psy6769 48 PSPVIDISDDDLVTISVRDLNRQLKMRGLSREDI 81 (164)
Q Consensus 48 p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev 81 (164)
+...-.||++++-.+ +-+. .|+ .|++=+++
T Consensus 33 ~~g~R~Y~~~~v~~l--~~I~-~l~-~g~~l~~i 62 (99)
T cd04772 33 ANGYRIYTDKHIAAL--RAYR-ALL-PGYGYRVA 62 (99)
T ss_pred CCCCeecCHHHHHHH--HHHH-HHh-hCCCHHHH
Confidence 444456788887553 2222 233 46665554
No 263
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.31 E-value=56 Score=30.67 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=34.2
Q ss_pred HHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 87 RRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 87 rRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
.++.+++|| =-..=++.+.+|+.+...+..+.+.|+.+.+.+.+++.
T Consensus 14 v~~~l~~r~----~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig 60 (429)
T COG0172 14 VREKLKKRG----GDALDVDKLLELDEERRKLLRELEELQAERNELSKEIG 60 (429)
T ss_pred HHHHHhhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776 11122677888888888888888888888888888775
No 264
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.30 E-value=94 Score=25.69 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=25.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+...+.....|..+++.++.....+...+..++++++.+.
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666666666654
No 265
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=46.30 E-value=1.3e+02 Score=23.29 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy6769 128 DCNLMREELHAYSLKCEALIKFAAKHKIHIP 158 (164)
Q Consensus 128 E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip 158 (164)
+...+..+++.+.+++..+..-....||.|-
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vK 74 (120)
T PF09969_consen 44 EVNGLEAELEELEARLRELIDEIEELGVEVK 74 (120)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHcCcEEe
Confidence 4455666666666667776666677777653
No 266
>PRK10698 phage shock protein PspA; Provisional
Probab=46.10 E-value=93 Score=26.14 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=42.2
Q ss_pred hhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHH---------------------------HHHHHH
Q psy6769 58 DLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKR---------------------------IEQKDE 110 (164)
Q Consensus 58 eLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KR---------------------------l~q~~~ 110 (164)
.++.+.++|....+.. + +..+..+...+++++.+.-...=+..+ .+++..
T Consensus 27 k~l~q~i~em~~~l~~--~-r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~ 103 (222)
T PRK10698 27 KLVRLMIQEMEDTLVE--V-RSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIAT 103 (222)
T ss_pred HHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777766532 2 445555555555555332221111111 123444
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
|+.+.......+++|+....++...+..+|.|-..|
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L 139 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSETRARQQAL 139 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555444
No 267
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.04 E-value=1.3e+02 Score=23.12 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=21.9
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNL----MREELHAYSLKCEALIKF 149 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~----l~~E~d~~K~k~e~L~~~ 149 (164)
...|+.+..+.+.+++.-+.+++. ...=++.+-..|..|+..
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~H 72 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQH 72 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443 444555555566665543
No 268
>PRK14157 heat shock protein GrpE; Provisional
Probab=45.97 E-value=63 Score=27.91 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=20.6
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
++.+...+..+++.++....++.-|.+.||.+.++
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~r 116 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQK 116 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666666666666665554
No 269
>PF14182 YgaB: YgaB-like protein
Probab=45.81 E-value=1.2e+02 Score=22.51 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=27.4
Q ss_pred HHHHHHhHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEY--QDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 106 ~q~~~LE~e~~~L~--~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+-..+.|.+...+. +.+..++.|..++++++..+...+++
T Consensus 24 ERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 24 ERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554 56777888888888888888777776
No 270
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=45.59 E-value=1.2e+02 Score=22.34 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=23.8
Q ss_pred CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy6769 51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRR 88 (164)
Q Consensus 51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrR 88 (164)
--.||++++..+ .+=..|+..|+|-+++..+=+-.
T Consensus 36 yR~Y~~~~i~~l---~~I~~lr~~G~sl~eI~~~l~~~ 70 (123)
T cd04770 36 YRLYGEADLARL---RFIRRAQALGFSLAEIRELLSLR 70 (123)
T ss_pred CccCCHHHHHHH---HHHHHHHHCCCCHHHHHHHHHhh
Confidence 347888888776 22334677899988887665433
No 271
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.46 E-value=1e+02 Score=29.48 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+.++.+.+.++++.+..|+..++.+.++
T Consensus 95 ~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 95 LNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555555543
No 272
>KOG0018|consensus
Probab=45.32 E-value=1.3e+02 Score=31.72 Aligned_cols=95 Identities=16% Similarity=0.245 Sum_probs=54.1
Q ss_pred hcccHHHHHHHHHhCCCCHHHHHHHHHHHhh----hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 60 VTISVRDLNRQLKMRGLSREDIIKMKQRRRT----LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 60 vsmsVreLN~lLk~~gLs~eev~~LKqrRRt----LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
..=+|.+++.-++ |+-+++-...|.+--. .|| ++=--+..+.+.+-......+..++.+|.+++..+...
T Consensus 812 ~~~~v~~~~~~~~--~~~~~e~~~~k~i~e~~~~e~k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ 885 (1141)
T KOG0018|consen 812 WERSVEDLEKEIE--GLKKDEEAAEKIIAEIEELEKKN----KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESK 885 (1141)
T ss_pred HHHHHHHHHHhHH--hhHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 3445667777663 5544444333332211 133 22222333444444455555566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCc
Q psy6769 136 LHAYSLKCEALIKFAAKHKIHIPIE 160 (164)
Q Consensus 136 ~d~~K~k~e~L~~~~~~~~i~ip~~ 160 (164)
++.+...-..|..+|+-..|-+|-.
T Consensus 886 ie~~~~er~~lL~~ckl~~I~vPl~ 910 (1141)
T KOG0018|consen 886 IERKESERHNLLSKCKLEDIEVPLS 910 (1141)
T ss_pred HHHHHHHHHHHHHHhhhcccccccc
Confidence 6666666667889999999998853
No 273
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=45.30 E-value=87 Score=25.82 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=17.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
|+.-+..|+.|+++.+..+..+..++..+...++.+
T Consensus 79 L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 79 LAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555554444444443
No 274
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=45.30 E-value=1.3e+02 Score=22.76 Aligned_cols=69 Identities=10% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETE-----------KSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e-----------~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
+-++.+++.+|+.+++ +|+=|+. ++++.++=.. ...+..+++.+..+.+++.+-++.+..+
T Consensus 37 R~Y~~~~~~~l~~I~~-lr~~G~s-------L~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (133)
T cd04787 37 RLYSEKDLSRLRFILS-ARQLGFS-------LKDIKEILSHADQGESPCPMVRRLIEQRLAETERRIKELLKLRDRMQQA 108 (133)
T ss_pred eeCCHHHHHHHHHHHH-HHHcCCC-------HHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q psy6769 143 CEALIKFA 150 (164)
Q Consensus 143 ~e~L~~~~ 150 (164)
+.....++
T Consensus 109 ~~~~~~~~ 116 (133)
T cd04787 109 VSQWQQMP 116 (133)
T ss_pred HHHHHhCC
No 275
>PRK14147 heat shock protein GrpE; Provisional
Probab=45.28 E-value=75 Score=25.96 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=25.7
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
.|+.+...|..+++.++....++.-|.+.|+.+.++
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~k 57 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLENQRKRIAR 57 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777777777777777777777665
No 276
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.23 E-value=1.6e+02 Score=23.74 Aligned_cols=20 Identities=10% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCHHHHHH
Q psy6769 64 VRDLNRQLKMRGLSREDIIK 83 (164)
Q Consensus 64 VreLN~lLk~~gLs~eev~~ 83 (164)
-.||..+.+..|-...++..
T Consensus 80 ~~ELael~r~~~el~~~L~~ 99 (194)
T PF08614_consen 80 QEELAELYRSKGELAQQLVE 99 (194)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 45566655555554444443
No 277
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=45.20 E-value=3.1e+02 Score=26.94 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=10.7
Q ss_pred HhhhhhccccCchhhHHH
Q psy6769 18 FILNFTLLIPCSKKNVEL 35 (164)
Q Consensus 18 ~~~~~~~~~~~~~~~~e~ 35 (164)
|++.-|++...-+.|.++
T Consensus 618 ~~lg~~~v~~~l~~a~~~ 635 (1164)
T TIGR02169 618 YVFGDTLVVEDIEAARRL 635 (1164)
T ss_pred HHCCCeEEEcCHHHHHHH
Confidence 455556666666666664
No 278
>PRK14141 heat shock protein GrpE; Provisional
Probab=45.18 E-value=66 Score=27.31 Aligned_cols=37 Identities=5% Similarity=-0.005 Sum_probs=26.4
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
..+|.+...|+.+++.++....++.-|.+.|+.+.++
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777777777777665
No 279
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=45.18 E-value=1.1e+02 Score=22.14 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 121 DMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 121 qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+++.+..+...+...+..+...++.
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 92 QLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333333
No 280
>KOG4687|consensus
Probab=45.14 E-value=62 Score=29.66 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 102 IKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 102 ~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.-.+..-+.|.....+|.-++..+--+++.+.-|||+||.|...|-
T Consensus 156 anfic~~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLn 201 (389)
T KOG4687|consen 156 ANFICAHEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLN 201 (389)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhh
Confidence 3456777888889999999999999999999999999999988865
No 281
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.09 E-value=1.1e+02 Score=29.35 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
.+...+.+|.++++.++..++..+..|.+-
T Consensus 109 ~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 109 SETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666543
No 282
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=45.08 E-value=1.4e+02 Score=23.73 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=41.1
Q ss_pred hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy6769 94 RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPI 159 (164)
Q Consensus 94 RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~ 159 (164)
|.+|.-|- .+.||.-...|..=++.-+.|......+......+++.+.....+.||.+-+
T Consensus 15 ra~~re~~------~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gis~~e 74 (135)
T PRK10947 15 RAQARECT------LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNE 74 (135)
T ss_pred HHHHHHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 56665553 3455555556666677777777777777777777888888888888887543
No 283
>PRK04406 hypothetical protein; Provisional
Probab=45.08 E-value=1.1e+02 Score=21.82 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=36.2
Q ss_pred HHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 101 RIKRIE-QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 101 R~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
|.-.|+ .+...|..+.+|...+-+..+++.++.+.+..+..++..+.
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444454 45567888888888888888888888888888888887765
No 284
>PRK14153 heat shock protein GrpE; Provisional
Probab=45.05 E-value=61 Score=27.22 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=38.1
Q ss_pred hCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 73 MRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 73 ~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
..|-|.++...||.. .....++.+...+..+++.++....++.-|.+.|+.+.+.
T Consensus 18 ~~~~~~~~~~~~~~~------------------~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~k 72 (194)
T PRK14153 18 NSGSSAEEAEELKEE------------------PEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAR 72 (194)
T ss_pred ccCCCHHHHHHHhhh------------------hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776666542 2344556666677777888888888888888888887765
No 285
>PRK14144 heat shock protein GrpE; Provisional
Probab=44.99 E-value=85 Score=26.55 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=20.3
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
|+.+...+..+++.++....++.-|.+.|+.+.+.
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~k 84 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVRRRMER 84 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555666666666666666666666554
No 286
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=44.89 E-value=1.2e+02 Score=22.18 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=35.1
Q ss_pred HhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 88 RRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 88 RRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.+.+.+=.-|=.=|.-+.+...++|.++..|..+..+|..++....-..+.++.-+..+
T Consensus 14 ~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 14 EAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333444444555555577777777777777777777776666666655554443
No 287
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=44.89 E-value=1.6e+02 Score=23.57 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYA 97 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYA 97 (164)
+-.|.+++.+|+.++. +|+-|+.
T Consensus 38 R~Y~~~dl~rL~~I~~-lr~~G~s 60 (172)
T cd04790 38 RLYGERDLERLEQICA-YRSAGVS 60 (172)
T ss_pred ccCCHHHHHHHHHHHH-HHHcCCC
Confidence 3467888888877776 6766653
No 288
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=44.86 E-value=87 Score=25.00 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIEL 161 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~~l 161 (164)
.-..|..+.++......+-.+.+..++...+.|.+++ +=+||+++
T Consensus 62 ~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa---~t~LPd~V 106 (135)
T TIGR03495 62 AQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWA---DTPLPDDV 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHh---cCCCcHHH
Confidence 3345556666666666777788888888889999994 55888875
No 289
>PRK14011 prefoldin subunit alpha; Provisional
Probab=44.65 E-value=53 Score=26.23 Aligned_cols=41 Identities=5% Similarity=-0.052 Sum_probs=26.2
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
.+-.+...+++|++.|..+.+.+...+..+..-.+.|....
T Consensus 7 ~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~ 47 (144)
T PRK14011 7 NQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK 47 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34445556667777777777777776666666666666443
No 290
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=44.51 E-value=13 Score=30.07 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=9.9
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIELAT 163 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~~l~~ 163 (164)
++...|+.++..++.++.+|..|+.-+..+...-.+++ .-.....|.+|.++..
T Consensus 15 ~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~l----q~se~~~~~Lpee~~~ 68 (181)
T PF09311_consen 15 QHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKL----QESEQEVAQLPEEVKH 68 (181)
T ss_dssp HHHHHHHHCCHHHHT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhcCcchHHH
Confidence 35666777766666666666666666666654444443 2225566777776653
No 291
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.43 E-value=80 Score=25.26 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhH---HhHHHHHHHHHHHHHHH
Q psy6769 77 SREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELET---EKSQEYQDMELMEQDCN 130 (164)
Q Consensus 77 s~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~---e~~~L~~qie~L~~E~~ 130 (164)
++.++..++..|-.+|.-.-. |=.++..|.. .+..|+.+++.|+.++.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~------~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKE------ADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 445566666666665544322 2234444444 55666666666666665
No 292
>KOG2264|consensus
Probab=44.36 E-value=74 Score=31.92 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=22.4
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+|.+|..++...+|.|++++.+-+.|+.++|-..++
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 455556666666666666666666666666666655
No 293
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=44.18 E-value=1.3e+02 Score=22.15 Aligned_cols=8 Identities=25% Similarity=0.488 Sum_probs=2.9
Q ss_pred HhhHHHHH
Q psy6769 98 ASCRIKRI 105 (164)
Q Consensus 98 QnCR~KRl 105 (164)
++=++..+
T Consensus 33 ~~~kY~~~ 40 (99)
T PF10046_consen 33 TSLKYKKM 40 (99)
T ss_pred HHHHHHHH
Confidence 33333333
No 294
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=44.14 E-value=37 Score=24.36 Aligned_cols=43 Identities=9% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCChhhhhcc------cHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHH
Q psy6769 53 DISDDDLVTI------SVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAA 98 (164)
Q Consensus 53 ~fSDeeLvsm------sVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQ 98 (164)
++|+++|-.+ .-++|=+.| |+|..+|..++...+.++.+-|+-
T Consensus 4 ~~t~~~l~~ia~~iG~~Wk~Lar~L---Gls~~dI~~i~~~~~~~~eq~~~m 52 (86)
T cd08318 4 PVTGEQITVFANKLGEDWKTLAPHL---EMKDKEIRAIESDSEDIKMQAKQL 52 (86)
T ss_pred CCCHHHHHHHHHHHhhhHHHHHHHc---CCCHHHHHHHHhcCCCHHHHHHHH
Confidence 5666665543 345566665 999999999997654444444443
No 295
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=44.09 E-value=70 Score=28.61 Aligned_cols=22 Identities=9% Similarity=0.070 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6769 124 LMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 124 ~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
.+-.-++.+.++.+.+.+++.+
T Consensus 97 ~m~shLe~VLk~K~~Lr~RLqk 118 (277)
T PF15003_consen 97 SMNSHLEAVLKEKDRLRQRLQK 118 (277)
T ss_pred HHHHHHHHHHHhHHHHHHHHHh
Confidence 3334444444555555555444
No 296
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=44.04 E-value=39 Score=28.88 Aligned_cols=40 Identities=18% Similarity=0.401 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHH
Q psy6769 75 GLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETE 114 (164)
Q Consensus 75 gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e 114 (164)
+=-.-++..++-.-|+.||+|+|+-|-.-++.++++|--.
T Consensus 152 p~K~~~vv~~~~lkkrFKeK~FAaG~~Rd~vR~~E~lG~~ 191 (212)
T COG2316 152 PDKDVRVVELSSLKKRFKEKGFAAGVNRDEVRQAEELGVD 191 (212)
T ss_pred CCCccccccHHHHHHHHHhhhhhccCCHHHHHHHHHhCCC
Confidence 3344467777888899999999999999999998887765
No 297
>PRK15396 murein lipoprotein; Provisional
Probab=43.35 E-value=1.2e+02 Score=22.07 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=13.1
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
+.++|..++..|..+++++..+.+.++..
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~ 54 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSD 54 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 298
>PRK10698 phage shock protein PspA; Provisional
Probab=43.35 E-value=1.2e+02 Score=25.41 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=34.5
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+....+.....|..++..|+..+..++...+.|+.++..-.
T Consensus 106 ~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 106 HEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777888889999999999999999999988887744
No 299
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.31 E-value=1.6e+02 Score=26.84 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
....++......+.+++..++.++..|..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 300
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=43.10 E-value=1.2e+02 Score=29.42 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=39.5
Q ss_pred hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 91 LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 91 LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
.|+.-|+..|+.=.. .....|.++..+..++..+...+.++..|+..-+.-|+.
T Consensus 434 SKa~~f~~Ec~aL~~-rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~ 487 (518)
T PF10212_consen 434 SKAVHFYAECRALQK-RLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEE 487 (518)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 699999999996422 244457777778888888888888888887766665554
No 301
>KOG4196|consensus
Probab=42.59 E-value=1.2e+02 Score=24.64 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=11.3
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCC
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLS 77 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs 77 (164)
++|.|+++.| +.=-+.||.+|.-
T Consensus 43 G~~reEVvrl--KQrRRTLKNRGYA 65 (135)
T KOG4196|consen 43 GLSREEVVRL--KQRRRTLKNRGYA 65 (135)
T ss_pred CCCHHHHHHH--HHHHHHHhhhhHH
Confidence 4555555544 2334456666643
No 302
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=42.41 E-value=1.6e+02 Score=23.41 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=24.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
++.++.+.......-+++|+.|+..=--|++.++.+++.+.+.
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555666666666666666666666665544
No 303
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=42.38 E-value=1.4e+02 Score=22.01 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=25.7
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHcCCC
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSL--------------KCEALIKFAAKHKIH 156 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~--------------k~e~L~~~~~~~~i~ 156 (164)
+-.+...+-.++=.|-.+...+..++..+|. .++.+..++.+.|++
T Consensus 8 lR~~ID~ID~qLv~LL~~R~~~~~~ia~~K~~~~~~v~dp~Re~~vl~~~~~~a~~~gl~ 67 (94)
T TIGR01795 8 LRQSIDNIDAAVIHMLAERFKCTSQVGVLKANAGLAPADPAREDYQIARLRRLAIDAGLD 67 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 3334444444455555555555555555554 456778888888764
No 304
>PRK15396 murein lipoprotein; Provisional
Probab=42.34 E-value=1.2e+02 Score=22.13 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
+...++.++..-+.|-+|..+.+|..-+.
T Consensus 47 dv~~~~~~~~~a~~eA~raN~RlDn~~~s 75 (78)
T PRK15396 47 DVNAMRSDVQAAKDDAARANQRLDNQATK 75 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333444444444444333
No 305
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=42.32 E-value=2.8e+02 Score=25.63 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
...+..++..+..++..+.++++.++.++..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444444444444444443
No 306
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=42.12 E-value=1.7e+02 Score=26.55 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy6769 140 SLKCEALIK 148 (164)
Q Consensus 140 K~k~e~L~~ 148 (164)
|.|+..|.+
T Consensus 193 K~KIR~lq~ 201 (342)
T PF06632_consen 193 KAKIRELQR 201 (342)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 307
>COG4518 Mu-like prophage FluMu protein gp41 [Function unknown]
Probab=42.06 E-value=17 Score=28.70 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=17.7
Q ss_pred CCChhhhhcccHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQL 71 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lL 71 (164)
|||.-||.++|.||||++-
T Consensus 76 P~S~rqi~~Ls~rDl~rl~ 94 (122)
T COG4518 76 PFSVRQILKLSSRDLARLQ 94 (122)
T ss_pred CcCHHHHHhhhHHHHHHHH
Confidence 8999999999999999964
No 308
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=41.85 E-value=25 Score=21.42 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=13.9
Q ss_pred HHHHHHhCCCCHHHHHH
Q psy6769 67 LNRQLKMRGLSREDIIK 83 (164)
Q Consensus 67 LN~lLk~~gLs~eev~~ 83 (164)
=|+-.+.+|||++|+..
T Consensus 7 rNrYV~eh~ls~ee~~~ 23 (28)
T PF12368_consen 7 RNRYVKEHGLSEEEVAE 23 (28)
T ss_pred chhhHHhcCCCHHHHHH
Confidence 47778889999999863
No 309
>PRK14145 heat shock protein GrpE; Provisional
Probab=41.69 E-value=1.1e+02 Score=25.73 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=22.7
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
..|+.+...+..+++.++....++.-|.+.||.+.++
T Consensus 48 ~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~k 84 (196)
T PRK14145 48 EELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEK 84 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666667777777766655
No 310
>KOG1962|consensus
Probab=41.65 E-value=88 Score=26.93 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=18.9
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
||.++..+..+.+.|+.|.+....+.+....+.++|.+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544444444444443
No 311
>PRK06285 chorismate mutase; Provisional
Probab=41.65 E-value=1.4e+02 Score=21.77 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=31.8
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHcCC
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLK--------------CEALIKFAAKHKI 155 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k--------------~e~L~~~~~~~~i 155 (164)
..+|-.+...+-.++-.|-.+...+..++..+|.. ++.+..++.+.|+
T Consensus 9 L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~~~~~v~dp~RE~~vl~~~~~~a~~~~l 70 (96)
T PRK06285 9 LNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKSLGMPIFDPEREDYIHEKIRKLCEEHNI 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhhhCCC
Confidence 44555566666677777777777777777777775 5566666655443
No 312
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=41.58 E-value=78 Score=26.29 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 119 YQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 119 ~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
..++.++..++..++..++.||+.|+++++
T Consensus 40 ~~q~~q~~~q~~ql~~Q~~q~k~~y~sltG 69 (220)
T TIGR02791 40 IEQMAALKTQYEQLSEQIEQYKQQYGSLTG 69 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344666777777777788888888888875
No 313
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=41.49 E-value=1e+02 Score=22.91 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhhhhc
Q psy6769 64 VRDLNRQLKMRGLSREDIIKMKQRRRTLKN 93 (164)
Q Consensus 64 VreLN~lLk~~gLs~eev~~LKqrRRtLKN 93 (164)
++.+|..|....+|.|+-..+...-.++|+
T Consensus 21 le~ve~rL~~~eLs~e~R~~lE~E~~~l~~ 50 (85)
T PF15188_consen 21 LEAVESRLRRRELSPEARRSLEKELNELKE 50 (85)
T ss_pred HHHHHHHHcccCCChHHHHHHHHHHHHHHH
Confidence 566777777777787777777755555553
No 314
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=41.22 E-value=2.1e+02 Score=23.79 Aligned_cols=69 Identities=13% Similarity=0.207 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhhchHHHHhhHHHHHH-HHHHHhHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 78 REDIIKMKQRRRTLKNRGYAASCRIKRIE-QKDELETEKSQEYQ--------DMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 78 ~eev~~LKqrRRtLKNRgYAQnCR~KRl~-q~~~LE~e~~~L~~--------qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.+||.-||.+=|..|++..+..=+.|..+ ++..++++...|.. +.+.|..+++.+...++.-..+...|
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888877766554 44455555444433 24444444444444444444444443
No 315
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=41.11 E-value=1.4e+02 Score=21.83 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHhhhhchHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGY 96 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgY 96 (164)
+-.|.+++.+|+.++. +|+=|.
T Consensus 37 R~Y~~~~l~~l~~I~~-lr~~G~ 58 (113)
T cd01109 37 RDFTEEDLEWLEFIKC-LRNTGM 58 (113)
T ss_pred ccCCHHHHHHHHHHHH-HHHcCC
Confidence 4578899999988874 666554
No 316
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=40.86 E-value=1.1e+02 Score=27.38 Aligned_cols=47 Identities=19% Similarity=0.129 Sum_probs=36.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKI 155 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i 155 (164)
..|+.....+..+.++|+..+.++..+++.++..++.+.+.......
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45667777788888888888888888888888888888877665554
No 317
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.83 E-value=89 Score=29.87 Aligned_cols=38 Identities=5% Similarity=0.180 Sum_probs=17.5
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+||++...|+++++.+.+++..+.+.++.+....+.|.
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444
No 318
>PRK00295 hypothetical protein; Provisional
Probab=40.66 E-value=1.2e+02 Score=21.06 Aligned_cols=41 Identities=5% Similarity=0.003 Sum_probs=32.5
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.....|..+.+|...+-+..+++.++.+.+..+..++..+.
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777888888888888888888888888888887765
No 319
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=40.49 E-value=1.7e+02 Score=23.60 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=35.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
..++|..+...++++++.|+.+...+...+..+..-.+.|..+-..-
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~ 53 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG 53 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677778888888888888888888888888777777776664444
No 320
>PRK10132 hypothetical protein; Provisional
Probab=40.46 E-value=1.7e+02 Score=22.41 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=24.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNL-MREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~-l~~E~d~~K~k~e~L~~~~~ 151 (164)
|++.|..+...|..+++.|.+.-.. ...+.+.++.|.+....-++
T Consensus 13 q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar 58 (108)
T PRK10132 13 GVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETR 58 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555443332 22456667777666554443
No 321
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.43 E-value=98 Score=24.67 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6769 131 LMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 131 ~l~~E~d~~K~k~e~L~~~~ 150 (164)
++.|.+|.+..+++++.+-.
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566677766676665443
No 322
>PRK12704 phosphodiesterase; Provisional
Probab=40.31 E-value=2.8e+02 Score=26.40 Aligned_cols=7 Identities=29% Similarity=0.430 Sum_probs=2.7
Q ss_pred Hhhhhch
Q psy6769 88 RRTLKNR 94 (164)
Q Consensus 88 RRtLKNR 94 (164)
|.+++.|
T Consensus 81 e~~L~qr 87 (520)
T PRK12704 81 RNELQKL 87 (520)
T ss_pred HHHHHHH
Confidence 3334333
No 323
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=40.25 E-value=2.4e+02 Score=27.59 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHH
Q psy6769 78 REDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEY 119 (164)
Q Consensus 78 ~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~ 119 (164)
++.+..|-..=+|||+.--...+|. .+||.....|.
T Consensus 28 qqr~~qmseev~~L~eEk~~~~~~V------~eLE~sL~eLk 63 (617)
T PF15070_consen 28 QQRMQQMSEEVRTLKEEKEHDISRV------QELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 4445555555566666665555554 44444444444
No 324
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=40.21 E-value=1.6e+02 Score=24.75 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=7.9
Q ss_pred hhhcccHHHHHHHH
Q psy6769 58 DLVTISVRDLNRQL 71 (164)
Q Consensus 58 eLvsmsVreLN~lL 71 (164)
-|+.|.-.++...+
T Consensus 69 ~L~~ld~~~~~~~l 82 (334)
T TIGR00998 69 VLVRLDPTNAELAL 82 (334)
T ss_pred EEEEECchHHHHHH
Confidence 35666666665443
No 325
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.21 E-value=3e+02 Score=26.02 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHhh---hhchHHHHhhHHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 82 IKMKQRRRT---LKNRGYAASCRIKRIE-QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 82 ~~LKqrRRt---LKNRgYAQnCR~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.++++.++- +.++.-.+.=...+++ ++..+|++...+..++.....++..+.+.++..-.++++|..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
No 326
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=40.18 E-value=1.8e+02 Score=23.80 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHH
Q psy6769 101 RIKRIEQKDELETEKSQEYQDMELM 125 (164)
Q Consensus 101 R~KRl~q~~~LE~e~~~L~~qie~L 125 (164)
|.+.......++.+....+.++++|
T Consensus 110 R~~~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 110 RQKLWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554
No 327
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.10 E-value=17 Score=26.89 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=15.7
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++.|..+...|..++..|+.++..+..+++.|+..-..|.
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~ 66 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQ 66 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 3445555555555555555555555555555555444443
No 328
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=39.95 E-value=1.3e+02 Score=30.36 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 103 KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 103 KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
|+-.++..++.++..+..+++.|+..+....+++..++.+++.|....+
T Consensus 361 kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 361 KKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666666677777666665443
No 329
>PRK14127 cell division protein GpsB; Provisional
Probab=39.95 E-value=1e+02 Score=23.82 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 121 DMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 121 qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+.+.+..|+.++..++..++.+++.+.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 330
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=39.90 E-value=1.3e+02 Score=22.37 Aligned_cols=32 Identities=6% Similarity=0.042 Sum_probs=14.1
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.|+.....+..+++.|...+..+.++++.+..
T Consensus 90 ~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 90 FLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344344444444444444444444444433
No 331
>KOG0250|consensus
Probab=39.89 E-value=1.4e+02 Score=31.43 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=37.7
Q ss_pred HhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 98 ASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 98 QnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++|..+..++++..|....+++.+++++..+...+...-++++.+++...
T Consensus 740 ~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~ 789 (1074)
T KOG0250|consen 740 AREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEI 789 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778888888888888888888888888777777777777666543
No 332
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.78 E-value=1.4e+02 Score=23.55 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=8.8
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
++.....+..++..++.......
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333333433333333333
No 333
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=39.66 E-value=22 Score=28.24 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 66 DLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 66 eLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
-|.|+| ..|+|++||..||..=++
T Consensus 2 GFDRLl-~~GFS~~eI~~LR~QF~~ 25 (140)
T PF13373_consen 2 GFDRLL-SAGFSPEEIQDLRSQFHS 25 (140)
T ss_pred chhHHH-HcCCCHHHHHHHHHHHHH
Confidence 477887 489999999999876443
No 334
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=39.56 E-value=93 Score=24.11 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
.++.+|++++.++.+|.+.+|-|++.|....
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665543
No 335
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=39.39 E-value=1.8e+02 Score=22.62 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=15.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.++..|+.|+.......++....+.++.+......
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~ 75 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALE 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544444444444444444443333333
No 336
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=39.26 E-value=4.6e+02 Score=27.25 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhhhhc
Q psy6769 64 VRDLNRQLKMRGLSREDIIKMKQRRRTLKN 93 (164)
Q Consensus 64 VreLN~lLk~~gLs~eev~~LKqrRRtLKN 93 (164)
-.++|.-|+..|...+.+..++++-..|+.
T Consensus 756 e~~~~~eL~~~GvD~~~I~~l~~~i~~L~~ 785 (1201)
T PF12128_consen 756 EQQYNQELAGKGVDPERIQQLKQEIEQLEK 785 (1201)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 356677788899999888888887766554
No 337
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=39.20 E-value=95 Score=29.60 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=30.8
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
..+.+...+..++..+.++.+++..|++.++.+.+.|..|
T Consensus 90 ~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455666777778888888888888888888888888776
No 338
>PRK09039 hypothetical protein; Validated
Probab=39.17 E-value=2.8e+02 Score=24.74 Aligned_cols=10 Identities=30% Similarity=0.355 Sum_probs=5.9
Q ss_pred CCCCchHHhh
Q psy6769 6 NPEPSYVFQL 15 (164)
Q Consensus 6 ~~~~~~~~~~ 15 (164)
|--|.||=-+
T Consensus 14 ~~wpg~vd~~ 23 (343)
T PRK09039 14 DYWPGFVDAL 23 (343)
T ss_pred CCCchHHHHH
Confidence 4567776444
No 339
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=39.07 E-value=1.2e+02 Score=21.74 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=23.1
Q ss_pred CCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy6769 50 PVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQ 86 (164)
Q Consensus 50 ~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKq 86 (164)
.--.+|++++..+.. + ..|+..|+|=+++..+-+
T Consensus 35 gyR~Y~~~~~~~l~~--I-~~lr~~G~~l~eI~~~l~ 68 (97)
T cd04782 35 GYRYYTLEQFEQLDI--I-LLLKELGISLKEIKDYLD 68 (97)
T ss_pred CCccCCHHHHHHHHH--H-HHHHHcCCCHHHHHHHHh
Confidence 344788888877632 2 235678999888877654
No 340
>PRK14161 heat shock protein GrpE; Provisional
Probab=39.05 E-value=1.1e+02 Score=25.32 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+...|..+++.++....++.-|.+.|+.+.++
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rkR~~k 58 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRKRLEK 58 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555544
No 341
>PRK14146 heat shock protein GrpE; Provisional
Probab=38.97 E-value=1.1e+02 Score=26.04 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=24.3
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
...|+.+...+..+++.++...-++.-+.+.|+.+.+.
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~k 93 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQ 93 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666777777777777777766655
No 342
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=38.80 E-value=2.7e+02 Score=24.30 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=24.5
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q psy6769 63 SVRDLNRQLKMRGLSREDIIKMKQRRRTL 91 (164)
Q Consensus 63 sVreLN~lLk~~gLs~eev~~LKqrRRtL 91 (164)
..+-+|+.|+..|+..++|..-|+++...
T Consensus 127 e~r~~nRILknaG~lPpwIeL~KEI~~~i 155 (221)
T PLN03085 127 AEDTLYRILSKNGCAPEWVELNKEIRGQI 155 (221)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34559999999999999999999998544
No 343
>KOG4005|consensus
Probab=38.69 E-value=1.1e+02 Score=27.29 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=27.3
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
+++.+|+.|+..|+.+-+.|+..+..+.-+-..+.+.++
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 478888888888888888887777666555444444444
No 344
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.65 E-value=2e+02 Score=26.05 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhhhchH--------HHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 78 REDIIKMKQRRRTLKNRG--------YAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 78 ~eev~~LKqrRRtLKNRg--------YAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
-+|...+..-|=..|++. |+=+=..+|+--++.|=.|+.-|..++.++..|++-++..+.-||.-++.
T Consensus 153 lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 153 LDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888888888774 56666667777899999999999999999999999999999999997774
No 345
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=38.65 E-value=1.8e+02 Score=25.08 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 121 DMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 121 qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++.+|..=+....+|||+.+.+|+.|.
T Consensus 34 qi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 34 QIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888899999999999987
No 346
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=38.57 E-value=1.1e+02 Score=25.39 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=8.3
Q ss_pred CCCCHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQ 86 (164)
Q Consensus 74 ~gLs~eev~~LKq 86 (164)
-+||++|-.+||.
T Consensus 24 ~~LsEeE~eeLr~ 36 (162)
T PF04201_consen 24 EGLSEEEREELRS 36 (162)
T ss_pred ccCCHHHHHHHHH
Confidence 4677777666554
No 347
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=38.54 E-value=1.3e+02 Score=22.20 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.2
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
.|.....+++.+++.|......+...+..++.-.+.|..+-
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~ 43 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLK 43 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555666777777777777777777777777777776553
No 348
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=38.53 E-value=14 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHhhHHH
Q psy6769 76 LSREDIIKMKQRRRTLKNRGYAASCRIK 103 (164)
Q Consensus 76 Ls~eev~~LKqrRRtLKNRgYAQnCR~K 103 (164)
+-++=|+-|..---.|++|||.++|-+=
T Consensus 11 ~V~DLVm~LqALa~~Le~rG~~AsCYtC 38 (105)
T PF08844_consen 11 FVQDLVMSLQALAIVLERRGYLASCYTC 38 (105)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeEEEec
Confidence 3455567777888889999999999653
No 349
>KOG2483|consensus
Probab=38.47 E-value=84 Score=27.17 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 101 RIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 101 R~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
=.|.++.|..|+........+++.|++|+..+++++..+.
T Consensus 100 L~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 100 LDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466788999999988888999999988888888766555
No 350
>PLN03217 transcription factor ATBS1; Provisional
Probab=38.44 E-value=1.1e+02 Score=23.23 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=14.1
Q ss_pred CCCChhhhhcccHHHHHHHH
Q psy6769 52 IDISDDDLVTISVRDLNRQL 71 (164)
Q Consensus 52 i~fSDeeLvsmsVreLN~lL 71 (164)
..||||||..+ |--|..+|
T Consensus 15 ~risddqi~dL-vsKLq~ll 33 (93)
T PLN03217 15 SRISEDQINDL-IIKLQQLL 33 (93)
T ss_pred CCCCHHHHHHH-HHHHHHHC
Confidence 48999999887 55566654
No 351
>PF13035 DUF3896: Protein of unknown function (DUF3896)
Probab=38.43 E-value=80 Score=22.19 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=26.0
Q ss_pred HHHHHhHHhHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELM---EQDCNLMREELHAYS 140 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L---~~E~~~l~~E~d~~K 140 (164)
.+..||-.+++|..++..+ ..|.+++..|+|.|.
T Consensus 10 tkk~lelkkq~lc~kls~~~ls~~er~qi~~eidnye 46 (61)
T PF13035_consen 10 TKKYLELKKQQLCKKLSSMHLSEKEREQIKLEIDNYE 46 (61)
T ss_pred HHHHHHHHHHHHHHHHhhcccCHHHHHHHHhhhhhHH
Confidence 3556888888888887765 467888888888775
No 352
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=37.70 E-value=83 Score=20.30 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K 140 (164)
.++..|+.++-+++.++..+.
T Consensus 27 ~~l~~LKk~kL~LKDei~~ll 47 (49)
T PF04325_consen 27 EELERLKKEKLRLKDEIYRLL 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655443
No 353
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=37.63 E-value=2e+02 Score=23.75 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6769 124 LMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 124 ~L~~E~~~l~~E~d~~K~k~ 143 (164)
..+..+.++.+|+|.+..|+
T Consensus 128 ~~~a~L~~v~~ERD~Lr~kL 147 (152)
T PF15186_consen 128 LTQAALQEVQKERDLLRWKL 147 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344556667777776654
No 354
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=37.62 E-value=1.7e+02 Score=21.69 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELET--EKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~--e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
+-+|.+++.+++.++. +|+-|+. .+.+.+..++-. +...+....+.+..++++...+++.++.+++.|
T Consensus 37 R~Y~~~~l~~l~~I~~-lr~~G~~----l~~I~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 37 GLFDDCALQRLRFVRA-AFEAGIG----LDELARLCRALDAGDGKQPEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred eecCHHHHHHHHHHHH-HHHcCCC----HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4479999999999955 8877874 333443333321 122355566667777777777777777666554
No 355
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=37.55 E-value=1.7e+02 Score=21.90 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=17.4
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
+..+|..++..|..+++++..+...++...++-|
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk 58 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAK 58 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554444333
No 356
>PRK14163 heat shock protein GrpE; Provisional
Probab=37.54 E-value=1.2e+02 Score=25.89 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=20.4
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
|+.+...+..+++.++...-++.-|.+.|+.+.++
T Consensus 45 l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 45 LTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666666666666666554
No 357
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=37.36 E-value=1e+02 Score=29.20 Aligned_cols=100 Identities=23% Similarity=0.379 Sum_probs=63.9
Q ss_pred hhhcccHHH-HHH--HHHhCCCCHHHHHHHHHHHhhhhch-------------HHHHhhHHHHHH--------HHHHHhH
Q psy6769 58 DLVTISVRD-LNR--QLKMRGLSREDIIKMKQRRRTLKNR-------------GYAASCRIKRIE--------QKDELET 113 (164)
Q Consensus 58 eLvsmsVre-LN~--lLk~~gLs~eev~~LKqrRRtLKNR-------------gYAQnCR~KRl~--------q~~~LE~ 113 (164)
+|.++||.+ |++ .|++.|=|.+....|++.==.+-|. .|+..-|.++.. .+..+|.
T Consensus 36 ~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~ 115 (560)
T PF06160_consen 36 ELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEE 115 (560)
T ss_pred HHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 445555432 332 2344677777777777776655543 456666666654 3455666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHI 157 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~i 157 (164)
+...+..+++.|...-..-+.+++.+|.+|..+.+-..++.-..
T Consensus 116 ~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~ 159 (560)
T PF06160_consen 116 DIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY 159 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 66666666666666667777899999999999887666654433
No 358
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=37.27 E-value=1.8e+02 Score=21.87 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=23.4
Q ss_pred CCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6769 50 PVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQR 87 (164)
Q Consensus 50 ~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqr 87 (164)
..-.||++++-.+. -. ..|+..|+|=+++..+=+.
T Consensus 35 g~R~Y~~~~l~~l~--~I-~~lr~~G~sL~eI~~~l~~ 69 (126)
T cd04785 35 GYRLYGAAHVERLR--FI-RRARDLGFSLEEIRALLAL 69 (126)
T ss_pred CccccCHHHHHHHH--HH-HHHHHCCCCHHHHHHHHhh
Confidence 34467888877652 22 3356789999998876553
No 359
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=37.17 E-value=1.9e+02 Score=22.12 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=28.8
Q ss_pred HHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 96 YAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 96 YAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
|=|+|.+ +.-.+.|+.-...|++..+.|+.--+.+.++++
T Consensus 56 Y~Qs~~Y--v~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~ 95 (97)
T PF15136_consen 56 YQQSRTY--VAMNERLQQARDQLKKKCEELRQAGEELERDIE 95 (97)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877 555566666667777777777777777777664
No 360
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=37.04 E-value=76 Score=23.43 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=10.4
Q ss_pred HHHHHHHHHHcCCCC
Q psy6769 143 CEALIKFAAKHKIHI 157 (164)
Q Consensus 143 ~e~L~~~~~~~~i~i 157 (164)
+..|.++|...|+.+
T Consensus 56 l~~l~~~A~~~gv~l 70 (144)
T PF04350_consen 56 LEDLNRLAKKSGVKL 70 (144)
T ss_dssp HHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHCCCeE
Confidence 455778888888865
No 361
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.03 E-value=1.2e+02 Score=28.01 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
++..|+.++++++.+++++..++++++.+...|..+...
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREG 110 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455556666666666666666666666666555543
No 362
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.98 E-value=1.6e+02 Score=21.36 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHH
Q psy6769 48 PSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKM 84 (164)
Q Consensus 48 p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~L 84 (164)
+...-.||++++..+. +=+.|+..|+|-+++..+
T Consensus 33 ~~g~R~Y~~~~l~~l~---~I~~l~~~G~~l~ei~~~ 66 (102)
T cd04789 33 ANGYRLYPDSDLQRLL---LIQQLQAGGLSLKECLAC 66 (102)
T ss_pred CCCCeeCCHHHHHHHH---HHHHHHHCCCCHHHHHHH
Confidence 3445578888887653 333456789998886553
No 363
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=36.91 E-value=76 Score=20.28 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
|+++|..|+..++.=..--..+.+|+.+|..|
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~n~ 33 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKELSNF 33 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 55666666665554444444566677777654
No 364
>KOG0500|consensus
Probab=36.80 E-value=2.1e+02 Score=27.88 Aligned_cols=92 Identities=22% Similarity=0.171 Sum_probs=60.0
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchH------HHHhhHHHHHHHH-HH-HhHHhHHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRG------YAASCRIKRIEQK-DE-LETEKSQEYQDMEL 124 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRg------YAQnCR~KRl~q~-~~-LE~e~~~L~~qie~ 124 (164)
++| +|--+|-+|+=+.|+ -.+++...++-.=|.-|+-+| +++.|+..-.++. .+ ||.+...++..++.
T Consensus 404 GYS--DlfvLskdDl~~aL~--eYP~a~~~L~~kgr~iL~kd~lld~~~~~~~~~~~d~~E~~~~~Le~~~~~l~~Rl~~ 479 (536)
T KOG0500|consen 404 GYS--DLFVLSKDDLWEALS--EYPDARKRLEEKGRQILHKDGLLDENELGAMQDPSDDEEKRDESLENEVVLLQLRLAR 479 (536)
T ss_pred ccc--eeeEeeHHHHHHHHH--hCCHHHHHHHHHHHHHhhhccccchhhhhhccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 455 478899999999994 668888888876677777665 6788887544332 22 57777666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 125 MEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 125 L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
+..|.. .....+++++..|....+
T Consensus 480 i~~e~~---~~~~km~qr~~~le~~~~ 503 (536)
T KOG0500|consen 480 ILDEYH---SSQQKMKQRLSVLEKQLK 503 (536)
T ss_pred HHhhhh---hhhHHHHHHHHHHHHHhh
Confidence 555554 333445555555554433
No 365
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.79 E-value=1.3e+02 Score=28.42 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=66.4
Q ss_pred hhhcccHH-HHHH--HHHhCCCCHHHHHHHHHHHhhhhch-------------HHHHhhHHHHHH--------HHHHHhH
Q psy6769 58 DLVTISVR-DLNR--QLKMRGLSREDIIKMKQRRRTLKNR-------------GYAASCRIKRIE--------QKDELET 113 (164)
Q Consensus 58 eLvsmsVr-eLN~--lLk~~gLs~eev~~LKqrRRtLKNR-------------gYAQnCR~KRl~--------q~~~LE~ 113 (164)
+|.++||. +|+. .|.+.|=|.+....|++.==.+-|. .|+..-|.++.. .+...|.
T Consensus 40 ~l~~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~ 119 (569)
T PRK04778 40 ELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEE 119 (569)
T ss_pred HHhcCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 3444 3345677777777777665543332 345555555443 4556677
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIP 158 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip 158 (164)
+...+..+++.|...-..-+.+++.+|.+|..+.+-..++.-..-
T Consensus 120 ~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G 164 (569)
T PRK04778 120 DIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFG 164 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 777777777777777777889999999999999987776655443
No 366
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=36.72 E-value=1.3e+02 Score=22.37 Aligned_cols=24 Identities=4% Similarity=0.151 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
|..+++.|..+..++..+.+..+.
T Consensus 29 Lss~V~~L~~kvdql~~dv~~a~a 52 (85)
T PRK09973 29 LASNVQTLNAKIARLEQDMKALRP 52 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 367
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=36.64 E-value=1.5e+02 Score=25.77 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=17.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
|+.|+.+|.++.++....+..-..++.+-++.++
T Consensus 64 l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fe 97 (228)
T PRK06800 64 LERERQQLLADREQFQEHVQQQMKEIEAARQQFQ 97 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444455555444443
No 368
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=36.59 E-value=70 Score=21.85 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
++.++.++++.|+.|+.+ ++-..-+-++.|..|+.
T Consensus 3 ~~~~l~~ei~~L~~el~~---~r~~vS~a~~~li~y~~ 37 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELER---ERIKVSKACKELIEYCE 37 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc---cceeHHHHHHHHHHHhc
Confidence 445666667777776655 33344556777888876
No 369
>cd04773 HTH_TioE_rpt2 Second Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD mainly contains the C-terminal or second repeat (rpt2) of these tandem MerR-like domain proteins.
Probab=36.53 E-value=1.7e+02 Score=21.47 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=22.7
Q ss_pred CCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6769 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQR 87 (164)
Q Consensus 52 i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqr 87 (164)
-.||++++..+. .+ ..|+..|+|-+++..+=+.
T Consensus 37 R~Y~~~dl~~l~--~I-~~lr~~G~~l~~I~~~l~~ 69 (108)
T cd04773 37 RVYDPSDVRDAR--LI-HLLRRGGYLLEQIATVVEQ 69 (108)
T ss_pred eeeCHHHHHHHH--HH-HHHHHCCCCHHHHHHHHHH
Confidence 458999887763 33 4456689998888766543
No 370
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=36.51 E-value=1.3e+02 Score=23.80 Aligned_cols=49 Identities=22% Similarity=0.128 Sum_probs=37.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcC
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA--LIKFAAKHK 154 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~--L~~~~~~~~ 154 (164)
+++-.|=.+...|.+++..|-.|+..+.-|.+.++.++.. +-..+.+..
T Consensus 15 ~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~ 65 (114)
T COG4467 15 EQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKE 65 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcc
Confidence 3566777788888888899999999999888888888876 555554443
No 371
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.32 E-value=1.8e+02 Score=21.51 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=23.8
Q ss_pred CCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6769 49 SPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQR 87 (164)
Q Consensus 49 ~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqr 87 (164)
+..-.+|++++..+. +=..|+..|+|-+++..+-+.
T Consensus 33 ~g~R~Y~~~~~~~l~---~I~~lr~~G~sl~eI~~~l~~ 68 (112)
T cd01282 33 NGYRDYDEAAVDRVR---QIRRLLAAGLTLEEIREFLPC 68 (112)
T ss_pred CCCeecCHHHHHHHH---HHHHHHHcCCCHHHHHHHHHH
Confidence 334567888877663 223456689999998877543
No 372
>PF10704 DUF2508: Protein of unknown function (DUF2508); InterPro: IPR019644 This entry represents a protein family of unknown function that is conserved in the firmicutes.
Probab=36.32 E-value=1.5e+02 Score=20.67 Aligned_cols=25 Identities=28% Similarity=0.099 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Q psy6769 133 REELHAYSLKCEALIKFAAKHKIHI 157 (164)
Q Consensus 133 ~~E~d~~K~k~e~L~~~~~~~~i~i 157 (164)
.-+..+.++||.-|.+-|+..||.+
T Consensus 46 iy~~k~ae~kY~fLlreAk~r~i~~ 70 (71)
T PF10704_consen 46 IYQLKAAEAKYFFLLREAKKRGIKG 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3566778899999999999999975
No 373
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=36.21 E-value=2.3e+02 Score=28.61 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIH 156 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ 156 (164)
.|+..++.+...+..++.++|..-..++.|..-..++|.+
T Consensus 132 ~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~ 171 (775)
T PF10174_consen 132 RLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLS 171 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 3333333334444444444444444555555555555554
No 374
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=36.17 E-value=1.5e+02 Score=20.80 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=21.0
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
...++.+...+..|...+-.+.+.+....+.-..+.+.+..-
T Consensus 35 i~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~ 76 (90)
T PF06103_consen 35 IDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEA 76 (90)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344455555555555555555555555554444444444433
No 375
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=36.07 E-value=2.6e+02 Score=26.13 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=8.4
Q ss_pred HHHHHHHHhCCCCHHHHH
Q psy6769 65 RDLNRQLKMRGLSREDII 82 (164)
Q Consensus 65 reLN~lLk~~gLs~eev~ 82 (164)
.+|-..|+.+|+|+.|..
T Consensus 375 ~~L~~~l~~~~~~~~qa~ 392 (445)
T cd00187 375 KALIEELEKLGFSEIQAD 392 (445)
T ss_pred HHHHHHHHhcCCCHHHHH
Confidence 334444444566665433
No 376
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.07 E-value=65 Score=25.80 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=15.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
..++.|...|..++++...+.+.+++..+.+...|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444444444444444443333
No 377
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=35.85 E-value=1.2e+02 Score=25.68 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=46.7
Q ss_pred CChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhch---HHHHhhHH-HH------HHHHHHHhHHhHHHHHHHH
Q psy6769 54 ISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNR---GYAASCRI-KR------IEQKDELETEKSQEYQDME 123 (164)
Q Consensus 54 fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNR---gYAQnCR~-KR------l~q~~~LE~e~~~L~~qie 123 (164)
+-.+-=|+++-+.||.+|...-=+.-+...+|..=-.+++. |+-.++.. +- ...+..|+.+...|+.+++
T Consensus 50 ~~~~skvti~Edtf~nll~~a~k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in 129 (181)
T PF04645_consen 50 VESDSKVTISEDTFNNLLLQAFKSNAEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEIN 129 (181)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334467777788887743333333333443332222221 33333221 11 2345566666666666665
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHHH
Q psy6769 124 L-----MEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 124 ~-----L~~E~~~l~~E~d~~K~k~e~ 145 (164)
. +..+++.+..|+++++.+++.
T Consensus 130 ~~~k~~~n~~i~slk~EL~d~iKe~e~ 156 (181)
T PF04645_consen 130 KNKKKDLNEEIESLKSELNDLIKEREI 156 (181)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4 344556666777777666654
No 378
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=35.67 E-value=1.2e+02 Score=30.44 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=21.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
..+.|......+....+.+..|..+++.|+..||.+=..
T Consensus 56 e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~r 94 (717)
T PF09730_consen 56 ENERLSQLNQELRKECEDLELERKRLREEIKEYKFREAR 94 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555666666554433
No 379
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.57 E-value=2.4e+02 Score=22.87 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhchHHHHhhHHHHHHH-----HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 78 REDIIKMKQRRRTLKNRGYAASCRIKRIEQ-----KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 78 ~eev~~LKqrRRtLKNRgYAQnCR~KRl~q-----~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
..++.+|+.-+-+|-+.-=...-..++.+. -+.++.+...|..+++.|..++.++......+..+...|
T Consensus 49 ~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rl 122 (158)
T PF09744_consen 49 EVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRL 122 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
No 380
>PRK14156 heat shock protein GrpE; Provisional
Probab=35.30 E-value=1.1e+02 Score=25.33 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=22.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
++.+...++.+++.++....++..|.+.||.+.+.
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~r 66 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANE 66 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666677777777666554
No 381
>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=35.00 E-value=82 Score=25.56 Aligned_cols=51 Identities=18% Similarity=0.045 Sum_probs=33.9
Q ss_pred HHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 95 GYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 95 gYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
|||+|-=..|=-.+..=+.....+..+..++.++......+-..++.+++.
T Consensus 24 GYarNfLiPkglAv~At~~n~~~~e~~r~~~e~~~~~~~~~a~~lk~~Le~ 74 (148)
T COG0359 24 GYARNFLIPKGLAVPATKGNLKLLEARRAKLEKKAAEELAEAEALKEKLEG 74 (148)
T ss_pred hhhhhhhccccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888887666554444444455555666677777777777777777777766
No 382
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.82 E-value=3.1e+02 Score=28.67 Aligned_cols=42 Identities=7% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 104 RIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 104 Rl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
++..+.+||.+...+..+++.+..+...+..++..++.+.+.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~ 920 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEK 920 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 455555555555555555555555554444444444443333
No 383
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=34.79 E-value=2e+02 Score=21.62 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=22.9
Q ss_pred CCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy6769 50 PVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQ 86 (164)
Q Consensus 50 ~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKq 86 (164)
..-.||++++..+- +=+.|+..|+|=+++..+=+
T Consensus 35 gyR~Y~~~~l~~l~---~I~~lr~~G~sL~eI~~~l~ 68 (127)
T TIGR02044 35 GYRTYTQQHLDELR---LISRARQVGFSLEECKELLN 68 (127)
T ss_pred CCeecCHHHHHHHH---HHHHHHHCCCCHHHHHHHHH
Confidence 34468888877653 23346678999888877644
No 384
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.77 E-value=2.4e+02 Score=22.72 Aligned_cols=62 Identities=11% Similarity=0.191 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 80 DIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 80 ev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+..++..+..|+++.- ..-.++.+.+..+..++.++..|.-+.+.+....+.++.....|.
T Consensus 117 ~l~~l~~~~~~L~~~~~------~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIK------DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554431 223455555555566666666666666666666666666565554
No 385
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.65 E-value=4e+02 Score=27.48 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=5.3
Q ss_pred hhhhccccCchhhH
Q psy6769 20 LNFTLLIPCSKKNV 33 (164)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (164)
+.-|+++..-+.|-
T Consensus 613 l~~t~Iv~~l~~A~ 626 (1163)
T COG1196 613 LGDTLVVDDLEQAR 626 (1163)
T ss_pred hCCeEEecCHHHHH
Confidence 33333333333333
No 386
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.54 E-value=1.9e+02 Score=21.46 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=7.6
Q ss_pred cccCchhhHHHHHhh
Q psy6769 25 LIPCSKKNVELLVNF 39 (164)
Q Consensus 25 ~~~~~~~~~e~l~~~ 39 (164)
-+++-+.+.+.+.++
T Consensus 28 ~~~e~~~~~~~l~~l 42 (129)
T cd00584 28 AIAEYEQAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555554
No 387
>PRK10204 hypothetical protein; Provisional
Probab=34.52 E-value=46 Score=23.10 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKR 104 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KR 104 (164)
.-||+.|..+|=+.|| |..|-+|||---
T Consensus 2 ~kLTDkQKsrlWeqrr---n~nfqaS~RLeG 29 (55)
T PRK10204 2 KKLTDKQKSRLWEQQR---NRNFQASRRLEG 29 (55)
T ss_pred ccchHHHHHHHHHHHH---hhhHHHHhhhcC
Confidence 4578889999888886 889999998543
No 388
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=34.32 E-value=2.3e+02 Score=26.94 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=46.4
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCc
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIH-IPIE 160 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~-ip~~ 160 (164)
++...++.+...+...+..|+.+-.+.+..++.++.++....+...+.++| ||++
T Consensus 386 ~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~ 441 (560)
T PF06160_consen 386 EQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPED 441 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 356677888888888899999999999999999999999999999999986 4543
No 389
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=34.30 E-value=2.5e+02 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.295 Sum_probs=12.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
++....+.+..++..+++++.++...+.
T Consensus 27 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 54 (378)
T TIGR01554 27 KELTAAALEKEELETDVEKLKEEIKLLE 54 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 390
>PRK02119 hypothetical protein; Provisional
Probab=34.25 E-value=1.7e+02 Score=20.71 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=34.0
Q ss_pred HHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 102 IKRIE-QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 102 ~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.-.|+ .....|..+.+|...+-+..+++.++.+.+..+..++..+.
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444 34567777888888888888888888888888888877764
No 391
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=34.12 E-value=1.7e+02 Score=20.83 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhhchHHHHhhHHHH--HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 81 IIKMKQRRRTLKNRGYAASCRIKR--IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 81 v~~LKqrRRtLKNRgYAQnCR~KR--l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
+..|+.-==-||-|.|--.=|-.+ -+...++.+++.+|..+++.|++|+....+.+......
T Consensus 9 i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 9 IDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444434466666655444332 23456666677667777777776666666665544433
No 392
>KOG0488|consensus
Probab=34.07 E-value=54 Score=29.16 Aligned_cols=44 Identities=30% Similarity=0.297 Sum_probs=33.6
Q ss_pred CCCCCChhhhhcc----------cHHHHHHHHHhCCCCHHHHHHHHHHHhh-hhc
Q psy6769 50 PVIDISDDDLVTI----------SVRDLNRQLKMRGLSREDIIKMKQRRRT-LKN 93 (164)
Q Consensus 50 ~~i~fSDeeLvsm----------sVreLN~lLk~~gLs~eev~~LKqrRRt-LKN 93 (164)
+..-|||.||..+ ||-|=-.+...-|||+.||..+=|=||| -||
T Consensus 175 sRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKr 229 (309)
T KOG0488|consen 175 SRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKR 229 (309)
T ss_pred chhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHH
Confidence 4568999999875 5555455666669999999999998877 554
No 393
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=34.04 E-value=81 Score=22.62 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=19.4
Q ss_pred HHhCCCCHHHHHHHHHHHhhhhchH
Q psy6769 71 LKMRGLSREDIIKMKQRRRTLKNRG 95 (164)
Q Consensus 71 Lk~~gLs~eev~~LKqrRRtLKNRg 95 (164)
|+.+|+|++++..||+-=|.+-..+
T Consensus 23 LrR~Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 23 LRRRGFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHTSS
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 4568999999999999888876444
No 394
>PRK04325 hypothetical protein; Provisional
Probab=33.97 E-value=1.7e+02 Score=20.69 Aligned_cols=41 Identities=12% Similarity=-0.008 Sum_probs=33.4
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.....|..+.+|...+-+..+++.++.+.+..+..++..+.
T Consensus 17 klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 17 QLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567888888888888888888888888888888887765
No 395
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=33.93 E-value=49 Score=28.14 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy6769 134 EELHAYSLKCEALIKFAAKHKIHIPI 159 (164)
Q Consensus 134 ~E~d~~K~k~e~L~~~~~~~~i~ip~ 159 (164)
.+++.+++||+.+..+|.+.|+.+.=
T Consensus 130 ~~~~~Lq~K~~~i~~WA~~~gvEv~F 155 (204)
T PF12633_consen 130 EERQLLQQKCDLIEQWAASFGVEVHF 155 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 56778889999999999999997753
No 396
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.85 E-value=4.2e+02 Score=27.40 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhhchHHHH
Q psy6769 78 REDIIKMKQRRRTLKNRGYAA 98 (164)
Q Consensus 78 ~eev~~LKqrRRtLKNRgYAQ 98 (164)
+.++..+++.+-++.++.-..
T Consensus 403 ~~~i~~l~~~~~~~~~~~~~~ 423 (1163)
T COG1196 403 KREIESLEERLERLSERLEDL 423 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666665555555443
No 397
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=33.78 E-value=1.7e+02 Score=25.80 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=12.2
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
+.+++.+...|...|++-+.|+++..+-
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKR 212 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKR 212 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 398
>KOG3215|consensus
Probab=33.75 E-value=3.2e+02 Score=23.80 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
..|+..|+..+|+.|--==|+-=+-+|-.++. +.|....+-+.+++-|+.++...+..+ .=++.|.+|.+...
T Consensus 68 ~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~----Eiersi~~a~~kie~lkkql~eaKi~r-~nrqe~~~l~kvis 140 (222)
T KOG3215|consen 68 ASLSQDEPSMLKTQRVIEMNLREIENLVQKKL----EIERSIQKARNKIELLKKQLHEAKIVR-LNRQEYSALSKVIS 140 (222)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHh
Confidence 56889999999999888888888888866654 456666666777777777777766543 23456777776644
No 399
>PRK00106 hypothetical protein; Provisional
Probab=33.73 E-value=4e+02 Score=25.74 Aligned_cols=9 Identities=0% Similarity=0.073 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy6769 134 EELHAYSLK 142 (164)
Q Consensus 134 ~E~d~~K~k 142 (164)
++.+..+.+
T Consensus 139 eeLee~~~~ 147 (535)
T PRK00106 139 KHIDEREEQ 147 (535)
T ss_pred HHHHHHHHH
Confidence 333333333
No 400
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=33.55 E-value=1.3e+02 Score=20.29 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
..|++|++.|..++..+......||
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777766666665554
No 401
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=33.53 E-value=38 Score=20.56 Aligned_cols=18 Identities=44% Similarity=0.713 Sum_probs=15.2
Q ss_pred hcccHHHHHHHHHhCCCC
Q psy6769 60 VTISVRDLNRQLKMRGLS 77 (164)
Q Consensus 60 vsmsVreLN~lLk~~gLs 77 (164)
-+|+|.||-..|+.+||+
T Consensus 2 ~~l~v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLS 19 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-
T ss_pred CcCcHHHHHHHHHHCCCC
Confidence 478999999999999986
No 402
>PRK12704 phosphodiesterase; Provisional
Probab=33.45 E-value=4.1e+02 Score=25.29 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=4.7
Q ss_pred HHHHHhhhhchH
Q psy6769 84 MKQRRRTLKNRG 95 (164)
Q Consensus 84 LKqrRRtLKNRg 95 (164)
++++-++|..|-
T Consensus 84 L~qrE~rL~~Re 95 (520)
T PRK12704 84 LQKLEKRLLQKE 95 (520)
T ss_pred HHHHHHHHHHHH
Confidence 333333444333
No 403
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.40 E-value=1.7e+02 Score=23.03 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=15.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
+|.++..|+..+..|..++..+...+...+.+.+
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444433
No 404
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=33.40 E-value=80 Score=24.64 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q psy6769 134 EELHAYSLKCEALIKFAAKHKIHIPIEL 161 (164)
Q Consensus 134 ~E~d~~K~k~e~L~~~~~~~~i~ip~~l 161 (164)
+-++..+...+.|.++..+.|+|+|.-.
T Consensus 54 ~~~~~~~~~i~~l~~ll~~e~ip~P~~~ 81 (166)
T PF11553_consen 54 KGLDLSQKQIEQLEKLLKEEGIPVPPGF 81 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 3445556678889999999999999865
No 405
>PRK09343 prefoldin subunit beta; Provisional
Probab=33.35 E-value=2.2e+02 Score=21.70 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 77 SREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 77 s~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+.+|+..|.+=-.-.|.=|=.=-.. -+-+.+.+|+....-+..+++.|..+...+.+.+..+..++..+.
T Consensus 43 ~~~EL~~L~~d~~VYk~VG~vlv~q-d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 43 ALEELEKLPDDTPIYKIVGNLLVKV-DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHcCCCcchhHHHhhHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333332222 345666777777777777777777777777777777777776654
No 406
>PRK02793 phi X174 lysis protein; Provisional
Probab=33.26 E-value=1.7e+02 Score=20.56 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=35.0
Q ss_pred HHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 101 RIKRIE-QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 101 R~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
|.-.|+ .+...|..+.+|...+-+..+++.++.+.+..+..++..+.
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444 44567778888888888888888888888888888887764
No 407
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=33.25 E-value=1.1e+02 Score=20.76 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=7.6
Q ss_pred hHHhHHHHHHHHHHHHHHHH
Q psy6769 112 ETEKSQEYQDMELMEQDCNL 131 (164)
Q Consensus 112 E~e~~~L~~qie~L~~E~~~ 131 (164)
+.|...|..+++++..++.+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIER 22 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33433333333333333333
No 408
>PHA02591 hypothetical protein; Provisional
Probab=33.22 E-value=45 Score=24.94 Aligned_cols=26 Identities=31% Similarity=0.643 Sum_probs=17.2
Q ss_pred ChhhhhcccHHHHHHHHHhCCCCHHHHHHHH
Q psy6769 55 SDDDLVTISVRDLNRQLKMRGLSREDIIKMK 85 (164)
Q Consensus 55 SDeeLvsmsVreLN~lLk~~gLs~eev~~LK 85 (164)
|.|+++++ +++| ...|+|.++|+.+=
T Consensus 44 ~~dd~~~v-A~eL----~eqGlSqeqIA~~L 69 (83)
T PHA02591 44 SEDDLISV-THEL----ARKGFTVEKIASLL 69 (83)
T ss_pred ccchHHHH-HHHH----HHcCCCHHHHHHHh
Confidence 56666665 4444 34699999888753
No 409
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.15 E-value=4.7e+02 Score=25.56 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchH--------------------HHHhhHHHHHHHH---------
Q psy6769 58 DLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRG--------------------YAASCRIKRIEQK--------- 108 (164)
Q Consensus 58 eLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRg--------------------YAQnCR~KRl~q~--------- 108 (164)
++..--+.|++.. .+...|-..|-+.|.+|-|-. .+..+=.+.+...
T Consensus 188 d~L~fq~~Ele~~----~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~ 263 (557)
T COG0497 188 DLLQFQLEELEEL----NLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGK 263 (557)
T ss_pred HHHHHHHHHHHhc----CCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChh
Q ss_pred -HHHhHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy6769 109 -DELETEKSQEYQDMELMEQDCNLMR-------EELHAYSLKCEALIKFAAKHKIHIPI 159 (164)
Q Consensus 109 -~~LE~e~~~L~~qie~L~~E~~~l~-------~E~d~~K~k~e~L~~~~~~~~i~ip~ 159 (164)
..+...+..-.-+++....|+.... .+++.+..++..|.++++++|.++++
T Consensus 264 l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~ 322 (557)
T COG0497 264 LSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIED 322 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHH
No 410
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=33.00 E-value=2.5e+02 Score=23.83 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=25.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 112 E~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
+.+...|++.+.+..-.+..+...++.-....+.|++.|.+
T Consensus 160 ~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 160 QAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666666666666777777654
No 411
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=32.91 E-value=97 Score=26.01 Aligned_cols=56 Identities=11% Similarity=0.209 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHhhHHH-HHHHHHHHhHHhHHHHHHHHHHHHHHH
Q psy6769 75 GLSREDIIKMKQRRRTLKNRGYAASCRIK-RIEQKDELETEKSQEYQDMELMEQDCN 130 (164)
Q Consensus 75 gLs~eev~~LKqrRRtLKNRgYAQnCR~K-Rl~q~~~LE~e~~~L~~qie~L~~E~~ 130 (164)
++...++..+=.++..|.+|-+...|-.- .+.+...+=.++..|..+++.|+.++.
T Consensus 210 kI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~ 266 (268)
T PF13234_consen 210 KIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLS 266 (268)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888888899999999999988543 333333344444555555555555443
No 412
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=32.88 E-value=1.7e+02 Score=20.35 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=28.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHcC
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLK--------------CEALIKFAAKHK 154 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k--------------~e~L~~~~~~~~ 154 (164)
|-.+...+-.++-.|-.+...+..++..+|.. ++.+..++...|
T Consensus 4 lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~K~~~g~~i~d~~RE~~v~~~~~~~~~~~~ 61 (83)
T TIGR01791 4 LRQEIEEIDKSILDLIEKRIKIARKIGEIKHNNGLPITDEEREERVIERLRNTARNLG 61 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHhcC
Confidence 33455555666666667777777777777665 456666776655
No 413
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=32.80 E-value=46 Score=23.37 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.2
Q ss_pred hhhhcccHHHHHHHHHhCCCC
Q psy6769 57 DDLVTISVRDLNRQLKMRGLS 77 (164)
Q Consensus 57 eeLvsmsVreLN~lLk~~gLs 77 (164)
-+|..||+.+|-..|+.+|++
T Consensus 41 Aelag~s~~eF~~~L~~~gI~ 61 (76)
T PF03683_consen 41 AELAGMSRWEFLELLKERGIP 61 (76)
T ss_pred HHHhCCCHHHHHHHHHHCCCC
Confidence 379999999999999999987
No 414
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.79 E-value=4.9e+02 Score=25.98 Aligned_cols=71 Identities=14% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 69 RQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 69 ~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
...+..|++++-+.+=+..=-..+... -.-+..|+.+..++..+.+.+.+...++.+....|+.+.+.|..
T Consensus 487 ~iA~~~Glp~~ii~~A~~~~~~~~~~~---------~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 487 EIAQRYGIPHFIIEQAKTFYGEFKEEI---------NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHhCcCHHHHHHHHHHHHhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 415
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.39 E-value=42 Score=32.04 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=8.2
Q ss_pred HHHHHHHhHHhHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDME 123 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie 123 (164)
++|+++|++|+.+|++|++
T Consensus 30 ~qkie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444433
No 416
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=32.35 E-value=1.3e+02 Score=22.27 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
.+++.|..++..+.+|||.+...+.-
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~~ 44 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILAL 44 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888776653
No 417
>PHA01750 hypothetical protein
Probab=32.34 E-value=1.6e+02 Score=21.47 Aligned_cols=29 Identities=7% Similarity=0.236 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.+++.|+.|.+.+....|.+.++.+.+.+
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566666666666666666666655544
No 418
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=32.26 E-value=1.7e+02 Score=28.76 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
+..+..|+.++..|+.++..+..++..+.+|+..-...++....
T Consensus 78 ~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~ 121 (632)
T PF14817_consen 78 ARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLD 121 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 419
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.24 E-value=2e+02 Score=20.85 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=24.1
Q ss_pred CCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6769 49 SPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQR 87 (164)
Q Consensus 49 ~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqr 87 (164)
+..-.++++++-.+ + +=..|+..|+|=+|+..+=+-
T Consensus 32 ~g~r~Y~~~~~~~l--~-~I~~lr~~G~sL~eI~~~l~~ 67 (107)
T cd04777 32 GGQYFFDEKCQDDL--E-FILELKGLGFSLIEIQKIFSY 67 (107)
T ss_pred CCccccCHHHHHHH--H-HHHHHHHCCCCHHHHHHHHHh
Confidence 33446888877433 2 334567789999999887543
No 420
>KOG0249|consensus
Probab=32.22 E-value=1.5e+02 Score=30.33 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=32.9
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
++.+.-|+.+...+..+++.++.++.++......+.+..++|.+
T Consensus 215 le~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777774
No 421
>PRK14160 heat shock protein GrpE; Provisional
Probab=32.21 E-value=1.3e+02 Score=25.60 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
.++.+++.|..++..+..+++.++.+|-.
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR 86 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLR 86 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 422
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=32.20 E-value=2.5e+02 Score=23.02 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=21.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 112 E~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
+........+..++..++.....+++..|.+|+.+++
T Consensus 104 ~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~k 140 (251)
T cd07653 104 RQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFK 140 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555666666666666666666666666553
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.18 E-value=2.6e+02 Score=27.75 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHhhH---HHHHHH-HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 96 YAASCR---IKRIEQ-KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 96 YAQnCR---~KRl~q-~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
|.+.+| ..|.+. +.+++.-+..|+.++++...++..+..+++.+..+-++|..
T Consensus 544 a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 544 ATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 424
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.94 E-value=1e+02 Score=23.85 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCCCCcc
Q psy6769 128 DCNLMREELHAYSLKCEALIKFAAK--------HKIHIPIEL 161 (164)
Q Consensus 128 E~~~l~~E~d~~K~k~e~L~~~~~~--------~~i~ip~~l 161 (164)
-...+...++.+-..+..|...+.. ..++||.|+
T Consensus 27 s~~~L~~ki~~lv~~L~~l~~~~~~~~~~~~~~~~~~IP~ev 68 (128)
T PF09748_consen 27 SQEALNQKINQLVTSLQELDKLAQQTNDPDSPLQDIQIPLEV 68 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccccCCCCHHH
Confidence 3456667777888888888899888 789999875
No 425
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=31.71 E-value=2.1e+02 Score=24.54 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=11.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
++..++.+...++.+++.++.++....++
T Consensus 152 ~i~~~~~~i~~~~~~l~~~~~~l~~~~~~ 180 (423)
T TIGR01843 152 QIKQLEAELAGLQAQLQALRQQLEVISEE 180 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333333
No 426
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.68 E-value=92 Score=24.01 Aligned_cols=40 Identities=20% Similarity=0.105 Sum_probs=16.5
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREEL-HAYSLKCEALIKFA 150 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~-d~~K~k~e~L~~~~ 150 (164)
.+.+..+-++++..==..-+.+..++ +.|+.=|+.|..=+
T Consensus 37 ~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a 77 (128)
T PF06295_consen 37 AKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGA 77 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444223333333333 23555566555433
No 427
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=31.52 E-value=2e+02 Score=25.98 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=27.3
Q ss_pred HHHHhHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 108 KDELETEKSQEYQDMELMEQ----------DCNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~----------E~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
+..|+.+...+..++++|.. ++..+.+.++.+..+.+.+..+....|
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~ 300 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYG 300 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555555555555544 356666667777777777777655544
No 428
>PF15294 Leu_zip: Leucine zipper
Probab=31.44 E-value=2.4e+02 Score=25.20 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=29.3
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
..+..|..|+..|+..+..+..+-..+.+|...+++.+..|+..+
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~ 176 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQ 176 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666677777777777777633
No 429
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=31.39 E-value=2.5e+02 Score=23.39 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
...+.+..|..++..+..+++.+|.+|..+..
T Consensus 194 ~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 194 FAERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666543
No 430
>KOG4657|consensus
Probab=31.38 E-value=3.7e+02 Score=23.77 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=28.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 103 KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 103 KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
+|-.....+|.+...++++++.|..-+.-++.|.|.+|.
T Consensus 83 ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~ke 121 (246)
T KOG4657|consen 83 EKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKE 121 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344455667777777888888888777777777777665
No 431
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=31.28 E-value=1.9e+02 Score=22.41 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMR-EELHAYSLKCEALIKFA 150 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~-~E~d~~K~k~e~L~~~~ 150 (164)
.+++|..|...|-...+.+.+.-.... .|-+.+|.|.+++.+=+
T Consensus 9 ~~~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~ 53 (104)
T COG4575 9 AIDQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEA 53 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 447788888888777777776665554 56778888888766443
No 432
>PHA02047 phage lambda Rz1-like protein
Probab=31.26 E-value=2.4e+02 Score=21.87 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=5.3
Q ss_pred cCCCCCCcc
Q psy6769 153 HKIHIPIEL 161 (164)
Q Consensus 153 ~~i~ip~~l 161 (164)
.+-|+|+.+
T Consensus 82 aD~PVPpaV 90 (101)
T PHA02047 82 ADRPVPPAV 90 (101)
T ss_pred ccCCCChHH
Confidence 355777654
No 433
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.25 E-value=1.3e+02 Score=21.54 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=10.5
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~ 136 (164)
|+.+...+..++..+..++..+...+
T Consensus 75 l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 75 LEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444333
No 434
>PRK01203 prefoldin subunit alpha; Provisional
Probab=31.24 E-value=1.6e+02 Score=23.42 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=29.3
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.|..-++.+...|++|++.|+...+++...++.++.
T Consensus 7 ~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 7 AQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466778888888888888888888888888887766
No 435
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.02 E-value=2.2e+02 Score=20.98 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYA 97 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYA 97 (164)
+-.|.+++.+|+.++. +|+=|..
T Consensus 37 R~Y~~~~i~~l~~I~~-lr~~G~s 59 (123)
T cd04770 37 RLYGEADLARLRFIRR-AQALGFS 59 (123)
T ss_pred ccCCHHHHHHHHHHHH-HHHCCCC
Confidence 4578899999988876 5766654
No 436
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=31.00 E-value=4e+02 Score=24.04 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 78 REDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 78 ~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
..++..++..|+-+-++. ...+++...|-.+...+..++..++.+...+....+.+-+.|..+..-..
T Consensus 33 ~~~~~~~~ekRdeln~kv------rE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 33 RKEASELAEKRDELNAKV------RELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777888777654332 22344555555566666666666666666666666666666666554433
No 437
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=30.96 E-value=1.9e+02 Score=20.54 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=15.0
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
+...++.+...|+.+-++|+-|.+.+.
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555555544
No 438
>KOG1853|consensus
Probab=30.94 E-value=1.2e+02 Score=27.47 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 78 REDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 78 ~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
+.|+..++++=|-+--|. |.-++--..-++.+|....+-.++++.|..+++++.
T Consensus 51 esqL~q~etrnrdl~t~n--qrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~ 104 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRN--QRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTH 104 (333)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666776666554332 112222222344455555555555555555555443
No 439
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=30.71 E-value=2.5e+02 Score=21.54 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=23.7
Q ss_pred CCCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHH
Q psy6769 47 SPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMK 85 (164)
Q Consensus 47 ~p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LK 85 (164)
+++..-.||++++..+. |=+.|+..|+|-+++..+=
T Consensus 35 ~~~gyR~Y~~~~l~rL~---~I~~lr~~G~~L~eI~~ll 70 (120)
T TIGR02054 35 TTSGYGIFDDASLQRLR---FVRAAFEAGIGLGELARLC 70 (120)
T ss_pred CCCCCeeCCHHHHHHHH---HHHHHHHcCCCHHHHHHHH
Confidence 34445578888877662 3345567899988886554
No 440
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=30.67 E-value=2.5e+02 Score=22.40 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=17.7
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
+.++..=....+++++.++.++..+.+|+.+++..|
T Consensus 48 lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~ 83 (126)
T PF07028_consen 48 LKNLSKIQESQRSELKELKQELDVLSKELQALRKEY 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344455555555555555555555443
No 441
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=30.65 E-value=1.6e+02 Score=25.78 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=22.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.+..+|+.....++.+.+.+++|+..++++++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666667666666665554
No 442
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=30.51 E-value=2.2e+02 Score=20.87 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.++..|..+++.+..+++.+..+++.+
T Consensus 81 ~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 81 AEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544443
No 443
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=30.37 E-value=1.6e+02 Score=25.82 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=31.0
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
...|+.+...|+.+.+.|+.|++.+..+.+..++=.+.+.
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~ 73 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVA 73 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888877776555544
No 444
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=30.37 E-value=2.1e+02 Score=24.48 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=48.7
Q ss_pred hhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 58 DLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 58 eLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
+........|+.-| +.+-..++..+...|+.|-||-=+-.|.++|+..+. + .+++...++.....+.....+.
T Consensus 106 ~~d~~i~~~fl~pL--~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~k~~--e---eelr~a~ekFees~E~a~~~M~ 178 (223)
T cd07614 106 SLDIEVKQNFIDPL--QNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIP--D---EELRQAMEKFEESKEVAETSMH 178 (223)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--h---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456677766 455577899999999999999999999888875321 1 2344444444444444444444
Q ss_pred HHHH
Q psy6769 138 AYSL 141 (164)
Q Consensus 138 ~~K~ 141 (164)
.+..
T Consensus 179 ~il~ 182 (223)
T cd07614 179 NLLE 182 (223)
T ss_pred HHHh
Confidence 4443
No 445
>PHA02109 hypothetical protein
Probab=30.26 E-value=1.5e+02 Score=25.50 Aligned_cols=31 Identities=10% Similarity=0.019 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
.|+..|...++-+.+|...+|.|+..+....
T Consensus 193 ~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 193 KQISELTIKLEALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666655443
No 446
>KOG1029|consensus
Probab=30.24 E-value=5.4e+02 Score=27.02 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=26.6
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
-++.++|++|...-..+++-+..++..++.+.....-+++.|+
T Consensus 548 kdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~y 590 (1118)
T KOG1029|consen 548 KDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELY 590 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777776666666666666666655554444444444
No 447
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.23 E-value=5.1e+02 Score=25.00 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 126 EQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 126 ~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
..|..++.+|.+..++-|+.|..
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~ 397 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLT 397 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888898888888888663
No 448
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=30.23 E-value=1.8e+02 Score=24.06 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCN 130 (164)
Q Consensus 118 L~~qie~L~~E~~ 130 (164)
|+.++.++..|+.
T Consensus 34 Lr~EL~KvEeEI~ 46 (162)
T PF04201_consen 34 LRSELAKVEEEIQ 46 (162)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 449
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.22 E-value=2.7e+02 Score=21.85 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=17.9
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
+|..+..+.+.+++.+..+..++..+.+.+..+...+..+
T Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 148 ELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444443
No 450
>PF13166 AAA_13: AAA domain
Probab=30.22 E-value=4.8e+02 Score=24.68 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=18.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchH
Q psy6769 63 SVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRG 95 (164)
Q Consensus 63 sVreLN~lLk~~gLs~eev~~LKqrRRtLKNRg 95 (164)
.+.++|.....+ .+.+..+++....++++.
T Consensus 371 ~i~~~n~~i~~~---n~~~~~~~~~~~~~~~~~ 400 (712)
T PF13166_consen 371 IIDELNELIEEH---NEKIDNLKKEQNELKDKL 400 (712)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 466777765332 346667777666666554
No 451
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.19 E-value=2.2e+02 Score=23.08 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=10.4
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~ 136 (164)
|+.+...+..++..+..++..+.+++
T Consensus 34 L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 34 LRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333334444444444444333
No 452
>PRK00736 hypothetical protein; Provisional
Probab=30.16 E-value=1.9e+02 Score=20.11 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=30.4
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+-..|..+..|...+-+..+++.++.+.+..+..++..+.
T Consensus 14 lafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 14 VAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456777777888888888888888888888888777654
No 453
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.05 E-value=2.6e+02 Score=23.97 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
++++.....+..+..+++..|.....+...|++..+.....+++
T Consensus 45 ~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 45 LQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 454
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=29.99 E-value=5.1e+02 Score=25.80 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=11.7
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMR-GLSREDIIKMKQR 87 (164)
Q Consensus 64 VreLN~lLk~~-gLs~eev~~LKqr 87 (164)
..|.-..|..+ +++++|...|=+.
T Consensus 395 ~~~~~~~l~~~f~~~~~q~~~il~m 419 (738)
T TIGR01061 395 KSDAKENLIDNFKFTENQAEAIVSL 419 (738)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhh
Confidence 33444434333 6776665555443
No 455
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=29.99 E-value=2.7e+02 Score=21.78 Aligned_cols=54 Identities=13% Similarity=0.056 Sum_probs=33.3
Q ss_pred HHHHHhHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q psy6769 107 QKDELETEKSQEYQDM-ELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE 160 (164)
Q Consensus 107 q~~~LE~e~~~L~~qi-e~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~~ 160 (164)
+...|+..+..+..+. ..++.|..-+.-=+..+-.|......-.+..|.+++++
T Consensus 63 ~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVSdd 117 (136)
T PF04871_consen 63 EVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEVSDD 117 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCccCC
Confidence 3344454444444433 44555555555555566677788888888899998654
No 456
>PHA01750 hypothetical protein
Probab=29.91 E-value=2e+02 Score=21.07 Aligned_cols=35 Identities=9% Similarity=0.152 Sum_probs=23.7
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
..+|...|..|++.++.....+.+.+.++|.|+++
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 34455666777777777777777777777777654
No 457
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.90 E-value=4.2e+02 Score=24.13 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6769 131 LMREELHAYSLKCEALI 147 (164)
Q Consensus 131 ~l~~E~d~~K~k~e~L~ 147 (164)
+.++|+..+|+-++...
T Consensus 121 EARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666666555443
No 458
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=29.83 E-value=74 Score=21.21 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=21.3
Q ss_pred cccHHHHHHHHH---hCCCCHHHHHHHHHHHhhhhchH
Q psy6769 61 TISVRDLNRQLK---MRGLSREDIIKMKQRRRTLKNRG 95 (164)
Q Consensus 61 smsVreLN~lLk---~~gLs~eev~~LKqrRRtLKNRg 95 (164)
.+++.++=+.|. ..|||.+|+.+-+ .+=++|.-
T Consensus 3 ~~~~~~v~~~l~t~~~~GLs~~ev~~r~--~~~G~N~l 38 (69)
T PF00690_consen 3 QLSVEEVLKRLNTSSSQGLSSEEVEERR--KKYGPNEL 38 (69)
T ss_dssp TSSHHHHHHHHTTBTSSBBTHHHHHHHH--HHHSSSST
T ss_pred CCCHHHHHHHHCcCCCCCCCHHHHHHHH--Hhcccccc
Confidence 456777777775 6899998876432 12367754
No 459
>KOG4643|consensus
Probab=29.83 E-value=1.7e+02 Score=31.01 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.-|+++++.--..+-++..|+|.+|..|+.|.
T Consensus 187 r~LrqElEEK~enll~lr~eLddleae~~klr 218 (1195)
T KOG4643|consen 187 RTLRQELEEKFENLLRLRNELDDLEAEISKLR 218 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334455555566555555554
No 460
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=29.73 E-value=2.1e+02 Score=20.51 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
+-+|.+++..++.++. +++-|+- ++++..+-.... ....+.|......+..+++.++...+.|...
T Consensus 37 R~y~~~di~~l~~i~~-lr~~g~~-------l~~i~~~~~~~~--~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 102 (103)
T cd01106 37 RLYTEEDLERLQQILF-LKELGFS-------LKEIKELLKDPS--EDLLEALREQKELLEEKKERLDKLIKTIDRT 102 (103)
T ss_pred eeeCHHHHHHHHHHHH-HHHcCCC-------HHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 461
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=29.71 E-value=60 Score=28.21 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=12.2
Q ss_pred HHHHHHHhHHhHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELM 125 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L 125 (164)
++.+..||+|...|++||.++
T Consensus 121 lqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566777766666555544
No 462
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.62 E-value=3.8e+02 Score=23.33 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=21.0
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
++.+|..+...+..+++.++.++.++.++..++++..+.
T Consensus 111 el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~ 149 (239)
T COG1579 111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555554444
No 463
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=29.60 E-value=1.8e+02 Score=25.27 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=29.8
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
++.++..-|.-|.+.+.++..+..-....++.||..|..++++
T Consensus 19 ~~k~~~~~la~~~~~~~~~~~r~~~d~~~~~~K~deLedr~~s 61 (228)
T PF06721_consen 19 HAKSEHATLAYQRTVMGQERDRCQDDAEKMNVKFDELEDRISS 61 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 4555666666667777777777777777777777777766654
No 464
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=29.57 E-value=3.2e+02 Score=22.78 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=12.3
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
.||.++..|..++...+.....+..++|
T Consensus 201 ~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 201 KLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 465
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.31 E-value=1.9e+02 Score=21.04 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=8.4
Q ss_pred hhhcccHHHHHHHH
Q psy6769 58 DLVTISVRDLNRQL 71 (164)
Q Consensus 58 eLvsmsVreLN~lL 71 (164)
-+|..++.+....|
T Consensus 55 vfv~~~~~ea~~~L 68 (105)
T cd00632 55 VLVKQEKEEARTEL 68 (105)
T ss_pred HHhhccHHHHHHHH
Confidence 45566666666655
No 466
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=29.27 E-value=2.2e+02 Score=20.53 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=26.6
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREE---LHAYSLKCEA 145 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E---~d~~K~k~e~ 145 (164)
..+|-.|+.+|..++.....|......+ ++.++..|+.
T Consensus 5 v~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK 45 (69)
T PF08912_consen 5 VANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEK 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888877777766644 4666666665
No 467
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=29.21 E-value=81 Score=25.38 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=27.2
Q ss_pred CCChhhhhcccHHHHHHHHHh-------CCCCHHHHHHHHHHHh
Q psy6769 53 DISDDDLVTISVRDLNRQLKM-------RGLSREDIIKMKQRRR 89 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~-------~gLs~eev~~LKqrRR 89 (164)
+++-|+|..||..||-.+|.. +|++..+...+|..+.
T Consensus 9 G~~l~~L~~m~~~e~~~l~~ar~RRs~~RG~~~~~~~Llkki~k 52 (135)
T TIGR01025 9 GYTLEELQDMSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRK 52 (135)
T ss_pred ccCHHHHHcCCHHHHHHHcCcccCcccccCCchhhHHHHHHHHH
Confidence 678899999999999887632 4666666666666553
No 468
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=29.07 E-value=2.1e+02 Score=20.30 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6769 134 EELHAYSLKCEALIKFAA 151 (164)
Q Consensus 134 ~E~d~~K~k~e~L~~~~~ 151 (164)
+.-.++|.+|+.|..|-.
T Consensus 24 Q~N~~Mker~e~l~~wqe 41 (68)
T PF11577_consen 24 QNNQAMKERFEELLAWQE 41 (68)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666666665543
No 469
>KOG0996|consensus
Probab=29.06 E-value=4e+02 Score=28.72 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHH---HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 75 GLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQ---KDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 75 gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q---~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
-.+.+++...+..++++| -+|+.|-.++.+- ...+|.+......+++.+.+....+.++++.-+.+
T Consensus 359 ~e~~~~~~k~e~~~~~~~--e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~ 427 (1293)
T KOG0996|consen 359 IESNEEVEKNEAVKKEIK--ERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRK 427 (1293)
T ss_pred hhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 377888888888888886 4455555444332 23344444444444444444444444444433333
No 470
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.96 E-value=2.5e+02 Score=20.96 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=23.2
Q ss_pred HHHhHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELM--EQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L--~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+.+...+.+..+++.| +.+...+.-++..++.++..+.
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455555566666666 6666666666666666655544
No 471
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=28.94 E-value=1.6e+02 Score=25.54 Aligned_cols=52 Identities=12% Similarity=0.304 Sum_probs=33.7
Q ss_pred hHHHHhhHHHHHHHH--HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 94 RGYAASCRIKRIEQK--DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 94 RgYAQnCR~KRl~q~--~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+-|-+.||..+.... ..-+.+...-..++++++........+.+.-+..|+.
T Consensus 140 k~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~ 193 (258)
T cd07680 140 KAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEK 193 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999997776542 2222233334567777777777777777766666665
No 472
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=28.92 E-value=1.9e+02 Score=22.61 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=20.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 112 E~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
|-|++++++.|..|.-|......-...++.++.+|-
T Consensus 24 eiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE 59 (134)
T PF08232_consen 24 EIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLE 59 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666655555556666655543
No 473
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.92 E-value=2e+02 Score=19.89 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=29.9
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
...++.....++.+.+.++.+++.+.+.+..+-.=|+..+
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777888888888888888888888866665565544
No 474
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.88 E-value=5.2e+02 Score=24.71 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=8.7
Q ss_pred cCchhhHHHHHhhh
Q psy6769 27 PCSKKNVELLVNFV 40 (164)
Q Consensus 27 ~~~~~~~e~l~~~~ 40 (164)
+....+++.+..+.
T Consensus 340 ~~~~~~~~~l~~~l 353 (650)
T TIGR03185 340 ALPAEHVKEIAAEL 353 (650)
T ss_pred cCCHHHHHHHHHHH
Confidence 55556677776643
No 475
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=28.78 E-value=2.7e+02 Score=22.10 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=34.0
Q ss_pred hchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 92 KNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 92 KNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
|-+||+-+= ..|-.|...++.+...|+.+.+.|+-+...+....+.-+
T Consensus 59 KH~~~~~Sl-a~r~~~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~ 106 (120)
T PF04521_consen 59 KHKGLYESL-AWRHAQLSDLNLELEKLERREEQLKTQIQVLTAAAKLAK 106 (120)
T ss_pred hHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 557777654 345678888888888888888888887777666554433
No 476
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=28.62 E-value=1.9e+02 Score=24.74 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHhh-hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRT-LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRt-LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
-|-|..--..|=.+||. |. --|++...|-.++..+..++..|+.|+..+..-.+..+.
T Consensus 102 e~Pse~YWk~lAE~RR~AL~----------eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~ 160 (200)
T PF07412_consen 102 EGPSENYWKELAEERRKALE----------EALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQY 160 (200)
T ss_dssp SSCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776 54 347888888888888888899999888777665554443
No 477
>PF14645 Chibby: Chibby family
Probab=28.54 E-value=1.6e+02 Score=22.73 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=8.8
Q ss_pred HHHhHHhHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCN 130 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~ 130 (164)
..|+.|+..|+-+++-|-.=++
T Consensus 81 ~~L~EENN~Lklk~elLlDMLt 102 (116)
T PF14645_consen 81 QQLEEENNLLKLKIELLLDMLT 102 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 478
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=28.52 E-value=2.1e+02 Score=21.87 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6769 129 CNLMREELHAYSLKCEAL 146 (164)
Q Consensus 129 ~~~l~~E~d~~K~k~e~L 146 (164)
+.++++..+.+|+||+.|
T Consensus 66 NerLqqa~~~Lkkk~e~L 83 (97)
T PF15136_consen 66 NERLQQARDQLKKKCEEL 83 (97)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444443
No 479
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=28.50 E-value=2.8e+02 Score=21.44 Aligned_cols=49 Identities=10% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHhhHHHHHHHHHHHhH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 97 AASCRIKRIEQKDELET-EKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 97 AQnCR~KRl~q~~~LE~-e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
||-=..+++.+...... +...|+.+++..-+-+..+...++.+-.+++.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444433333222 22333333333333334444444444444433
No 480
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=28.47 E-value=42 Score=27.61 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCCCCChhhhhcccHHHHHHHHHhCCCC
Q psy6769 50 PVIDISDDDLVTISVRDLNRQLKMRGLS 77 (164)
Q Consensus 50 ~~i~fSDeeLvsmsVreLN~lLk~~gLs 77 (164)
-.++++...|-.|+|++|-..|..+|.+
T Consensus 95 k~idl~~~Dl~KlrVk~LK~iL~~~g~~ 122 (154)
T PF10208_consen 95 KKIDLSTVDLKKLRVKQLKKILDDWGED 122 (154)
T ss_dssp -S-SCCCTSTTTTCHHHHHHHHHHHTTT
T ss_pred cccchhhhHHhhCcHHHHHHHHHHcCCC
Confidence 3568999999999999999999999875
No 481
>PHA02557 22 prohead core protein; Provisional
Probab=28.47 E-value=1.8e+02 Score=26.07 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 99 SCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 99 nCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.|.--+++++.+|+.+.....++++.+..++..+...++.+++
T Consensus 134 ~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r 176 (271)
T PHA02557 134 VVPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKR 176 (271)
T ss_pred CCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999999999999999988887765
No 482
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=28.35 E-value=2.6e+02 Score=23.85 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=32.1
Q ss_pred HHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 101 RIKRIE-QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 101 R~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++..++ +...++.....+...+++|+.....+...+..++++.+.|.
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 55666777777777777777777777777777777766654
No 483
>KOG2751|consensus
Probab=28.26 E-value=2.2e+02 Score=27.22 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=22.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
++++..||.+..++.-++..++.+..++.++.+.|-+.|.
T Consensus 196 ~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~ 235 (447)
T KOG2751|consen 196 LQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYN 235 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555544
No 484
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=28.25 E-value=2.3e+02 Score=20.43 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 119 YQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 119 ~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
...++.|..+...+..+++.++.++..+.
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~ 111 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLE 111 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 485
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.22 E-value=1e+02 Score=23.05 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=25.8
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCCCC
Q psy6769 126 EQDCNLMREEL-----HAYSLKCEALIKFAAKHKIHIPI 159 (164)
Q Consensus 126 ~~E~~~l~~E~-----d~~K~k~e~L~~~~~~~~i~ip~ 159 (164)
.-+..=+.+|| +..+.-+.+|..+|+++||++++
T Consensus 32 ~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~fee 70 (82)
T PF11020_consen 32 QFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEE 70 (82)
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34455566666 46777899999999999999875
No 486
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=28.16 E-value=3.5e+02 Score=22.40 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhhhchHHHHhhHHHHHH-HHHHHhHHhHHHHHHH
Q psy6769 78 REDIIKMKQRRRTLKNRGYAASCRIKRIE-QKDELETEKSQEYQDM 122 (164)
Q Consensus 78 ~eev~~LKqrRRtLKNRgYAQnCR~KRl~-q~~~LE~e~~~L~~qi 122 (164)
++|+..+|.+-...+...+.-.-..+++. -...++.++..|+.++
T Consensus 33 Keei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 33 KEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 67888888888888878887777777765 2344444444444433
No 487
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.11 E-value=2.5e+02 Score=30.34 Aligned_cols=38 Identities=8% Similarity=-0.063 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy6769 125 MEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIELA 162 (164)
Q Consensus 125 L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~~l~ 162 (164)
...+...+....+...++++.+..-..+.|||.+.+.+
T Consensus 1018 ~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~ 1055 (1486)
T PRK04863 1018 YNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAE 1055 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHH
Confidence 33333344444445555555566777788999887764
No 488
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=28.09 E-value=5.9e+02 Score=25.56 Aligned_cols=71 Identities=18% Similarity=0.117 Sum_probs=33.7
Q ss_pred HHHhCCCCHHHHHHHHHHHhh-hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 70 QLKMRGLSREDIIKMKQRRRT-LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 70 lLk~~gLs~eev~~LKqrRRt-LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+.+..+||+.|...|=+.|=+ |- .==..+=.++..+|+.+...|+.-+..-......+..|+.+.+.+|-.
T Consensus 399 L~~~f~ls~~QaeaIL~mrL~~L~-----~le~~~i~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~~~g~ 470 (735)
T TIGR01062 399 LMERFKLSAIQAEAILNLRLRHLA-----KLEEHAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADATKYGL 470 (735)
T ss_pred HHHhcCCCHHHHHHHHHhHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 444567888777766554411 11 001111122333444444444444444444555556666666666653
No 489
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.03 E-value=2.3e+02 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 104 RIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 104 Rl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+.....+++.+...+...++....+++.+..++.+....++.
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 490
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=28.02 E-value=2.4e+02 Score=20.62 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=29.5
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
.+...+.+...|..+++.|+.+...+...+..|+.=-+-|.++
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v 117 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKV 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666777788888888888888888887776433334444
No 491
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.00 E-value=1.8e+02 Score=25.71 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 104 RIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 104 Rl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
+.+....++.+....+.++...+.++..+...+..++..|+....
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~ 263 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQK 263 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>KOG0018|consensus
Probab=27.98 E-value=3.4e+02 Score=28.90 Aligned_cols=73 Identities=10% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHcCCC
Q psy6769 82 IKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI-----KFAAKHKIH 156 (164)
Q Consensus 82 ~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~-----~~~~~~~i~ 156 (164)
.+++..+.-+++=- -+.|..+ .++...+++......++..+++++.....+++.++.+.+.+. +||...||+
T Consensus 690 ~~~~~~~~~~~~~k-~~l~~~~--~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ 766 (1141)
T KOG0018|consen 690 MRLKYSKLDLEQLK-RSLEQNE--LELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR 766 (1141)
T ss_pred HHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee
Q ss_pred C
Q psy6769 157 I 157 (164)
Q Consensus 157 i 157 (164)
|
T Consensus 767 i 767 (1141)
T KOG0018|consen 767 I 767 (1141)
T ss_pred e
No 493
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=27.97 E-value=4e+02 Score=23.55 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 101 RIKRIE-QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 101 R~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
..|+++ ....+...-..-..-+-.|..|......+++.++.+++.|.++|++
T Consensus 252 k~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 252 KIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=27.97 E-value=88 Score=24.94 Aligned_cols=54 Identities=11% Similarity=-0.040 Sum_probs=0.0
Q ss_pred chHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 93 NRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 93 NRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
..|||.|.=..+=-....=+....++..+.+.+..+.+....+-.+++.+++.+
T Consensus 22 k~GYaRNyLiP~g~A~~aT~~nl~~~e~~~~~~~~~~~~~~~~a~~l~~~l~~~ 75 (148)
T TIGR00158 22 KDGYARNFLIPKGLAVPATKKNIEFFEARRKKLEEKLAANKAAAARLKEVLELG 75 (148)
T ss_pred cccchhhhhcccCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
No 495
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=27.94 E-value=1.3e+02 Score=23.24 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q psy6769 95 GYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNL 131 (164)
Q Consensus 95 gYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~ 131 (164)
+|---||++|..++..++.-+...+.......+|+++
T Consensus 82 ~~we~Cr~~r~~~~~~~~~~~e~~~~k~~~~~~~~~~ 118 (118)
T PF12597_consen 82 GSWEYCRYNRRKERQQMKRAVEAMQEKKRKKEKEKEE 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 496
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=27.94 E-value=3.2e+02 Score=21.96 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 82 IKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 82 ~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
..++++|--+.|=-+.-|. .|=.|.++.|..- ++.|+++-+.+.+.+.+-.+..++.++
T Consensus 104 ~ki~~i~~L~~NmhhllNe-yRPhQARetLi~~---me~Ql~~kr~~i~~i~~~~~~~~~~le 162 (162)
T PF05983_consen 104 RKIEDIRLLFINMHHLLNE-YRPHQARETLIMM---MEEQLEEKREEIEEIRKVCEKAREVLE 162 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
No 497
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.82 E-value=2.1e+02 Score=19.87 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
+.+|...|..|+.|..++..++..-+..-.+--.|.+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAealFk 59 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAAAEALFK 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 498
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=27.64 E-value=3.3e+02 Score=25.94 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCC
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIELATV 164 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~~l~~~ 164 (164)
++++..|.+|+..|..+++..++|++++.-+.+.--.-++.=.+--.+--+|.|.-...|
T Consensus 348 LEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCikaKsq~~~p~~r~~~p~ 407 (442)
T PF06637_consen 348 LEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIKAKSQPMTPGPRPVGPV 407 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCCCCCCCCCC
No 499
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=27.63 E-value=3.3e+02 Score=22.05 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHH----HHhhHHHHH-HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGY----AASCRIKRI-EQKDELETEKSQEYQDMELMEQDCNLMREELHA 138 (164)
Q Consensus 64 VreLN~lLk~~gLs~eev~~LKqrRRtLKNRgY----AQnCR~KRl-~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~ 138 (164)
.++=|..| ..+-.+=|+.|+....+-- .--...|-+ .++..|+.++.+|......+..+..++...-..
T Consensus 55 L~~d~e~L------~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~ 128 (158)
T PF09744_consen 55 LREDNEQL------ETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAE 128 (158)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHH
Q ss_pred HHHHHHHHHH
Q psy6769 139 YSLKCEALIK 148 (164)
Q Consensus 139 ~K~k~e~L~~ 148 (164)
+|.+|..+..
T Consensus 129 l~~e~~~l~e 138 (158)
T PF09744_consen 129 LKKEYNRLHE 138 (158)
T ss_pred HHHHHHHHHH
No 500
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=27.59 E-value=3.7e+02 Score=24.55 Aligned_cols=57 Identities=9% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHH----HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCC
Q psy6769 101 RIKRI----EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA----LIKFAAKHKIHI 157 (164)
Q Consensus 101 R~KRl----~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~----L~~~~~~~~i~i 157 (164)
|.||+ +.+..+|.|...-..+.++|+.+++.+++.....++++.. |-++..-.+.||
T Consensus 55 rvrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~kkpi 119 (389)
T PF06216_consen 55 RVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVKKPI 119 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Done!