Query psy6769
Match_columns 164
No_of_seqs 113 out of 131
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 17:56:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wt7_B Transcription factor MA 100.0 1.4E-38 4.7E-43 234.7 8.7 89 57-147 1-89 (90)
2 3a5t_A Transcription factor MA 100.0 4.8E-40 1.7E-44 248.8 -1.7 104 49-154 3-106 (107)
3 1skn_P DNA-binding domain of S 99.9 6.7E-23 2.3E-27 151.4 6.3 64 50-113 27-90 (92)
4 2kz5_A Transcription factor NF 99.9 3.1E-23 1.1E-27 153.0 1.5 58 51-108 32-89 (91)
5 2lz1_A Nuclear factor erythroi 99.8 1.3E-22 4.6E-27 149.4 -0.6 57 51-107 32-88 (90)
6 2wt7_A Proto-oncogene protein 99.0 2.2E-09 7.5E-14 73.2 9.3 58 85-142 2-59 (63)
7 1jnm_A Proto-oncogene C-JUN; B 98.9 2.3E-09 7.9E-14 72.6 5.8 58 86-143 2-59 (62)
8 1t2k_D Cyclic-AMP-dependent tr 98.8 1.4E-08 4.8E-13 68.5 8.2 59 85-143 1-59 (61)
9 1ci6_A Transcription factor AT 98.6 1.5E-07 5.2E-12 64.3 7.4 59 84-142 1-59 (63)
10 1dh3_A Transcription factor CR 98.5 2.2E-07 7.4E-12 62.2 5.8 50 85-134 1-50 (55)
11 2dgc_A Protein (GCN4); basic d 98.3 1.3E-06 4.5E-11 59.8 5.9 49 86-134 10-58 (63)
12 1gu4_A CAAT/enhancer binding p 97.6 0.00034 1.2E-08 49.9 8.4 56 85-140 15-70 (78)
13 1hjb_A Ccaat/enhancer binding 97.6 0.00034 1.2E-08 50.8 8.5 57 86-142 16-72 (87)
14 1gd2_E Transcription factor PA 97.5 0.00033 1.1E-08 49.0 7.2 60 87-146 10-69 (70)
15 2jee_A YIIU; FTSZ, septum, coi 93.7 0.25 8.7E-06 35.5 7.0 39 111-149 39-77 (81)
16 3lay_A Zinc resistance-associa 88.4 6.6 0.00023 31.1 10.9 74 75-157 67-147 (175)
17 4dzn_A Coiled-coil peptide CC- 87.4 1.5 5.3E-05 26.3 5.1 30 114-143 3-32 (33)
18 2c9l_Y EB1, zebra, BZLF1 trans 87.2 2.4 8.2E-05 28.8 6.6 24 88-111 4-27 (63)
19 1deb_A APC protein, adenomatou 87.1 3.7 0.00013 27.4 7.3 43 105-147 9-51 (54)
20 3okq_A BUD site selection prot 86.9 5.7 0.00019 31.1 9.5 61 92-152 7-79 (141)
21 2wt7_A Proto-oncogene protein 86.3 3.1 0.00011 27.5 6.8 37 115-151 25-61 (63)
22 3mq7_A Bone marrow stromal ant 85.9 5 0.00017 30.7 8.5 76 64-147 23-98 (121)
23 2v71_A Nuclear distribution pr 85.2 2.3 7.7E-05 34.5 6.6 40 109-148 45-84 (189)
24 4e61_A Protein BIM1; EB1-like 84.4 5.1 0.00018 29.9 7.8 45 108-152 13-57 (106)
25 3iv1_A Tumor susceptibility ge 83.8 9.5 0.00033 27.0 9.3 62 87-148 12-74 (78)
26 1gmj_A ATPase inhibitor; coile 82.5 11 0.00039 27.0 8.9 55 94-148 25-79 (84)
27 1uii_A Geminin; human, DNA rep 82.4 6 0.00021 28.5 7.2 59 74-149 23-82 (83)
28 2yy0_A C-MYC-binding protein; 82.1 2.7 9.2E-05 27.5 4.9 30 114-143 20-49 (53)
29 1deb_A APC protein, adenomatou 82.0 3.4 0.00012 27.5 5.3 33 116-148 6-38 (54)
30 3mq7_A Bone marrow stromal ant 81.7 5.7 0.0002 30.4 7.2 41 105-145 70-110 (121)
31 3hnw_A Uncharacterized protein 80.4 6.3 0.00021 30.0 7.2 112 20-147 17-130 (138)
32 2yy0_A C-MYC-binding protein; 80.1 3.7 0.00013 26.8 5.0 29 120-148 19-47 (53)
33 1nkp_B MAX protein, MYC proto- 80.1 2.6 8.8E-05 28.9 4.5 60 86-145 11-79 (83)
34 1nkp_B MAX protein, MYC proto- 79.6 7.1 0.00024 26.6 6.6 34 105-138 46-79 (83)
35 3efg_A Protein SLYX homolog; x 79.5 8.9 0.00031 26.7 7.2 43 107-149 15-57 (78)
36 3oja_B Anopheles plasmodium-re 79.4 20 0.0007 31.1 11.0 43 106-148 537-579 (597)
37 1ci6_A Transcription factor AT 79.3 8.5 0.00029 25.5 6.8 28 107-134 31-58 (63)
38 1ses_A Seryl-tRNA synthetase; 78.5 20 0.00068 31.4 10.7 82 64-145 11-96 (421)
39 1nkp_A C-MYC, MYC proto-oncoge 78.0 5.1 0.00018 28.2 5.6 33 105-137 51-83 (88)
40 2xv5_A Lamin-A/C; structural p 77.2 8.7 0.0003 26.6 6.5 38 111-148 3-40 (74)
41 3nmd_A CGMP dependent protein 77.1 4.6 0.00016 28.3 5.0 35 105-139 32-66 (72)
42 3cve_A Homer protein homolog 1 77.0 15 0.00051 25.6 7.7 42 106-147 7-48 (72)
43 2jee_A YIIU; FTSZ, septum, coi 76.7 13 0.00043 26.6 7.3 9 139-147 53-61 (81)
44 1hjb_A Ccaat/enhancer binding 75.8 7.2 0.00025 27.9 5.9 26 109-134 46-71 (87)
45 1nlw_A MAD protein, MAX dimeri 75.8 5.7 0.0002 27.6 5.3 31 105-135 46-76 (80)
46 3a2a_A Voltage-gated hydrogen 75.8 11 0.00039 25.4 6.5 43 107-156 12-54 (58)
47 3q0x_A Centriole protein; cent 75.5 16 0.00054 30.3 8.7 54 94-147 166-219 (228)
48 4dzn_A Coiled-coil peptide CC- 75.4 7.2 0.00025 23.4 4.8 27 121-147 3-29 (33)
49 1go4_E MAD1 (mitotic arrest de 75.3 6.1 0.00021 29.1 5.5 32 114-145 13-44 (100)
50 1t2k_D Cyclic-AMP-dependent tr 75.3 12 0.00039 24.4 6.4 27 108-134 31-57 (61)
51 3q8t_A Beclin-1; autophagy, AT 75.1 14 0.00047 26.5 7.3 41 105-145 24-64 (96)
52 3cvf_A Homer-3, homer protein 75.0 17 0.0006 25.6 7.7 41 107-147 14-54 (79)
53 1gu4_A CAAT/enhancer binding p 74.9 4.6 0.00016 28.3 4.6 26 108-133 45-70 (78)
54 1jcd_A Major outer membrane li 74.3 15 0.0005 24.1 6.6 35 107-141 5-39 (52)
55 2l5g_B Putative uncharacterize 74.2 8.8 0.0003 24.5 5.3 37 115-151 4-40 (42)
56 2dq0_A Seryl-tRNA synthetase; 73.7 24 0.00083 31.3 10.1 83 64-146 11-102 (455)
57 1gd2_E Transcription factor PA 73.2 3.9 0.00013 28.2 3.8 32 108-139 38-69 (70)
58 2wvr_A Geminin; DNA replicatio 73.1 15 0.00053 30.3 8.0 37 114-150 116-152 (209)
59 3hnw_A Uncharacterized protein 73.1 16 0.00055 27.8 7.6 41 108-148 84-124 (138)
60 3m9b_A Proteasome-associated A 72.5 5.8 0.0002 33.5 5.4 41 108-148 56-96 (251)
61 3ol1_A Vimentin; structural ge 72.1 19 0.00065 26.4 7.7 10 136-145 50-59 (119)
62 2dq0_A Seryl-tRNA synthetase; 72.0 6.5 0.00022 34.9 6.0 50 86-138 13-63 (455)
63 1wle_A Seryl-tRNA synthetase; 70.9 11 0.00038 34.1 7.3 87 59-145 45-148 (501)
64 2zqm_A Prefoldin beta subunit 70.7 18 0.00061 25.3 7.0 44 104-147 68-111 (117)
65 1wle_A Seryl-tRNA synthetase; 70.7 61 0.0021 29.3 13.4 52 87-140 53-104 (501)
66 3u06_A Protein claret segregat 70.4 11 0.00036 33.3 6.9 40 107-146 4-43 (412)
67 4etp_A Kinesin-like protein KA 70.3 10 0.00034 33.2 6.7 39 107-145 4-42 (403)
68 3s9g_A Protein hexim1; cyclin 69.5 32 0.0011 25.6 9.8 28 115-142 67-94 (104)
69 1jnm_A Proto-oncogene C-JUN; B 69.4 6.4 0.00022 25.8 4.1 33 116-148 25-57 (62)
70 4h22_A Leucine-rich repeat fli 69.3 24 0.00083 26.2 7.6 48 107-154 38-85 (103)
71 3swk_A Vimentin; cytoskeleton, 69.1 9.8 0.00034 26.7 5.2 32 114-145 8-39 (86)
72 3gpv_A Transcriptional regulat 69.0 24 0.00083 26.2 7.8 79 51-141 52-130 (148)
73 3qne_A Seryl-tRNA synthetase, 68.5 13 0.00043 33.8 7.1 82 64-145 15-103 (485)
74 3gpv_A Transcriptional regulat 68.5 34 0.0012 25.4 8.7 74 75-149 54-131 (148)
75 3ol1_A Vimentin; structural ge 68.5 14 0.00047 27.2 6.2 34 113-146 20-53 (119)
76 2dq3_A Seryl-tRNA synthetase; 68.3 14 0.00048 32.4 7.2 83 64-146 11-101 (425)
77 3vbb_A Seryl-tRNA synthetase, 68.2 9 0.00031 35.1 6.1 51 87-141 19-69 (522)
78 2p22_C Protein SRN2; endosome, 68.0 44 0.0015 26.6 9.9 18 57-74 33-50 (192)
79 1r8d_A Transcription activator 67.8 8.5 0.00029 27.0 4.7 35 48-85 35-69 (109)
80 1nlw_A MAD protein, MAX dimeri 67.8 8 0.00027 26.8 4.5 31 115-145 49-79 (80)
81 3gp4_A Transcriptional regulat 67.7 35 0.0012 25.3 9.1 84 49-144 36-119 (142)
82 2dq3_A Seryl-tRNA synthetase; 67.3 4.7 0.00016 35.4 4.0 50 86-138 13-62 (425)
83 3lss_A Seryl-tRNA synthetase; 66.9 13 0.00044 33.7 6.8 37 105-141 36-72 (484)
84 3s4r_A Vimentin; alpha-helix, 66.3 29 0.00098 24.6 7.3 78 64-147 11-90 (93)
85 2zxx_A Geminin; coiled-coil, c 66.1 26 0.0009 24.8 6.9 30 114-143 35-64 (79)
86 3tq7_B Microtubule-associated 66.1 8.7 0.0003 27.3 4.5 40 115-154 3-42 (82)
87 2p22_A Suppressor protein STP2 65.5 19 0.00065 28.7 6.9 63 90-154 31-97 (174)
88 3m9b_A Proteasome-associated A 65.4 9.9 0.00034 32.1 5.4 36 106-141 61-96 (251)
89 3swk_A Vimentin; cytoskeleton, 65.1 18 0.00061 25.4 5.9 28 117-144 4-31 (86)
90 2dgc_A Protein (GCN4); basic d 64.8 9.6 0.00033 25.4 4.3 27 116-142 33-59 (63)
91 3qne_A Seryl-tRNA synthetase, 64.7 63 0.0022 29.2 10.9 35 105-139 32-66 (485)
92 1wlq_A Geminin; coiled-coil; 2 64.4 36 0.0012 24.4 7.5 32 114-145 39-70 (83)
93 1lwu_C Fibrinogen gamma chain; 64.0 22 0.00075 30.7 7.4 48 104-151 10-57 (323)
94 4ani_A Protein GRPE; chaperone 64.0 28 0.00096 28.4 7.7 39 107-145 60-98 (213)
95 1fxk_A Prefoldin; archaeal pro 63.2 19 0.00064 24.8 5.8 41 105-145 64-104 (107)
96 4e81_A Chaperone protein DNAK; 62.4 45 0.0015 26.5 8.6 17 135-151 192-208 (219)
97 3m48_A General control protein 62.4 13 0.00044 22.6 4.1 23 110-132 4-26 (33)
98 2xdj_A Uncharacterized protein 61.3 27 0.00093 24.6 6.3 36 111-146 25-60 (83)
99 3hh0_A Transcriptional regulat 60.9 17 0.00057 27.2 5.5 34 49-85 38-71 (146)
100 3w03_C DNA repair protein XRCC 60.6 16 0.00053 29.5 5.5 34 111-144 150-183 (184)
101 4abx_A DNA repair protein RECN 60.2 54 0.0018 24.9 11.2 92 62-157 19-145 (175)
102 1dh3_A Transcription factor CR 60.1 8.3 0.00028 25.1 3.2 27 115-141 24-50 (55)
103 1z56_A Ligase interacting fact 59.8 4 0.00014 34.6 2.0 55 106-160 171-240 (246)
104 1gk4_A Vimentin; intermediate 59.0 41 0.0014 23.1 8.9 36 114-149 27-62 (84)
105 3s4r_A Vimentin; alpha-helix, 59.0 45 0.0015 23.6 11.8 37 106-142 56-92 (93)
106 1l8d_A DNA double-strand break 58.7 31 0.0011 24.0 6.4 40 106-145 64-103 (112)
107 1x8y_A Lamin A/C; structural p 58.6 43 0.0015 23.2 7.3 37 112-148 27-63 (86)
108 3mtu_A Tropomyosin alpha-1 cha 58.2 41 0.0014 23.0 7.5 42 112-153 8-49 (75)
109 3m91_A Proteasome-associated A 57.9 36 0.0012 22.1 6.8 37 110-146 13-49 (51)
110 3m91_A Proteasome-associated A 57.9 36 0.0012 22.1 6.8 39 112-150 8-46 (51)
111 3oja_A Leucine-rich immune mol 57.8 46 0.0016 28.4 8.4 29 115-143 437-465 (487)
112 3vmx_A Voltage-gated hydrogen 57.1 37 0.0013 22.1 6.8 42 107-155 5-46 (48)
113 1a93_A Coiled coil, LZ, MYC pr 56.0 21 0.00071 21.7 4.2 30 117-146 4-33 (34)
114 1kd8_A GABH AIV, GCN4 acid bas 55.8 29 0.001 21.4 4.9 24 110-133 5-28 (36)
115 3mov_A Lamin-B1; LMNB1, B-type 55.8 53 0.0018 23.4 7.9 36 114-149 38-73 (95)
116 1fzc_C Fibrin; blood coagulati 55.7 11 0.00038 32.5 4.1 48 105-152 3-50 (319)
117 3oja_B Anopheles plasmodium-re 55.4 41 0.0014 29.2 7.8 15 80-94 457-471 (597)
118 3u5c_P 40S ribosomal protein S 55.2 5.5 0.00019 31.1 2.0 38 53-90 19-63 (142)
119 3mq9_A Bone marrow stromal ant 55.2 82 0.0028 26.7 9.5 54 94-147 417-470 (471)
120 1g6u_A Domain swapped dimer; d 55.2 17 0.00057 23.3 3.9 27 121-147 21-47 (48)
121 1fxk_C Protein (prefoldin); ar 55.1 41 0.0014 24.2 6.6 43 108-150 3-45 (133)
122 1nkp_A C-MYC, MYC proto-oncoge 55.0 27 0.00093 24.4 5.4 64 84-147 13-86 (88)
123 2xdj_A Uncharacterized protein 55.0 46 0.0016 23.3 6.6 40 102-141 23-62 (83)
124 1kd8_A GABH AIV, GCN4 acid bas 54.4 23 0.00077 21.9 4.2 23 108-130 10-32 (36)
125 1uo4_A General control protein 54.2 23 0.0008 21.6 4.2 24 110-133 5-28 (34)
126 3ra3_A P1C; coiled coil domain 53.5 9.8 0.00034 22.1 2.3 22 125-146 5-26 (28)
127 2oxj_A Hybrid alpha/beta pepti 53.2 23 0.00077 21.6 4.1 23 110-132 5-27 (34)
128 3ra3_B P2F; coiled coil domain 53.2 17 0.00059 21.0 3.4 22 123-144 3-24 (28)
129 3trt_A Vimentin; cytoskeleton, 52.6 47 0.0016 21.9 7.6 53 91-146 23-75 (77)
130 2wt7_B Transcription factor MA 52.6 40 0.0014 24.2 6.1 71 53-138 17-87 (90)
131 1a93_B MAX protein, coiled coi 52.0 20 0.0007 21.8 3.7 24 114-137 8-31 (34)
132 3c3f_A Alpha/beta peptide with 51.9 27 0.00092 21.3 4.2 24 110-133 5-28 (34)
133 2ke4_A CDC42-interacting prote 51.8 64 0.0022 23.2 7.9 26 127-152 62-87 (98)
134 1ses_A Seryl-tRNA synthetase; 51.7 23 0.00078 31.0 5.6 46 86-136 13-58 (421)
135 3rrk_A V-type ATPase 116 kDa s 51.5 43 0.0015 27.6 7.0 43 108-150 94-139 (357)
136 3tnu_B Keratin, type II cytosk 50.9 52 0.0018 24.1 6.6 75 75-149 32-111 (129)
137 1l8d_A DNA double-strand break 50.6 60 0.0021 22.5 6.8 38 109-146 6-43 (112)
138 3c3g_A Alpha/beta peptide with 50.6 29 0.001 21.0 4.2 23 110-132 4-26 (33)
139 2wq1_A General control protein 49.9 30 0.001 20.9 4.2 24 110-133 4-27 (33)
140 3qao_A LMO0526 protein, MERR-l 49.3 44 0.0015 27.1 6.6 32 51-85 39-70 (249)
141 3gp4_A Transcriptional regulat 48.8 78 0.0027 23.3 12.9 74 74-148 39-116 (142)
142 3na7_A HP0958; flagellar bioge 48.6 1E+02 0.0035 24.7 10.0 12 80-91 19-30 (256)
143 1r8i_A TRAC; VIRB5, helical bu 48.2 15 0.00051 29.1 3.5 31 119-149 14-44 (213)
144 2w6a_A ARF GTPase-activating p 48.1 63 0.0022 22.0 6.4 42 92-133 19-61 (63)
145 1gk6_A Vimentin; intermediate 47.3 44 0.0015 21.7 5.2 25 123-147 10-34 (59)
146 2bni_A General control protein 47.2 35 0.0012 20.8 4.2 24 110-133 5-28 (34)
147 1joc_A EEA1, early endosomal a 47.1 79 0.0027 23.1 7.2 40 107-146 12-51 (125)
148 2rbd_A BH2358 protein; putativ 46.9 29 0.001 26.0 4.9 24 136-159 56-79 (171)
149 2dfs_A Myosin-5A; myosin-V, in 46.9 41 0.0014 33.1 7.0 31 115-145 986-1016(1080)
150 2oqq_A Transcription factor HY 46.6 54 0.0018 20.8 6.1 35 108-142 5-39 (42)
151 3nr7_A DNA-binding protein H-N 46.4 75 0.0026 22.4 7.4 58 94-157 18-75 (86)
152 3a7p_A Autophagy protein 16; c 46.3 74 0.0025 25.0 7.2 62 80-147 69-130 (152)
153 3ibp_A Chromosome partition pr 46.0 71 0.0024 27.6 7.6 48 113-160 17-64 (302)
154 3w03_C DNA repair protein XRCC 45.9 36 0.0012 27.4 5.4 32 105-136 151-182 (184)
155 1t6f_A Geminin; coiled-coil, c 45.5 49 0.0017 20.5 4.7 23 114-136 8-30 (37)
156 1hlo_A Protein (transcription 45.4 15 0.00052 24.9 2.8 53 84-140 19-77 (80)
157 4h22_A Leucine-rich repeat fli 45.0 88 0.003 23.1 7.0 44 105-148 29-72 (103)
158 2zxx_A Geminin; coiled-coil, c 44.9 62 0.0021 22.8 5.9 63 74-146 11-74 (79)
159 3tnu_B Keratin, type II cytosk 44.8 88 0.003 22.8 11.3 62 64-128 38-104 (129)
160 2r2v_A GCN4 leucine zipper; co 44.7 40 0.0014 20.5 4.2 24 110-133 5-28 (34)
161 2dmp_A Zinc fingers and homeob 44.7 53 0.0018 22.4 5.5 47 43-89 9-65 (89)
162 2dfs_A Myosin-5A; myosin-V, in 44.6 96 0.0033 30.5 9.2 29 108-136 986-1014(1080)
163 2oqq_A Transcription factor HY 44.3 49 0.0017 21.0 4.8 28 108-135 12-39 (42)
164 3oja_A Leucine-rich immune mol 44.2 39 0.0014 28.8 5.8 39 115-153 423-461 (487)
165 3u1c_A Tropomyosin alpha-1 cha 43.9 77 0.0026 22.5 6.5 36 109-144 40-75 (101)
166 1fxk_C Protein (prefoldin); ar 43.5 88 0.003 22.4 7.2 17 24-40 29-45 (133)
167 2hy6_A General control protein 43.4 44 0.0015 20.4 4.2 23 110-132 5-27 (34)
168 3tnu_A Keratin, type I cytoske 43.4 94 0.0032 22.7 9.7 37 113-149 77-113 (131)
169 1zrj_A E1B-55KDA-associated pr 43.4 16 0.00054 23.6 2.4 24 55-78 6-29 (50)
170 1kd8_B GABH BLL, GCN4 acid bas 42.2 59 0.002 20.0 5.3 23 110-132 5-27 (36)
171 3rrk_A V-type ATPase 116 kDa s 42.2 93 0.0032 25.5 7.6 18 136-153 267-284 (357)
172 1t6f_A Geminin; coiled-coil, c 42.2 57 0.0019 20.1 4.7 27 106-132 7-33 (37)
173 4b4t_K 26S protease regulatory 42.1 55 0.0019 28.8 6.5 36 111-146 54-89 (428)
174 4b9q_A Chaperone protein DNAK; 42.1 1.3E+02 0.0043 27.0 9.0 17 135-151 580-596 (605)
175 3hh0_A Transcriptional regulat 42.0 96 0.0033 22.9 7.0 21 75-96 42-62 (146)
176 1ik9_A DNA repair protein XRCC 41.9 1.1E+02 0.0039 24.5 7.9 29 107-135 140-168 (213)
177 3m48_A General control protein 41.9 50 0.0017 20.0 4.3 25 116-140 3-27 (33)
178 4emc_A Monopolin complex subun 41.8 78 0.0027 25.7 6.8 32 110-141 24-55 (190)
179 2ve7_A Kinetochore protein HEC 41.8 31 0.0011 29.1 4.7 32 105-136 184-215 (315)
180 2lpe_A Kinase suppressor of RA 41.4 24 0.00083 27.7 3.7 33 53-85 106-138 (149)
181 3mud_A DNA repair protein XRCC 41.3 84 0.0029 25.1 6.9 36 95-137 131-166 (175)
182 3o0z_A RHO-associated protein 41.2 96 0.0033 24.6 7.2 40 107-146 63-102 (168)
183 4e61_A Protein BIM1; EB1-like 40.6 67 0.0023 23.8 5.8 23 108-130 20-42 (106)
184 3tnu_A Keratin, type I cytoske 40.2 55 0.0019 24.0 5.4 25 121-145 78-102 (131)
185 3a7o_A Autophagy protein 16; c 40.2 88 0.003 22.0 6.0 42 106-147 32-73 (75)
186 3swf_A CGMP-gated cation chann 39.4 31 0.0011 24.2 3.6 42 111-152 5-50 (74)
187 3vp9_A General transcriptional 39.4 1.1E+02 0.0036 22.2 7.4 38 108-145 38-75 (92)
188 1r8e_A Multidrug-efflux transp 39.1 1.3E+02 0.0046 23.3 8.7 30 53-85 44-73 (278)
189 2fxo_A Myosin heavy chain, car 38.7 1.1E+02 0.0038 22.3 6.8 41 107-147 77-117 (129)
190 3fiu_A NH(3)-dependent NAD(+) 38.6 70 0.0024 25.6 6.2 45 45-89 191-235 (249)
191 1q08_A Zn(II)-responsive regul 38.4 87 0.003 20.9 7.9 21 69-89 10-30 (99)
192 3o0z_A RHO-associated protein 38.3 1.2E+02 0.0042 24.0 7.4 50 101-150 85-134 (168)
193 2w83_C C-JUN-amino-terminal ki 38.2 72 0.0025 22.5 5.4 8 125-132 49-56 (77)
194 2wuj_A Septum site-determining 37.8 32 0.0011 22.3 3.3 23 119-141 33-55 (57)
195 2v66_B Nuclear distribution pr 37.7 1.2E+02 0.0042 22.4 8.6 35 107-141 36-70 (111)
196 1u00_A HSC66, chaperone protei 37.0 1.5E+02 0.0052 23.3 10.3 15 136-150 190-204 (227)
197 2ve7_C Kinetochore protein NUF 36.8 26 0.00088 28.8 3.3 46 100-145 135-180 (250)
198 4fla_A Regulation of nuclear P 36.8 79 0.0027 24.3 5.9 38 120-157 107-144 (152)
199 1r8e_A Multidrug-efflux transp 36.8 37 0.0013 26.6 4.1 32 116-147 82-113 (278)
200 1go4_E MAD1 (mitotic arrest de 36.4 50 0.0017 24.2 4.5 27 121-147 13-39 (100)
201 2vz4_A Tipal, HTH-type transcr 36.1 60 0.002 22.5 4.8 36 48-86 34-69 (108)
202 2kes_A Synphilin-1; synphillin 36.0 87 0.003 20.2 5.8 42 116-157 7-48 (48)
203 1zhc_A Hypothetical protein HP 35.4 60 0.002 22.1 4.5 38 107-145 32-69 (76)
204 2aze_A Transcription factor DP 35.3 85 0.0029 24.7 5.9 37 105-141 4-40 (155)
205 1q06_A Transcriptional regulat 35.2 1.3E+02 0.0043 21.8 8.4 36 51-89 36-71 (135)
206 1ic2_A Tropomyosin alpha chain 34.9 1E+02 0.0036 20.8 6.6 34 110-143 38-71 (81)
207 3a02_A Homeobox protein arista 34.8 56 0.0019 20.2 4.1 27 64-90 26-52 (60)
208 1am9_A Srebp-1A, protein (ster 34.6 67 0.0023 21.9 4.7 41 103-147 37-77 (82)
209 3i00_A HIP-I, huntingtin-inter 33.9 1.3E+02 0.0046 22.3 6.6 15 79-93 22-36 (120)
210 1lrz_A FEMA, factor essential 33.9 1.2E+02 0.004 25.8 7.1 47 108-154 249-308 (426)
211 1fmh_A General control protein 33.7 76 0.0026 18.9 4.1 23 110-132 5-27 (33)
212 1kd8_B GABH BLL, GCN4 acid bas 33.6 84 0.0029 19.3 4.9 27 115-141 3-29 (36)
213 2wg5_A General control protein 33.3 44 0.0015 24.1 3.8 21 126-146 13-33 (109)
214 1i84_S Smooth muscle myosin he 33.3 1.8E+02 0.0061 28.4 9.1 9 30-38 749-757 (1184)
215 3efg_A Protein SLYX homolog; x 33.3 83 0.0028 21.6 5.0 48 101-148 15-63 (78)
216 2zvf_A Alanyl-tRNA synthetase; 33.0 75 0.0026 23.4 5.2 27 118-144 30-56 (171)
217 3viq_B Mating-type switching p 32.9 40 0.0014 24.1 3.4 23 135-157 49-72 (85)
218 3cvf_A Homer-3, homer protein 32.9 37 0.0013 23.9 3.2 42 108-149 22-67 (79)
219 1s1c_X RHO-associated, coiled- 32.9 1.2E+02 0.0042 20.9 6.6 40 107-146 7-47 (71)
220 1m1j_C Fibrinogen gamma chain; 32.8 1.3E+02 0.0044 26.6 7.4 48 103-150 88-135 (409)
221 1uix_A RHO-associated kinase; 32.8 1.2E+02 0.0042 20.9 7.2 40 107-146 5-47 (71)
222 3mud_A DNA repair protein XRCC 32.5 91 0.0031 24.9 5.8 30 112-141 134-163 (175)
223 3bas_A Myosin heavy chain, str 32.2 1.2E+02 0.0043 20.9 5.9 19 77-95 12-30 (89)
224 2ecb_A Zinc fingers and homeob 31.8 1.3E+02 0.0044 20.9 6.2 45 46-90 10-64 (89)
225 4b9q_A Chaperone protein DNAK; 31.6 2E+02 0.007 25.7 8.6 15 74-88 505-519 (605)
226 3swy_A Cyclic nucleotide-gated 31.5 1E+02 0.0035 19.6 6.0 33 111-143 3-35 (46)
227 3r4h_A Coiled coil helix CC-TE 31.3 78 0.0027 18.9 3.9 19 124-142 6-24 (34)
228 2wg5_A General control protein 30.8 58 0.002 23.4 4.1 24 117-140 11-34 (109)
229 2oxj_A Hybrid alpha/beta pepti 30.7 93 0.0032 18.9 4.6 25 116-140 4-28 (34)
230 2zdi_C Prefoldin subunit alpha 30.3 1.6E+02 0.0056 21.6 6.6 16 25-40 41-56 (151)
231 3hls_A Guanylate cyclase solub 30.2 1.2E+02 0.0041 20.1 5.3 30 118-147 22-51 (66)
232 1ik9_A DNA repair protein XRCC 30.1 97 0.0033 24.9 5.7 29 106-134 146-174 (213)
233 3na7_A HP0958; flagellar bioge 30.1 2.1E+02 0.0072 22.8 11.6 13 80-92 68-80 (256)
234 2ve7_A Kinetochore protein HEC 30.1 63 0.0022 27.2 4.7 27 121-147 186-212 (315)
235 3sjb_C Golgi to ER traffic pro 30.1 1E+02 0.0034 22.4 5.2 28 118-145 54-81 (93)
236 3kin_B Kinesin heavy chain; mo 29.8 81 0.0028 22.9 4.8 22 118-139 94-115 (117)
237 4etp_A Kinesin-like protein KA 29.8 1.9E+02 0.0064 25.1 7.8 27 107-133 11-37 (403)
238 2w6a_A ARF GTPase-activating p 29.7 1.3E+02 0.0046 20.4 7.3 39 110-148 17-55 (63)
239 3q4f_C DNA repair protein XRCC 29.5 58 0.002 26.5 4.2 25 105-136 160-184 (186)
240 3oa7_A Head morphogenesis prot 29.5 1.7E+02 0.0058 24.0 7.0 56 90-148 17-72 (206)
241 2akf_A Coronin-1A; coiled coil 29.0 94 0.0032 18.5 4.6 26 110-135 3-28 (32)
242 3lss_A Seryl-tRNA synthetase; 29.0 3.2E+02 0.011 24.6 12.2 32 66-97 21-55 (484)
243 1jcd_A Major outer membrane li 28.5 1.2E+02 0.0042 19.6 6.5 27 117-143 8-34 (52)
244 2v4h_A NF-kappa-B essential mo 28.4 99 0.0034 23.1 5.0 41 106-146 69-109 (110)
245 2kho_A Heat shock protein 70; 28.3 1.1E+02 0.0037 27.5 6.2 88 53-152 506-597 (605)
246 2w6b_A RHO guanine nucleotide 28.2 1.3E+02 0.0046 20.0 7.3 26 106-131 10-35 (56)
247 1dkg_A Nucleotide exchange fac 28.1 2.1E+02 0.007 22.6 7.2 19 127-145 60-78 (197)
248 3l9o_A ATP-dependent RNA helic 27.7 1.5E+02 0.005 29.0 7.4 75 75-149 850-927 (1108)
249 1joc_A EEA1, early endosomal a 27.5 1.5E+02 0.0053 21.5 6.0 16 108-123 20-35 (125)
250 2da5_A Zinc fingers and homeob 27.5 1.3E+02 0.0044 19.6 5.2 45 46-90 6-60 (75)
251 1dip_A Delta-sleep-inducing pe 27.5 76 0.0026 22.5 4.0 29 113-141 15-43 (78)
252 1h1j_S THO1 protein; SAP domai 27.1 44 0.0015 21.5 2.5 21 58-78 4-24 (51)
253 1yzm_A FYVE-finger-containing 27.1 51 0.0018 21.5 2.9 28 101-128 23-50 (51)
254 2zhg_A Redox-sensitive transcr 27.0 1E+02 0.0035 23.0 5.0 66 76-142 49-119 (154)
255 1ig7_A Homeotic protein MSX-1; 26.4 1.1E+02 0.0039 18.5 5.1 28 63-90 26-53 (58)
256 3ghg_B Fibrinogen beta chain; 26.3 3.1E+02 0.011 24.9 8.8 90 60-151 93-194 (461)
257 1txp_A HnRNP C, heterogeneous 26.2 59 0.002 19.0 2.7 18 131-148 3-20 (28)
258 3he4_A Synzip6; heterodimeric 26.1 73 0.0025 20.9 3.5 43 90-132 7-50 (56)
259 4ad8_A DNA repair protein RECN 26.1 3.2E+02 0.011 23.6 11.6 20 53-72 152-171 (517)
260 1uo4_A General control protein 26.1 1.1E+02 0.0039 18.5 4.5 25 116-140 4-28 (34)
261 2kvu_A MKL/myocardin-like prot 26.1 60 0.0021 22.7 3.3 25 54-78 21-45 (75)
262 3v86_A De novo design helix; c 25.9 98 0.0034 17.6 4.0 12 129-140 9-20 (27)
263 3myf_A Sensor protein; HPT, hi 25.7 1.5E+02 0.005 21.1 5.5 60 81-142 49-115 (119)
264 1use_A VAsp, vasodilator-stimu 25.6 1.2E+02 0.0041 19.4 4.3 27 122-154 17-43 (45)
265 3c3g_A Alpha/beta peptide with 25.5 1.2E+02 0.004 18.3 4.6 25 116-140 3-27 (33)
266 3hhm_B NISH2 P85alpha; PI3KCA, 25.3 3.3E+02 0.011 23.5 8.7 34 114-147 220-253 (373)
267 2wvr_A Geminin; DNA replicatio 25.0 2.7E+02 0.0094 22.8 7.5 56 74-139 92-148 (209)
268 3vkg_A Dynein heavy chain, cyt 24.9 1.5E+02 0.0053 32.9 7.5 37 110-146 2018-2054(3245)
269 3n7n_E Monopolin complex subun 24.9 15 0.00053 27.0 0.0 32 110-141 40-71 (95)
270 1kqp_A NAD+ synthase, NH(3)-de 24.8 1.2E+02 0.0043 24.3 5.5 34 53-86 217-250 (271)
271 3c3f_A Alpha/beta peptide with 24.7 1.2E+02 0.0042 18.3 4.6 25 116-140 4-28 (34)
272 1hs7_A Syntaxin VAM3; UP-and-D 24.6 96 0.0033 22.3 4.2 45 110-154 45-91 (97)
273 2fxo_A Myosin heavy chain, car 24.6 2E+02 0.007 20.8 7.3 40 107-146 84-123 (129)
274 2ke4_A CDC42-interacting prote 24.5 1.8E+02 0.0061 20.8 5.7 17 108-124 24-40 (98)
275 3u1c_A Tropomyosin alpha-1 cha 24.4 1.9E+02 0.0065 20.4 7.2 26 117-142 41-66 (101)
276 2efr_A General control protein 24.3 2.5E+02 0.0085 21.7 10.7 41 107-147 106-146 (155)
277 3ghg_C Fibrinogen gamma chain; 24.3 1.3E+02 0.0043 26.9 5.8 92 60-152 36-137 (411)
278 1am9_A Srebp-1A, protein (ster 24.2 1.2E+02 0.0042 20.5 4.6 26 105-130 49-74 (82)
279 3plt_A Sphingolipid long chain 24.2 2.9E+02 0.0098 22.9 7.6 16 80-95 105-120 (234)
280 4gkw_A Spindle assembly abnorm 24.2 2.5E+02 0.0086 22.0 6.8 6 140-145 73-78 (167)
281 4b4t_K 26S protease regulatory 24.1 1.3E+02 0.0045 26.3 5.8 39 110-148 46-84 (428)
282 3mq9_A Bone marrow stromal ant 24.1 1.1E+02 0.0037 26.0 5.1 45 58-103 352-398 (471)
283 3q4g_A NH(3)-dependent NAD(+) 23.9 1.1E+02 0.0039 25.2 5.1 36 53-88 229-264 (279)
284 1uii_A Geminin; human, DNA rep 23.9 1.7E+02 0.0058 20.8 5.3 33 120-152 46-78 (83)
285 4b4t_J 26S protease regulatory 23.9 1.5E+02 0.005 26.1 6.1 40 107-146 26-65 (405)
286 3u06_A Protein claret segregat 23.8 2E+02 0.0069 25.0 7.0 40 107-146 18-57 (412)
287 3vkg_A Dynein heavy chain, cyt 23.8 2.2E+02 0.0075 31.8 8.4 43 105-147 2034-2076(3245)
288 1bw5_A ISL-1HD, insulin gene e 23.8 1.4E+02 0.0046 18.7 4.5 26 65-90 31-56 (66)
289 2jn6_A Protein CGL2762, transp 23.7 14 0.00047 24.8 -0.4 27 61-90 23-49 (97)
290 2ocy_A RAB guanine nucleotide 23.6 2.5E+02 0.0087 21.8 6.8 40 108-147 46-92 (154)
291 2hdd_A Protein (engrailed home 23.6 1.3E+02 0.0046 18.5 4.4 27 64-90 30-56 (61)
292 3jsv_C NF-kappa-B essential mo 23.3 60 0.0021 23.7 2.9 30 118-147 59-88 (94)
293 3iz6_R 40S ribosomal protein S 23.2 17 0.00059 28.7 0.0 19 53-71 28-46 (154)
294 3u59_A Tropomyosin beta chain; 23.2 1.9E+02 0.0067 20.1 6.8 34 112-145 36-69 (101)
295 1wcn_A Transcription elongatio 23.2 57 0.002 21.7 2.6 34 53-89 28-61 (70)
296 2kkm_A Translation machinery-a 23.0 1.4E+02 0.0048 22.5 5.1 35 52-93 43-77 (144)
297 2w83_C C-JUN-amino-terminal ki 22.9 2E+02 0.0069 20.2 7.3 32 111-142 28-59 (77)
298 4dzo_A Mitotic spindle assembl 22.6 1.2E+02 0.0042 22.4 4.6 20 114-133 5-24 (123)
299 2l5g_A GPS2 protein, G protein 22.5 91 0.0031 19.3 3.2 16 120-135 15-30 (38)
300 1zme_C Proline utilization tra 22.5 75 0.0026 19.9 3.0 20 108-127 46-65 (70)
301 1wlq_A Geminin; coiled-coil; 2 22.5 1.6E+02 0.0055 21.0 5.0 51 74-134 15-66 (83)
302 2h1k_A IPF-1, pancreatic and d 22.4 1.5E+02 0.0051 18.4 4.5 39 52-90 8-56 (63)
303 2dmq_A LIM/homeobox protein LH 22.2 1.7E+02 0.0057 19.0 5.1 40 50-89 10-59 (80)
304 4b4t_M 26S protease regulatory 22.2 1.2E+02 0.0041 26.7 5.2 28 117-144 43-70 (434)
305 3a03_A T-cell leukemia homeobo 22.1 1.2E+02 0.0043 18.4 4.0 23 68-90 28-50 (56)
306 3qao_A LMO0526 protein, MERR-l 22.1 2.2E+02 0.0074 22.9 6.4 62 76-145 42-108 (249)
307 1ykh_B RNA polymerase II holoe 22.0 2E+02 0.0069 21.3 5.8 7 64-70 52-58 (132)
308 1jgg_A Segmentation protein EV 21.9 1.5E+02 0.005 18.2 4.5 26 65-90 29-54 (60)
309 2djn_A Homeobox protein DLX-5; 21.9 1.6E+02 0.0055 18.7 4.9 41 50-90 10-60 (70)
310 3pxg_A Negative regulator of g 21.8 2.7E+02 0.0092 23.8 7.3 61 25-89 323-383 (468)
311 1ic2_A Tropomyosin alpha chain 21.6 1.9E+02 0.0065 19.4 7.2 37 111-147 32-68 (81)
312 1u9l_A Transcription elongatio 21.5 66 0.0023 21.6 2.7 36 52-90 25-61 (70)
313 3lbx_B Beta-I spectrin, spectr 21.3 2.5E+02 0.0085 20.6 6.3 65 81-148 85-171 (185)
314 1gmj_A ATPase inhibitor; coile 21.2 2.3E+02 0.0078 20.2 6.9 29 113-141 51-79 (84)
315 2dmu_A Homeobox protein goosec 21.1 1.6E+02 0.0056 18.6 4.5 40 50-89 10-59 (70)
316 2zqm_A Prefoldin beta subunit 20.6 2.1E+02 0.0072 19.6 5.6 32 116-147 73-104 (117)
317 2ly9_A Zinc fingers and homeob 20.5 1.8E+02 0.006 18.6 5.3 44 47-90 6-59 (74)
318 1xng_A NH(3)-dependent NAD(+) 20.4 2E+02 0.0068 22.7 5.8 39 45-83 181-226 (268)
319 1z0k_B FYVE-finger-containing 20.4 55 0.0019 22.6 2.1 27 102-128 42-68 (69)
320 4b4t_M 26S protease regulatory 20.3 87 0.003 27.6 3.9 27 121-147 40-66 (434)
321 2e18_A NH(3)-dependent NAD(+) 20.3 2.5E+02 0.0087 21.8 6.3 39 45-83 178-219 (257)
322 1yke_B RNA polymerase II holoe 20.2 2.2E+02 0.0076 21.7 5.8 26 122-147 101-126 (151)
323 4dk0_A Putative MACA; alpha-ha 20.1 1.1E+02 0.0039 24.6 4.3 26 122-147 117-142 (369)
No 1
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=100.00 E-value=1.4e-38 Score=234.74 Aligned_cols=89 Identities=52% Similarity=0.862 Sum_probs=87.3
Q ss_pred hhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy6769 57 DDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 57 eeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~ 136 (164)
|+||+|||+|||++| +|||++|+.+|||+||||||||||||||+||++++++||.++.+|+++++.|+.|++++.+|+
T Consensus 1 deLv~msVreLN~~L--~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 1 DQLVSMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER 78 (90)
T ss_dssp CHHHHSCHHHHHTTC--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHH--cCCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy6769 137 HAYSLKCEALI 147 (164)
Q Consensus 137 d~~K~k~e~L~ 147 (164)
|+||+||++|+
T Consensus 79 d~~k~k~~~L~ 89 (90)
T 2wt7_B 79 DAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 99999999985
No 2
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=100.00 E-value=4.8e-40 Score=248.80 Aligned_cols=104 Identities=52% Similarity=0.770 Sum_probs=91.1
Q ss_pred CCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q psy6769 49 SPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQD 128 (164)
Q Consensus 49 ~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E 128 (164)
+.+++||||+||+|||+|||++| +|||++|+.+|||+|||||||||||+||+||++++++||+++..|+++++.|+.|
T Consensus 3 ~~~~~~sd~~Lv~m~v~elN~~L--~~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~E 80 (107)
T 3a5t_A 3 HMGTSLTDEELVTMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASE 80 (107)
T ss_dssp CCCCCCCHHHHHHSCHHHHHHTT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTST
T ss_pred CCCCCCCHHHHhcCCHHHHHHHH--hCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 129 CNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 129 ~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
++++.+|+|.||+||++|++||+++|
T Consensus 81 n~~l~~E~~~lk~k~e~L~~~a~s~~ 106 (107)
T 3a5t_A 81 NASMKLELDALRSKYEALQNFARTVA 106 (107)
T ss_dssp TSHHHHTTTSSSSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999876
No 3
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=99.87 E-value=6.7e-23 Score=151.42 Aligned_cols=64 Identities=25% Similarity=0.373 Sum_probs=60.0
Q ss_pred CCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhH
Q psy6769 50 PVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELET 113 (164)
Q Consensus 50 ~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~ 113 (164)
-.+|||+++|++|||+|||++|+++|||.+|+..+|++|||+|||+|||+||+||++.++.|+.
T Consensus 27 l~lPfs~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 27 NELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp TTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred hCCCCCHHHHHHCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 3589999999999999999999999999999999999999999999999999999999988764
No 4
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=99.86 E-value=3.1e-23 Score=153.00 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=55.8
Q ss_pred CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHH
Q psy6769 51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQK 108 (164)
Q Consensus 51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~ 108 (164)
.+|||+|+|++|||+|||++|+++|||.+|+..|+++|||+|||+|||+||+||++.+
T Consensus 32 ~lPfs~~~Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~I 89 (91)
T 2kz5_A 32 KIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLETI 89 (91)
T ss_dssp TCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC
T ss_pred CCCCCHHHHHHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999999999999998754
No 5
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-22 Score=149.44 Aligned_cols=57 Identities=21% Similarity=0.418 Sum_probs=55.3
Q ss_pred CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHH
Q psy6769 51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQ 107 (164)
Q Consensus 51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q 107 (164)
.+|||+|+|++|||.|||++|++++||.+|+..|+++||++|||.|||+||+||++.
T Consensus 32 ~LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKld~ 88 (90)
T 2lz1_A 32 HIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVAAQNCRKRKLEN 88 (90)
T ss_dssp TCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHSCSCCCCCCCSCCCCSC
T ss_pred CCCCCHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhHHHHHHcchhhccc
Confidence 589999999999999999999999999999999999999999999999999999874
No 6
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.01 E-value=2.2e-09 Score=73.17 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=46.4
Q ss_pred HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
|.+||+.+||.+|+.||.||.+...+||.++..|..+-+.|+.+++.+..|...++.-
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999997777777777766666666665555543
No 7
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.90 E-value=2.3e-09 Score=72.64 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=49.7
Q ss_pred HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
-.||+.+||.+|+.||.||.+.+.+||.++..|..+-+.|..+++.+..|...+++.+
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999998888888888888888888877776654
No 8
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=98.84 E-value=1.4e-08 Score=68.46 Aligned_cols=59 Identities=22% Similarity=0.212 Sum_probs=51.7
Q ss_pred HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
|..+|..+||.+|+.||.||.+...+||.++..|..+-..|..+++.+..|...+++.+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999999999999999999998888888888888888888887777653
No 9
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.60 E-value=1.5e-07 Score=64.26 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=46.0
Q ss_pred HHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 84 MKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 84 LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
+|..|++..||.+|+.||.||.+....|+.++..|..+-..|+.+++.+..|+..+|+=
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999998888888888888888888887776653
No 10
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.49 E-value=2.2e-07 Score=62.19 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=38.7
Q ss_pred HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q psy6769 85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMRE 134 (164)
Q Consensus 85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~ 134 (164)
|..||.++||..|+.||.||.....+||.++.+|..+-..|..+++.+..
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999966655555555555554443
No 11
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.29 E-value=1.3e-06 Score=59.78 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=35.3
Q ss_pred HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q psy6769 86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMRE 134 (164)
Q Consensus 86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~ 134 (164)
..|++.+||.+|+.||.||.+...+||.++..|..+-+.|..+++.+..
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667999999999999999999999966655555554444444443
No 12
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=97.61 E-value=0.00034 Score=49.86 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=41.3
Q ss_pred HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
+.+.|+-||..+|+-||-||-....+++..+..|..+=..|+.++..+..|++.++
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999998888888866666666666655555555554444
No 13
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=97.61 E-value=0.00034 Score=50.82 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=40.4
Q ss_pred HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
.++||-||..+|+-||-||-..-.+++.++..|..+=..|+.++..+..|.+.++.-
T Consensus 16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999888888875555555555555555555554444433
No 14
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.52 E-value=0.00033 Score=49.04 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=52.1
Q ss_pred HHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 87 RRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 87 rRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
-||+..||.++..-|.||-..+.+||.++..|....+.|..|+..+...++.+...++.|
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578899999999999999999999999999998888888888888888877777766543
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.69 E-value=0.25 Score=35.45 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=30.4
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
|..++..++...+.|..|+++++.|+..|+.++..|.+-
T Consensus 39 L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 39 LSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555556668899999999999999999998864
No 16
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=88.39 E-value=6.6 Score=31.14 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 75 GLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEY-------QDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 75 gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~-------~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.||+||...++++|......-.+- | +++.....|...|. ..+++|..|+..+..++.... .+.-.
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~L--r----~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R--~k~~~ 138 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSAL--R----QQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR--VKRDV 138 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 699999999999998766554332 2 22333333333332 456666666666666554433 33334
Q ss_pred HHHHHcCCCC
Q psy6769 148 KFAAKHKIHI 157 (164)
Q Consensus 148 ~~~~~~~i~i 157 (164)
++++. |||.
T Consensus 139 em~Ke-Gip~ 147 (175)
T 3lay_A 139 AMAQA-GIPR 147 (175)
T ss_dssp HHHHT-TCC-
T ss_pred HHHHh-CCCC
Confidence 56666 8884
No 17
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=87.41 E-value=1.5 Score=26.31 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
|...|.+++..|++|.+.++-|+.++|+-|
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 445566777777777777777777777654
No 18
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=87.23 E-value=2.4 Score=28.85 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=18.6
Q ss_pred HhhhhchHHHHhhHHHHHHHHHHH
Q psy6769 88 RRTLKNRGYAASCRIKRIEQKDEL 111 (164)
Q Consensus 88 RRtLKNRgYAQnCR~KRl~q~~~L 111 (164)
+.+.|||.++..||.|=-++.++.
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~ 27 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHY 27 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999865544443
No 19
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=87.14 E-value=3.7 Score=27.36 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=28.9
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+.|.+.|..|++.|+++++.=..+++++..|-..+|.-+..|.
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 4566667777777777777777777777777666666655554
No 20
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=86.86 E-value=5.7 Score=31.06 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=52.0
Q ss_pred hchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 92 KNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQD------------CNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 92 KNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E------------~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
-||+|--+|++|=-..-+.|=+.+..|+.-++.|+.. +..+.++++..+..++.|..|..+
T Consensus 7 ~~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ 79 (141)
T 3okq_A 7 SNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDT 79 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999987778888999999999999988864 567889999999999999888654
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=86.29 E-value=3.1 Score=27.53 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
...|..+++.|..++..+..+++.++..+..|..+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777776654
No 22
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.95 E-value=5 Score=30.73 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 64 VreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
-+..+++|. +.||..+-..... -.=|..|-.-=+.=...|+.++.+-+.+++.|+-|+..+.+.+...-.+.
T Consensus 23 CrN~T~lLq-~qLTqAQe~l~~~-------eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 23 ARNVTHLLQ-QELTEAQKGFQDV-------EAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677773 5566655332211 22345554444444444554444444444444444444444444444444
Q ss_pred HHHH
Q psy6769 144 EALI 147 (164)
Q Consensus 144 e~L~ 147 (164)
+.|.
T Consensus 95 erlr 98 (121)
T 3mq7_A 95 ERLR 98 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.17 E-value=2.3 Score=34.55 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=32.7
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.+||.++..+..+...|+..+.++..|++.||.||+....
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888887654
No 24
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=84.40 E-value=5.1 Score=29.90 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=35.1
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
......+...|..++..|+.....+.+|||-|=.|+...--+|..
T Consensus 13 L~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 13 LTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667788888999999999999999999998886666654
No 25
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=83.77 E-value=9.5 Score=27.02 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=50.7
Q ss_pred HHhhhhchHHHHhhHHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 87 RRRTLKNRGYAASCRIKRIE-QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 87 rRRtLKNRgYAQnCR~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.||++|-..|-..|=---+. ...+|..-...|..-+.+|.+|.+.+..+++-|+.|-+-|.+
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888887777655554 346788888889999999999999999999999999888764
No 26
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=82.48 E-value=11 Score=27.01 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=44.6
Q ss_pred hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 94 RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 94 RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
|..|+-=++=|-.+.+.|..=+..+..+++.-..++.++..+++..|.++..|..
T Consensus 25 rEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 25 REQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7778777777777788887777777788888888888888888888888887754
No 27
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=82.43 E-value=6 Score=28.45 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHhh-hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRT-LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRt-LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
-|-|..--..|=.+||. |. ..|+ |+..|..+++.|..|++.++.+.+.++.-.+..+-+
T Consensus 23 e~Pse~YWk~lAE~RR~AL~----------------eaL~-EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 23 ENPSSQYWKEVAEKRRKALY----------------EALK-ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHH----------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666666666654 22 2333 777888888888888888888877777665555433
No 28
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.06 E-value=2.7 Score=27.50 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
++..|+++.+.|+.++..+..+.+.+++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 29
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=81.98 E-value=3.4 Score=27.55 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.+|.+|++.|+.|+..+++|+..--+.+.+|-.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ 38 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLET 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHh
Confidence 578899999999999999999887777766643
No 30
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.74 E-value=5.7 Score=30.38 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=33.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
..++.+|+.|+..|.+++.....|+++++++...++.+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 44688999999999999999999999999988777766543
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.40 E-value=6.3 Score=30.05 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=50.6
Q ss_pred hhhhccccCchhhHHHHHhhhccCCCCCCCC--CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHH
Q psy6769 20 LNFTLLIPCSKKNVELLVNFVLRVPPLSPSP--VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYA 97 (164)
Q Consensus 20 ~~~~~~~~~~~~~~e~l~~~~~~~~pl~p~~--~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYA 97 (164)
-.||+--|+++..+..++.++..----.-.. ...++++.+.-|. .||-. ++...+++.-..|....-+
T Consensus 17 k~Y~i~g~e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLa--ALNia--------dEl~k~~~~~~~L~~~l~~ 86 (138)
T 3hnw_A 17 KVIKLGGYESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMM--YLNIA--------DDYFKAKKMADSLSLDIEN 86 (138)
T ss_dssp EEEEECSCSCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHH--HHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH--HHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777765443311100111 2345555555442 23331 2344444443333321111
Q ss_pred HhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 98 ASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 98 QnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
...++..|-.+...++.+++.+.+++..+.++.+.+..+...|.
T Consensus 87 ------~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 87 ------KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13334444444444445555555555555555555554444443
No 32
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=80.10 E-value=3.7 Score=26.81 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.+++.|+.|++.++.+.+.++.+.+.|.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666553
No 33
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=80.05 E-value=2.6 Score=28.91 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=26.9
Q ss_pred HHHhhhhchHHHH------hhHHHHHHHHHHHhHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 86 QRRRTLKNRGYAA------SCRIKRIEQKDELETEKS---QEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 86 qrRRtLKNRgYAQ------nCR~KRl~q~~~LE~e~~---~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
.+||.-=|-+|.. .|...|++...-|...+. .|+.+.+.|..|++.+.++...+++++.+
T Consensus 11 r~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 11 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433455554 454455555555544432 23333444444444444444444444443
No 34
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=79.59 E-value=7.1 Score=26.62 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=24.9
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHA 138 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~ 138 (164)
++.+..|+.++..|..+++.|+.++..+...+.+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777776654
No 35
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=79.51 E-value=8.9 Score=26.67 Aligned_cols=43 Identities=19% Similarity=0.003 Sum_probs=33.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
.+.+||....-...-++.|...+.+-.+++|.++.++..|..-
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567787777777888888888888888888888888877643
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.40 E-value=20 Score=31.14 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=29.7
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
++...+|.++..+..+++..++...++++|.+..++++..|..
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666777777777777777777777777777776654
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.33 E-value=8.5 Score=25.50 Aligned_cols=28 Identities=11% Similarity=0.286 Sum_probs=14.8
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMRE 134 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~ 134 (164)
+..+|+.++..|..+++.|+.|+..++.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 38
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=78.53 E-value=20 Score=31.40 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHH--hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMRGLS--REDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL--ETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 64 VreLN~lLk~~gLs--~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~L--E~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
...+-..|+.+|.+ -+++..+-+.||.++.+.-+-.-+.+.+.....- ..+...|..+...++.++..+..+...+
T Consensus 11 ~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 11 PEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666655 5778888888888777665544444444322111 0223345555555555555555555555
Q ss_pred HHHHHH
Q psy6769 140 SLKCEA 145 (164)
Q Consensus 140 K~k~e~ 145 (164)
..+++.
T Consensus 91 ~~~~~~ 96 (421)
T 1ses_A 91 EARLEA 96 (421)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 39
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=78.03 E-value=5.1 Score=28.17 Aligned_cols=33 Identities=9% Similarity=0.199 Sum_probs=17.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
++.+..|+.+...+..+++.|+.++..+..++.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544444433
No 40
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=77.20 E-value=8.7 Score=26.60 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=23.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
|+.|....+..+..|..++.+++.++....+.|+.|..
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 40 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666553
No 41
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.11 E-value=4.6 Score=28.34 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=15.8
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
.+++...+.....|..+++....++..++.++|.|
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444443
No 42
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=77.05 E-value=15 Score=25.57 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=29.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+....+|.++..|..++..|...++..+.+.+..+..+..+.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777777777766655544
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.74 E-value=13 Score=26.57 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q psy6769 139 YSLKCEALI 147 (164)
Q Consensus 139 ~K~k~e~L~ 147 (164)
+.+..+.|+
T Consensus 53 L~~en~qLk 61 (81)
T 2jee_A 53 LERENNHLK 61 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 44
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=75.83 E-value=7.2 Score=27.88 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=13.6
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMRE 134 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~ 134 (164)
..||.|+..|..+++.|..|+..+..
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555443
No 45
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=75.82 E-value=5.7 Score=27.56 Aligned_cols=31 Identities=6% Similarity=0.243 Sum_probs=16.5
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
.+.|..|+.+...+..+++.|+.++..+.+.
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555555555555555444443
No 46
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=75.78 E-value=11 Score=25.37 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=29.9
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIH 156 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ 156 (164)
+.+.|..-+.+|..++..|....+...+| .+.|.++.++.|+-
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQE-------ieRL~~LLkqHgl~ 54 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQE-------IERLNKLLRQHGLL 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCCc
Confidence 45566666777888888888777777777 57777788888763
No 47
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=75.48 E-value=16 Score=30.30 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=43.9
Q ss_pred hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 94 RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 94 RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
|-|.+.|=++=-.....|+....+.+.|...+...++++++....++..|+++.
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456666655545577788999999999999999999999999999988888754
No 48
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=75.38 E-value=7.2 Score=23.37 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 121 DMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 121 qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++..|++|.+.+++|+.++|-...+|.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888887777664
No 49
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=75.27 E-value=6.1 Score=29.13 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+...|+.+++.|..|+.++.++++.+..+++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777888888888888888888777766
No 50
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=75.26 E-value=12 Score=24.39 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=14.8
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMRE 134 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~ 134 (164)
...|+.++..|..+++.|+.|+..+..
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555543
No 51
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=75.15 E-value=14 Score=26.47 Aligned_cols=41 Identities=12% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+++...||.+...+..++..+..|..++..+-..|-..|..
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~ 64 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSE 64 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555566666666666666666655555544444444444
No 52
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.99 E-value=17 Score=25.62 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=28.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
....+|.++..|..++..|...++..+.+++..+..+..+.
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777777766666555544
No 53
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=74.86 E-value=4.6 Score=28.34 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=14.2
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
...|+.|+..|..+++.|..|+..+.
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 54
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=74.30 E-value=15 Score=24.09 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
++.+|..++..|..++++|..+...++-++..-|.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~ 39 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKD 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777766666554443
No 55
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=74.24 E-value=8.8 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
+.+|-+++++.-+|.+.....+..++.|...|...|.
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4568888999999999999999999999999987664
No 56
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=73.69 E-value=24 Score=31.26 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCC-C----HHHHHHHHHHHhhhhchHHHHhhHHHHHHHH-HHH---hHHhHHHHHHHHHHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMRGL-S----REDIIKMKQRRRTLKNRGYAASCRIKRIEQK-DEL---ETEKSQEYQDMELMEQDCNLMRE 134 (164)
Q Consensus 64 VreLN~lLk~~gL-s----~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~-~~L---E~e~~~L~~qie~L~~E~~~l~~ 134 (164)
.+.+-..|+.+|. + -+++..+-+.||.+..+.-+-.-+.+.+... -.+ ..+...|..+...|+.++..+..
T Consensus 11 ~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 90 (455)
T 2dq0_A 11 PELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELEN 90 (455)
T ss_dssp HHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777 4 3777777788887776654444443333322 111 12334555566666666666666
Q ss_pred HHHHHHHHHHHH
Q psy6769 135 ELHAYSLKCEAL 146 (164)
Q Consensus 135 E~d~~K~k~e~L 146 (164)
+...+..+++.+
T Consensus 91 ~~~~~~~~~~~~ 102 (455)
T 2dq0_A 91 EVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655555555443
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.21 E-value=3.9 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=17.0
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
+..|+.+...+..+.+.|+.++..+..|...|
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555555555555555555555444
No 58
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=73.13 E-value=15 Score=30.31 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
|+..|..+++.+..|++.++.|.+.++.-.+.++-+|
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888877777666544443
No 59
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.11 E-value=16 Score=27.75 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=21.9
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
+..++.|...|..++..++.++..+.++...++.++..|.+
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555666666666665553
No 60
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=72.54 E-value=5.8 Score=33.54 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=28.6
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
..+|+.+...|..+.+.|..++..+++|+..+|..+++|..
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566666667677777777777777777777777777753
No 61
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=72.10 E-value=19 Score=26.42 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy6769 136 LHAYSLKCEA 145 (164)
Q Consensus 136 ~d~~K~k~e~ 145 (164)
.+.+|.||+.
T Consensus 50 ~edfk~KyE~ 59 (119)
T 3ol1_A 50 IMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhHH
Confidence 3334444443
No 62
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=71.98 E-value=6.5 Score=34.94 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=31.2
Q ss_pred HHHhhhhchHH-HHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 86 QRRRTLKNRGY-AASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHA 138 (164)
Q Consensus 86 qrRRtLKNRgY-AQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~ 138 (164)
..|..+++||+ .+ .--++++..|..+...++.+++.|+.+.+.+.+++..
T Consensus 13 ~~~~~~~~R~~~~~---~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 13 LVKNDLIKRGELEK---VKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHTCGGG---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776 31 1125666667777777777777777776666666654
No 63
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=70.88 E-value=11 Score=34.10 Aligned_cols=87 Identities=13% Similarity=0.039 Sum_probs=50.5
Q ss_pred hhcccHHHHHHHHHhCCCC-----HHHHHHHHHHHhhhhchHHHHhhHHHHHHH-HHHHh-----------HHhHHHHHH
Q psy6769 59 LVTISVRDLNRQLKMRGLS-----REDIIKMKQRRRTLKNRGYAASCRIKRIEQ-KDELE-----------TEKSQEYQD 121 (164)
Q Consensus 59 LvsmsVreLN~lLk~~gLs-----~eev~~LKqrRRtLKNRgYAQnCR~KRl~q-~~~LE-----------~e~~~L~~q 121 (164)
++-=..+.+-+.|+.+|+. -+++..+-+.||.++.+.-+-.-+.+.+.. +-.+- .+...|..+
T Consensus 45 ~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~ 124 (501)
T 1wle_A 45 SLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRAR 124 (501)
T ss_dssp HHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHH
Confidence 3333566666667778875 488899999999987665554444444332 22221 133455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 122 MELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 122 ie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
...|+.++..+..+...++.+++.
T Consensus 125 ~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 125 GREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 64
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=70.74 E-value=18 Score=25.30 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=35.4
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 104 RIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 104 Rl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+-+.+..|+.....+...++.|..+...+..+++.++.++..+.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888888888887765
No 65
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=70.69 E-value=61 Score=29.26 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=27.4
Q ss_pred HHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 87 RRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 87 rRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.++.+++||+... .--++++..|..+...++.+++.|+.+.+.+.+++..+|
T Consensus 53 v~~~l~~R~~~~~--~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 53 AARALDLRKGELR--SKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHTCSCC--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666665210 001455566666666666666666665555555554433
No 66
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=70.37 E-value=11 Score=33.28 Aligned_cols=40 Identities=18% Similarity=-0.002 Sum_probs=31.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
+.+.|+.|+..++.+++.|.++..++..|+..+++++...
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 43 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS 43 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888777653
No 67
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.33 E-value=10 Score=33.15 Aligned_cols=39 Identities=3% Similarity=-0.034 Sum_probs=24.0
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+++.|+.+...|+++++.|.+++..+..++..+++++..
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666665555
No 68
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.51 E-value=32 Score=25.59 Aligned_cols=28 Identities=4% Similarity=-0.047 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
+..|..++++|+.|+.++.+|...+.+.
T Consensus 67 v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4445556889999999999998877653
No 69
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.40 E-value=6.4 Score=25.79 Aligned_cols=33 Identities=3% Similarity=0.054 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
..|..+++.|..++..+..+++.+...+..|..
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444433
No 70
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=69.29 E-value=24 Score=26.19 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=33.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
..+++|....+++++.....++..++++..+.++.++..|..-.++..
T Consensus 38 ~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 38 MLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777777777777777766555443
No 71
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=69.07 E-value=9.8 Score=26.73 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=15.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
++..+..+..+|..|+..+....+.+|.||+.
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444445556667765
No 72
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=69.04 E-value=24 Score=26.25 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=41.8
Q ss_pred CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q psy6769 51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCN 130 (164)
Q Consensus 51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~ 130 (164)
.-.||+++|..+. -+ ..|+..|+|-++|..+=+..+... .+|.. ...-|+.....+..+++.|+....
T Consensus 52 ~R~Y~~~dl~~l~--~I-~~lr~~G~sL~eIk~~l~~~~~~~-----~~~~~----~~~~l~~~~~~l~~~i~~L~~~~~ 119 (148)
T 3gpv_A 52 DRIFNEEALKYLE--MI-LCLKNTGMPIQKIKQFIDWSMEGD-----STILH----RLKLMKQQEANVLQLIQDTEKNLK 119 (148)
T ss_dssp CEEBCHHHHHHHH--HH-HHHHTTTCCHHHHHHHHHHHHHCG-----GGHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHH--HH-HHHHHcCCCHHHHHHHHHhhhcCC-----CCHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458888887652 23 344678999999888766543321 12221 223344454445555555555444
Q ss_pred HHHHHHHHHHH
Q psy6769 131 LMREELHAYSL 141 (164)
Q Consensus 131 ~l~~E~d~~K~ 141 (164)
.+..-++.|+.
T Consensus 120 ~L~~~i~~~~~ 130 (148)
T 3gpv_A 120 KIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 73
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=68.51 E-value=13 Score=33.80 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCH---HHHHHHHHHHhhhhchHHHHhhHHHHHH-HHHHHh---HHhHHHHHHHHHHHHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMRGLSR---EDIIKMKQRRRTLKNRGYAASCRIKRIE-QKDELE---TEKSQEYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 64 VreLN~lLk~~gLs~---eev~~LKqrRRtLKNRgYAQnCR~KRl~-q~~~LE---~e~~~L~~qie~L~~E~~~l~~E~ 136 (164)
.+.+-..|+.+|.+. +++..+-+.||.++-..=+-.-+...+. ++-.+- .+...|..+...|+.++..+..+.
T Consensus 15 ~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~ 94 (485)
T 3qne_A 15 PEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKE 94 (485)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777653 6777787888877655433333333333 221221 123445555666666666666665
Q ss_pred HHHHHHHHH
Q psy6769 137 HAYSLKCEA 145 (164)
Q Consensus 137 d~~K~k~e~ 145 (164)
..+..+++.
T Consensus 95 ~~~~~~~~~ 103 (485)
T 3qne_A 95 AEADKNLRS 103 (485)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 74
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=68.48 E-value=34 Score=25.44 Aligned_cols=74 Identities=12% Similarity=-0.053 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHH----HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 75 GLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQK----DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 75 gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~----~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
-+|.+++.+|+.++.- |+-|+.-.==+.=++.. ...+.-...|..+++.+.++.+++.+-++.+..+++.+...
T Consensus 54 ~Y~~~dl~~l~~I~~l-r~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 54 IFNEEALKYLEMILCL-KNTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp EBCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ecCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999998765 77776432211111110 12333445677777778888777777777777777665554
No 75
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.47 E-value=14 Score=27.20 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=15.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 113 TEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 113 ~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.+...|+++++.+..+++++.-|+|.++.-.+.+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 76
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=68.29 E-value=14 Score=32.36 Aligned_cols=83 Identities=13% Similarity=0.244 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCC----HHHHHHHHHHHhhhhchHHHHhhHHHHHHHHH-HH---hHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMRGLS----REDIIKMKQRRRTLKNRGYAASCRIKRIEQKD-EL---ETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 64 VreLN~lLk~~gLs----~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~-~L---E~e~~~L~~qie~L~~E~~~l~~E 135 (164)
...+-..|+.+|.+ -+++..+-+.||.++.+.-+-.-+.+.+.... .+ ..+...|..+...++.++..+..+
T Consensus 11 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 90 (425)
T 2dq3_A 11 PDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEE 90 (425)
T ss_dssp HHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667766 36777777777777666544443333333221 11 112334555566666666666666
Q ss_pred HHHHHHHHHHH
Q psy6769 136 LHAYSLKCEAL 146 (164)
Q Consensus 136 ~d~~K~k~e~L 146 (164)
...+..+++.+
T Consensus 91 ~~~~~~~~~~~ 101 (425)
T 2dq3_A 91 LRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555555543
No 77
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=68.18 E-value=9 Score=35.11 Aligned_cols=51 Identities=14% Similarity=0.016 Sum_probs=40.8
Q ss_pred HHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 87 RRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 87 rRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.|..+++||+.- --++++..|..+...++.+++.|+.+.+.+.+++-..|.
T Consensus 19 v~~~~~~R~~~~----~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~ 69 (522)
T 3vbb_A 19 IRETQEKRFKDP----GLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMK 69 (522)
T ss_dssp HHHHHHHTTSCT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666676531 138899999999999999999999999999999977654
No 78
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=68.01 E-value=44 Score=26.63 Aligned_cols=18 Identities=6% Similarity=0.259 Sum_probs=14.3
Q ss_pred hhhhcccHHHHHHHHHhC
Q psy6769 57 DDLVTISVRDLNRQLKMR 74 (164)
Q Consensus 57 eeLvsmsVreLN~lLk~~ 74 (164)
+.|-++|+.||..+|...
T Consensus 33 ~~L~~LS~~eL~~LL~~~ 50 (192)
T 2p22_C 33 EGINLLSSKEIIDLIQTH 50 (192)
T ss_dssp SGGGSCTTHHHHHHHHHC
T ss_pred HHHHhCCHHHHHHHHhCh
Confidence 358889999999998654
No 79
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=67.76 E-value=8.5 Score=27.03 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=22.3
Q ss_pred CCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHH
Q psy6769 48 PSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMK 85 (164)
Q Consensus 48 p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LK 85 (164)
++..-.||++++..+.. +. .|+..|+|-+++..+=
T Consensus 35 ~~g~R~Y~~~dl~~l~~--I~-~l~~~G~~l~~I~~~l 69 (109)
T 1r8d_A 35 DAGYRLYSDADLERLQQ--IL-FFKEIGFRLDEIKEML 69 (109)
T ss_dssp TTCCEEBCHHHHHHHHH--HH-HHHHTTCCHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHH--HH-HHHHCCCCHHHHHHHH
Confidence 33344688888876632 32 3566799988776554
No 80
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=67.76 E-value=8 Score=26.80 Aligned_cols=31 Identities=6% Similarity=-0.026 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
...|+.+...+..|+..+.++...++++++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666666666666654
No 81
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=67.70 E-value=35 Score=25.30 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q psy6769 49 SPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQD 128 (164)
Q Consensus 49 ~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E 128 (164)
...-.+|+++|..+. -+ ..|+..|+|-++|..+=+....+. .+|.. ...-|+.....+..+++.|+.-
T Consensus 36 ~g~R~Y~~~dl~~l~--~I-~~lr~~G~sL~eIk~~l~~~~~~~-----~~~~~----~~~~L~~~~~~l~~~i~~L~~~ 103 (142)
T 3gp4_A 36 SGVRKFGAEDLRWIL--FT-RQMRRAGLSIEALIDYLALFREGE-----HTLEA----RAELLKKQRIELKNRIDVMQEA 103 (142)
T ss_dssp TSCBCBCHHHHHHHH--HH-HHHHHTTCCHHHHHHHHHHHHHCG-----GGHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeeeCHHHHHHHH--HH-HHHHHcCCCHHHHHHHHHHHhccC-----CCHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999887662 22 344678999999988766544332 12321 2334555666666666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6769 129 CNLMREELHAYSLKCE 144 (164)
Q Consensus 129 ~~~l~~E~d~~K~k~e 144 (164)
...+...++.|+....
T Consensus 104 ~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 104 LDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555443
No 82
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=67.32 E-value=4.7 Score=35.37 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=35.6
Q ss_pred HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHA 138 (164)
Q Consensus 86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~ 138 (164)
..+..+++||+.. .--++++..|..+...++.+++.|+.+.+.+.+++..
T Consensus 13 ~~~~~~~~r~~~~---~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 62 (425)
T 2dq3_A 13 YVKERLATRDKEL---VSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGK 62 (425)
T ss_dssp HHHHHHTTTCGGG---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHhCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888742 1126778888888888888888888888777766543
No 83
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=66.88 E-value=13 Score=33.73 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=32.8
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
++++..|..+...++.+++.|+.+.+.+.+++..+|.
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7888899999999999999999999999999877665
No 84
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=66.32 E-value=29 Score=24.61 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhhhhchH--HHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMRGLSREDIIKMKQRRRTLKNRG--YAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 64 VreLN~lLk~~gLs~eev~~LKqrRRtLKNRg--YAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
...||..|..+ =+-|..|-|.=+.|-..- +-+.+.+ ++ ....|.+...|+++++.+..+++++.-|+|.+..
T Consensus 11 mq~LNdRlAsy---IdKVR~LEqqN~~Le~~i~~l~~~~~~-~~--~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 11 LQELNDRFANL---IDKVRFLEQQNKILLAELEQLKGQGKS-RL--GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhccCC-Cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788877433 244555555444443221 1111111 12 2335888999999999999999999999999888
Q ss_pred HHHHHH
Q psy6769 142 KCEALI 147 (164)
Q Consensus 142 k~e~L~ 147 (164)
..+.+.
T Consensus 85 ~~~~~k 90 (93)
T 3s4r_A 85 DIMRLR 90 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 85
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=66.07 E-value=26 Score=24.79 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
|+..|..+++.+..|++.++.|...++.=.
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666544444433
No 86
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=66.06 E-value=8.7 Score=27.31 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
+..|..++..|+.....+.+|||-|=.|+...--+|....
T Consensus 3 i~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e 42 (82)
T 3tq7_B 3 ILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHE 42 (82)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457778999999999999999999999998877777643
No 87
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=65.54 E-value=19 Score=28.68 Aligned_cols=63 Identities=8% Similarity=0.151 Sum_probs=46.8
Q ss_pred hhhchHHHHhhHH----HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 90 TLKNRGYAASCRI----KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 90 tLKNRgYAQnCR~----KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
+.++.-++..--- |+ -.++|..+...|...++.|.++...+..+++.++.+...+..|....+
T Consensus 31 ~~~e~l~~~q~~lq~sl~~--~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~ 97 (174)
T 2p22_A 31 YVADKILTRQTVMQESIAR--FHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSH 97 (174)
T ss_dssp HHHHHTGGGGTTHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5555555544322 21 235678888899999999999999999999999998888888866553
No 88
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=65.39 E-value=9.9 Score=32.10 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=27.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.+...|+..+..|..++..+++|+.+++.|++.+++
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466777777777788888888888888888877653
No 89
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=65.09 E-value=18 Score=25.37 Aligned_cols=28 Identities=7% Similarity=0.030 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
.|++|++.+..+++++.-|+|.++.-.+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~e 31 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIM 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 90
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=64.75 E-value=9.6 Score=25.40 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
..|..+++.|..+++.+..+++.+++.
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555443
No 91
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=64.66 E-value=63 Score=29.25 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=21.9
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
++++..|..+...++.+++.|+.+.+.+.+++..+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666555443
No 92
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=64.40 E-value=36 Score=24.36 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
|+..|..+++.+..|++.++.|...++.--+.
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777776666554444
No 93
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=64.04 E-value=22 Score=30.68 Aligned_cols=48 Identities=6% Similarity=0.018 Sum_probs=37.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 104 RIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 104 Rl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
-++++..||..+.....++..|+..+..+...++.+++++..|..-|.
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777788877777788888888888888888888888888776654
No 94
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=63.97 E-value=28 Score=28.41 Aligned_cols=39 Identities=5% Similarity=0.099 Sum_probs=31.4
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
.+..|+.+...|..+++.++....|+.-|.+.|+.+.++
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888888888888888888776
No 95
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=63.22 E-value=19 Score=24.83 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
-+....|+.....+...++.|..+...+..+++.++.++.+
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777788888888888887777777654
No 96
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=62.40 E-value=45 Score=26.50 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6769 135 ELHAYSLKCEALIKFAA 151 (164)
Q Consensus 135 E~d~~K~k~e~L~~~~~ 151 (164)
+.+.|+++++.|...+.
T Consensus 192 ~~~~i~~~~~~L~~~~~ 208 (219)
T 4e81_A 192 DKAAIEAKMQELAQVSQ 208 (219)
T ss_dssp CHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45677888888776654
No 97
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=62.38 E-value=13 Score=22.59 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=10.5
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l 132 (164)
+||+.+.+|..+-..|..|.+++
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 35555444444444444444443
No 98
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=61.30 E-value=27 Score=24.56 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=16.4
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
|......|+.++..|+-+++....+++.++++-..+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444445544444443333
No 99
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=60.86 E-value=17 Score=27.20 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHH
Q psy6769 49 SPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMK 85 (164)
Q Consensus 49 ~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LK 85 (164)
+..-.+|+++|..+. .+ ..|+..|+|-+++..+-
T Consensus 38 ~g~R~Y~~~dl~~l~--~I-~~lr~~G~sl~~I~~~l 71 (146)
T 3hh0_A 38 GGHRLYTKDDLYVLQ--QI-QSFKHLGFSLGEIQNII 71 (146)
T ss_dssp TSCEEBCHHHHHHHH--HH-HHHHHTTCCHHHHHHHH
T ss_pred CCCEeeCHHHHHHHH--HH-HHHHHcCCCHHHHHHHH
Confidence 334468888887652 23 34456899988886664
No 100
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=60.57 E-value=16 Score=29.50 Aligned_cols=34 Identities=6% Similarity=0.051 Sum_probs=22.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
+=..+..|+.++++|++|+++|++|.+..-.++|
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345556666677777777777777766655554
No 101
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=60.19 E-value=54 Score=24.88 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchH----HHHhh-----------------HHHHHHHHHHHhHHhHHHHH
Q psy6769 62 ISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRG----YAASC-----------------RIKRIEQKDELETEKSQEYQ 120 (164)
Q Consensus 62 msVreLN~lLk~~gLs~eev~~LKqrRRtLKNRg----YAQnC-----------------R~KRl~q~~~LE~e~~~L~~ 120 (164)
--+.|++. .++..+|-..|.+.+++|.|-. .++.+ -.+.++...........+..
T Consensus 19 ~ql~El~~----~~l~~gE~eeLe~e~~rL~nae~l~~~~~~a~~~L~~~e~~~~~~L~~a~~~L~~l~~~d~~l~~~~e 94 (175)
T 4abx_A 19 FQVQEISE----VSPDPGEEEGLNTELSRLSNLHTIAQAAAGGVELLSDGDLNAAGLIGEAVRALNAGAKYDETVMQLQN 94 (175)
T ss_dssp HHHHHHHH----HCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHh----CCCCCChHHHHHHHHHHHHCHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 33455555 4788889999999999998842 11111 11223333322233333444
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCC
Q psy6769 121 DMELMEQDCNLMREE--------------LHAYSLKCEALIKFAAKHKIHI 157 (164)
Q Consensus 121 qie~L~~E~~~l~~E--------------~d~~K~k~e~L~~~~~~~~i~i 157 (164)
.++...-++..+..+ ++.+..++..|.+++++.|.++
T Consensus 95 ~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~ 145 (175)
T 4abx_A 95 ELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTL 145 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 444444444444433 4466678888999999999664
No 102
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=60.11 E-value=8.3 Score=25.07 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
+.+|..++..|..|+..+..+++.+++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443
No 103
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=59.79 E-value=4 Score=34.56 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=37.2
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDC---------------NLMREELHAYSLKCEALIKFAAKHKIHIPIE 160 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~---------------~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~~ 160 (164)
+..+++|.....|+++++.|.+++ +.+..=+++=|.|+-.++++..+.+|.+|++
T Consensus 171 ~k~~~~E~si~~L~~qLeElv~~k~~~dqLi~~RD~~tR~~fv~LLNEKK~KIR~qqrlL~sa~i~l~~~ 240 (246)
T 1z56_A 171 DSYRNIKESDSSNRNRVEQLARERELLDKLLETRDERTRAMMVTLLNEKKKKIRELHEILRQNNIKLSDD 240 (246)
T ss_dssp HHHHHTTTTTTHHHHHHHHTTTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHGGGTTTTTCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 455677888888888888776663 3333445667889999999999999999975
No 104
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=58.97 E-value=41 Score=23.13 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
+..+.+..+..|..++.+++.++...-+.|+.|...
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Llnv 62 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNV 62 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666667776643
No 105
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=58.96 E-value=45 Score=23.59 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=20.7
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
.++.+|-..+..+..+..+|..|+..+..+.+.+|.|
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555555555555555555554
No 106
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=58.69 E-value=31 Score=24.05 Aligned_cols=40 Identities=8% Similarity=0.110 Sum_probs=27.7
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
..+...+.+...+..++..|..+...+.+++..+..++..
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~ 103 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKR 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777777777777777777776663
No 107
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=58.65 E-value=43 Score=23.23 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=23.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 112 E~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
+.+..+++..+..+..++.+++.++...-+.|+.|..
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666666776654
No 108
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=58.22 E-value=41 Score=22.95 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=33.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 112 E~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
......|..+.+.+......+.+|||-|=.|+...--+|...
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~ 49 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQEN 49 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334445777789999999999999999999998888777764
No 109
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=57.94 E-value=36 Score=22.10 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=17.0
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
+|..++..|..+=++|..-+.+...++..++..+++|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444
No 110
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=57.89 E-value=36 Score=22.10 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=24.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 112 E~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
|....+|++++..|...|.++...+..-+.++..|..-.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666665443
No 111
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.81 E-value=46 Score=28.39 Aligned_cols=29 Identities=3% Similarity=-0.084 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
....+.+++++++|++++.++++.+..+.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 33444555556666666666555554433
No 112
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=57.08 E-value=37 Score=22.07 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=24.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKI 155 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i 155 (164)
+++.|..-+.+|...+..|...-....+| .+.|.++.++.|.
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQE-------ieRL~~LLkqHgl 46 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQE-------IERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHH-------HHHHHHHHHHcCC
Confidence 44455555555555566555555555444 6677777777663
No 113
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=56.01 E-value=21 Score=21.70 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.++++-.+|..|.+.+.+....+++|++.|
T Consensus 4 slq~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 4 GVQAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667778888888888888888888765
No 114
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=55.84 E-value=29 Score=21.37 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=11.0
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
+||.++..|-.+...|..|.++++
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444443
No 115
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=55.78 E-value=53 Score=23.42 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
+...++..+..|..++.+++.++...-+.|+.|...
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 73 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDV 73 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666667777777776666666667766643
No 116
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=55.75 E-value=11 Score=32.50 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=35.7
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
++.+..||..+.....++..|+..+..+...++.++.++..|..-|..
T Consensus 3 ~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp -------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577888898888889999999999999999999999998888876654
No 117
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.42 E-value=41 Score=29.19 Aligned_cols=15 Identities=13% Similarity=0.395 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhhhch
Q psy6769 80 DIIKMKQRRRTLKNR 94 (164)
Q Consensus 80 ev~~LKqrRRtLKNR 94 (164)
++..++..-+++|++
T Consensus 457 e~~~~~~~i~~l~~~ 471 (597)
T 3oja_B 457 EVNELRAEVQQLTNE 471 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 118
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=55.25 E-value=5.5 Score=31.12 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=28.7
Q ss_pred CCChhhhhcccHHHHHHHHH-------hCCCCHHHHHHHHHHHhh
Q psy6769 53 DISDDDLVTISVRDLNRQLK-------MRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk-------~~gLs~eev~~LKqrRRt 90 (164)
+.+-|||.+||.+||-+++. .+||+.++...|+..|..
T Consensus 19 G~~ld~Ll~ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrka 63 (142)
T 3u5c_P 19 GVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAA 63 (142)
T ss_dssp SCBHHHHHTTCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHH
T ss_pred cccHHHHHcCCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHH
Confidence 56789999999999987542 257777777777777654
No 119
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.25 E-value=82 Score=26.70 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=40.4
Q ss_pred hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 94 RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 94 RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
|-=|..|-.-=+.-...||.++++-+..++.|..|...+..++.......+.+.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 417 EAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667776666677788888888777788888888888888777777776654
No 120
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=55.23 E-value=17 Score=23.35 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 121 DMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 121 qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++..|..|+..+.+.+.++|.|+++|.
T Consensus 21 elaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666666666677777777777663
No 121
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=55.10 E-value=41 Score=24.21 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=34.3
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
...|.....+++.+++.+..+...+...+..|+.-.+.|..+-
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777778888888888888888888888888888887764
No 122
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=55.04 E-value=27 Score=24.36 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=35.9
Q ss_pred HHHHHhhhhchHHHH------hhH-HHHHHHHHHHhHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 84 MKQRRRTLKNRGYAA------SCR-IKRIEQKDELETE---KSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 84 LKqrRRtLKNRgYAQ------nCR-~KRl~q~~~LE~e---~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+-.+||.-=|-+|.. +|. ..|++...-|... ...|+.+...+..+++.+.++...++.+++.|.
T Consensus 13 ~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 13 LERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455433455554 442 3456555555544 345556666666666666677667766666653
No 123
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=54.95 E-value=46 Score=23.33 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 102 IKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 102 ~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.-=..+++.|..|+..|+-+++.+..+++.+.+.-..+-.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678889999999999999999999888876544433
No 124
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=54.37 E-value=23 Score=21.88 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=13.6
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCN 130 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~ 130 (164)
.++|..++..|..++.+|+..+.
T Consensus 10 VEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 10 VEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc
Confidence 44566666666666666665544
No 125
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=54.16 E-value=23 Score=21.57 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=12.3
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
+||+.+.+|-.+...|..|+++++
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456665555555555555554443
No 126
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.52 E-value=9.8 Score=22.05 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6769 125 MEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 125 L~~E~~~l~~E~d~~K~k~e~L 146 (164)
|.-|+..+.+.+.++|+|+..|
T Consensus 5 lefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHh
Confidence 3344444444444555554443
No 127
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=53.25 E-value=23 Score=21.63 Aligned_cols=23 Identities=13% Similarity=0.162 Sum_probs=11.0
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l 132 (164)
+||..+..|-.+-+.|..|++++
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 45555444444444444444443
No 128
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.24 E-value=17 Score=21.00 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6769 123 ELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 123 e~L~~E~~~l~~E~d~~K~k~e 144 (164)
.+|++.++++++|+.++.-.+.
T Consensus 3 rrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHH
Confidence 3455566666666655544333
No 129
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=52.63 E-value=47 Score=21.94 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=30.3
Q ss_pred hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 91 LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 91 LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
-|||--|-..-..|++ +|......=..++...+.|+..+.+.+..+...++.|
T Consensus 23 ~knr~EaE~~y~~k~e---el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 23 AKNLQEAEEWYKSKFA---DLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4777777766655554 3444444444455555566666666555555555554
No 130
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=52.57 E-value=40 Score=24.25 Aligned_cols=71 Identities=15% Similarity=0.307 Sum_probs=41.4
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l 132 (164)
+||+++++.| ++--+.||.+|.- +- =+.+| +..+.-= -.++.+|..++..|..+.+.+..|...+
T Consensus 17 gls~eev~~l--Kq~RRtlKNRgyA--q~--CR~Kr--~~q~~~L-------E~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 17 GFTKDEVIRL--KQKRRTLKNRGYA--QS--CRYKR--VQQKHHL-------ENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp TCCHHHHHHH--HHHHHHHHHHHHH--HH--HHHHH--HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH--HHHHHhhhhhHHH--HH--HHHHH--HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888764 7777777766532 11 11122 2211111 1355666777777777777777777777
Q ss_pred HHHHHH
Q psy6769 133 REELHA 138 (164)
Q Consensus 133 ~~E~d~ 138 (164)
++..++
T Consensus 82 k~k~~~ 87 (90)
T 2wt7_B 82 KVKSEK 87 (90)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 665544
No 131
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.03 E-value=20 Score=21.80 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
++...+++|+.|+++++.+..++.
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 455566777777777777776654
No 132
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=51.87 E-value=27 Score=21.30 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=12.1
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
+||+.+..|-.+...|..|.++++
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455555555555555554444443
No 133
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=51.80 E-value=64 Score=23.19 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 127 QDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 127 ~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
.++..+...+|.++.....+..|...
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666555555443
No 134
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=51.73 E-value=23 Score=31.03 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=30.8
Q ss_pred HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy6769 86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~ 136 (164)
..|..+++||+.- - ++++..|..+...++.+++.|+.+.+.+.+++
T Consensus 13 ~~~~~~~~r~~~~----~-~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i 58 (421)
T 1ses_A 13 VFHRAIREKGVAL----D-LEALLALDREVQELKKRLQEVQTERNQVAKRV 58 (421)
T ss_dssp HHHHHHHHHTCCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCc----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777642 1 67777777777777777777777766666543
No 135
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=51.51 E-value=43 Score=27.59 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=36.2
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLK---CEALIKFA 150 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k---~e~L~~~~ 150 (164)
..+++.....+..++..+..+++++..+++.++.. ++.|..|.
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~ 139 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALA 139 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 56677778888888999999999999999999999 88887764
No 136
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.88 E-value=52 Score=24.07 Aligned_cols=75 Identities=8% Similarity=0.104 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHhhHHHHHH-HH----HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 75 GLSREDIIKMKQRRRTLKNRGYAASCRIKRIE-QK----DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 75 gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~-q~----~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
+-+++++..++..=.+|.-..-+.-..+.-++ ++ ...+.+..+.+..+..|..++.+++.++...-+.|+.|...
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34788877776443334333333322222222 11 22234566778888899999999999999888999998754
No 137
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.65 E-value=60 Score=22.55 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=22.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.+++.+...+..++..|+.+...+..++..++..+..|
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555566666666666666666666666555544
No 138
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=50.57 E-value=29 Score=21.01 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=11.2
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l 132 (164)
+||+.+.+|-.+-..|..|++++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45555544444444444444444
No 139
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=49.92 E-value=30 Score=20.93 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=12.5
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
+||+.+.+|-.+...|..|.++++
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456665555555555555554443
No 140
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=49.26 E-value=44 Score=27.05 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=20.6
Q ss_pred CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHH
Q psy6769 51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMK 85 (164)
Q Consensus 51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LK 85 (164)
.-.+|+++|..+.. +. .|+..|+|-++|..+=
T Consensus 39 yR~Y~~~dl~~L~~--I~-~lr~~G~sL~eIk~~l 70 (249)
T 3qao_A 39 YRIYSEKDVDKLQQ--IL-FFKELDFPLKKIQQIL 70 (249)
T ss_dssp CEEBCHHHHHHHHH--HH-HHHHTTCCHHHHHHHH
T ss_pred CeeeCHHHHHHHHH--HH-HHHHCCCCHHHHHHHh
Confidence 34578888776522 22 4566799988887654
No 141
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=48.80 E-value=78 Score=23.34 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHH----HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQK----DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~----~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
+-.|.+++.+|+.++.- |+-|+.-.==+.=++.. ...+.-...|..+++.+..+..++.+-++.+..+++...+
T Consensus 39 R~Y~~~dl~~l~~I~~l-r~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 39 RKFGAEDLRWILFTRQM-RRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp BCBCHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999888654 66666422111111111 1223334556677777777777777776666666655543
No 142
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.56 E-value=1e+02 Score=24.65 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhh
Q psy6769 80 DIIKMKQRRRTL 91 (164)
Q Consensus 80 ev~~LKqrRRtL 91 (164)
++.+|+..|+.+
T Consensus 19 ~i~~l~~~~~~l 30 (256)
T 3na7_A 19 EIDSLEPLIREK 30 (256)
T ss_dssp HHHHTHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455555555554
No 143
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=48.22 E-value=15 Score=29.12 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 119 YQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 119 ~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
..++.+++.++..++..++.+|+.|+++++.
T Consensus 14 ~~q~~q~~~Ql~~~k~Ql~q~k~qy~sltG~ 44 (213)
T 1r8i_A 14 GEQLEQMAQQLEQLKSQLETQKNMYESMAKT 44 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3567788888888999999999999999985
No 144
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.07 E-value=63 Score=22.04 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=20.8
Q ss_pred hchHHHHhhHHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 92 KNRGYAASCRIKRIE-QKDELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 92 KNRgYAQnCR~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
||--+|.--+.--+- ...+|..|...++..+..|+.|+..++
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 444445444433322 233455555555666666666655543
No 145
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=47.28 E-value=44 Score=21.72 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 123 ELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 123 e~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
..|..++.+++.++...-+.|+.|.
T Consensus 10 ~~le~el~~~r~e~~~q~~eYq~Ll 34 (59)
T 1gk6_A 10 EELLSKNYHLENEVARLKKLVGDLL 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344433
No 146
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=47.25 E-value=35 Score=20.79 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=11.7
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
+||+.+..|-.+-+.|..|+++++
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHH
Confidence 455555444444444444444443
No 147
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=47.07 E-value=79 Score=23.12 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=19.9
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.....|.|+..|+.++..|+..+.....-+..+....+.|
T Consensus 12 ~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~l 51 (125)
T 1joc_A 12 RCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSL 51 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3344455555555555555555555444444444443333
No 148
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=46.95 E-value=29 Score=26.04 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCC
Q psy6769 136 LHAYSLKCEALIKFAAKHKIHIPI 159 (164)
Q Consensus 136 ~d~~K~k~e~L~~~~~~~~i~ip~ 159 (164)
++.++.+++.|.++..+.|+|+|+
T Consensus 56 ~~~~~~~i~~l~~~~~~~g~p~P~ 79 (171)
T 2rbd_A 56 IQAMQDENHQLEELLRSNGVGLPP 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCC
Confidence 567888899999999999999986
No 149
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=46.92 E-value=41 Score=33.08 Aligned_cols=31 Identities=3% Similarity=0.021 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+..|..+++.++.++.++.+|.++++++++.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 150
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=46.57 E-value=54 Score=20.80 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=20.4
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
..+||....+|......|...++.+..|-..+++.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34566666666666666666666666665544443
No 151
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=46.38 E-value=75 Score=22.42 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=44.1
Q ss_pred hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy6769 94 RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHI 157 (164)
Q Consensus 94 RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~i 157 (164)
|.+|..|- .+.||.-...|..=++.-+.|-.....+...-..|++.+.....+.||++
T Consensus 18 RA~arel~------le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~ 75 (86)
T 3nr7_A 18 RAQAREST------LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDP 75 (86)
T ss_dssp HHHHHTSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 45555553 34555556667777778888888888888888899999999999999985
No 152
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=46.28 E-value=74 Score=24.99 Aligned_cols=62 Identities=6% Similarity=0.050 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 80 DIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 80 ev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+..|+..+..+++|.- .+-..+.+-.+.+..++.++..|+-+.+.+...+..++..++.|.
T Consensus 69 ~I~~L~~El~~l~~ki~------dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIR------RLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554321 111122222233344445555555555555555555555555543
No 153
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=45.98 E-value=71 Score=27.65 Aligned_cols=48 Identities=8% Similarity=0.082 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q psy6769 113 TEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE 160 (164)
Q Consensus 113 ~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~ip~~ 160 (164)
.....++++.++|+.+..++..-.-.|..--++|.++....|..+|+.
T Consensus 17 e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds 64 (302)
T 3ibp_A 17 EERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSS 64 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCH
Confidence 344556667777777777777777778888888999999999999874
No 154
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.93 E-value=36 Score=27.37 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=24.6
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~ 136 (164)
++...+|..++.+|+.+-++|++|-+++....
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777788888888888888888877776654
No 155
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=45.45 E-value=49 Score=20.46 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=10.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~ 136 (164)
|+.+|..+++.-..|.++++.|-
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444443
No 156
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.37 E-value=15 Score=24.87 Aligned_cols=53 Identities=9% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHHHHhhhhchHHHH------hhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 84 MKQRRRTLKNRGYAA------SCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 84 LKqrRRtLKNRgYAQ------nCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.-.+||.-=|-+|.. .|...|++...-|...+ .-|..|+.++..+..+++.++
T Consensus 19 ~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai----~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 19 LERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKAT----EYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444566654 34444455444444432 234455555555555544444
No 157
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.99 E-value=88 Score=23.15 Aligned_cols=44 Identities=11% Similarity=0.000 Sum_probs=26.6
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
+-|++-|-.....+......+++|...-.++.+..|..+..|..
T Consensus 29 ~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~ 72 (103)
T 4h22_A 29 MYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQF 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566666666666666666666666666653
No 158
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=44.92 E-value=62 Score=22.83 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhh-hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRT-LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRt-LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
-|-|..--..|=.+||. |. -=+++...|-.++.+++.++..|+.|+..++.-.+..+.=.+.|
T Consensus 11 e~Pse~YWk~lAE~RR~AL~----------eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl 74 (79)
T 2zxx_A 11 ENPSSQYWKEVAEQRRKALY----------EALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 74 (79)
T ss_dssp CCTTCTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666665 44 23778888888899999999999999887766655555444433
No 159
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.84 E-value=88 Score=22.78 Aligned_cols=62 Identities=26% Similarity=0.314 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHH-----HHHHHHHhHHhHHHHHHHHHHHHH
Q psy6769 64 VRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKR-----IEQKDELETEKSQEYQDMELMEQD 128 (164)
Q Consensus 64 VreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KR-----l~q~~~LE~e~~~L~~qie~L~~E 128 (164)
+.++|+.+. +| ..++.-+|..+..|-+...-.-.|.-. -..+..||.+..+++.++.....|
T Consensus 38 i~elrr~iq--~L-~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 38 ISEMNRMIQ--RL-RAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555441 22 346777777777777765544443321 123445555555555555544444
No 160
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=44.74 E-value=40 Score=20.51 Aligned_cols=24 Identities=0% Similarity=-0.032 Sum_probs=13.2
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
+||+.+..|-.+...|..|+++++
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456665555555555555555544
No 161
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.67 E-value=53 Score=22.43 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCChhhhhcc----------cHHHHHHHHHhCCCCHHHHHHHHHHHh
Q psy6769 43 VPPLSPSPVIDISDDDLVTI----------SVRDLNRQLKMRGLSREDIIKMKQRRR 89 (164)
Q Consensus 43 ~~pl~p~~~i~fSDeeLvsm----------sVreLN~lLk~~gLs~eev~~LKqrRR 89 (164)
+|.+.|...-.||.+||-.| +..+...+.+.-|||..+|..+=|-||
T Consensus 9 ~p~~~p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR 65 (89)
T 2dmp_A 9 YPDFAPQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERR 65 (89)
T ss_dssp CSCCCSSCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCccccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHH
Confidence 34455656667999988766 344444555666999999988866665
No 162
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.59 E-value=96 Score=30.49 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=13.4
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~ 136 (164)
+..|+.+...+..+++++.+|+..+....
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 163
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=44.30 E-value=49 Score=20.99 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=20.3
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
..+||..+.+|...++.|..|+..+++=
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3467777777777788888888777653
No 164
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.24 E-value=39 Score=28.83 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~ 153 (164)
..+++.++++++++...+..+++.++++-+.+.....+.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 334555555666666666666666666666666555443
No 165
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=43.94 E-value=77 Score=22.48 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=18.2
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
..+|.++..|+..+..+..++..+...+...+.+++
T Consensus 40 ~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 40 KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555544444444444
No 166
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=43.52 E-value=88 Score=22.41 Aligned_cols=17 Identities=12% Similarity=-0.083 Sum_probs=10.2
Q ss_pred ccccCchhhHHHHHhhh
Q psy6769 24 LLIPCSKKNVELLVNFV 40 (164)
Q Consensus 24 ~~~~~~~~~~e~l~~~~ 40 (164)
--||+-+.+.+.+-++.
T Consensus 29 ~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 29 ATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34666666666665544
No 167
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=43.42 E-value=44 Score=20.36 Aligned_cols=23 Identities=4% Similarity=-0.033 Sum_probs=10.1
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l 132 (164)
+||+.+.+|-..-..|..|.+++
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 35555444444444444444443
No 168
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.40 E-value=94 Score=22.73 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=25.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 113 TEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF 149 (164)
Q Consensus 113 ~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~ 149 (164)
.+..+.+..+..|..++.+++.++...-+.|+.|...
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777778777644
No 169
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=43.37 E-value=16 Score=23.60 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.5
Q ss_pred ChhhhhcccHHHHHHHHHhCCCCH
Q psy6769 55 SDDDLVTISVRDLNRQLKMRGLSR 78 (164)
Q Consensus 55 SDeeLvsmsVreLN~lLk~~gLs~ 78 (164)
|+..+-.|.|.||-..|+.+||+.
T Consensus 6 s~~~~~klkV~eLK~eLk~RgL~~ 29 (50)
T 1zrj_A 6 SGMDVRRLKVNELREELQRRGLDT 29 (50)
T ss_dssp CCCCGGGSCHHHHHHHHHHTTCCC
T ss_pred CcCCHHHCcHHHHHHHHHHcCCCC
Confidence 455678999999999999999973
No 170
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.23 E-value=59 Score=20.01 Aligned_cols=23 Identities=4% Similarity=0.101 Sum_probs=9.7
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l 132 (164)
+||..+.+|-.+...|..|.+++
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34544444444444444444333
No 171
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=42.19 E-value=93 Score=25.55 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHc
Q psy6769 136 LHAYSLKCEALIKFAAKH 153 (164)
Q Consensus 136 ~d~~K~k~e~L~~~~~~~ 153 (164)
....+.+|+.+..|+.+.
T Consensus 267 l~~~~~~~~~~~~~~~~~ 284 (357)
T 3rrk_A 267 AKDEVARYKAVADMAAGK 284 (357)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcccC
Confidence 334455666666665443
No 172
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=42.17 E-value=57 Score=20.15 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=13.4
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l 132 (164)
++-..|-.+..+-..+|.+|++|+.++
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444444444555555555555544
No 173
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.15 E-value=55 Score=28.76 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=21.1
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
||.+...|..|.+.++.|...+.+|...++.+++.|
T Consensus 54 le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 54 LEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556666666666666665565555544
No 174
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=42.06 E-value=1.3e+02 Score=27.03 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6769 135 ELHAYSLKCEALIKFAA 151 (164)
Q Consensus 135 E~d~~K~k~e~L~~~~~ 151 (164)
+.+.|+++.+.|...+.
T Consensus 580 ~~~~~~~~~~~l~~~~~ 596 (605)
T 4b9q_A 580 DKAAIEAKMQELAQVSQ 596 (605)
T ss_dssp CHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45667777777766544
No 175
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=42.05 E-value=96 Score=22.94 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHhhhhchHH
Q psy6769 75 GLSREDIIKMKQRRRTLKNRGY 96 (164)
Q Consensus 75 gLs~eev~~LKqrRRtLKNRgY 96 (164)
-.|.+++.+|+.++. +++-|+
T Consensus 42 ~Y~~~dl~~l~~I~~-lr~~G~ 62 (146)
T 3hh0_A 42 LYTKDDLYVLQQIQS-FKHLGF 62 (146)
T ss_dssp EBCHHHHHHHHHHHH-HHHTTC
T ss_pred eeCHHHHHHHHHHHH-HHHcCC
Confidence 368888888888854 455554
No 176
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.92 E-value=1.1e+02 Score=24.51 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=13.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
+...|..++..|..+..+|..+++++..+
T Consensus 140 ~~~~L~~e~~~l~~~~~~l~~qlE~~v~~ 168 (213)
T 1ik9_A 140 KNEHLQKENERLLRDWNDVQGRFEKAVSA 168 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455554444444433
No 177
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.90 E-value=50 Score=19.97 Aligned_cols=25 Identities=12% Similarity=0.023 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.+|...++.|..++..+..|...+|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566667777777777777655444
No 178
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.84 E-value=78 Score=25.74 Aligned_cols=32 Identities=6% Similarity=0.168 Sum_probs=13.5
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.|..|+..|..+++....|+..++++++.++.
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444443333
No 179
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=41.75 E-value=31 Score=29.07 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=22.1
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~ 136 (164)
.++++.|+.++..|..+++.|..+.....+..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n 215 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN 215 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45677777777777777777777666666543
No 180
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=41.35 E-value=24 Score=27.67 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMK 85 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LK 85 (164)
-.|-|+|..||-.|++.+|...|-+.||..++-
T Consensus 106 ~~TLe~LLemsd~evr~~L~~~ga~eEEcrRL~ 138 (149)
T 2lpe_A 106 ELTLDALLEMDEAKAKEMLRRWGASTEECSRLQ 138 (149)
T ss_dssp TCSHHHHTTSCHHHHHHHHHTTTCCTHHHHHHH
T ss_pred hccHHHHHhcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 678999999999999999999999999988774
No 181
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=41.25 E-value=84 Score=25.13 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=20.4
Q ss_pred HHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 95 GYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELH 137 (164)
Q Consensus 95 gYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d 137 (164)
+||-.|-.+.-..++.||.+ +...+.+...+.+++|
T Consensus 131 ~~AertV~kLqkeiD~LEDe-------L~~eKek~k~i~~eLD 166 (175)
T 3mud_A 131 CYCLDTTAKNEKSIDDLEEK-------VAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 57766666655555555555 4555555555555544
No 182
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=41.18 E-value=96 Score=24.62 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=19.9
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
++..||.++..|+.+++.=+....+....+..+..++..|
T Consensus 63 ~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L 102 (168)
T 3o0z_A 63 SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSL 102 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655554444444444333333344333
No 183
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=40.60 E-value=67 Score=23.82 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=9.6
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCN 130 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~ 130 (164)
+.+|..+...|...++.|.+|..
T Consensus 20 i~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 184
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.24 E-value=55 Score=24.03 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 121 DMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 121 qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+++.++..+..+..++..+|..++.
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555554443
No 185
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=40.18 E-value=88 Score=21.97 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=24.8
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.++..|+.....-....++|..|+-.+.-|-+.+.+|+..|+
T Consensus 32 ~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 32 QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 344555544444445667777777777777777777776654
No 186
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=39.44 E-value=31 Score=24.21 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=22.1
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHA----YSLKCEALIKFAAK 152 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~----~K~k~e~L~~~~~~ 152 (164)
+|..+..|..-++.|+-..+++.-|-.. +|+++..|-...+.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555555555555555555444443 45666666655444
No 187
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=39.38 E-value=1.1e+02 Score=22.16 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=25.8
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
-.+.|..+.+--++++.++.-+-.+...-..+|++|+.
T Consensus 38 ~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEe 75 (92)
T 3vp9_A 38 QKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEE 75 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666677777777777777777777777765
No 188
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=39.13 E-value=1.3e+02 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=20.3
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMK 85 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LK 85 (164)
.+|++++..+. -+ +.|+..|+|-+++..+=
T Consensus 44 ~y~~~~~~~l~--~i-~~l~~~g~~l~~i~~~~ 73 (278)
T 1r8e_A 44 YYTDSQLIHLD--LI-KSLKYIGTPLEEMKKAQ 73 (278)
T ss_dssp EEETGGGGHHH--HH-HHHHHTTCCHHHHHHHT
T ss_pred ccCHHHHHHHH--HH-HHHHHCCCCHHHHHHHH
Confidence 47888877653 22 34567899988876653
No 189
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=38.73 E-value=1.1e+02 Score=22.34 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=20.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+..||.....+...++.....++.+..+...+...+..|.
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444444444444444443
No 190
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=38.64 E-value=70 Score=25.59 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=36.2
Q ss_pred CCCCCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHh
Q psy6769 45 PLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRR 89 (164)
Q Consensus 45 pl~p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRR 89 (164)
|.|+.-..+-+||+=..+|.+++...|...|++++.+.++.+.-+
T Consensus 191 ~psa~L~~~q~de~~lg~~y~~ld~~l~~~~~~~~~~~~i~~~~~ 235 (249)
T 3fiu_A 191 APSAGLWQGQTDEDEMGVTYQEIDDFLDGKQVSAKALERINFWHN 235 (249)
T ss_dssp CCCCCSSTTCCHHHHHTSCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred CCCCccCCCCCCHHHcCCCHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 555555557799999999999999999888999998888876433
No 191
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=38.36 E-value=87 Score=20.89 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=15.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHh
Q psy6769 69 RQLKMRGLSREDIIKMKQRRR 89 (164)
Q Consensus 69 ~lLk~~gLs~eev~~LKqrRR 89 (164)
..|+..|+|=+||..+=+-+.
T Consensus 10 ~~lr~lGfsL~eIk~~l~~~~ 30 (99)
T 1q08_A 10 RHARQLGFSLESIRELLSIRI 30 (99)
T ss_dssp HHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHh
Confidence 356778999999888766543
No 192
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=38.29 E-value=1.2e+02 Score=24.01 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 101 RIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 101 R~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
|...-+-+.+|+..+..|..+++.++.-..++.-+...+..++-.|-+..
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666666666666555555555554443
No 193
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=38.17 E-value=72 Score=22.55 Aligned_cols=8 Identities=0% Similarity=0.252 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy6769 125 MEQDCNLM 132 (164)
Q Consensus 125 L~~E~~~l 132 (164)
|+.|+..+
T Consensus 49 l~~El~s~ 56 (77)
T 2w83_C 49 LQGELEAV 56 (77)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 194
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=37.85 E-value=32 Score=22.26 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 119 YQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 119 ~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
..+++.|..|+..++.+++.++.
T Consensus 33 ~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 33 RKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555544443
No 195
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=37.70 E-value=1.2e+02 Score=22.41 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=17.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
++..|+.+...|+...+.|+.-+..+-+.-|.+.+
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 34455555555555555555555555544444443
No 196
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=37.00 E-value=1.5e+02 Score=23.26 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy6769 136 LHAYSLKCEALIKFA 150 (164)
Q Consensus 136 ~d~~K~k~e~L~~~~ 150 (164)
.+.|+.+++.|...+
T Consensus 190 ~~~~~~~~~~L~~~~ 204 (227)
T 1u00_A 190 VDAIEQAIKNVDKQT 204 (227)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445666666665544
No 197
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=36.85 E-value=26 Score=28.82 Aligned_cols=46 Identities=11% Similarity=-0.000 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 100 CRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 100 CR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
-|.-|+...+++-.+...+..+++++..|+..+..+++.++++..+
T Consensus 135 FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 135 FREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666667777777777766666666666655443
No 198
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=36.81 E-value=79 Score=24.29 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHI 157 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~i 157 (164)
.-....+..+.+.....++||.|++.+..+.++..-++
T Consensus 107 ~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 107 EYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556677777888889999988888877655433
No 199
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=36.76 E-value=37 Score=26.56 Aligned_cols=32 Identities=6% Similarity=0.025 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
..|..+++.+.++.+++.+-++.++.+.+.+.
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSALEQTISLVKKRMK 113 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666665555544
No 200
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.42 E-value=50 Score=24.19 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 121 DMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 121 qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++..|+.+++.+.+|++.++++.+.|-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444443
No 201
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=36.09 E-value=60 Score=22.54 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=23.5
Q ss_pred CCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy6769 48 PSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQ 86 (164)
Q Consensus 48 p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKq 86 (164)
++..-.||++++..+. .+. .|+..|+|-+++..+-+
T Consensus 34 ~~g~R~Y~~~dl~~l~--~I~-~lr~~G~sl~~I~~~l~ 69 (108)
T 2vz4_A 34 HAGHRRYSDADLDRLQ--QIL-FYRELGFPLDEVAALLD 69 (108)
T ss_dssp SSCCEEBCHHHHHHHH--HHH-HHHHTTCCHHHHHHHHT
T ss_pred CCCCeecCHHHHHHHH--HHH-HHHHCCCCHHHHHHHHh
Confidence 4444468998887652 232 34668999888876653
No 202
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=35.98 E-value=87 Score=20.17 Aligned_cols=42 Identities=2% Similarity=-0.055 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHI 157 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~i 157 (164)
..|..|+-+|-+++.+-.-+|-++...++.|..--+..|.|+
T Consensus 7 mslasqvvkltkql~eqt~~rv~lq~qlq~lle~~k~egrsl 48 (48)
T 2kes_A 7 MSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGKSL 48 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 456777888888888888888888888888888777777664
No 203
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=35.42 E-value=60 Score=22.10 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=23.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+++.+|....--. +++.|+.++-.++-|+..+-.++.+
T Consensus 32 ~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 32 DIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445554433333 7778888888887777666555544
No 204
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=35.34 E-value=85 Score=24.67 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=25.2
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.+.+..||.|+..+...|++-+.++..+.....++|.
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafkn 40 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKN 40 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778777777777777777766666555554
No 205
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=35.24 E-value=1.3e+02 Score=21.82 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=24.2
Q ss_pred CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHh
Q psy6769 51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRR 89 (164)
Q Consensus 51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRR 89 (164)
.-.+|++++..+. .+ ..|+..|+|-+++..+=+...
T Consensus 36 ~R~Y~~~dl~~l~--~I-~~lr~~G~sl~eI~~~l~~~~ 71 (135)
T 1q06_A 36 YRTYTQQHLNELT--LL-RQARQVGFNLEESGELVNLFN 71 (135)
T ss_dssp CEECCHHHHHHHH--HH-HHHHHTTCCHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHH--HH-HHHHHCCCCHHHHHHHHHhhh
Confidence 3458999887653 22 234668999999887765443
No 206
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=34.88 E-value=1e+02 Score=20.76 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=15.3
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
.+|.++..|+..+..|..++.+....+.....++
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333333
No 207
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=34.76 E-value=56 Score=20.23 Aligned_cols=27 Identities=26% Similarity=0.158 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 64 VRDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 64 VreLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
..+-..+.+.-|||..+|.-+=|-||.
T Consensus 26 ~~~r~~La~~l~l~~~qV~~WFqNrR~ 52 (60)
T 3a02_A 26 VFTREELAMKIGLTEARIQVWFQNRRA 52 (60)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHhhhhhh
Confidence 333444445559999999887655553
No 208
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=34.64 E-value=67 Score=21.85 Aligned_cols=41 Identities=5% Similarity=0.122 Sum_probs=21.4
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 103 KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 103 KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.|++...-|...+ .-|..|+.++..+..|.+.++...+...
T Consensus 37 ~k~~Ka~IL~~Ai----~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 37 AKLNKSAVLRKAI----DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455444454443 3345555556666666666665555443
No 209
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=33.94 E-value=1.3e+02 Score=22.26 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhhhc
Q psy6769 79 EDIIKMKQRRRTLKN 93 (164)
Q Consensus 79 eev~~LKqrRRtLKN 93 (164)
-++..||+.=-.+|+
T Consensus 22 reie~lk~ele~l~~ 36 (120)
T 3i00_A 22 REISGLKAQLENMKT 36 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 366666666555543
No 210
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=33.89 E-value=1.2e+02 Score=25.77 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=24.5
Q ss_pred HHHHhHHhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 108 KDELETEKSQEYQDMELM-------------EQDCNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L-------------~~E~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
+.+|+.+...|..+++++ +.++..+.+.++.+..+......+....|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (426)
T 1lrz_A 249 IKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHG 308 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555555555555555 23344445555555555555555544555
No 211
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=33.66 E-value=76 Score=18.86 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=9.9
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l 132 (164)
.||+|+.+-.++--+|.+|.+++
T Consensus 5 qlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 45555444444433444444433
No 212
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.56 E-value=84 Score=19.30 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 115 KSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 115 ~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
..+|...++.|..++..+..|...+|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345666666666666666666544443
No 213
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=33.34 E-value=44 Score=24.05 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6769 126 EQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 126 ~~E~~~l~~E~d~~K~k~e~L 146 (164)
+.++..+.+++..++.+++.|
T Consensus 13 ~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 13 EDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444
No 214
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=33.31 E-value=1.8e+02 Score=28.44 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=4.7
Q ss_pred hhhHHHHHh
Q psy6769 30 KKNVELLVN 38 (164)
Q Consensus 30 ~~~~e~l~~ 38 (164)
..+++.+..
T Consensus 749 k~~~~~lL~ 757 (1184)
T 1i84_S 749 KQACILMIK 757 (1184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555544
No 215
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.27 E-value=83 Score=21.65 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=31.5
Q ss_pred HHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 101 RIKRIE-QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 101 R~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
|.-.|+ .+...|..+.+|...+-+...++.++.+.+..+..|+..+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444 345667777888888888888888888888888888877663
No 216
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=32.98 E-value=75 Score=23.41 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
+...+++|..|+..+.+|++.++.++-
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555443
No 217
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.90 E-value=40 Score=24.14 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH-HHHHHcCCCC
Q psy6769 135 ELHAYSLKCEALI-KFAAKHKIHI 157 (164)
Q Consensus 135 E~d~~K~k~e~L~-~~~~~~~i~i 157 (164)
+-+.+|.-.+.|. ..|...|+++
T Consensus 49 ~YNeiKD~gq~L~g~iA~~rgv~~ 72 (85)
T 3viq_B 49 TYNEIRDIALGMIGKVAEHEKCTS 72 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred HHhHHHHHHHHHHHHHHHHcCCcH
Confidence 3334444444443 4455556554
No 218
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.88 E-value=37 Score=23.88 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDCNLMREELHAY----SLKCEALIKF 149 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~----K~k~e~L~~~ 149 (164)
-.+||..+..|+.+++.=+.+-.+++.|+..+ -.|+..|..|
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~el 67 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSEL 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34566666666666666665555555444333 3345555544
No 219
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=32.86 E-value=1.2e+02 Score=20.92 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=28.1
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMR-EELHAYSLKCEAL 146 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~-~E~d~~K~k~e~L 146 (164)
.+..|..|+.++..++..+..+...+. .|++.+|.+|+.-
T Consensus 7 ~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~ 47 (71)
T 1s1c_X 7 DIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKN 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888887765 3456556666653
No 220
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=32.84 E-value=1.3e+02 Score=26.64 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=37.2
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 103 KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150 (164)
Q Consensus 103 KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~ 150 (164)
+=++++..||..+..-..++..|+..+......++.+++++..|...|
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 446678888887777777888888888888888888888888876544
No 221
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=32.76 E-value=1.2e+02 Score=20.92 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=28.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREE-LH--AYSLKCEAL 146 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E-~d--~~K~k~e~L 146 (164)
.+.+|..|+.++..++..+.++...+..| ++ .+|.+|+..
T Consensus 5 ~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~ 47 (71)
T 1uix_A 5 DVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQ 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888877644 33 456666653
No 222
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=32.49 E-value=91 Score=24.93 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=14.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 112 ETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 112 E~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
|..+..|+.+++.|..++...+.+...+.+
T Consensus 134 ertV~kLqkeiD~LEDeL~~eKek~k~i~~ 163 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVAHAKEENLNMHQ 163 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555444444333333
No 223
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.21 E-value=1.2e+02 Score=20.88 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHhhhhchH
Q psy6769 77 SREDIIKMKQRRRTLKNRG 95 (164)
Q Consensus 77 s~eev~~LKqrRRtLKNRg 95 (164)
+.+++..+...=..+|..-
T Consensus 12 ~eeEm~~~eeel~~lke~l 30 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDL 30 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 224
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.85 E-value=1.3e+02 Score=20.92 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=32.8
Q ss_pred CCCCCCCCCChhhhhcc----------cHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 46 LSPSPVIDISDDDLVTI----------SVRDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 46 l~p~~~i~fSDeeLvsm----------sVreLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
..|...-.||.+||..| +..+-..+...-|||+.+|.-+=|-||.
T Consensus 10 ~~p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~ 64 (89)
T 2ecb_A 10 FTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKK 64 (89)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cCchhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccch
Confidence 45556668999998776 4555556666779999999887776663
No 225
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=31.60 E-value=2e+02 Score=25.66 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRR 88 (164)
Q Consensus 74 ~gLs~eev~~LKqrR 88 (164)
.|||++|+.++.+.-
T Consensus 505 ~~ls~~ei~~~~~~~ 519 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDA 519 (605)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 467777777765443
No 226
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=31.52 E-value=1e+02 Score=19.61 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=18.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
+|..+..|..-++.|+-..+++.-|-..-++|+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666666666555555444443
No 227
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=31.30 E-value=78 Score=18.91 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6769 124 LMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 124 ~L~~E~~~l~~E~d~~K~k 142 (164)
.+++|++.+++|+.++|-.
T Consensus 6 aikqelaaikkelaaikfe 24 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFE 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 228
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.76 E-value=58 Score=23.39 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
+|+.++..++++..+++.|++.++
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555544
No 229
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=30.68 E-value=93 Score=18.89 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.+|...++.|-.+++.+..|...+|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4566666666666666666655444
No 230
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=30.32 E-value=1.6e+02 Score=21.62 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=11.0
Q ss_pred cccCchhhHHHHHhhh
Q psy6769 25 LIPCSKKNVELLVNFV 40 (164)
Q Consensus 25 ~~~~~~~~~e~l~~~~ 40 (164)
-||+.+.+++.|..+.
T Consensus 41 ~~~e~~~~l~~l~~l~ 56 (151)
T 2zdi_C 41 EVQTVRETLENLKKIE 56 (151)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4677788887776544
No 231
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=30.21 E-value=1.2e+02 Score=20.09 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
|..++++...+++...++++.-|+|-+.|.
T Consensus 22 L~~~lE~~~~~Lee~t~~L~~EK~ktd~LL 51 (66)
T 3hls_A 22 LTQELEMLTDRLQLTLRALEDEKKKTDTLL 51 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777788888888888888865
No 232
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=30.13 E-value=97 Score=24.94 Aligned_cols=29 Identities=7% Similarity=0.052 Sum_probs=18.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMRE 134 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~ 134 (164)
.+...|+.+...+..|++++-.++..+..
T Consensus 146 ~e~~~l~~~~~~l~~qlE~~v~~K~~~E~ 174 (213)
T 1ik9_A 146 KENERLLRDWNDVQGRFEKAVSAKEALET 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777666665543
No 233
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.12 E-value=2.1e+02 Score=22.80 Aligned_cols=13 Identities=0% Similarity=0.179 Sum_probs=5.0
Q ss_pred HHHHHHHHHhhhh
Q psy6769 80 DIIKMKQRRRTLK 92 (164)
Q Consensus 80 ev~~LKqrRRtLK 92 (164)
++..++++..+.+
T Consensus 68 ~i~~~~~ri~~~~ 80 (256)
T 3na7_A 68 TLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 234
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=30.12 E-value=63 Score=27.18 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 121 DMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 121 qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
+++.|..+++++..|+..+++..+++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444444444433
No 235
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=30.08 E-value=1e+02 Score=22.41 Aligned_cols=28 Identities=11% Similarity=0.361 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
|++++++|..|++.+..++.+-+..++.
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~~k~~F~~ 81 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQSENKAFQA 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777788888888887777777766
No 236
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=29.83 E-value=81 Score=22.94 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~d~~ 139 (164)
+..+++.|+.++..+..|+..|
T Consensus 94 e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555444
No 237
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.81 E-value=1.9e+02 Score=25.08 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=12.5
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~ 133 (164)
++.+|+.++.++..+++.++.++.++.
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 238
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=29.73 E-value=1.3e+02 Score=20.41 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=25.8
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
++......-.+.+.+|-+=++.+..|+..+..+++.|+.
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 333333344466777777777777777777777777764
No 239
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=29.51 E-value=58 Score=26.46 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=15.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREEL 136 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~ 136 (164)
|+++.+|+.+ .++|++||+++.+|.
T Consensus 160 L~~i~~L~a~-------N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 160 LDTIAENQAK-------NEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 4445555555 566667777777664
No 240
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=29.48 E-value=1.7e+02 Score=24.05 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=42.0
Q ss_pred hhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 90 TLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 90 tLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
.|-|-.-||+=|+--++ +|+.+-..-..+-..|..--+.++.|.|.++.+++.|.+
T Consensus 17 ~~~~~~~~~~~~~~~~~---~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 17 KLLDPELAQSERTEALQ---QLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHCTTCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCHhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 45566778887776665 466677777777777777788888888888888888874
No 241
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.04 E-value=94 Score=18.47 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=17.9
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREE 135 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E 135 (164)
.||.++..|+.-+++|++.+.++..-
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777766665543
No 242
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.96 E-value=3.2e+02 Score=24.57 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCC---HHHHHHHHHHHhhhhchHHH
Q psy6769 66 DLNRQLKMRGLS---REDIIKMKQRRRTLKNRGYA 97 (164)
Q Consensus 66 eLN~lLk~~gLs---~eev~~LKqrRRtLKNRgYA 97 (164)
.+-..++.+|.. -+++..+-+.||.++-+.=+
T Consensus 21 ~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~ 55 (484)
T 3lss_A 21 IIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEA 55 (484)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667754 46777777788877654433
No 243
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.53 E-value=1.2e+02 Score=19.60 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKC 143 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~ 143 (164)
+|..+++.|..++.++..+++.++...
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 244
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.41 E-value=99 Score=23.11 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
+|..-...+-...++..+++..|+.++..++..++.+++.|
T Consensus 69 aQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 69 AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
No 245
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=28.31 E-value=1.1e+02 Score=27.51 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchH--HHHhhHHHHHHHHHHH--hHHhHHHHHHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRG--YAASCRIKRIEQKDEL--ETEKSQEYQDMELMEQD 128 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRg--YAQnCR~KRl~q~~~L--E~e~~~L~~qie~L~~E 128 (164)
++|++++-.| +++...+- +-.+.+..+.-.||.. |..+.|.+ ++..... +.++..+...++.++.-
T Consensus 506 ~ls~~~i~~~-~~~~~~~~--------~~d~~~~~~~~~~n~~e~~~~~~~~~-l~~~~~~~~~~~~~~i~~~~~~~~~~ 575 (605)
T 2kho_A 506 GLNEDEIQKM-VRDAEANA--------EADRKFDELVQTRNQGDHLLHSTRKQ-VEEAGDKLPADDKTAIESALTALETA 575 (605)
T ss_dssp SCCHHHHHHH-HHHHHHSH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 129 CNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 129 ~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
+. ..+.+.|+++++.|...+..
T Consensus 576 l~--~~~~~~~~~~~~~l~~~~~~ 597 (605)
T 2kho_A 576 LK--GEDKAAIEAKMQELAQVSQK 597 (605)
T ss_dssp TT--SSCHHHHHHHHHHHHTTCHH
T ss_pred Hh--cCCHHHHHHHHHHHHHHHHH
No 246
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.19 E-value=1.3e+02 Score=19.98 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=12.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHH
Q psy6769 106 EQKDELETEKSQEYQDMELMEQDCNL 131 (164)
Q Consensus 106 ~q~~~LE~e~~~L~~qie~L~~E~~~ 131 (164)
+....|-+++..|+++..+|++-+++
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444444433
No 247
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=28.05 E-value=2.1e+02 Score=22.63 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6769 127 QDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 127 ~E~~~l~~E~d~~K~k~e~ 145 (164)
....|+.-|.+.|+.+.++
T Consensus 60 d~~lR~~Ae~eN~rkR~~k 78 (197)
T 1dkg_A 60 DGILRVKAEMENLRRRTEL 78 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655
No 248
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=27.67 E-value=1.5e+02 Score=29.00 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHhhHH-HHHHHHHHHhHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy6769 75 GLSREDIIKMKQRRRTLKNRGYAASCRI-KRIEQKDELETEKSQEYQDMELMEQDCNL--MREELHAYSLKCEALIKF 149 (164)
Q Consensus 75 gLs~eev~~LKqrRRtLKNRgYAQnCR~-KRl~q~~~LE~e~~~L~~qie~L~~E~~~--l~~E~d~~K~k~e~L~~~ 149 (164)
++...++..+-++...|.++..+..|.. -..++...+-.+...|..+++.|+.+++. -..-++.|++++.-|.++
T Consensus 850 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l 927 (1108)
T 3l9o_A 850 KIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRL 927 (1108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHc
Confidence 3445556666666777777877777754 23444455555667777778888877764 334556777777777754
No 249
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.51 E-value=1.5e+02 Score=21.51 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=6.8
Q ss_pred HHHHhHHhHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDME 123 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie 123 (164)
++.|..++.+|++.++
T Consensus 20 ~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 20 IEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 250
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.48 E-value=1.3e+02 Score=19.56 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=29.9
Q ss_pred CCCCCCCCCChhhhhcc----------cHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 46 LSPSPVIDISDDDLVTI----------SVRDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 46 l~p~~~i~fSDeeLvsm----------sVreLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
..|.-.-.||.+||..| +..+--.+.+.-|||..+|.-+=|-||.
T Consensus 6 ~~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 60 (75)
T 2da5_A 6 SGPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRK 60 (75)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTT
T ss_pred CCCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHH
Confidence 44555667888888766 3334444555569999999888665554
No 251
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=27.45 E-value=76 Score=22.47 Aligned_cols=29 Identities=7% Similarity=0.003 Sum_probs=20.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 113 TEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 113 ~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.|+..|+.+|..|...++++..|-.-+|.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777655554
No 252
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=27.10 E-value=44 Score=21.47 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.2
Q ss_pred hhhcccHHHHHHHHHhCCCCH
Q psy6769 58 DLVTISVRDLNRQLKMRGLSR 78 (164)
Q Consensus 58 eLvsmsVreLN~lLk~~gLs~ 78 (164)
.+-+|.|.||-..|+.+||+.
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~ 24 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSV 24 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCC
T ss_pred hHHHCcHHHHHHHHHHcCCCC
Confidence 467899999999999999873
No 253
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=27.07 E-value=51 Score=21.51 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q psy6769 101 RIKRIEQKDELETEKSQEYQDMELMEQD 128 (164)
Q Consensus 101 R~KRl~q~~~LE~e~~~L~~qie~L~~E 128 (164)
..+|.+++.-|+.-..+|+.+++.+..+
T Consensus 23 ~~~r~DEV~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 23 AAGRMDEVRTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457888888888888888888777643
No 254
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=27.00 E-value=1e+02 Score=23.02 Aligned_cols=66 Identities=8% Similarity=-0.093 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHH-----HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 76 LSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKD-----ELETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 76 Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~-----~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
++.+++.+|+.+++ +|+-|+.-.==..=++... ..+.-...+..+++.|..+.+++..-++.+...
T Consensus 49 Y~~~dl~~l~~I~~-lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~ 119 (154)
T 2zhg_A 49 YKRDVLRYVAIIKI-AQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGC 119 (154)
T ss_dssp BCTTHHHHHHHHHH-HHHHTCCHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHH-HHHCCCCHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 255
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=26.44 E-value=1.1e+02 Score=18.51 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=19.4
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 63 SVRDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 63 sVreLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
+..+-..+.+.-|||..+|.-+=|-||.
T Consensus 26 ~~~~r~~La~~l~l~~~qV~~WFqNrR~ 53 (58)
T 1ig7_A 26 SIAERAEFSSSLSLTETQVKIWFQNRRA 53 (58)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcCHHHhhhhhhHhhh
Confidence 3444455556679999999888766663
No 256
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.31 E-value=3.1e+02 Score=24.92 Aligned_cols=90 Identities=12% Similarity=0.225 Sum_probs=58.5
Q ss_pred hcccHHHHHHHHHhCCCC------HHHHHHH----HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHH--HHHHHHHHHH
Q psy6769 60 VTISVRDLNRQLKMRGLS------REDIIKM----KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQ--EYQDMELMEQ 127 (164)
Q Consensus 60 vsmsVreLN~lLk~~gLs------~eev~~L----KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~--L~~qie~L~~ 127 (164)
|.-++.+|...|. .++ .+-|..| +.+-++.+|..-|-+=-++-|++++..++|... .-..|..|+.
T Consensus 93 V~~dl~~Le~~l~--~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~ 170 (461)
T 3ghg_B 93 IRNSVDELNNNVE--AVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRS 170 (461)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 4556667777662 221 1122223 334455666666666677888888888875443 4467788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 128 DCNLMREELHAYSLKCEALIKFAA 151 (164)
Q Consensus 128 E~~~l~~E~d~~K~k~e~L~~~~~ 151 (164)
-+..+...+..++.....+...|+
T Consensus 171 ~~~~~~~~i~~l~~~~~~~~~~c~ 194 (461)
T 3ghg_B 171 ILENLRSKIQKLESDVSAQMEYCR 194 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 888888888888888888777764
No 257
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=26.21 E-value=59 Score=19.00 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6769 131 LMREELHAYSLKCEALIK 148 (164)
Q Consensus 131 ~l~~E~d~~K~k~e~L~~ 148 (164)
.+++|+..+|++.+.|.+
T Consensus 3 ~IkkELtQIK~kvDsLLe 20 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLE 20 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666666666666654
No 258
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.14 E-value=73 Score=20.87 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=16.5
Q ss_pred hhhchHHHHhhHHHHHHHH-HHHhHHhHHHHHHHHHHHHHHHHH
Q psy6769 90 TLKNRGYAASCRIKRIEQK-DELETEKSQEYQDMELMEQDCNLM 132 (164)
Q Consensus 90 tLKNRgYAQnCR~KRl~q~-~~LE~e~~~L~~qie~L~~E~~~l 132 (164)
.||||.+-.---.-|++.+ ..||.++..|..++..|.+..+-+
T Consensus 7 qlknrvayklkenaklenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 7 QLKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 4677764322222233322 234555555555555554444443
No 259
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.14 E-value=3.2e+02 Score=23.60 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=12.8
Q ss_pred CCChhhhhcccHHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLK 72 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk 72 (164)
.+.++.+.-++-..-+..|.
T Consensus 152 ~~q~~~~~l~~~~~rr~~LD 171 (517)
T 4ad8_A 152 HWQHSAVSLLSPANQRGLLD 171 (517)
T ss_dssp ESGGGGGTTTSHHHHHHHHH
T ss_pred eCCchHHhcCCHHHHHHHHH
Confidence 44555666667777777775
No 260
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=26.12 E-value=1.1e+02 Score=18.47 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.+|...++.|-.++..+..|...+|
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566667777777777766655544
No 261
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=26.09 E-value=60 Score=22.68 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.7
Q ss_pred CChhhhhcccHHHHHHHHHhCCCCH
Q psy6769 54 ISDDDLVTISVRDLNRQLKMRGLSR 78 (164)
Q Consensus 54 fSDeeLvsmsVreLN~lLk~~gLs~ 78 (164)
.....+-+|.|.||-..|+.+||+-
T Consensus 21 ~l~~~l~klkVaeLK~eLk~RGL~~ 45 (75)
T 2kvu_A 21 ALPANLDDMKVAELKQELKLRSLPV 45 (75)
T ss_dssp SCCTTTTTSCHHHHHHHHHHTTCCC
T ss_pred cchHHHHHCcHHHHHHHHHHcCCCC
Confidence 3344678999999999999999974
No 262
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.93 E-value=98 Score=17.64 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy6769 129 CNLMREELHAYS 140 (164)
Q Consensus 129 ~~~l~~E~d~~K 140 (164)
..+++-|..++|
T Consensus 9 vgelkgevralk 20 (27)
T 3v86_A 9 VGELKGEVRALK 20 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 333333333333
No 263
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=25.69 E-value=1.5e+02 Score=21.09 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhchHHHHhhHHHHHH-HHHHHhHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 81 IIKMKQRRRTLKNRGYAASCRIKRIE-QKDELETEK------SQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 81 v~~LKqrRRtLKNRgYAQnCR~KRl~-q~~~LE~e~------~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
...+.+.=-++| |.|.+|-..++. -...||... ..+...+..|..++..+..+.+.|..+
T Consensus 49 ~~~l~~~aHkLk--Gaa~~~Ga~~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 49 QATMLSTIHKLH--GASCYCGVPTTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHH--HHHTTTTCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555564 999999999986 455677642 234456666666666666666655543
No 264
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=25.63 E-value=1.2e+02 Score=19.42 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 122 MELMEQDCNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 122 ie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
++.+++|++.++.|+ ++++..-....|
T Consensus 17 L~E~RkElqK~K~EI------IeAi~~El~~~~ 43 (45)
T 1use_A 17 LEEVKKELQKVKEEI------IEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHhcC
Confidence 345566666666664 455554444333
No 265
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=25.54 E-value=1.2e+02 Score=18.34 Aligned_cols=25 Identities=4% Similarity=-0.032 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.+|...++.|-.++..+..|...+|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3555566666666666666654444
No 266
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=25.35 E-value=3.3e+02 Score=23.49 Aligned_cols=34 Identities=6% Similarity=0.092 Sum_probs=14.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+.+|..++..-..+.-.+.++++.+|-.+-.|.
T Consensus 220 ~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~ 253 (373)
T 3hhm_B 220 SRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 3334444444444444444444444444444433
No 267
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.00 E-value=2.7e+02 Score=22.85 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHhh-hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRT-LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAY 139 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRt-LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~ 139 (164)
-+-|..--..|=.+||. |. .=|++...|-.++..+..++..|+.|+.+++.=.+..
T Consensus 92 e~Pse~YWk~lAE~RR~AL~----------eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 92 ENPSSQYWKEVAEKRRKALY----------EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp CSCCTTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666777777776 43 2377888888888888888888888887776544333
No 268
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.88 E-value=1.5e+02 Score=32.90 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.+|.+....++++...+.+++.+..+++.++.+|+..
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555554
No 269
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=24.87 E-value=15 Score=26.96 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.+.+|.-.|++|+.+|-.++..+.+|.|.+|.
T Consensus 40 ~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke 71 (95)
T 3n7n_E 40 KVVDETLFLQRQIAQLNKQLQLSFQENEKLLS 71 (95)
T ss_dssp --------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777666553
No 270
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=24.81 E-value=1.2e+02 Score=24.32 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=29.3
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQ 86 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKq 86 (164)
.-+||+-+.||.+++...|...+++.+.+.+++.
T Consensus 217 ~q~De~~lg~~Y~~ld~~l~~~~~~~~~~~~v~~ 250 (271)
T 1kqp_A 217 QQSDETELGISYDEIDDYLEGKEVSAKVSEALEK 250 (271)
T ss_dssp TCBHHHHHSSCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHhCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7799999999999999999888888887766554
No 271
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.70 E-value=1.2e+02 Score=18.34 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYS 140 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K 140 (164)
.+|...++.|-.++..+..|...+|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4566666666666666666654444
No 272
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=24.58 E-value=96 Score=22.34 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=27.6
Q ss_pred HHhHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769 110 ELETEKSQEYQDMELMEQ--DCNLMREELHAYSLKCEALIKFAAKHK 154 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~--E~~~l~~E~d~~K~k~e~L~~~~~~~~ 154 (164)
+|+....+|..+++.|-. .++++..+-.++...|+++.+-+.+..
T Consensus 45 ~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ek~ 91 (97)
T 1hs7_A 45 ELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQRK 91 (97)
T ss_dssp THHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554433 566777777777777777776665543
No 273
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=24.57 E-value=2e+02 Score=20.85 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=23.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
++++++............|..++..+..+++.++..++.+
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555666666666666666666555554
No 274
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.46 E-value=1.8e+02 Score=20.79 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=7.2
Q ss_pred HHHHhHHhHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMEL 124 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~ 124 (164)
+++|+++.....++.+.
T Consensus 24 i~el~~ei~ke~~~reg 40 (98)
T 2ke4_A 24 LEERSRELQKEVDQREA 40 (98)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 275
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.40 E-value=1.9e+02 Score=20.38 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
+.-.++..|.+.+..+..++|.+..+
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 276
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=24.33 E-value=2.5e+02 Score=21.73 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=20.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.++.||.+...-......+..++..+..++..|..++..|-
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 44445554444444444555555555555555555555543
No 277
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=24.29 E-value=1.3e+02 Score=26.91 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=61.0
Q ss_pred hcccHHHHHHHHHhC----CCCHHHHHHHHHH----Hhhhhc--hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q psy6769 60 VTISVRDLNRQLKMR----GLSREDIIKMKQR----RRTLKN--RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDC 129 (164)
Q Consensus 60 vsmsVreLN~lLk~~----gLs~eev~~LKqr----RRtLKN--RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~ 129 (164)
|.-++.+|+..|..- .-+.+-|..||+. -+..+| .+|-|-.+ |=+++++.+|.-+.....+|..|+..+
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Sk-kml~~~~~~~~~~~~~~~~i~~l~~~~ 114 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSR-KMLEEIMKYEASILTHDSSIRYLQEIY 114 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444556666655211 0122334444443 234555 44444443 358889999988888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 130 NLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 130 ~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
+.....+..+++++..|...|.+
T Consensus 115 ~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 115 NSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999887655
No 278
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=24.24 E-value=1.2e+02 Score=20.51 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=14.2
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCN 130 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~ 130 (164)
++.+..|+.++..|..+.+.|+.+..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665555555555554443
No 279
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=24.21 E-value=2.9e+02 Score=22.89 Aligned_cols=16 Identities=6% Similarity=0.256 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhhchH
Q psy6769 80 DIIKMKQRRRTLKNRG 95 (164)
Q Consensus 80 ev~~LKqrRRtLKNRg 95 (164)
.+.-.|++|.++-++.
T Consensus 105 svqp~R~~R~~l~~~I 120 (234)
T 3plt_A 105 SVQPSRDRKEKITDEI 120 (234)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3444444444444443
No 280
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.17 E-value=2.5e+02 Score=22.02 Aligned_cols=6 Identities=17% Similarity=0.030 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy6769 140 SLKCEA 145 (164)
Q Consensus 140 K~k~e~ 145 (164)
.+++++
T Consensus 73 QRn~~K 78 (167)
T 4gkw_A 73 QRNLEK 78 (167)
T ss_dssp HHHHHH
T ss_pred HHhHHH
Confidence 333333
No 281
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.13 E-value=1.3e+02 Score=26.29 Aligned_cols=39 Identities=8% Similarity=0.127 Sum_probs=19.6
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK 148 (164)
Q Consensus 110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~ 148 (164)
+|......|+++++.|..|.+.+..+...++.++..+..
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555443
No 282
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.05 E-value=1.1e+02 Score=25.97 Aligned_cols=45 Identities=2% Similarity=-0.096 Sum_probs=21.1
Q ss_pred hhhcccHHHHHHHHHhCCCCHHHHH-HH-HHHHhhhhchHHHHhhHHH
Q psy6769 58 DLVTISVRDLNRQLKMRGLSREDII-KM-KQRRRTLKNRGYAASCRIK 103 (164)
Q Consensus 58 eLvsmsVreLN~lLk~~gLs~eev~-~L-KqrRRtLKNRgYAQnCR~K 103 (164)
++.+.=...++..+. .+.|.++.. .+ ++..+.++.=.+-.-|+..
T Consensus 352 ~~~~~~~~~~~~vl~-G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~ 398 (471)
T 3mq9_A 352 AFWYAVRTAVINAAS-GRQTVDEALKDAQTRITAARDGLRAVMEARNV 398 (471)
T ss_dssp HHHHHHHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhH
Confidence 333333456666663 335665542 22 3334445544444455543
No 283
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=23.93 E-value=1.1e+02 Score=25.18 Aligned_cols=36 Identities=8% Similarity=0.165 Sum_probs=24.3
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRR 88 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrR 88 (164)
.-|||+=+.+|..++...|...|++++.+.++...-
T Consensus 229 ~q~DE~~lg~~Y~~lD~~L~~~~~~~~~~~~i~~~~ 264 (279)
T 3q4g_A 229 QKADEAALNLTYEQIDDFLEGKAVPAEVSQRLVAIY 264 (279)
T ss_dssp --------CCCHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHcCCCHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 679999999999999999998899998887776543
No 284
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.91 E-value=1.7e+02 Score=20.81 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~ 152 (164)
.+-+.|..++..+..|+..+|...+.|..+|..
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888888877654
No 285
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.87 E-value=1.5e+02 Score=26.09 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=23.5
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
.++++|.+.......+.+|..+...+.++...++..++.|
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l 65 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLL 65 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455665555555566666666666666666555555544
No 286
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.85 E-value=2e+02 Score=25.05 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=20.9
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146 (164)
Q Consensus 107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L 146 (164)
++++|+.+..+++.+++.+.+++.+...+|..+...++.|
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 18 RTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555444554444444444
No 287
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.81 E-value=2.2e+02 Score=31.75 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
-+++.++|.++..|+.+.+....|++++..|.+..+.|++.-.
T Consensus 2034 ~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777777777776633
No 288
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=23.79 E-value=1.4e+02 Score=18.74 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 65 RDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 65 reLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
.+-..+.+.-|||..+|.-+=|-||.
T Consensus 31 ~~r~~La~~l~l~~~qV~~WFqNrR~ 56 (66)
T 1bw5_A 31 LMKEQLVEMTGLSPRVIRVWFQNKRC 56 (66)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHhHHHHH
Confidence 33444444559999999888665554
No 289
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=23.70 E-value=14 Score=24.81 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 61 TISVRDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 61 smsVreLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
.+|+.++-+.+ |+|...+-++..+-+.
T Consensus 23 g~s~~~ia~~~---gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 23 GASLQQIANDL---GINRVTLKNWIIKYGS 49 (97)
T ss_dssp GSCHHHHHHHH---TSCHHHHHHHHHHHCC
T ss_pred CChHHHHHHHH---CcCHHHHHHHHHHHhh
Confidence 46777777764 9999998888755443
No 290
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.63 E-value=2.5e+02 Score=21.77 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=18.2
Q ss_pred HHHHhHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQDC-------NLMREELHAYSLKCEALI 147 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~E~-------~~l~~E~d~~K~k~e~L~ 147 (164)
...|+.++.....++.+|..++ .....+.+.+.+.++.|+
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555543333 222344445555555554
No 291
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=23.63 E-value=1.3e+02 Score=18.48 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 64 VRDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 64 VreLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
..+-..+.+.-|||..+|.-+=|-||.
T Consensus 30 ~~~r~~La~~l~l~~~qV~~WFqNrR~ 56 (61)
T 2hdd_A 30 ERRRQQLSSELGLNEAQIKIWFKNKRA 56 (61)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHhhhhcc
Confidence 334444555569999999887665553
No 292
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=23.30 E-value=60 Score=23.66 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 118 EYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 118 L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.++.++++..|+.++...+..+++++..|.
T Consensus 59 ERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 59 ERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444444443
No 293
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=23.22 E-value=17 Score=28.68 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=0.0
Q ss_pred CCChhhhhcccHHHHHHHH
Q psy6769 53 DISDDDLVTISVRDLNRQL 71 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lL 71 (164)
+.+-|||.+||.+||-+++
T Consensus 28 G~~ld~Ll~ms~eel~~L~ 46 (154)
T 3iz6_R 28 GVDLDALLDMSTDDLVQLF 46 (154)
T ss_dssp -------------------
T ss_pred cCcHHHHHhCCHHHHHHHc
Confidence 5577899999999988876
No 294
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=23.20 E-value=1.9e+02 Score=20.12 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=15.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 112 E~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
+....+.-.++..|++.+..+..+.|.+..++..
T Consensus 36 e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 36 EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444443
No 295
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=23.20 E-value=57 Score=21.71 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.0
Q ss_pred CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHh
Q psy6769 53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRR 89 (164)
Q Consensus 53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRR 89 (164)
-.|.|.|...++++|-.. -|+|++....|...-|
T Consensus 28 i~TvedlA~~~~~eL~~i---~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 28 VCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAAR 61 (70)
T ss_dssp CCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHH
T ss_pred CCcHHHHHcCCHHHHHHc---cCCCHHHHHHHHHHHH
Confidence 458899999999999886 4999999999987655
No 296
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=23.04 E-value=1.4e+02 Score=22.52 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhc
Q psy6769 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKN 93 (164)
Q Consensus 52 i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKN 93 (164)
.+||.+++..|-.+=|++. ++|+..|+..||.+.-
T Consensus 43 ~~~t~~e~~~lI~~yl~R~-------d~ELeql~~~rR~gRp 77 (144)
T 2kkm_A 43 PIFDHAHTREFIQSFIERD-------DTELDELKKKRRSNRP 77 (144)
T ss_dssp CCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHHhcC-------cHHHHHHHHhhCCCCC
Confidence 3799999999976656553 7899999999987643
No 297
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.90 E-value=2e+02 Score=20.21 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=15.7
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLK 142 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k 142 (164)
|..-+..|-+.++.|-.|.+.++.|+.+.++-
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555444443
No 298
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=22.57 E-value=1.2e+02 Score=22.41 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q psy6769 114 EKSQEYQDMELMEQDCNLMR 133 (164)
Q Consensus 114 e~~~L~~qie~L~~E~~~l~ 133 (164)
|+.+|+.|++.+...+.|++
T Consensus 5 e~~~l~~qi~~~ekr~~RLK 24 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLK 24 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555666655555554
No 299
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.52 E-value=91 Score=19.34 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6769 120 QDMELMEQDCNLMREE 135 (164)
Q Consensus 120 ~qie~L~~E~~~l~~E 135 (164)
.|+.+|..+++.++.|
T Consensus 15 eQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 15 EQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555554
No 300
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=22.49 E-value=75 Score=19.88 Aligned_cols=20 Identities=5% Similarity=0.214 Sum_probs=11.2
Q ss_pred HHHHhHHhHHHHHHHHHHHH
Q psy6769 108 KDELETEKSQEYQDMELMEQ 127 (164)
Q Consensus 108 ~~~LE~e~~~L~~qie~L~~ 127 (164)
+..||..+..|..++..|..
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566665555555555544
No 301
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.45 E-value=1.6e+02 Score=20.95 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhh-hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q psy6769 74 RGLSREDIIKMKQRRRT-LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMRE 134 (164)
Q Consensus 74 ~gLs~eev~~LKqrRRt-LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~ 134 (164)
-+-|..--..|=.+||. |. .=+++...|-.++.++..++..|+.++.+++.
T Consensus 15 e~pse~YWk~lAE~Rr~AL~----------eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 15 ENPSSQYWKEVAEQRRKALY----------EALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp CCTTCTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666665 43 23677777777788888888888888776654
No 302
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=22.41 E-value=1.5e+02 Score=18.44 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=24.1
Q ss_pred CCCChhhhhcc----------cHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 52 IDISDDDLVTI----------SVRDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 52 i~fSDeeLvsm----------sVreLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
..||.+|+..| +..+-..+.+.-|||..+|.-+=|-||.
T Consensus 8 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 56 (63)
T 2h1k_A 8 TAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRM 56 (63)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhh
Confidence 45555555444 3344444555569999999887666653
No 303
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.25 E-value=1.7e+02 Score=18.97 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=28.4
Q ss_pred CCCCCChhhhhcc----------cHHHHHHHHHhCCCCHHHHHHHHHHHh
Q psy6769 50 PVIDISDDDLVTI----------SVRDLNRQLKMRGLSREDIIKMKQRRR 89 (164)
Q Consensus 50 ~~i~fSDeeLvsm----------sVreLN~lLk~~gLs~eev~~LKqrRR 89 (164)
+...||.+|+-.| +..+...+.+.-|||..+|.-+=|-||
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR 59 (80)
T 2dmq_A 10 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNAR 59 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHH
Confidence 4557788777665 455555666677999999988866655
No 304
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.19 E-value=1.2e+02 Score=26.69 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 117 QEYQDMELMEQDCNLMREELHAYSLKCE 144 (164)
Q Consensus 117 ~L~~qie~L~~E~~~l~~E~d~~K~k~e 144 (164)
.++.+..++..|+..+.+++...+.+..
T Consensus 43 ~l~~e~~r~~~e~~~~~~~~~~~~~~i~ 70 (434)
T 4b4t_M 43 IFRSELQRLSHENNVMLEKIKDNKEKIK 70 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 305
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=22.13 E-value=1.2e+02 Score=18.40 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=15.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 68 NRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 68 N~lLk~~gLs~eev~~LKqrRRt 90 (164)
..+.+.-|||..+|.-+=|-||.
T Consensus 28 ~~LA~~l~l~~~qV~~WFqNRR~ 50 (56)
T 3a03_A 28 AALAKALRMTDAQVKTWFQNRRT 50 (56)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCHHHhhHhhHHhhh
Confidence 33444459999999887666553
No 306
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=22.07 E-value=2.2e+02 Score=22.86 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHH-----hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 76 LSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL-----ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA 145 (164)
Q Consensus 76 Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~L-----E~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~ 145 (164)
.|.+++.+|+.++ .+|+-|+.= +++..+ ......|..+++.|..+..++..-++.+...++.
T Consensus 42 Y~~~dl~~L~~I~-~lr~~G~sL-------~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~ 108 (249)
T 3qao_A 42 YSEKDVDKLQQIL-FFKELDFPL-------KKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKN 108 (249)
T ss_dssp BCHHHHHHHHHHH-HHHHTTCCH-------HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHH-HHHHCCCCH-------HHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999998 567766632 222111 1123345555666666666555555555544443
No 307
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.00 E-value=2e+02 Score=21.28 Aligned_cols=7 Identities=0% Similarity=0.216 Sum_probs=3.2
Q ss_pred HHHHHHH
Q psy6769 64 VRDLNRQ 70 (164)
Q Consensus 64 VreLN~l 70 (164)
-.+|...
T Consensus 52 ~~~f~~~ 58 (132)
T 1ykh_B 52 PEEFSNT 58 (132)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3455443
No 308
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=21.92 E-value=1.5e+02 Score=18.21 Aligned_cols=26 Identities=19% Similarity=0.027 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 65 RDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 65 reLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
.+-..+.+.-|||..+|.-+=|-||.
T Consensus 29 ~~r~~La~~l~l~~~qV~~WFqNrR~ 54 (60)
T 1jgg_A 29 PRRCELAAQLNLPESTIKVWFQNRRM 54 (60)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHhhHHHHh
Confidence 33344444559999999888666653
No 309
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.92 E-value=1.6e+02 Score=18.67 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=28.0
Q ss_pred CCCCCChhhhhcc----------cHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 50 PVIDISDDDLVTI----------SVRDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 50 ~~i~fSDeeLvsm----------sVreLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
+...||.+|+-.| +..+-..+.+.-|||..+|.-+=|-||.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 60 (70)
T 2djn_A 10 PRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRS 60 (70)
T ss_dssp SSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 3456666666554 4555566666779999999988766654
No 310
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=21.82 E-value=2.7e+02 Score=23.82 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=29.8
Q ss_pred cccCchhhHHHHHhhhccCCCCCCCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHh
Q psy6769 25 LIPCSKKNVELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRR 89 (164)
Q Consensus 25 ~~~~~~~~~e~l~~~~~~~~pl~p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRR 89 (164)
-.|..++.++.|..+.-.+. -.....|+|+.+..+ ++--++.+..+.++..-+..+..-..
T Consensus 323 ~~p~~e~~~~iL~~~~~~~~---~~~~~~i~~~al~~l-~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 323 DQPSVDESIQILQGLRDRYE---AHHRVSITDDAIEAA-VKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp CCCCHHHHHHHHHHTTTTSG---GGSSCSCCHHHHHHH-HHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---HhcCCCCCHHHHHHH-HHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 34555556666654322211 123456777665444 22233333335566666666655443
No 311
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.59 E-value=1.9e+02 Score=19.41 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=20.1
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+......-.++..|.+.+..+..++|.+..++....
T Consensus 32 ~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 32 AEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666666666666555555433
No 312
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=21.50 E-value=66 Score=21.58 Aligned_cols=36 Identities=14% Similarity=0.366 Sum_probs=30.3
Q ss_pred CCC-ChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 52 IDI-SDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 52 i~f-SDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
.+| |.|++...|.++|-.. -|++.+-+..|+.+-|.
T Consensus 25 ~Gf~tve~vA~~~~~eL~~I---~G~dE~~a~~l~~~A~~ 61 (70)
T 1u9l_A 25 EGFSTLEELAYVPMKELLEI---EGLDEPTVEALRERAKN 61 (70)
T ss_dssp TTCCCHHHHHHSCHHHHTTS---TTCCHHHHHHHHHHHHH
T ss_pred cCcCcHHHHHcCCHHHHhhc---cCCCHHHHHHHHHHHHH
Confidence 355 7889999999998776 69999999999988765
No 313
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=21.29 E-value=2.5e+02 Score=20.60 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhchHHHHhhHHHHHHHHHHHh---HHhHHH-------------------HHHHHHHHHHHHHHHHHHHH
Q psy6769 81 IIKMKQRRRTLKNRGYAASCRIKRIEQKDELE---TEKSQE-------------------YQDMELMEQDCNLMREELHA 138 (164)
Q Consensus 81 v~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE---~e~~~L-------------------~~qie~L~~E~~~l~~E~d~ 138 (164)
+..|.+++..|.+ +-.+|..+|++...+. .+..++ ...++.|.++-..+..++.+
T Consensus 85 l~~L~~~w~~L~~---~w~~r~~~L~~~l~l~~F~~d~~~~~~Wl~~~e~~L~~~~~g~sl~~ve~LlkkH~~fe~~l~~ 161 (185)
T 3lbx_B 85 LQQVMSRRKEMNE---KWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTAS 161 (185)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554 4567888888765544 111111 12456666677777777777
Q ss_pred HHHHHHHHHH
Q psy6769 139 YSLKCEALIK 148 (164)
Q Consensus 139 ~K~k~e~L~~ 148 (164)
...++.+|.+
T Consensus 162 ~~e~i~~L~~ 171 (185)
T 3lbx_B 162 WAERFAALEK 171 (185)
T ss_dssp THHHHHHHHS
T ss_pred hHHHHHHHhh
Confidence 7777777664
No 314
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.22 E-value=2.3e+02 Score=20.15 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=15.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 113 TEKSQEYQDMELMEQDCNLMREELHAYSL 141 (164)
Q Consensus 113 ~e~~~L~~qie~L~~E~~~l~~E~d~~K~ 141 (164)
.+...-..+|+.|..++.+.++-+..++.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444555555555555555555554
No 315
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.09 E-value=1.6e+02 Score=18.55 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=26.3
Q ss_pred CCCCCChhhhhcc----------cHHHHHHHHHhCCCCHHHHHHHHHHHh
Q psy6769 50 PVIDISDDDLVTI----------SVRDLNRQLKMRGLSREDIIKMKQRRR 89 (164)
Q Consensus 50 ~~i~fSDeeLvsm----------sVreLN~lLk~~gLs~eev~~LKqrRR 89 (164)
+...||.+|+..| +..+...+.+.-|||..+|.-+=|-||
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR 59 (70)
T 2dmu_A 10 HRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 59 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccc
Confidence 3456777776655 344444555556999999988766555
No 316
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.62 E-value=2.1e+02 Score=19.56 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 116 SQEYQDMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 116 ~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
..|...++.+..++..+....+.+..+++.|.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555544443
No 317
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.49 E-value=1.8e+02 Score=18.57 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCCCCCCCChhhhhcc----------cHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q psy6769 47 SPSPVIDISDDDLVTI----------SVRDLNRQLKMRGLSREDIIKMKQRRRT 90 (164)
Q Consensus 47 ~p~~~i~fSDeeLvsm----------sVreLN~lLk~~gLs~eev~~LKqrRRt 90 (164)
+-.....||.+|+..| +..+--.+.+.-|||..+|.-+=|-||.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 59 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRY 59 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhH
Confidence 3445567888877655 3444445555569999999877665553
No 318
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=20.38 E-value=2e+02 Score=22.72 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=28.5
Q ss_pred CCCCCCCCCCChhhhhcccHHHHHHHHHhC-------CCCHHHHHH
Q psy6769 45 PLSPSPVIDISDDDLVTISVRDLNRQLKMR-------GLSREDIIK 83 (164)
Q Consensus 45 pl~p~~~i~fSDeeLvsmsVreLN~lLk~~-------gLs~eev~~ 83 (164)
|.+|.....-+||+...++.+++...|..+ +.|.+++..
T Consensus 181 ~psa~l~~~q~de~~lg~~y~~ld~~l~~~~~~~~~~~~~~~~i~~ 226 (268)
T 1xng_A 181 PPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQTKPIDTETLAQ 226 (268)
T ss_dssp CCCCCSSTTCCHHHHHSSCHHHHHHHHHHHHHHSSSSCCCHHHHHH
T ss_pred CCCcCcCCCCcchhhcCCCHHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 334444446789999999999999988764 467776654
No 319
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=20.37 E-value=55 Score=22.60 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHH
Q psy6769 102 IKRIEQKDELETEKSQEYQDMELMEQD 128 (164)
Q Consensus 102 ~KRl~q~~~LE~e~~~L~~qie~L~~E 128 (164)
.+|.+++.-||.-..+|+.+++.++.+
T Consensus 42 ~~r~DEV~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 42 AGRMDEVRTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456899999999988888888877543
No 320
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.30 E-value=87 Score=27.56 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 121 DMELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 121 qie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++..++.|+.++..|...++.++..+.
T Consensus 40 e~~~l~~e~~r~~~e~~~~~~~~~~~~ 66 (434)
T 4b4t_M 40 EIRIFRSELQRLSHENNVMLEKIKDNK 66 (434)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444443
No 321
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=20.28 E-value=2.5e+02 Score=21.83 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=27.9
Q ss_pred CCCCCCCCCCChhhhhcccHHHHHHHHHh---CCCCHHHHHH
Q psy6769 45 PLSPSPVIDISDDDLVTISVRDLNRQLKM---RGLSREDIIK 83 (164)
Q Consensus 45 pl~p~~~i~fSDeeLvsmsVreLN~lLk~---~gLs~eev~~ 83 (164)
|.+|.....-+||+.+.++.+.+...|.. .|.+.+++..
T Consensus 178 ~ps~~l~~~q~de~~lg~~y~~ld~~l~~~~~~~~~~~~i~~ 219 (257)
T 2e18_A 178 KPSAGLWEGQTDEDELGISYNLLDEILWRMIDLKIGKEEIAK 219 (257)
T ss_dssp CCCCCSSTTCCHHHHHTSCHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred CCCCCcCCCCcCHhhcCCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 33444444678999999999999998875 3566666655
No 322
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.21 E-value=2.2e+02 Score=21.71 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 122 MELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 122 ie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
.+....|+....+|-+.+-.+++.+.
T Consensus 101 ~~~~~~el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 101 LVEVEDEKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 323
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.07 E-value=1.1e+02 Score=24.63 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769 122 MELMEQDCNLMREELHAYSLKCEALI 147 (164)
Q Consensus 122 ie~L~~E~~~l~~E~d~~K~k~e~L~ 147 (164)
++..+.+......+++..+.+++.+.
T Consensus 117 ~~~a~~~~~~a~a~~~~~~~~l~~~~ 142 (369)
T 4dk0_A 117 LNTAKATLNNAKAEMDVVQENIKQAE 142 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555544443
Done!