RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6769
(164 letters)
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 83.9 bits (207), Expect = 6e-22
Identities = 54/101 (53%), Positives = 76/101 (75%), Gaps = 2/101 (1%)
Query: 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL 111
++D++LVT+SVR+LN+ L RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+EL
Sbjct: 6 TSLTDEELVTMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEEL 63
Query: 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152
E +K++ Q++E + + M+ EL A K EAL FA
Sbjct: 64 EKQKAELQQEVEKLASENASMKLELDALRSKYEALQNFART 104
>2wt7_B Transcription factor MAFB; transcription, transcription regulation,
nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 80.0 bits (197), Expect = 1e-20
Identities = 46/90 (51%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 57 DDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKS 116
D LV++SVR+LNR L RG +++++I++KQ+RRTLKNRGYA SCR KR++QK LE EK+
Sbjct: 1 DQLVSMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKT 58
Query: 117 QEYQDMELMEQDCNLMREELHAYSLKCEAL 146
Q Q +E ++Q+ + + E AY +K E L
Sbjct: 59 QLIQQVEQLKQEVSRLARERDAYKVKSEKL 88
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA LDA; 2.50A
{Caenorhabditis elegans} SCOP: a.37.1.1
Length = 92
Score = 54.2 bits (130), Expect = 1e-10
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL 111
+ +S + +S+ +L + LK LS +++ RR KN+ A +CR +R ++ D++
Sbjct: 29 LPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM 88
Query: 112 ETE 114
Sbjct: 89 SHY 91
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 91
Score = 40.7 bits (95), Expect = 1e-05
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQ 107
I D +V + V D N L L+ + ++ RR KN+ A + R +++E
Sbjct: 33 IPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLET 88
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo sapiens}
SCOP: h.1.3.1
Length = 61
Score = 36.2 bits (84), Expect = 4e-04
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREEL 136
K+R+ +NR A+ R KR LE + ++ + L+R E+
Sbjct: 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 9e-04
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 28/102 (27%)
Query: 1 MITCSNPEPSYVFQLGLFILNFTLLIPCSKKNVEL-LVN----FVLRVPPLSPSPVIDIS 55
M++ SN V + N L P K+ VE+ LVN V+ PP S
Sbjct: 338 MLSISNLTQEQVQDY-VNKTNSHL--PAGKQ-VEISLVNGAKNLVVSGPPQS-------- 385
Query: 56 DDDLVTISVRDLNRQL-KMRGLSREDI--IKMKQRRRTLKNR 94
L LN L K + S D I +R+ NR
Sbjct: 386 ---LYG-----LNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Score = 37.0 bits (85), Expect = 0.002
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 52/160 (32%)
Query: 27 PCSKKNVELLVNFVL----RVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRG------- 75
P + EL+ F+ V P D ++ + + + + G
Sbjct: 54 PTTP--AELVGKFLGYVSSLVEPSKVG-----QFDQVLNLCLTEFENCY-LEGNDIHALA 105
Query: 76 --LSREDIIKMKQRRRTLKNRGYAASCRIKRIEQK-------DELETEKS--------Q- 117
L +E+ + + + +KN A KR K + + Q
Sbjct: 106 AKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 118 ---EYQDMELMEQDCNLMREELHA-YSLKCEALIKFAAKH 153
+Y + EL +L+ Y + LIKF+A+
Sbjct: 165 NTDDYFE-EL---------RDLYQTYHVLVGDLIKFSAET 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.001
Identities = 27/169 (15%), Positives = 62/169 (36%), Gaps = 40/169 (23%)
Query: 23 TLLIPCSKKNVELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSRE--- 79
LL K+ + L L + ++ D++ ++ ++ L+ + + L RE
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLD--CRPQDLPREVLT 324
Query: 80 ------DII--KMKQRRRTLKNRGYAASCRIKRIEQK--DELETEKSQE-YQDM------ 122
II ++ T N + ++ I + + LE + ++ + +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 123 -------------ELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIP 158
++++ D ++ +LH YSL + K + I IP
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL----VEKQPKESTISIP 429
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA
complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F
2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Length = 62
Score = 33.9 bits (78), Expect = 0.002
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREEL 136
K R+ ++NR A+ R +++E+ LE + + N++RE++
Sbjct: 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQV 52
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 33.2 bits (76), Expect = 0.004
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREEL 136
K+R R +N+ AA CR +R E D L+ E Q + ++ + + +E
Sbjct: 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK 53
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.009
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 23/79 (29%)
Query: 79 EDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHA 138
E I K ++ +R KR+++ D Q E E+ +++L
Sbjct: 85 ESIRKWREEQR-------------KRLQELDAASKVMEQ-----EWREK----AKKDLEE 122
Query: 139 -YSLKCEALIKFAAKHKIH 156
+ E + K ++I
Sbjct: 123 WNQRQSEQVEKNKINNRIA 141
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA
complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Length = 55
Score = 31.6 bits (72), Expect = 0.016
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 85 KQRRRTLKNRGYAASCRIKRIEQKDELETE-KSQEYQDMELMEQDCNLMREELH 137
K+ R +KNR A R K+ E LE E Q+ L+E+ L H
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSH 54
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
ssgcid, beta helix, structural genomics, seattle
structural center for infectious disease, transferase;
1.80A {Burkholderia thailandensis}
Length = 283
Score = 32.3 bits (74), Expect = 0.046
Identities = 7/52 (13%), Positives = 19/52 (36%)
Query: 71 LKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDM 122
L+ RG S + I ++ R L + ++ + + + + +
Sbjct: 219 LRRRGFSPDAISALRSAYRILYKNSLSLEEAKVQLSELAQAGGDGDAAVKAL 270
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA
complex, transcription/DNA complex; HET: DNA; 2.00A
{Schizosaccharomyces pombe} SCOP: h.1.3.1
Length = 70
Score = 30.4 bits (68), Expect = 0.059
Identities = 10/69 (14%), Positives = 28/69 (40%)
Query: 78 REDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELH 137
R++ + +R +NR + R ++ + LET+ + + + +R+++
Sbjct: 1 RKNSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60
Query: 138 AYSLKCEAL 146
+ L
Sbjct: 61 QLEEELRIL 69
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein;
LEFT-handed parallel beta helix, lipid A biosynthesis,
lipid synthesis; 2.10A {Arabidopsis thaliana}
Length = 305
Score = 31.3 bits (71), Expect = 0.10
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 71 LKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCN 130
L+ G + ++ ++ R + S + E E+ QE + +
Sbjct: 226 LRRNGFTMSEMKSLRAAYRKIFMSTETVSLSFEERLT----ELEQDQELYSVPAVSAMLQ 281
Query: 131 LMRE 134
+R+
Sbjct: 282 SIRD 285
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 29.2 bits (66), Expect = 0.12
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 84 MKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQ-EYQDMELMEQDCNLMRE 134
MK+ ++ +N+ A R K+ +++ L E + E ++ L E+ +L +E
Sbjct: 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKE 52
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.1 bits (68), Expect = 0.34
Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 79 EDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHA 138
I++++++ +E+ + LE S E + + + + EE
Sbjct: 928 NKIMQLQRKIDEQNKE------YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981
Query: 139 YSLKCEALIKFAAKHKIHI 157
+ + +L + AK + +
Sbjct: 982 ATNRVLSLQEEIAKLRKEL 1000
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 29.8 bits (66), Expect = 0.49
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 34 ELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKN 93
E+L N+ L I ++D+D + S +LNRQ R +D+ K K
Sbjct: 439 EMLKNWALLGLGSGSDGYIVVTDNDSIEKS--NLNRQFLFR---PKDVGKNKSEVAAEAV 493
Query: 94 RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDC 129
+ K + D++ E + + D D
Sbjct: 494 CAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDF 529
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta
helix; HET: U20; 1.74A {Escherichia coli K12} SCOP:
b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Length = 262
Score = 28.3 bits (64), Expect = 1.1
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 71 LKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDM 122
LK RG SRE I ++ + + G I + E E +
Sbjct: 202 LKRRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAE----LAETYPEVKAF 249
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 27.6 bits (61), Expect = 2.1
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 24 LLIPCSKKNVELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIK 83
L+I ELL N L S I + D D TI V +LNRQ R +DI +
Sbjct: 415 LVIGAGGLGCELLKNLAL-----SGFRQIHVIDMD--TIDVSNLNRQFLFR---PKDIGR 464
Query: 84 MK 85
K
Sbjct: 465 PK 466
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA
complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Length = 87
Score = 26.5 bits (58), Expect = 2.1
Identities = 10/69 (14%), Positives = 24/69 (34%)
Query: 71 LKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCN 130
+K + D + + R +N R K + E + + + + E +++
Sbjct: 1 VKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60
Query: 131 LMREELHAY 139
+ EL
Sbjct: 61 QLSRELSTL 69
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university
of washingto niaid, oxidoreductase, S genomics; HET:
NAP; 1.75A {Giardia lamblia}
Length = 334
Score = 27.2 bits (61), Expect = 2.7
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E+H + +A +KF + I +
Sbjct: 200 EIHPW-HPNDATVKFCLDNGIGV 221
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
O-acyltransferase; L.interrogans LPXA, LPXA, LPXA
acyltransferase; 2.10A {Leptospira interrogans} PDB:
3i3a_A* 3i3x_A*
Length = 259
Score = 27.2 bits (61), Expect = 2.8
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 71 LKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDM 122
+K G S E +K + + + G + + +E ++ + +
Sbjct: 197 MKRAGFSPEVRNAIKHAYKVIYHSGISTRKALDELEA----SGNLIEQVKYI 244
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel,
dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis}
SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A*
1sm9_A* 1r38_A* 1z9a_A*
Length = 322
Score = 26.8 bits (60), Expect = 3.2
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E H Y L+ LI+FA K + I
Sbjct: 193 EHHPY-LQQPKLIEFAQKAGVTI 214
>2ao0_A Aldehyde dehydrogenase; TIM barrel, aldo-keto reductase, ternary
complex; HET: NAP FID; 1.85A {Sus scrofa} PDB: 3h4g_A*
3cv7_A* 3fx4_A* 1hqt_A* 1ae4_A* 1cwn_A* 2alr_A
Length = 324
Score = 26.8 bits (60), Expect = 3.3
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E H Y L LI + +
Sbjct: 185 ECHPY-LAQNELIAHCQARGLEV 206
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 26.5 bits (59), Expect = 3.7
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 39 FVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRG 75
L + S + I I+ DD + SVR + L G
Sbjct: 172 STLAIGNASVT-HITITIDDQIYASVRSIGVPLVEEG 207
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 25.9 bits (57), Expect = 5.2
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 33 VELLVNFVLRVPPLSPSPVIDISDDDLVTIS 63
++L+V + P LS P ++ + VT
Sbjct: 89 LDLVVTEMYDTPTLSVHPGPEVISGEKVTFY 119
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like
protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A
{Rattus norvegicus} PDB: 3qkz_A*
Length = 316
Score = 26.3 bits (59), Expect = 5.2
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E H Y L E LI++ I +
Sbjct: 186 ECHPY-LTQEKLIQYCHSKGIAV 207
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT;
0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A*
1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A*
2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A*
2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Length = 316
Score = 26.3 bits (59), Expect = 5.6
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E H Y L E LI++ I +
Sbjct: 186 ECHPY-LTQEKLIQYCQSKGIVV 207
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic
tetrad, hepes, NADP, bIle catabolism, disease mutation,
lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens}
PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A*
3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Length = 326
Score = 26.0 bits (58), Expect = 5.7
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E H Y L+KF +H I I
Sbjct: 195 ECHPY-FTQPKLLKFCQQHDIVI 216
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961;
structural genomics, PSI, protein structure initiative;
1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Length = 317
Score = 26.0 bits (58), Expect = 5.9
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
ELH Y + F KH I +
Sbjct: 177 ELHLY-FPQHDHVDFCKKHNISV 198
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase;
HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Length = 344
Score = 26.0 bits (58), Expect = 5.9
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E+H K + + + KH IHI
Sbjct: 214 EMHPG-WKNDKIFEACKKHGIHI 235
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase,
NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 1lwi_A*
Length = 323
Score = 26.0 bits (58), Expect = 6.5
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E H Y L ++ + I +
Sbjct: 192 ECHLY-LNQSKMLDYCKSKDIIL 213
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
UDP-N-acetylglucosamine acyltransferase, LPXA,
LEFT-handed B structure; HET: SOG TLA; 2.10A
{Helicobacter pylori} SCOP: b.81.1.1
Length = 270
Score = 26.1 bits (58), Expect = 6.5
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDM 122
+ L +DI + + L + K + E + +++
Sbjct: 200 QLLESKDIDFIYALYKRLFRPIPSLRESAKLELE----EHANNPFVKEI 244
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate,
citrulline, ST genomics, structural genomics consortium,
SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Length = 413
Score = 26.0 bits (58), Expect = 6.6
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 144 EALIKFAAKHKIHIPI 159
L+++A +H I IP+
Sbjct: 159 NDLMEYAKQHGIPIPV 174
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase;
HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB:
1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A*
3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A*
1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Length = 331
Score = 26.0 bits (58), Expect = 7.3
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E H Y L+ F I +
Sbjct: 192 ECHPY-FNRSKLLDFCKSKDIVL 213
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics, ligase; 1.65A {Thermotoga maritima}
SCOP: c.26.2.1 d.210.1.1
Length = 421
Score = 26.0 bits (58), Expect = 7.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 144 EALIKFAAKHKIHIPI 159
LI +A + I I +
Sbjct: 168 TDLINYAMEKGIPIKV 183
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Length = 335
Score = 25.6 bits (57), Expect = 8.0
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E H + L +F +H+
Sbjct: 202 ECHPS-WRQTKLQEFCKSKGVHL 223
>1kor_A Argininosuccinate synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: ANP ARG; 1.95A {Thermus thermophilus}
SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A
1kh2_A* 1kh3_A* 1j20_A*
Length = 400
Score = 25.9 bits (58), Expect = 8.0
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 144 EALIKFAAKHKIHIPI 159
+ +I +A H I +P+
Sbjct: 151 KEMIAYAEAHGIPVPV 166
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Length = 331
Score = 25.6 bits (57), Expect = 8.2
Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 135 ELHAYSLKCEALIKFAAKHKIHI 157
E H + + L + +H+
Sbjct: 198 ECHPV-WQQQGLHELCKSKGVHL 219
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding,
eukaryotic regulatory protein, transcription/DNA
complex; HET: DNA; 2.20A {Saccharomyces cerevisiae}
SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Length = 63
Score = 24.0 bits (52), Expect = 8.3
Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 79 EDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHA 138
D +K+ R N A R +++++ +LE + + +E + +++ +
Sbjct: 7 SDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 25.6 bits (57), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 144 EALIKFAAKHKIHIPIEL 161
EAL +FAA+ K+ IE+
Sbjct: 294 EAL-QFAAEGKVKTIIEV 310
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 25.7 bits (57), Expect = 9.0
Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 7/25 (28%)
Query: 133 REELHAYSLKCEALIKFAAKHKIHI 157
++ L ++++ F +H IH+
Sbjct: 207 KDTL-------KSVLSFTNQHNIHL 224
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 25.6 bits (57), Expect = 9.1
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 144 EALIKFAAKHKIHIPIEL 161
EAL F A+ + PI++
Sbjct: 303 EAL-DFFARGLVKSPIKV 319
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 25.4 bits (56), Expect = 9.4
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 51 VIDISDDDLVTISVRDLNRQLK 72
+ D + D T + RD + ++
Sbjct: 170 IADQTRKDRDTQAARDADEYIR 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.389
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,466,884
Number of extensions: 138810
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 85
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)