RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6769
         (164 letters)



>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 41

 Score = 67.5 bits (165), Expect = 9e-17
 Identities = 29/43 (67%), Positives = 40/43 (93%), Gaps = 2/43 (4%)

Query: 54 ISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGY 96
          ++D++LVT+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGY
Sbjct: 1  LTDEELVTMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGY 41


>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
          Length = 74

 Score = 42.5 bits (100), Expect = 9e-07
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 52  IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL 111
           + +S   +  +S+ +L + LK   LS      +++ RR  KN+  A +CR +R ++ D++
Sbjct: 15  LPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM 74


>d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory
           protein vp16 {Herpes simplex virus type 1 [TaxId:
           10298]}
          Length = 356

 Score = 26.0 bits (57), Expect = 2.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 63  SVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRI 105
           SVR L+RQ  MRG  R+     +  R T+ +R Y  + R+ R+
Sbjct: 140 SVRQLHRQAHMRGRDRD---LGEMLRATIADRYYRETARLARV 179


>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
           synthase, DHBP synthase, RibB {Archaeon
           Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 219

 Score = 25.7 bits (56), Expect = 2.7
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 9/35 (25%)

Query: 123 ELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHI 157
           E+M  D N M +             ++A KH +  
Sbjct: 184 EMMGDDGNAMSKN---------ETKRYAEKHNLIY 209


>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
           [TaxId: 1063]}
          Length = 288

 Score = 25.3 bits (55), Expect = 3.9
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 56  DDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRR 89
             +L  I  + ++R    RG + E +  +  RR 
Sbjct: 156 VINLEWI--QKIHRDRATRGYTTEAVTDVILRRM 187


>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
           synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
           562]}
          Length = 209

 Score = 24.5 bits (53), Expect = 6.2
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 9/37 (24%)

Query: 121 DMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHI 157
             EL   D  + R             I+FA KH + +
Sbjct: 168 LCELTNDDGTMARAP---------ECIEFANKHNMAL 195


>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco
          (Nicotiana tabacum) [TaxId: 4097]}
          Length = 112

 Score = 24.1 bits (52), Expect = 6.6
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 51 VIDISDDDLVTISVRDLNRQLKMRG 75
          +   S  +L  I   DL + L   G
Sbjct: 72 LAKASRTELKEIVTSDLKQLLGAEG 96


>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase
          {Myxococcus xanthus [TaxId: 34]}
          Length = 108

 Score = 23.7 bits (51), Expect = 7.5
 Identities = 3/25 (12%), Positives = 11/25 (44%)

Query: 51 VIDISDDDLVTISVRDLNRQLKMRG 75
          +++  +D L  ++  +L     +  
Sbjct: 68 LVEQDEDALAALAREELKALAGVTA 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 604,811
Number of extensions: 27090
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 17
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.7 bits)