BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy677
         (451 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score =  178 bits (451), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 79/88 (89%), Positives = 87/88 (98%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ERPYACPVE+CDRRFSRSDELTRHIRIHTGQKPFQCRICMR+FSRSDHLTTHIRTHTGEK
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 373 PFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           PF+CD+CGRKFARSDE+KRH K+HL+Q+
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
           Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score =  177 bits (449), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/87 (90%), Positives = 86/87 (98%)

Query: 312 HERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           HERPYACPVE+CDRRFSRSDELTRHIRIHTGQKPFQCRICMR+FSRSDHLTTHIRTHTGE
Sbjct: 1   HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60

Query: 372 KPFSCDVCGRKFARSDEKKRHAKVHLK 398
           KPF+CD+CGRKFARSDE+KRH K+HL+
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLR 87


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
          Length = 87

 Score =  176 bits (447), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/87 (90%), Positives = 86/87 (98%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ERPYACPVE+CDRRFSRSDELTRHIRIHTGQKPFQCRICMR+FSRSDHLTTHIRTHTGEK
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60

Query: 373 PFSCDVCGRKFARSDEKKRHAKVHLKQ 399
           PF+CD+CGRKFARSDE+KRH K+HL+Q
Sbjct: 61  PFACDICGRKFARSDERKRHTKIHLRQ 87


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score =  175 bits (444), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/88 (88%), Positives = 86/88 (97%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ERPYACPVE+CDRRFSRS ELTRHIRIHTGQKPFQCRICMR+FSRSDHLTTHIRTHTGEK
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 373 PFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           PF+CD+CGRKFARSDE+KRH K+HL+Q+
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
          Length = 90

 Score =  174 bits (441), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 77/88 (87%), Positives = 86/88 (97%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ERPYACPVE+CDRRFSRS +LTRHIRIHTGQKPFQCRICMR+FSRSDHLTTHIRTHTGEK
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 373 PFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           PF+CD+CGRKFARSDE+KRH K+HL+Q+
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 85/88 (96%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ERPYACPVE+CDRRFS+S  LTRHIRIHTGQKPFQCRICMR+FSRSDHLTTHIRTHTGEK
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 373 PFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           PF+CD+CGRKFARSDE+KRH K+HL+Q+
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
          Length = 90

 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 84/88 (95%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ERPYACPVE+CDRRFS S  LTRHIRIHTGQKPFQCRICMR+FSRSDHLTTHIRTHTGEK
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 373 PFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           PF+CD+CGRKFARSDE+KRH K+HL+Q+
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
          Length = 90

 Score =  141 bits (356), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 62/88 (70%), Positives = 72/88 (81%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ERPYACPVE+CDRRFS+   L  HIRIHTGQKPFQCRICMR+FS+   L  HIRTHTGEK
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61

Query: 373 PFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           PF+CD+CGRKFA    + RH K+HL+Q+
Sbjct: 62  PFACDICGRKFATLHTRTRHTKIHLRQK 89


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
          Length = 90

 Score =  141 bits (355), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 62/88 (70%), Positives = 72/88 (81%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ERPYACPVE+CDRRFS+   L  HIRIHTGQKPFQCRICMR+FS+   L  HIRTHTGEK
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61

Query: 373 PFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           PF+CD+CGRKFA    + RH K+HL+Q+
Sbjct: 62  PFACDICGRKFATLHTRDRHTKIHLRQK 89


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
          Length = 73

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/56 (96%), Positives = 56/56 (100%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHT 369
           RPYACPVE+CDRRFSRSDELTRHIRIHTGQKPFQCRICMR+FSRSDHLTTHIRTHT
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73



 Score = 35.0 bits (79), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)

Query: 372 KPFSCDV--CGRKFARSDEKKRHAKVHLKQR 400
           +P++C V  C R+F+RSDE  RH ++H  Q+
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQK 48


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
          Length = 119

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 65/86 (75%), Gaps = 2/86 (2%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           E+PY C  ++C+RRFSRSD+L RH R HTG KPFQC+ C R FSRSDHL TH RTHTGEK
Sbjct: 34  EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93

Query: 373 PFSCDV--CGRKFARSDEKKRHAKVH 396
           PFSC    C +KFARSDE  RH  +H
Sbjct: 94  PFSCRWPSCQKKFARSDELVRHHNMH 119



 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRSFSRSDHLTTHIRTHTG 370
           +RP+ C    C++R+ +   L  H R HTG+KP+QC  + C R FSRSD L  H R HTG
Sbjct: 4   KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVH 396
            KPF C  C RKF+RSD  K H + H
Sbjct: 64  VKPFQCKTCQRKFSRSDHLKTHTRTH 89


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score =  110 bits (274), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/53 (84%), Positives = 50/53 (94%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           KPFQCRICMR+FSRSDHLTTHIRTHTGEKPF+CD+CGRKFARSDE+KRH  + 
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54



 Score = 65.9 bits (159), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTH 364
           +P+ C +  C R FSRSD LT HIR HTG+KPF C IC R F+RSD    H
Sbjct: 2   KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50



 Score = 34.3 bits (77), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 372 KPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           KPF C +C R F+RSD    H + H  ++
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEK 30


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
          Length = 87

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           E+PY CP   C + FS+S  L +H R HTG+KP++C  C +SFS+S  L  H RTHTGEK
Sbjct: 2   EKPYKCP--ECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59

Query: 373 PFSCDVCGRKFARSDEKKRHAKVH 396
           P+ C  CG+ F+RSD   RH + H
Sbjct: 60  PYKCPECGKSFSRSDHLSRHQRTH 83


>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 60/94 (63%), Gaps = 2/94 (2%)

Query: 308 KTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRT 367
           +T   E+PYACP   C + FS+   L  H R HTG+KP++C  C +SFSR D+L TH RT
Sbjct: 98  RTHTGEKPYACP--ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT 155

Query: 368 HTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQRS 401
           HTGEKP+ C  CG+ F+R D    H + H  +++
Sbjct: 156 HTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189



 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 2/88 (2%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           E+PYACP   C + FSRSD L  H R HTG+KP++C  C +SFS    LT H RTHTGEK
Sbjct: 19  EKPYACP--ECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76

Query: 373 PFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           P+ C  CG+ F++    + H + H  ++
Sbjct: 77  PYKCPECGKSFSQRANLRAHQRTHTGEK 104



 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 56/96 (58%), Gaps = 2/96 (2%)

Query: 305 RPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTH 364
           R  +T   E+PY CP   C + FS+   L  H R HTG+KP+ C  C +SFS+  HL  H
Sbjct: 67  RHQRTHTGEKPYKCP--ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124

Query: 365 IRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
            RTHTGEKP+ C  CG+ F+R D    H + H  ++
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160



 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 2/93 (2%)

Query: 308 KTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRT 367
           +T   E+PY CP   C + FS   +LTRH R HTG+KP++C  C +SFS+  +L  H RT
Sbjct: 42  RTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99

Query: 368 HTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           HTGEKP++C  CG+ F++    + H + H  ++
Sbjct: 100 HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132



 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 342 GQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           G+KP+ C  C +SFSRSDHL  H RTHTGEKP+ C  CG+ F+   +  RH + H  ++
Sbjct: 18  GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
           Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 45/61 (73%)

Query: 308 KTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRT 367
           +T   E+PY C  E CD RF+RSDELTRH R HTG KPFQC +C RSFSRSDHL  H++ 
Sbjct: 38  RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

Query: 368 H 368
           H
Sbjct: 98  H 98



 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTG 370
            R + C    C + +++S  L  H+R HTG+KP++C    C   F+RSD LT H R HTG
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVH 396
            KPF C VC R F+RSD    H K H
Sbjct: 73  AKPFQCGVCNRSFSRSDHLALHMKRH 98


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 7/93 (7%)

Query: 316 YACPVENCDRR---FSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTG 370
           + C  E C R    F    +L  HIR+HTG+KPF C    C + F+RS++L  H RTHTG
Sbjct: 58  HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117

Query: 371 EKPFSCDV--CGRKFARSDEKKRHAKVHLKQRS 401
           EKPF C+   C R+FA S ++K+H  VH   +S
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150



 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTG 370
           E+P+ CP   C + F+RS+ L  H R HTG+KPF+C    C R F+ S     H+  HT 
Sbjct: 88  EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147

Query: 371 EK 372
           +K
Sbjct: 148 DK 149



 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 308 KTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           +T   E+P+ C  E CDRRF+ S +  +H+ +HT  K
Sbjct: 113 RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 89

 Score = 79.7 bits (195), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 44/61 (72%)

Query: 308 KTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRT 367
           +T   E+PY C  + C  +F+RSDELTRH R HTG +PFQC+ C R+FSRSDHL  H++ 
Sbjct: 28  RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

Query: 368 H 368
           H
Sbjct: 88  H 88



 Score = 79.7 bits (195), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTGEKP 373
           + C    C + +++S  L  H+R HTG+KP+ C    C   F+RSD LT H R HTG +P
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65

Query: 374 FSCDVCGRKFARSDEKKRHAKVHL 397
           F C  C R F+RSD    H K H 
Sbjct: 66  FQCQKCDRAFSRSDHLALHMKRHF 89



 Score = 62.0 bits (149), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 2/52 (3%)

Query: 351 CMRSFSRSDHLTTHIRTHTGEKPFSCDV--CGRKFARSDEKKRHAKVHLKQR 400
           C +++++S HL  H+RTHTGEKP+ CD   CG KFARSDE  RH + H   R
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 90

 Score = 79.3 bits (194), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 307 SKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTH 364
           S+T  H     C    C + +++S  L  H+R HTG+KP+ C    C   F+RSD LT H
Sbjct: 2   SRTATH----TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 57

Query: 365 IRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHL 397
            R HTG +PF C  C R F+RSD    H K H 
Sbjct: 58  YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 90



 Score = 62.0 bits (149), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 2/52 (3%)

Query: 351 CMRSFSRSDHLTTHIRTHTGEKPFSCDV--CGRKFARSDEKKRHAKVHLKQR 400
           C +++++S HL  H+RTHTGEKP+ CD   CG KFARSDE  RH + H   R
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 65


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 72.4 bits (176), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 4/85 (4%)

Query: 323 CDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTGEKPFSC--DV 378
           C + F  S +L RH  +HTG+KPFQC    C + FS   +L TH+R HTG++P+ C  D 
Sbjct: 40  CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 99

Query: 379 CGRKFARSDEKKRHAKVHLKQRSKK 403
           C +KFA+S   K H   H K ++ +
Sbjct: 100 CNKKFAQSTNLKSHILTHAKAKNNQ 124



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           R  ACP + C + F  +  + +H+  H G +   C  C ++F  S  L  H   HTGEKP
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62

Query: 374 FSC--DVCGRKFARSDEKKRHAKVHLKQR 400
           F C  + CG++F+     + H ++H   R
Sbjct: 63  FQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTG 370
           E+P+ C  E C +RFS    L  H+RIHTG +P+ C    C + F++S +L +HI TH  
Sbjct: 60  EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119

Query: 371 EK 372
            K
Sbjct: 120 AK 121


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
           Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 306 PSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHI 365
           PSKT   ++ + C    C R F++S  L  H R HT ++P+ C IC ++F R DHL  H 
Sbjct: 11  PSKT---KKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65

Query: 366 RTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLK 398
             H+ EKPF C  CG+ F +S     H  +H++
Sbjct: 66  YIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98



 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           +K F C+ C R F++S +L  H RTHT E+P++CD+C + F R D  + H  +H K++
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
           Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ++ Y C    C + F+   +  RH+ +H G +P+ C +C + F    HL  H++ HTG K
Sbjct: 8   DKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64

Query: 373 PFSCDVCGRKFARSDEKKRHA 393
           P+ C++C ++F   D   RH 
Sbjct: 65  PYECNICAKRFMWRDSFHRHV 85



 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           +G K + C+ C +SF+       H+  H G +P+ C VCG+KF        H K+H
Sbjct: 6   SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
           Zinc-Binding Domain Of The Zinc Finger Protein 64,
           Isoforms 1 And 2
          Length = 96

 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 315 PYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPF 374
           P+ C V  C + FSR D+L  H+R HTG KP++C+ C  + + S  L  H+R H+ E+PF
Sbjct: 8   PHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65

Query: 375 SCDVC 379
            C +C
Sbjct: 66  KCQIC 70



 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 345 PFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           P +C +C + FSR D L TH+R HTG KP+ C  C    A S    +H ++H  +R
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63



 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           +PY C  + CD   + S  L +H+RIH+ ++PF+C+IC  +   S  LT H+R+HTG+
Sbjct: 35  KPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90


>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
          Length = 92

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTGEKP 373
           Y C   +C   ++++ +L  H+  HTG+KPF C+   C + F+   HLT H  THTGEK 
Sbjct: 4   YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63

Query: 374 FSCDV--CGRKFARSDEKKRH 392
           F+CD   C  +F      K+H
Sbjct: 64  FTCDSDGCDLRFTTKANMKKH 84



 Score = 40.0 bits (92), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 348
           E+P+ C  E C++ F+    LTRH   HTG+K F C
Sbjct: 31  EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 66


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
           Zinc Finger Protein 278
          Length = 95

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 320 VENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGE--KPFSCD 377
            E C + F     L RH   H+G+KP+ C +C   F R D ++ H+R+H G   KP+ C 
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69

Query: 378 VCGRKFARSDEKKRHAKVHLKQ 399
            CG+ F+R D    H   H+KQ
Sbjct: 70  SCGKGFSRPD----HLNGHIKQ 87



 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 304 NRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRSFSRSDHL 361
           NR   +   E+PY+CPV  C  RF R D ++ H+R H G   KP+ C+ C + FSR DHL
Sbjct: 24  NRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL 81

Query: 362 TTHIR-THTG 370
             HI+  H+G
Sbjct: 82  NGHIKQVHSG 91



 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           +G     C IC + F    HL  H  +H+GEKP+SC VCG +F R D    H + H
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
           Nmr, 25 Structures
          Length = 60

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 346 FQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHA-KVH 396
           F C +C R+F+R +HL  H R+HT EKP+ C +C R F R D   RHA K+H
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54



 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 321 ENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHI-RTHTG 370
           E C R F+R + L RH R HT +KP+ C +C R+F+R D L  H  + H+G
Sbjct: 6   EVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56



 Score = 32.3 bits (72), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 300 RKYPNRPSKTPVHERPYACPVENCDRRFSRSDELTRHI-RIHTG 342
           +++  R  ++  +E+PY C +  C+R F+R D L RH  +IH+G
Sbjct: 15  QEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSG 56



 Score = 32.3 bits (72), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 374 FSCDVCGRKFARSDEKKRHAKVHLKQR 400
           F C+VC R FAR +  KRH + H  ++
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEK 29


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 375
           + C +  C + F RS  L+ H+ IH+  +P+ C+ C + F +   +  H   HTGEKP  
Sbjct: 2   FDCKI--CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59

Query: 376 CDVCGRKFARSDEKKRHAKVH 396
           C VCG+ F++S     H++ H
Sbjct: 60  CQVCGKAFSQSSNLITHSRKH 80



 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 2/57 (3%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTG 370
           RPY  P + C +RF +  ++ +H  IHTG+KP +C++C ++FS+S +L TH R HTG
Sbjct: 28  RPY--PCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82



 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 35/55 (63%)

Query: 346 FQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           F C+IC +SF RS  L+TH+  H+  +P+ C  CG++F +  + K+H  +H  ++
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56


>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
 pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
          Length = 190

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 310 PVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRT 367
           PV  + Y C   +C   ++++ +L  H+  HTG+KPF C+   C + F+   HLT H  T
Sbjct: 7   PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66

Query: 368 HTGEKPFSCDV--CGRKFARSDEKKRH 392
           HTGEK F+CD   C  +F      K+H
Sbjct: 67  HTGEKNFTCDSDGCDLRFTTKANMKKH 93



 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 36/134 (26%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC------------------------ 348
           E+P+ C  E C++ F+    LTRH   HTG+K F C                        
Sbjct: 40  EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99

Query: 349 -RICM---------RSFSRSDHLTTHIRTHTGEKPFSC--DVCGRKFARSDEKKRHAKVH 396
            +IC+         ++F + + L  H  +HT + P+ C  + C ++F+     KRH KVH
Sbjct: 100 IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159

Query: 397 LKQRSKKESKMAVM 410
                KK+   + +
Sbjct: 160 AGYPCKKDDSCSFV 173



 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRSFSRSDHLTTHIRTHTG--- 370
           Y C  ENC + F + ++L  H   HT Q P++C    C + FS    L  H + H G   
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 164

Query: 371 EKPFSCDVCGR 381
           +K  SC   G+
Sbjct: 165 KKDDSCSFVGK 175


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Zinc Finger Protein 24
          Length = 72

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHT 369
           E+PY C VE C + FSRS  L +H R+HTG+KP++C  C ++FS++  L  H R HT
Sbjct: 12  EKPYGC-VE-CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66



 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           +KP+ C  C ++FSRS  L  H R HTGEKP+ C  CG+ F+++     H ++H
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65



 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C  CG+ F+RS    +H +VH  ++
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEK 41


>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
           From Human Krueppel-Like Factor 10
          Length = 72

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 351 CMRSFSRSDHLTTHIRTHTGEKPFSCDV--CGRKFARSDEKKRHAKVH 396
           C +++ +S HL  H RTHTGEKPFSC    C R+FARSDE  RH + H
Sbjct: 25  CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRSFSRSDHLTTHIRTH 368
           R + C    C + + +S  L  H R HTG+KPF C  + C R F+RSD L+ H RTH
Sbjct: 16  RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query: 307 SKTPVHERPYACPVENCDRRFSRSDELTRHIRIH 340
           ++T   E+P++C  + C+RRF+RSDEL+RH R H
Sbjct: 39  TRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
           Northeast Structural Genomics Consortium
          Length = 74

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ++PY C  + C   F     L  H  +HTG+KP++C IC   F+R  +L TH R H+GEK
Sbjct: 15  DKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72

Query: 373 P 373
           P
Sbjct: 73  P 73



 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           KP++C  C  SF    +L +H   HTGEKP+ C++CG +F R    K H ++H
Sbjct: 16  KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68



 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 304 NRPSKTPVH--ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           N  S   VH  E+PY C +  C  +F+R   L  H RIH+G+KP
Sbjct: 32  NLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73


>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
          Length = 155

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSR-SDHLTTHIRTHT 369
           E+P+ C  E C + +SR + L  H+R HTG+KP+ C    C ++FS  SD      RTH+
Sbjct: 65  EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124

Query: 370 GEKPFSCDV--CGRKFARSDEKKRHAKV 395
            EKP+ C +  C +++      ++H K 
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKT 152



 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 10/93 (10%)

Query: 318 CPVENCDRRFSRSDELTRHI---RIHTGQKPFQCRI--C---MRSFSRSDHLTTHIRTHT 369
           C  + C + F   ++L  HI    IH  +K F C    C   +R F     L  H+R HT
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63

Query: 370 GEKPFSC--DVCGRKFARSDEKKRHAKVHLKQR 400
           GEKP  C  + C + ++R +  K H + H  ++
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK 96


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
           Of Zinc Finger Protein 435
          Length = 77

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           R Y C  + C + FS S +L++H R HTG+KP++C  C ++F +  HL  H R HTG  P
Sbjct: 17  RRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74

Query: 374 FS 375
            S
Sbjct: 75  SS 76



 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           ++ ++C  C +SFS S  L+ H RTHTGEKP+ CD CG+ F +      H +VH
Sbjct: 16  RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69


>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
           Suppressor Protein (Wt1) Finger 3
          Length = 29

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 24/29 (82%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           KPFQC+ C R FSRSDHL TH RTHTGEK
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           +P+ C  + C R+FSRSD L  H R HTG+K
Sbjct: 1   KPFQC--KTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 35.0 bits (79), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 372 KPFSCDVCGRKFARSDEKKRHAKVH 396
           KPF C  C RKF+RSD  K H + H
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTH 25


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
           Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
           In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
           In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 375
           Y C V  C R +     L RH  IH+ +K + CR C + F  +++ T H   HTGE+ + 
Sbjct: 23  YICIV--CKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80

Query: 376 CDVCGRKF 383
           C  CG+ F
Sbjct: 81  CLACGKSF 88



 Score = 35.4 bits (80), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 319 PVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           P   C++ F  ++  T+H   HTG++ +QC  C +SF     +++HI++   + P
Sbjct: 52  PCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106



 Score = 32.7 bits (73), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 342 GQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           G+  + C +C RS+     L  H   H+ EK + C  C + F  ++ + +H   H  +R
Sbjct: 19  GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIR---IHTGQKPFQCRICMRSFSRSDHLTTHIRTHT 369
           E+P+ CP   C + + R + L  H     ++  ++ F C +C  +F R   L  H+ +HT
Sbjct: 33  EKPFECP--KCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHT 90

Query: 370 GEKPFSCDVCGRKFARSDEKKRHA-KVH 396
           GE P+ C  C ++F +  + + H  K+H
Sbjct: 91  GEMPYKCSSCSQQFMQKKDLQSHMIKLH 118



 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 318 CPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHT---GEKPF 374
           CP   C ++F     L  H R HTG+KPF+C  C + + R ++L  H   +     E+ F
Sbjct: 10  CPT--CHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67

Query: 375 SCDVCGRKFARSDEKKRHAKVH 396
           +C VC   F R  E + H   H
Sbjct: 68  TCSVCQETFRRRMELRLHMVSH 89



 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           +G    +C  C + F    +L  H R HTGEKPF C  CG+ + R +    H   +   R
Sbjct: 3   SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62

Query: 401 SKK 403
           S++
Sbjct: 63  SEQ 65


>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
           Domain From Human Krueppel-Like Factor 15
          Length = 48

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+AC    C  RFSRSDEL+RH R H+G KP
Sbjct: 10  EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42



 Score = 35.4 bits (80), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 343 QKPFQCRI--CMRSFSRSDHLTTHIRTHTGEKP 373
           +KPF C    C   FSRSD L+ H R+H+G KP
Sbjct: 10  EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42



 Score = 33.9 bits (76), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 371 EKPFSCDV--CGRKFARSDEKKRHAKVH 396
           EKPF+C    CG +F+RSDE  RH + H
Sbjct: 10  EKPFACTWPGCGWRFSRSDELSRHRRSH 37


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 25/31 (80%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C++C ++F++  HL  H +THTGEKP
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C V  C + F++   L +H + HTG+KP
Sbjct: 10  EKPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 28.5 bits (62), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C VC + F +     +H K H  ++
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           ++PF C  C +++  +  L+ H R H G +P SC  CG+ F    E  RH KVH
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55



 Score = 34.3 bits (77), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTH 368
           ERP+ C    C + +  +  L+RH R H G +P  C  C + F     +  H++ H
Sbjct: 2   ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55



 Score = 28.5 bits (62), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQRSK 402
           E+PF C+ CG+ +  +    RH + HL  R +
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPR 33


>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           584- 616) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 25/31 (80%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPF+C+ C ++F ++ HL +H+R HTGEKP
Sbjct: 10  EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C  + C + F ++  L  H+RIHTG+KP
Sbjct: 10  EKPFKC--KECGKAFRQNIHLASHLRIHTGEKP 40


>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
           Factor Sp1f2, Minimized Average Structure
 pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 2)
          Length = 31

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           RP+ C    C +RF+RSDEL RH R HTG+K
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31



 Score = 35.0 bits (79), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 344 KPFQCRI--CMRSFSRSDHLTTHIRTHTGEK 372
           +PF C    C + F+RSD L  H RTHTGEK
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31



 Score = 32.3 bits (72), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 372 KPFSC--DVCGRKFARSDEKKRHAKVH 396
           +PF C    CG++F RSDE +RH + H
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTH 27


>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           612- 644) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPF+C  C +SFS S  L TH R HTGEKP
Sbjct: 10  EKPFECAECGKSFSISSQLATHQRIHTGEKP 40



 Score = 36.6 bits (83), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C    C + FS S +L  H RIHTG+KP
Sbjct: 10  EKPFECA--ECGKSFSISSQLATHQRIHTGEKP 40



 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKPF C  CG+ F+ S +   H ++H  ++
Sbjct: 10  EKPFECAECGKSFSISSQLATHQRIHTGEK 39


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C+ C ++FS++ HL  H R HTGEKP
Sbjct: 10  EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C  + C + FS++  L +H R+HTG+KP
Sbjct: 10  EKPYEC--KECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 30.0 bits (66), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C  CG+ F+++    +H +VH  ++
Sbjct: 10  EKPYECKECGKAFSQTTHLIQHQRVHTGEK 39


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPFQC  C + F+++ HL +H R HTGEKP
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C  E C +RF+++  L  H R+HTG+KP
Sbjct: 10  EKPFQC--EECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 32.3 bits (72), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKPF C+ CG++F ++     H +VH  ++
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +K ++C +C + FS+S HL TH R HTGEKP
Sbjct: 10  EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+ Y C V  C + FS+S  L  H R+HTG+KP
Sbjct: 10  EKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EK + CDVCG++F++S   + H +VH  ++
Sbjct: 10  EKCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C + F+++ HLT H R HTGEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F+++  LT H RIHTG+KP
Sbjct: 10  EKPYKC--NECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C+ CG+ F ++     H ++H  ++
Sbjct: 10  EKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
           Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 347 QCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLK 398
           +C  C + F  + +L  H+RTHTGEKP+ C+ C    A+    + H + H K
Sbjct: 6   ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57



 Score = 35.8 bits (81), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 323 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTH 368
           C + F  +  L  H+R HTG+KP++C  C  + ++   L  H+  H
Sbjct: 10  CGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPF+C  C +S+++  HLT H R HTGEKP
Sbjct: 10  EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C    C + +++   LT+H R+HTG+KP
Sbjct: 10  EKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKP 40


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 41.6 bits (96), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +G KP+ C  C ++F    +L  H+RTHTGEKP
Sbjct: 6   SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 32.0 bits (71), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           +PY C    C + F     L  H+R HTG+KP
Sbjct: 9   KPYGC--SECGKAFRSKSYLIIHMRTHTGEKP 38


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 41.6 bits (96), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPF+C  C ++F+   +L  H RTHTGEKP
Sbjct: 10  EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40



 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C    C + F+    L  H R HTG+KP
Sbjct: 10  EKPFEC--SECQKAFNTKSNLIVHQRTHTGEKP 40


>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
           Finger Protein 278
          Length = 54

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIR-THTGEKPFSCDV 378
           KP+ C+ C + FSR DHL  HI+  HT E+P  C V
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46



 Score = 36.2 bits (82), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 3/38 (7%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIR-IHTGQKPFQCRI 350
           +PY C  ++C + FSR D L  HI+ +HT ++P +C++
Sbjct: 11  KPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46



 Score = 28.9 bits (63), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 372 KPFSCDVCGRKFARSDEKKRHAK-VHLKQRSKK 403
           KP+ C  CG+ F+R D    H K VH  +R  K
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHK 43


>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
           Zinc Finger Protein 32
          Length = 41

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 375
           +G+KP+QC+ C +SFS+   L  H R HTG  P S
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40



 Score = 33.1 bits (74), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C  + C + FS+   L  H R+HTG  P
Sbjct: 8   EKPYQC--KECGKSFSQRGSLAVHERLHTGSGP 38



 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           +GEKP+ C  CG+ F++      H ++H
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLH 33


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 338 RIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK----PFSCDVCGRKFARSDEKKRHA 393
           R HTG+KP+ C  C ++F +   L  H + +         F C  CG+ F R +   RHA
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67



 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)

Query: 366 RTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQ 399
           RTHTGEKP++C  C + F     +K+   +H K+
Sbjct: 8   RTHTGEKPYACSHCDKTF----RQKQLLDMHFKR 37


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C +C +SF     LT H R HTGEKP
Sbjct: 10  EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40



 Score = 36.2 bits (82), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C V  C + F     LT H RIHTG+KP
Sbjct: 10  EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40



 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ CDVC + F        H ++H  ++
Sbjct: 10  EKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C  + C + F  S EL RH RIHTG+KP
Sbjct: 10  EKPYVC--DYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP+ C  C ++F  S  L  H R HTGEKP
Sbjct: 10  EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 36.2 bits (82), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ CD CG+ F  S E  RH ++H  ++
Sbjct: 10  EKPYVCDYCGKAFGLSAELVRHQRIHTGEK 39


>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
          Length = 37

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 20/28 (71%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTH 368
           TG KPFQC  C RSFSRSDHL  H + H
Sbjct: 7   TGIKPFQCPDCDRSFSRSDHLALHRKRH 34



 Score = 33.5 bits (75), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 18/32 (56%)

Query: 366 RTHTGEKPFSCDVCGRKFARSDEKKRHAKVHL 397
           R  TG KPF C  C R F+RSD    H K H+
Sbjct: 4   RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35



 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIH 340
           +P+ CP  +CDR FSRSD L  H + H
Sbjct: 10  KPFQCP--DCDRSFSRSDHLALHRKRH 34


>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 42

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           +G+ P++C  C ++F+R D L +H RTH GE
Sbjct: 6   SGENPYECSECGKAFNRKDQLISHQRTHAGE 36



 Score = 32.0 bits (71), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVHLKQ 399
           +GE P+ C  CG+ F R D+   H + H  +
Sbjct: 6   SGENPYECSECGKAFNRKDQLISHQRTHAGE 36



 Score = 31.6 bits (70), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQ 343
           E PY C    C + F+R D+L  H R H G+
Sbjct: 8   ENPYECS--ECGKAFNRKDQLISHQRTHAGE 36


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP+ C  C ++FS   +L  H+RTH+GEKP
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 33.9 bits (76), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + FS    L  H+R H+G+KP
Sbjct: 10  EKPYGC--SECGKAFSSKSYLIIHMRTHSGEKP 40


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           KP+QC  C ++FS++  L  H R HTGEKP
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           +PY C    C + FS++ +L RH R+HTG+KP
Sbjct: 11  KPYQC--NECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 372 KPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           KP+ C+ CG+ F+++ +  RH +VH  ++
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVHTGEK 39


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C IC +SF++   L  H + HTGEKP
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C +  C + F++  +L  H +IHTG+KP
Sbjct: 10  EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C +CG+ F +  +   H ++H  ++
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C +C ++FS    LT H R H+GEKP
Sbjct: 10  EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40



 Score = 36.6 bits (83), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C V  C + FS    LT+H R+H+G+KP
Sbjct: 10  EKPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40



 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVH 396
           EKP+ CDVC + F+      +H +VH
Sbjct: 10  EKPYECDVCRKAFSHHASLTQHQRVH 35


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + FS++ +L RH RIHTG+KP
Sbjct: 10  EKPYKC--NECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C ++FS++  L  H R HTGEKP
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 21/30 (70%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C+ CG+ F+++ +  RH ++H  ++
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39


>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           887- 919) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP+ C  C ++FS+   L+ H RTHTGEKP
Sbjct: 10  EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + FS+   L+ H R HTG+KP
Sbjct: 10  EKPYGC--NECGKTFSQKSILSAHQRTHTGEKP 40


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C ++F++  +LT H R HTGEKP
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 37.0 bits (84), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F++   LT+H RIHTG+KP
Sbjct: 10  EKPYRC--GECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C  CG+ FA+     +H ++H  ++
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39


>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
           Rrna 55mer (Nmr Structure)
          Length = 87

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRSFSRSDHLTTHIRTHTG--- 370
           Y C  ENC + F + ++L  H   HT Q P++C    C + FS    L  H + H G   
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 371 EKPFSCDVCGRKF 383
           +K  SC   G+ +
Sbjct: 62  KKDDSCSFVGKTW 74



 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 315 PYACPVENCDRRFSRSDELTRHIRIHTG 342
           PY CP E CD+RFS    L RH ++H G
Sbjct: 31  PYECPHEGCDKRFSLPSRLKRHEKVHAG 58



 Score = 33.9 bits (76), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 351 CMRSFSRSDHLTTHIRTHTGEKPFSC--DVCGRKFARSDEKKRHAKVHLKQRSKKESKMA 408
           C ++F + + L  H  +HT + P+ C  + C ++F+     KRH KVH     KK+   +
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68

Query: 409 VM 410
            +
Sbjct: 69  FV 70


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           + P++C  C ++FSR   L +H RTH GEKP
Sbjct: 10  ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40



 Score = 32.7 bits (73), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E PY C    C + FSR  +L  H R H G+KP
Sbjct: 10  ENPYEC--HECGKAFSRKYQLISHQRTHAGEKP 40


>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
           Free Structure With Those In Nucleic-Acid Complexes
          Length = 85

 Score = 39.3 bits (90), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRSFSRSDHLTTHIRTHTG--- 370
           Y C  ENC + F + ++L  H   HT Q P++C    C + FS    L  H + H G   
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 371 EKPFSCDVCGR 381
           +K  SC   G+
Sbjct: 62  KKDDSCSFVGK 72



 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 315 PYACPVENCDRRFSRSDELTRHIRIHTG 342
           PY CP E CD+RFS    L RH ++H G
Sbjct: 31  PYECPHEGCDKRFSLPSRLKRHEKVHAG 58



 Score = 33.9 bits (76), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 351 CMRSFSRSDHLTTHIRTHTGEKPFSC--DVCGRKFARSDEKKRHAKVHLKQRSKKE 404
           C ++F + + L  H  +HT + P+ C  + C ++F+     KRH KVH     KK+
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64


>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
          Length = 33

 Score = 38.9 bits (89), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/28 (64%), Positives = 19/28 (67%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTH 368
           TG KPFQC  C  SFSRSDHL  H + H
Sbjct: 3   TGIKPFQCPDCDWSFSRSDHLALHRKRH 30



 Score = 30.8 bits (68), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVHL 397
           TG KPF C  C   F+RSD    H K H+
Sbjct: 3   TGIKPFQCPDCDWSFSRSDHLALHRKRHM 31



 Score = 29.6 bits (65), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIH 340
           +P+ CP  +CD  FSRSD L  H + H
Sbjct: 6   KPFQCP--DCDWSFSRSDHLALHRKRH 30


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           QKPF+C  C +SF    +L TH R HTGEK
Sbjct: 10  QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39



 Score = 28.5 bits (62), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           ++P+ C   +C + F     L  H RIHTG+K
Sbjct: 10  QKPFECT--HCGKSFRAKGNLVTHQRIHTGEK 39


>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           273- 303) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +G+KPF C  C ++FS   +L  H +TH  EKP
Sbjct: 6   SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPF+C  C + F+++  L +H R HTGEKP
Sbjct: 10  EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C  E C +RF+++ +L  H R+HTG+KP
Sbjct: 10  EKPFKC--EECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKPF C+ CG++F ++ +   H +VH  ++
Sbjct: 10  EKPFKCEECGKRFTQNSQLHSHQRVHTGEK 39


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +K F+C  C ++F++S  LT H R HTGEKP
Sbjct: 10  KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 323 CDRRFSRSDELTRHIRIHTGQKP 345
           C + F++S  LT H RIHTG+KP
Sbjct: 18  CKKTFTQSSSLTVHQRIHTGEKP 40


>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPF+C  C + FSR   L  H + HTGEKP
Sbjct: 10  EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C VE C + FSR   L  H ++HTG+KP
Sbjct: 10  EKPFKC-VE-CGKGFSRRSALNVHHKLHTGEKP 40



 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKPF C  CG+ F+R      H K+H  ++
Sbjct: 10  EKPFKCVECGKGFSRRSALNVHHKLHTGEK 39


>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 484
          Length = 42

 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           +G+KP+ C  C ++F R  H  TH R HTGE
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36



 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQ 343
           E+PY C    C + F R      H RIHTG+
Sbjct: 8   EKPYVCT--ECGKAFIRKSHFITHERIHTGE 36



 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVHLKQ 399
           +GEKP+ C  CG+ F R      H ++H  +
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36


>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           301- 331) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 38.5 bits (88), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           +G+KP+ C  C + FS   +L  H R HTGEK
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 33.5 bits (75), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           E+PY C    C + FS    L  H RIHTG+K
Sbjct: 8   EKPYGC--NECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           +GEKP+ C+ CG+ F+       H ++H  ++
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37


>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           397- 429) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 38.5 bits (88), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C++C ++F  S HL  H   H+GE+P
Sbjct: 10  EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40



 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C V  C + F  S  L +H  +H+G++P
Sbjct: 10  EKPYKCQV--CGKAFRVSSHLVQHHSVHSGERP 40



 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C VCG+ F  S    +H  VH  +R
Sbjct: 10  EKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.5 bits (88), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           T +KPF+C  C +SF +   L +H   HTGEKP
Sbjct: 8   TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C  + CD+ F +   L  H  IHTG+KP
Sbjct: 10  EKPFRC--DTCDKSFRQRSALNSHRMIHTGEKP 40



 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           T EKPF CD C + F +      H  +H  ++
Sbjct: 8   TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 38.5 bits (88), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP+ C  C +SF +  HL  H R HTGEKP
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 35.8 bits (81), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F +   L RH RIHTG+KP
Sbjct: 10  EKPYIC--NECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C+ CG+ F +     RH ++H  ++
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIHTGEK 39


>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 38.5 bits (88), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 346 FQCRICMRSFSRSDHLTTHIRTHTGEK 372
           F C +C R+F+R +HL  H R+HT EK
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEK 29



 Score = 32.0 bits (71), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 374 FSCDVCGRKFARSDEKKRHAKVHLKQR 400
           F C+VC R FAR +  KRH + H  ++
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEK 29



 Score = 29.3 bits (64), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 321 ENCDRRFSRSDELTRHIRIHTGQK 344
           E C R F+R + L RH R HT +K
Sbjct: 6   EVCTRAFARQEHLKRHYRSHTNEK 29


>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           544- 576) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           ++P +C  C +SF +S HL  H R HTGEKP
Sbjct: 10  ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           ERP+ C    C + F +S  L +H RIHTG+KP
Sbjct: 10  ERPHKC--NECGKSFIQSAHLIQHQRIHTGEKP 40


>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
           Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
           Tryptophan Residue In The Zinc Finger Domain
          Length = 95

 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 319 PVENCDRRFSRSDELTRHIRI-HTGQKPFQCRICM--------RSFSRSDHLTTHIRTHT 369
           P ++CDR FS   EL  H+ + H G       +C         +SF     L  HIR HT
Sbjct: 27  PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86

Query: 370 GEK 372
           GEK
Sbjct: 87  GEK 89


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.1 bits (87), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C +C ++FS    L+ H R H+G+KP
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 35.4 bits (80), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C V  C + FS    L+ H RIH+G+KP
Sbjct: 10  EKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVH 396
           EKP+ C VCG+ F+       H ++H
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIH 35


>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 347
          Length = 46

 Score = 37.7 bits (86), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C + F R+ HL  H   HTGEKP
Sbjct: 10  EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40



 Score = 35.8 bits (81), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F R+  L RH  IHTG+KP
Sbjct: 10  EKPYKC--HECGKVFRRNSHLARHQLIHTGEKP 40



 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C  CG+ F R+    RH  +H  ++
Sbjct: 10  EKPYKCHECGKVFRRNSHLARHQLIHTGEK 39


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.7 bits (86), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C + F+++ HL  H R HTG KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40



 Score = 28.9 bits (63), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVH 396
           EKP+ C+ CG+ F ++     H ++H
Sbjct: 10  EKPYKCNECGKVFTQNSHLANHQRIH 35


>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           719- 751) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 37.7 bits (86), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP +CR C +SFS +  L  H R HTGE P
Sbjct: 10  EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40



 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C    C + FS + +L  H RIHTG+ P
Sbjct: 10  EKPHEC--RECGKSFSFNSQLIVHQRIHTGENP 40


>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
           Zinc Finger From The Human Enhancer Binding Protein
           Mbp-1
          Length = 57

 Score = 37.7 bits (86), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRT 367
           Y C  E C  R  +   L +HIR HT  +P+ C  C  SF    +LT H+++
Sbjct: 2   YIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51



 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 361 LTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAK 394
           L  HIRTHT  +P+ C  C   F       +H K
Sbjct: 17  LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50


>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
           Finger Protein 278
          Length = 45

 Score = 37.7 bits (86), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTG 342
           E+PY+CPV  C  RF R D ++ H+R H G
Sbjct: 8   EKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35



 Score = 37.0 bits (84), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTG 370
           +G+KP+ C +C   F R D ++ H+R+H G
Sbjct: 6   SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35



 Score = 36.2 bits (82), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           +GEKP+SC VCG +F R D    H + H
Sbjct: 6   SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33


>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
           Bklf
          Length = 35

 Score = 37.7 bits (86), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 341 TGQKPFQCRI--CMRSFSRSDHLTTHIRTH 368
           TG KPFQC    C RSFSRSDHL  H + H
Sbjct: 3   TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32



 Score = 32.7 bits (73), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIH 340
           +P+ C   +CDR FSRSD L  H + H
Sbjct: 6   KPFQCTWPDCDRSFSRSDHLALHRKRH 32



 Score = 28.9 bits (63), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 369 TGEKPFSCDV--CGRKFARSDEKKRHAKVHL 397
           TG KPF C    C R F+RSD    H K H+
Sbjct: 3   TGIKPFQCTWPDCDRSFSRSDHLALHRKRHM 33


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.4 bits (85), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C + F+++ HL  H R HTG KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 35.8 bits (81), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F+++  L RH R+HTG KP
Sbjct: 10  EKPYKC--NECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVH 396
           EKP+ C+ CG+ F ++    RH +VH
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRRVH 35


>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           581- 609) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 37.4 bits (85), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           +G+KP++C  C ++F     L  H RTHTGE
Sbjct: 6   SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36


>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           204- 236) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 37.4 bits (85), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           KP+QC  C +SFS S  LT H  THT EKP
Sbjct: 11  KPYQCSECGKSFSGSYRLTQHWITHTREKP 40



 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           +PY C    C + FS S  LT+H   HT +KP
Sbjct: 11  KPYQC--SECGKSFSGSYRLTQHWITHTREKP 40


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
           Zinc Finger Protein 32
          Length = 42

 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 375
           +KP++C  C ++FS+   L  HIR HTG  P S
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41



 Score = 35.8 bits (81), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C  + C + FS+   L  HIR+HTG  P
Sbjct: 9   EKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGP 39



 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVH 396
           EKP+ CD CG+ F++      H +VH
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVH 34


>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (699- 729) From Zinc Finger Protein 473
          Length = 44

 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +G+KP  C  C ++F +S  L+ H R H+GEKP
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38



 Score = 32.0 bits (71), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           ++P  C    C + F +S  L++H RIH+G+KP
Sbjct: 8   KKPLVC--NECGKTFRQSSCLSKHQRIHSGEKP 38



 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           +G+KP  C+ CG+ F +S    +H ++H  ++
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37


>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 347
          Length = 46

 Score = 37.0 bits (84), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C ++F    +LTTH   HTGEKP
Sbjct: 10  EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40



 Score = 32.3 bits (72), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F     LT H  IHTG+KP
Sbjct: 10  EKPYKC--NECGKAFRAHSNLTTHQVIHTGEKP 40


>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           641- 673) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 37.0 bits (84), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           T + PF+C  C ++FS S HL+ H   H GE P
Sbjct: 8   TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40



 Score = 31.6 bits (70), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E P+ C    C + FS S  L++H  IH G+ P
Sbjct: 10  EHPFKC--NECGKTFSHSAHLSKHQLIHAGENP 40



 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVHLKQ 399
           T E PF C+ CG+ F+ S    +H  +H  +
Sbjct: 8   TKEHPFKCNECGKTFSHSAHLSKHQLIHAGE 38


>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           564- 596) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.0 bits (84), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C + F+++ HL  H   HTGEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F+++  L RH  IHTG+KP
Sbjct: 10  EKPYKC--NECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C+ CG+ F ++    RH  +H  ++
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIHTGEK 39


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 37.0 bits (84), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C ++FS    LTTH   HTG+KP
Sbjct: 10  EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 34.3 bits (77), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + FS    LT H  IHTG+KP
Sbjct: 10  EKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKP 40


>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
           Zinc Finger Protein 473
          Length = 42

 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           +G+KP+ C+ C ++F++S  L+ H R HTGE
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36



 Score = 32.7 bits (73), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQ 343
           E+PY C  + C + F++S  L+ H R+HTG+
Sbjct: 8   EKPYVC--QECGKAFTQSSCLSIHRRVHTGE 36



 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVHLKQ 399
           +GEKP+ C  CG+ F +S     H +VH  +
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C + F+++ HL  H   HTGEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F+++  L RH  IHTG+KP
Sbjct: 10  EKPYKC--NECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C+ CG+ F ++    RH  +H  ++
Sbjct: 10  EKPYKCNECGKVFTQNSHLVRHRGIHTGEK 39


>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
           Domains Of Zinc Finger Protein 692
          Length = 79

 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 318 CPVENCDRRFSRSDELTRHIRI-HTGQKPFQCR--ICMRSFSRSDHLTTHIRTHTGEKPF 374
           C    C R FS    L  H +  H  QK F C    C +SF+   HL  H++ H+  + +
Sbjct: 10  CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69

Query: 375 SCDVCG 380
            C+  G
Sbjct: 70  ICEFSG 75



 Score = 33.5 bits (75), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 300 RKYPNRPSKTP-VHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI 350
           R+Y N   K   +H++ ++CP   C + F+    L  H+++H+  + + C  
Sbjct: 22  RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73



 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 351 CMRSFSRSDHLTTHIR-THTGEKPFSCD--VCGRKFARSDEKKRHAKVHLKQR 400
           C R FS   +L  H +  H  +K FSC    CG+ F      K H K+H   R
Sbjct: 15  CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67


>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           536- 568) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           KP+ C  C ++FS    LTTH   HTGEKP
Sbjct: 11  KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           +PY C    C + FS    LT H  IHTG+KP
Sbjct: 11  KPYMC--NECGKAFSVYSSLTTHQVIHTGEKP 40


>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
          Length = 29

 Score = 37.0 bits (84), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           KP QC +C ++F+++  L  H+R HTGEK
Sbjct: 1   KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 37.0 bits (84), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           +KP+ C +C ++F  S HL  H+R HT E
Sbjct: 10  EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38



 Score = 36.6 bits (83), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQ 399
           EKP+SC+VCG+ F  S    +H +VH ++
Sbjct: 10  EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38



 Score = 32.3 bits (72), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHT 341
           E+PY+C V  C + F  S  L +H+R+HT
Sbjct: 10  EKPYSCNV--CGKAFVLSAHLNQHLRVHT 36


>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           732- 764) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.0 bits (84), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C + F+++ HL  H   HTGEKP
Sbjct: 10  KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           ++PY C    C + F+++  L RH  IHTG+KP
Sbjct: 10  KKPYKC--NECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 28.1 bits (61), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           +KP+ C+ CG+ F ++    RH  +H  ++
Sbjct: 10  KKPYKCNECGKVFTQNSHLARHRGIHTGEK 39


>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           426- 458) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 36.6 bits (83), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C ++F R  HL  H R HTG +P
Sbjct: 10  EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C  CG+ F R      H ++H   R
Sbjct: 10  EKPYKCSECGKAFHRHTHLNEHRRIHTGYR 39


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 36.6 bits (83), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           ERPY C V  C + F+    L +H +IHTG+KP
Sbjct: 10  ERPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           ++P+ C +C ++F+   +L  H + HTGEKP
Sbjct: 10  ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           E+P+ C VCG+ F       +H K+H  ++
Sbjct: 10  ERPYICTVCGKAFTDRSNLIKHQKIHTGEK 39


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 36.6 bits (83), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C + F  + +L+ H R HTGEKP
Sbjct: 10  EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 35.8 bits (81), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F  +  L+RH RIHTG+KP
Sbjct: 10  EKPYKC--NECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C+ CG+ F  +    RH ++H  ++
Sbjct: 10  EKPYKCNECGKVFRHNSYLSRHQRIHTGEK 39


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 36.6 bits (83), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C ++F+   +L TH + HTGEKP
Sbjct: 10  EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F+    L  H +IHTG+KP
Sbjct: 10  EKPYRCA--ECGKAFTDRSNLFTHQKIHTGEKP 40


>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           628- 660) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 36.6 bits (83), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ++PF+C  C + F R  HL  H+R H+ EK
Sbjct: 10  ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39



 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQRS 401
           E+PF C+ CG+ F R      H ++H +++S
Sbjct: 10  ERPFKCNECGKGFGRRSHLAGHLRLHSREKS 40



 Score = 29.3 bits (64), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           ERP+ C    C + F R   L  H+R+H+ +K
Sbjct: 10  ERPFKC--NECGKGFGRRSHLAGHLRLHSREK 39


>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 36.6 bits (83), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 346 FQCRICMRSFSRSDHLTTHIRTHTGEK 372
           F C +C R+F+R ++L  H R+HT EK
Sbjct: 3   FVCEVCTRAFARQEYLKRHYRSHTNEK 29



 Score = 31.6 bits (70), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 374 FSCDVCGRKFARSDEKKRHAKVHLKQR 400
           F C+VC R FAR +  KRH + H  ++
Sbjct: 3   FVCEVCTRAFARQEYLKRHYRSHTNEK 29



 Score = 28.9 bits (63), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 321 ENCDRRFSRSDELTRHIRIHTGQK 344
           E C R F+R + L RH R HT +K
Sbjct: 6   EVCTRAFARQEYLKRHYRSHTNEK 29


>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           780- 812) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 36.6 bits (83), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           +KP++C+ C ++F +  HL  H R HTGE+
Sbjct: 10  KKPYECKECRKTFIQIGHLNQHKRVHTGER 39


>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           768- 800) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 36.2 bits (82), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 17/30 (56%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           K  QC  C R F+   HL  H R HTGEKP
Sbjct: 11  KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40



 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 323 CDRRFSRSDELTRHIRIHTGQKP 345
           C R F+    L +H RIHTG+KP
Sbjct: 18  CGRGFTLKSHLNQHQRIHTGEKP 40


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 36.2 bits (82), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           T +KP++C  C ++F R+  L  H RTH+GE
Sbjct: 8   TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38



 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           T EKP+ C  CG+ F R+ +   H + H
Sbjct: 8   TREKPYECSECGKAFIRNSQLIVHQRTH 35


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 36.2 bits (82), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C  E C + F    +L  H RIHTG+KP
Sbjct: 10  EKPYNC--EECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 35.8 bits (81), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP+ C  C ++F     L  H R HTGEKP
Sbjct: 10  EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP++C+ CG+ F    + + H ++H  ++
Sbjct: 10  EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39


>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           411- 441) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 36.2 bits (82), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           +KP++C  C ++F+   +L  H RTHTGE
Sbjct: 10  EKPYECNECQKAFNTKSNLMVHQRTHTGE 38


>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           367- 399) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 36.2 bits (82), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP+ C+ C +SF  +  L  H R H+GEKP
Sbjct: 10  EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40



 Score = 32.3 bits (72), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C  + C + F  +  L +H R+H+G+KP
Sbjct: 10  EKPYNC--KECGKSFRWASCLLKHQRVHSGEKP 40


>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 36.2 bits (82), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPF C  C ++FS    L  H R HTGEKP
Sbjct: 10  EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40



 Score = 32.3 bits (72), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C   +C + FS    L +H RIHTG+KP
Sbjct: 10  EKPFDCI--DCGKAFSDHIGLNQHRRIHTGEKP 40


>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           435- 467) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 36.2 bits (82), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C +SF +   L  H R HTGE P
Sbjct: 10  EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 33.1 bits (74), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C   +C + F +  +L  H RIHTG+ P
Sbjct: 10  EKPYEC--SDCGKSFIKKSQLHVHQRIHTGENP 40


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 35.8 bits (81), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           +GQKP+ C  C ++F     L  H R HTGE
Sbjct: 6   SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36



 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQ 343
           ++PY C    C + F    +L  H RIHTG+
Sbjct: 8   QKPYVC--NECGKAFGLKSQLIIHERIHTGE 36



 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           +G+KP+ C+ CG+ F    +   H ++H
Sbjct: 6   SGQKPYVCNECGKAFGLKSQLIIHERIH 33


>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
           Transcriptional Repressor Ctcf Protein
          Length = 77

 Score = 35.8 bits (81), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 338 RIHTGQKPFQCRICMRSFSRSDHLTTHI-RTHTGE-KPFSCDVCGRKFARSDEKKRHAKV 395
           R H+G+KP++C IC   F++S  +  HI + HT     F C  C    AR  +      V
Sbjct: 8   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD----LGV 63

Query: 396 HLKQR 400
           HL+++
Sbjct: 64  HLRKQ 68


>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           312- 344) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 35.8 bits (81), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +K ++C  C + FSR+  L+ H + HTGEKP
Sbjct: 10  EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+ Y C    C + FSR+ +L++H +IHTG+KP
Sbjct: 10  EKRYKC--NECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EK + C+ CG+ F+R+ +  +H K+H  ++
Sbjct: 10  EKRYKCNECGKVFSRNSQLSQHQKIHTGEK 39


>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 224
          Length = 46

 Score = 35.8 bits (81), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +K + C+ C +SFSR+  L  H R H+GEKP
Sbjct: 10  EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40



 Score = 32.0 bits (71), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+ Y C  + C + FSR+  L +H R+H+G+KP
Sbjct: 10  EKLYNC--KECGKSFSRAPCLLKHERLHSGEKP 40


>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
          Length = 30

 Score = 35.8 bits (81), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           +PY C   +C R+F+    L RH+RIHTG+K
Sbjct: 2   KPYVCI--HCQRQFADPGALQRHVRIHTGEK 30



 Score = 33.9 bits (76), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           KP+ C  C R F+    L  H+R HTGEK
Sbjct: 2   KPYVCIHCQRQFADPGALQRHVRIHTGEK 30


>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           724- 756) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 35.8 bits (81), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           Q+P++C  C ++F     L  H R+HTGEKP
Sbjct: 10  QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40



 Score = 28.9 bits (63), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           +RPY C +E C + F     L  H R HTG+KP
Sbjct: 10  QRPYEC-IE-CGKAFKTKSSLICHRRSHTGEKP 40


>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           283- 315) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 35.4 bits (80), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPF+C IC +SF     L  H   HT EKP
Sbjct: 10  EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40



 Score = 35.4 bits (80), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKPF CD+CG+ F       RH+ VH  ++
Sbjct: 10  EKPFKCDICGKSFCGRSRLNRHSMVHTAEK 39



 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C +  C + F     L RH  +HT +KP
Sbjct: 10  EKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKP 40


>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 32
          Length = 41

 Score = 35.4 bits (80), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 375
           +GQ+ ++C+ C +SF +   LT H R HTG  P S
Sbjct: 6   SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           +R Y C  + C + F +   LT H RIHTG  P
Sbjct: 8   QRVYEC--QECGKSFRQKGSLTLHERIHTGSGP 38


>pdb|2AB3|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
           Rna Targeting Zinc Finger Proteins
          Length = 29

 Score = 35.4 bits (80), Expect = 0.068,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTG 342
           Y C  ENC R F+   +L RH +IHTG
Sbjct: 3   YVCHFENCGRSFNDRRKLNRHKKIHTG 29


>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           395- 427) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 35.4 bits (80), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPF+C  C + F  +    +H R+H+GEKP
Sbjct: 10  EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40



 Score = 28.5 bits (62), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+P+ C  E C + F  + +   H R H+G+KP
Sbjct: 10  EKPFKC--EECGKGFYTNSQCYSHQRSHSGEKP 40


>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 35.0 bits (79), Expect = 0.076,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 346 FQCRICMRSFSRSDHLTTHIRTHTGEK 372
           F C +C R+F+R + L  H R+HT EK
Sbjct: 3   FVCEVCTRAFARQEALKRHYRSHTNEK 29



 Score = 32.0 bits (71), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 374 FSCDVCGRKFARSDEKKRHAKVHLKQR 400
           F C+VC R FAR +  KRH + H  ++
Sbjct: 3   FVCEVCTRAFARQEALKRHYRSHTNEK 29



 Score = 29.3 bits (64), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 321 ENCDRRFSRSDELTRHIRIHTGQK 344
           E C R F+R + L RH R HT +K
Sbjct: 6   EVCTRAFARQEALKRHYRSHTNEK 29


>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 46

 Score = 35.0 bits (79), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           KP+ C  C ++FS    L  H R+HTG KP
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40


>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           379- 411) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.0 bits (79), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           K F+C  C ++F+R   L+ H + HTGEKP
Sbjct: 11  KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40



 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 322 NCDRRFSRSDELTRHIRIHTGQKP 345
            C + F+R   L+ H +IHTG+KP
Sbjct: 17  ECGKAFTRKSTLSMHQKIHTGEKP 40


>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           284- 316) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 34.7 bits (78), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           T +KP++C  C ++F    +LTTH   HTGEK
Sbjct: 8   TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39



 Score = 29.3 bits (64), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           E+PY C    C + F     LT H  IHTG+K
Sbjct: 10  EKPYKC--YECGKAFRTRSNLTTHQVIHTGEK 39


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 34.7 bits (78), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +G+KP+ C  C ++F+    L  H   HTG KP
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38



 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           +GEKP+SC+ CG+ F    +   H  VH
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVH 33


>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 3)
 pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
           Factor Sp1f3, Minimized Average Structure
          Length = 29

 Score = 34.7 bits (78), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           K F C  C + F RSDHL+ HI+TH  +K
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNKK 29



 Score = 34.3 bits (77), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           + +ACP   C +RF RSD L++HI+ H  +K
Sbjct: 1   KKFACP--ECPKRFMRSDHLSKHIKTHQNKK 29


>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           368- 400) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 34.3 bits (77), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C ++F     L  H  TH+GEKP
Sbjct: 10  EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40


>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           355- 385) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           + P++C  C + FSR D L +H +TH+G+
Sbjct: 10  ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38



 Score = 32.0 bits (71), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQ 343
           E PY C    C + FSR D+L  H + H+GQ
Sbjct: 10  ENPYECC--ECGKVFSRKDQLVSHQKTHSGQ 38



 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQ 399
           E P+ C  CG+ F+R D+   H K H  Q
Sbjct: 10  ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           ++ ++C  C ++F+R   L  H R HTGEKP
Sbjct: 10  ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           ER Y C    C + F+R   L  H RIHTG+KP
Sbjct: 10  ERHYECS--ECGKAFARKSTLIMHQRIHTGEKP 40


>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
           Fog-1
          Length = 35

 Score = 33.9 bits (76), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHT 369
           +G++PF CRIC+ +F+   +   H++ HT
Sbjct: 3   SGKRPFVCRICLSAFTTKANCARHLKVHT 31


>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
          Length = 29

 Score = 33.9 bits (76), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 345 PFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           P +CR C + F+ S +L  H+R H+GEK
Sbjct: 2   PLKCRECGKQFTTSGNLKRHLRIHSGEK 29



 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 315 PYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           P  C    C ++F+ S  L RH+RIH+G+K
Sbjct: 2   PLKC--RECGKQFTTSGNLKRHLRIHSGEK 29



 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 373 PFSCDVCGRKFARSDEKKRHAKVH 396
           P  C  CG++F  S   KRH ++H
Sbjct: 2   PLKCRECGKQFTTSGNLKRHLRIH 25


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 33.5 bits (75), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
            KP+ C  C ++F    +L  H RTHTGE
Sbjct: 10  MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38


>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           696- 728) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 33.5 bits (75), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F  +   T+H R+HTGQ+P
Sbjct: 10  EKPYKC--MECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 33.1 bits (74), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C ++F  +   T H R HTG++P
Sbjct: 10  EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C  CG+ F  +    +H ++H  QR
Sbjct: 10  EKPYKCMECGKAFGDNSSCTQHQRLHTGQR 39


>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
          Length = 29

 Score = 33.1 bits (74), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQK 344
           +ACP   C +RF RSD LT HI +H  +K
Sbjct: 3   FACP--ECPKRFMRSDHLTLHILLHENKK 29



 Score = 32.0 bits (71), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 346 FQCRICMRSFSRSDHLTTHIRTHTGEK 372
           F C  C + F RSDHLT HI  H  +K
Sbjct: 3   FACPECPKRFMRSDHLTLHILLHENKK 29


>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           626- 654) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 33.1 bits (74), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C  E C  RF     L  H+RIHTG  P
Sbjct: 9   EKPYPC--EICGTRFRHLQTLKSHLRIHTGSGP 39



 Score = 32.0 bits (71), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 375
           +KP+ C IC   F     L +H+R HTG  P S
Sbjct: 9   EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVH 396
           EKP+ C++CG +F      K H ++H
Sbjct: 9   EKPYPCEICGTRFRHLQTLKSHLRIH 34


>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
 pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
          Length = 66

 Score = 33.1 bits (74), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 342 GQKPFQCRICMRSFSRSDHLTTHIRTHTGE--KPFSCDVCGRKFARSDEKKRHAKV 395
           G+  ++C++C R ++   +   H  T      K + C  C ++F R D    H K+
Sbjct: 7   GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62



 Score = 32.7 bits (73), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 313 ERPYACPVENCDRRFSRSDELTRH-IRIHTGQ-KPFQCRICMRSFSRSDHLTTHIR 366
           E  Y C V  C R ++      RH +  H    K + C  C + F+R D++T H++
Sbjct: 8   EHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61


>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
           Zinc Finger Protein 278
          Length = 48

 Score = 33.1 bits (74), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 375
           +K   C IC + F    HL  H  +H+GEKP+S
Sbjct: 10  RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42


>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           659- 691) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 33.1 bits (74), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           +KP++C  C ++F+R   L  H ++HTGE+
Sbjct: 10  EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39


>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           329- 359) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 33.1 bits (74), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +G+K  +C  C ++FS    L  H R HTGE P
Sbjct: 6   SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38


>pdb|2AB7|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
           Rna Targeting Zinc Finger Proteins
          Length = 29

 Score = 33.1 bits (74), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHT 341
           Y C  ENC R F+   +L RH +IHT
Sbjct: 3   YVCHFENCGRSFNDRRKLNRHKKIHT 28


>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
           Zinc Finger Protein
          Length = 28

 Score = 33.1 bits (74), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTG 342
           RPY+C V  C +RFS   ++  H R+HTG
Sbjct: 2   RPYSCSV--CGKRFSLKHQMETHYRVHTG 28



 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 372 KPFSCDVCGRKFARSDEKKRHAKVH 396
           +P+SC VCG++F+   + + H +VH
Sbjct: 2   RPYSCSVCGKRFSLKHQMETHYRVH 26



 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTG 370
           +P+ C +C + FS    + TH R HTG
Sbjct: 2   RPYSCSVCGKRFSLKHQMETHYRVHTG 28


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 33.1 bits (74), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C + ++   +L  H + HTGE+P
Sbjct: 10  EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40



 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C  E C + ++    L  H ++HTG++P
Sbjct: 10  EKPYKC--EKCGKGYNSKFNLDMHQKVHTGERP 40


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 33.1 bits (74), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           +KP++C  C + ++R  +L  H R H GEK
Sbjct: 10  EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           E+PY C  E+C + ++R   L  H R+H G+K
Sbjct: 10  EKPYKC--EDCGKGYNRRLNLDMHQRVHMGEK 39



 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQRS 401
           EKP+ C+ CG+ + R      H +VH+ +++
Sbjct: 10  EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40


>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
           From Human Insulinoma-Associated Protein 1 (Fragment
           424-497), Northeast Structural Genomics Consortium
           Target Hr7614b
          Length = 85

 Score = 32.7 bits (73), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHI 365
           + CPV  C   F+      RH+R+    + F C+ C  +F  S  LT HI
Sbjct: 29  HLCPV--CGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76


>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           598- 626) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 32.7 bits (73), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 375
           +KP++C  C   F +  HL  H+  HTG  P S
Sbjct: 9   EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41



 Score = 31.2 bits (69), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C  E C  RF +   L  H+ IHTG  P
Sbjct: 9   EKPYKC--ETCGARFVQVAHLRAHVLIHTGSGP 39


>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           339- 371) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 32.3 bits (72), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP++C  C + F     L TH   HTGEKP
Sbjct: 10  EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40



 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C  E C + F    +L  H  +HTG+KP
Sbjct: 10  EKPYKC--EECGKGFICRRDLYTHHMVHTGEKP 40


>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           423- 455) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 32.3 bits (72), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           +KP++C  C + + R   L  H R HTGEK
Sbjct: 10  EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39



 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           E+PY C VE C + + R  +L  H R+HTG+K
Sbjct: 10  EKPYKC-VE-CGKGYKRRLDLDFHQRVHTGEK 39


>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           771- 803) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.3 bits (72), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E+PY C    C + F+    L +H +IHT QKP
Sbjct: 10  EKPYIC--AECGKAFTIRSNLIKHQKIHTKQKP 40



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           EKP+ C  CG+ F       +H K+H KQ+
Sbjct: 10  EKPYICAECGKAFTIRSNLIKHQKIHTKQK 39



 Score = 29.3 bits (64), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KP+ C  C ++F+   +L  H + HT +KP
Sbjct: 10  EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40


>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
          Length = 33

 Score = 32.0 bits (71), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)

Query: 316 YACPVENCDRRFSRSDELTRHIRIH 340
           +ACP   C +RF RSD L++HI +H
Sbjct: 3   FACP--ECPKRFMRSDHLSKHITLH 25



 Score = 29.6 bits (65), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 346 FQCRICMRSFSRSDHLTTHIRTH 368
           F C  C + F RSDHL+ HI  H
Sbjct: 3   FACPECPKRFMRSDHLSKHITLH 25


>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           796- 828) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 32.0 bits (71), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +KPFQC+ C  +FS S  L  H+R+H    P
Sbjct: 10  EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40


>pdb|2KFQ|A Chain A, Nmr Structure Of Fp1
          Length = 32

 Score = 32.0 bits (71), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)

Query: 316 YACPVENCDRRFSRSDELTRHIR 338
           +ACP   C +RF RSD L++HI+
Sbjct: 3   FACPA--CPKRFMRSDALSKHIK 23


>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 46

 Score = 32.0 bits (71), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 345 PFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           P++C  C +SFS    L  H R HT EKP
Sbjct: 12  PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.0 bits (71), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           + PF C  C + F+   +L  H + HTGE+P
Sbjct: 10  ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40



 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           E P+ C    C + F+    L  H +IHTG++P
Sbjct: 10  ENPFIC--SECGKVFTHKTNLIIHQKIHTGERP 40



 Score = 28.1 bits (61), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQR 400
           E PF C  CG+ F        H K+H  +R
Sbjct: 10  ENPFICSECGKVFTHKTNLIIHQKIHTGER 39


>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
           Sequence Taken From The Third Zinc Finger Domain Of The
           Human Transcriptional Repressor Protein Yy1 (Ying And
           Yang 1, A Delta Transcription Factor), Nmr, 34
           Structures
          Length = 28

 Score = 31.6 bits (70), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 315 PYACPVENCDRRFSRSDELTRHIRIHTG 342
           P+ C    C +RFS    L  H++IHTG
Sbjct: 1   PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28



 Score = 30.0 bits (66), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 345 PFQCRI--CMRSFSRSDHLTTHIRTHTG 370
           PFQC    C + FS   +L TH++ HTG
Sbjct: 1   PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28


>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
          Length = 30

 Score = 31.6 bits (70), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 372 KPFSCDVCGRKFARSDEKKRHAKVH 396
           KP+ CD CGR F+    K RH + H
Sbjct: 2   KPYQCDYCGRSFSDPTSKMRHLETH 26



 Score = 28.5 bits (62), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           KP+QC  C RSFS       H+ TH  +K
Sbjct: 2   KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30


>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           425- 457) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 31.6 bits (70), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQRS 401
           E+P+ C+ CG+ F R      H K H +++S
Sbjct: 10  ERPYGCNECGKNFGRHSHLIEHLKRHFREKS 40



 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           ++P+ C  C ++F R  HL  H++ H  EK
Sbjct: 10  ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39


>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           519- 551) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 31.6 bits (70), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           +KP++C  C +SF+    L  H + HTGE+
Sbjct: 10  EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39


>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           +K ++CR C   FS++  L  H   H GEKP
Sbjct: 10  EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40


>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 268
          Length = 42

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
           +G+K  +C  C ++FS    L  H R HTGE
Sbjct: 6   SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36


>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           557- 589) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHT 369
           +K F+C  C ++FS S +LT H R HT
Sbjct: 10  EKCFKCNKCEKTFSCSKYLTQHERIHT 36


>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 28 Homolog
          Length = 47

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIR-THTGEKP 373
           +KP++C  C ++F ++  L  H R  HTGEKP
Sbjct: 10  KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41


>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
           Of Zinc Finger Protein 692
          Length = 78

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHT---GEKPFSCDVCGRKFARSDEKKRH 392
           +G    QC IC  +  +   L  H R H        F C+ CG++F + D    H
Sbjct: 3   SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57


>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
           Protein Zfy: 2d Nmr Structure Of An Even Finger And
           Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRT-HTGEK 372
           K +QC+ C + F+ S +L THI+T H+ EK
Sbjct: 1   KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30


>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
          Length = 32

 Score = 30.8 bits (68), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIH 340
           +RPY+C    CD+ F R+ +L RH + H
Sbjct: 1   DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28


>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           484- 512) Of Human Zinc Finger Protein 473
          Length = 42

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHT 369
           +G+KP+ C  C  +FS ++ L  H + HT
Sbjct: 6   SGEKPYSCAECKETFSDNNRLVQHQKMHT 34



 Score = 28.9 bits (63), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAKVH 396
           +GEKP+SC  C   F+ ++   +H K+H
Sbjct: 6   SGEKPYSCAECKETFSDNNRLVQHQKMH 33


>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
 pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
          Length = 170

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 302 YPNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPF---QCRICMRSFSRS 358
           +P+  +K  +      CP E C  +        RH+  H     F    C  C R F + 
Sbjct: 69  FPDNFAKREILSLMVKCPNEGCLHKME-----LRHLEDHQAHCEFALMDCPQCQRPFQKF 123

Query: 359 DHLTTHIRTHTGEKPFSCDVCGRKFARSDEK 389
            H+  HI      +  SCD C    A  D++
Sbjct: 124 -HINIHILKDCPRRQVSCDNCAASMAFEDKE 153


>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           KP++C  C  + +   +L  H+R HTGEK
Sbjct: 8   KPYKCPQCSYASAIKANLNVHLRKHTGEK 36


>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           441- 469) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRTHTG 370
           +G+KP+ C  C ++F+    L  H   HTG
Sbjct: 6   SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35


>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
           Hyperthermophilic Archaeal Virus In The Absence Of Dna
 pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
           Hyperthermophilic Archaeal Virus In The Absence Of Dna
          Length = 129

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 346 FQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHA 393
           F C +C+  FS S  L  HIR    E    C VC ++F  +D    H 
Sbjct: 75  FVCPLCLMPFSSSVSLKQHIR--YTEHTKVCPVCKKEFTSTDSALDHV 120


>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 1)
          Length = 37

 Score = 29.6 bits (65), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 21/35 (60%)

Query: 310 PVHERPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
           P  ++ + C ++ C + + ++  L  H+R HTG++
Sbjct: 3   PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37


>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
           Zinc Finger Protein 473
          Length = 44

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHT 369
           + PF+C  C R F++ ++L  H RTH 
Sbjct: 10  ENPFKCSKCDRVFTQRNYLVQHERTHA 36


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 29.3 bits (64), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 373
           ++ ++C  C ++F +   L+ H R H GEKP
Sbjct: 10  ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 29.3 bits (64), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           ER Y C    C + F +   L+ H RIH G+KP
Sbjct: 10  ERHYECS--ECGKAFIQKSTLSMHQRIHRGEKP 40


>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           341- 373) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.9 bits (63), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 345
           ER + C   +C + F ++    +H RIHTG+KP
Sbjct: 10  ERGHRC--SDCGKFFLQASNFIQHRRIHTGEKP 40


>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
          Length = 26

 Score = 28.9 bits (63), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 314 RPYACPVENCDRRFSRSDELTRHIRIH 340
           +PY C  E C +RF +S +L  HIR H
Sbjct: 1   KPYVC--ERCGKRFVQSSQLANHIRHH 25


>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
           K F C  C + F     L  H+R HT EK
Sbjct: 8   KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36


>pdb|4FQV|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
           Bound To H7 Influenza Hemagglutinin
 pdb|4FQV|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
           Bound To H7 Influenza Hemagglutinin
 pdb|4FQV|E Chain E, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
           Bound To H7 Influenza Hemagglutinin
          Length = 327

 Score = 28.5 bits (62), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 94  ISYRGIFTTTNSSPSHQPGAASSPGNNWMLTGTDKSLFPPL 134
            +Y GI T   +S   + G++      W+L+ TD + FP +
Sbjct: 119 FTYSGIRTNGTTSACRRSGSSFYAEMKWLLSNTDNAAFPQM 159


>pdb|4DJ6|A Chain A, Structure Of The Hemagglutinin From A Highly Pathogenic
           H7n7 Influenza Virus
 pdb|4DJ6|C Chain C, Structure Of The Hemagglutinin From A Highly Pathogenic
           H7n7 Influenza Virus
 pdb|4DJ6|E Chain E, Structure Of The Hemagglutinin From A Highly Pathogenic
           H7n7 Influenza Virus
 pdb|4DJ7|A Chain A, Structure Of The Hemagglutinin Complexed With 3sln From A
           Highly Pathogenic H7n7 Influenza Virus
 pdb|4DJ7|C Chain C, Structure Of The Hemagglutinin Complexed With 3sln From A
           Highly Pathogenic H7n7 Influenza Virus
 pdb|4DJ7|E Chain E, Structure Of The Hemagglutinin Complexed With 3sln From A
           Highly Pathogenic H7n7 Influenza Virus
 pdb|4DJ8|A Chain A, Structure Of The Hemagglutinin Complexed With 6sln From A
           Highly Pathogenic H7n7 Influenza Virus
 pdb|4DJ8|C Chain C, Structure Of The Hemagglutinin Complexed With 6sln From A
           Highly Pathogenic H7n7 Influenza Virus
 pdb|4DJ8|E Chain E, Structure Of The Hemagglutinin Complexed With 6sln From A
           Highly Pathogenic H7n7 Influenza Virus
          Length = 327

 Score = 28.1 bits (61), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 94  ISYRGIFTTTNSSPSHQPGAASSPGNNWMLTGTDKSLFPPL 134
            +Y GI T   +S   + G++      W+L+ TD + FP +
Sbjct: 119 FTYSGIRTNGTTSACRRSGSSFYAEMKWLLSNTDNAAFPQM 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,821,702
Number of Sequences: 62578
Number of extensions: 518421
Number of successful extensions: 1476
Number of sequences better than 100.0: 195
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 530
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)