RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy677
(451 letters)
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 62.9 bits (153), Expect = 8e-14
Identities = 22/28 (78%), Positives = 27/28 (96%)
Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLK 398
EKPF+CD+CGRKFARSDE+KRH K+HL+
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHLR 28
Score = 42.9 bits (101), Expect = 1e-06
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIH 340
E+P+AC + C R+F+RSDE RH +IH
Sbjct: 1 EKPFACDI--CGRKFARSDERKRHTKIH 26
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 59.6 bits (145), Expect = 1e-12
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 339 IHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
IH+G+KP+ C C ++FSRS L H R HTGE
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 45.7 bits (109), Expect = 1e-07
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 368 HTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
H+GEKP+ C CG+ F+RS +H +VH
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 44.1 bits (105), Expect = 4e-07
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTG 342
E+PY C C + FSRS L +H R+HTG
Sbjct: 5 EKPYGCVE--CGKAFSRSSILVQHQRVHTG 32
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 59.4 bits (144), Expect = 2e-12
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 335 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
R ++ ++C C +SFS S L+ H RTHTGE
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 45.5 bits (108), Expect = 1e-07
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 364 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
+ + CD CG+ F+ S + +H + H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 38.6 bits (90), Expect = 4e-05
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTG 342
R Y C + C + FS S +L++H R HTG
Sbjct: 10 RRRYKC--DECGKSFSHSSDLSKHRRTHTG 37
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 59.7 bits (144), Expect = 2e-12
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTH 368
++ Y C C + F+ + RH+ +H G +P+ C +C + F HL H++ H
Sbjct: 1 DKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 51.6 bits (123), Expect = 1e-09
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
K + C+ C +SF+ H+ H G +P+ C VCG+KF H K+H
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 31.2 bits (70), Expect = 0.022
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 304 NRPSKTPVHERPYACPV----ENCDRRFSRSDELTRHIRIH 340
S+ H + C ++F L H++IH
Sbjct: 13 THKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 28.1 bits (62), Expect = 0.27
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVHLKQRSKK 403
+K + C CG+ F ++ RH +HL R
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYG 32
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 59.2 bits (144), Expect = 2e-12
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIR-THTGEKPFSCDV 378
+ KP+ C+ C + FSR DHL HI+ HT E+P C V
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 50.8 bits (122), Expect = 2e-09
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIR-IHTGQKPFQCRI 350
+PY C C + FSR D L HI+ +HT ++P +C++
Sbjct: 3 GKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 33.4 bits (77), Expect = 0.002
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 369 TGEKPFSCDVCGRKFARSDEKKRHAK 394
+ KP+ C CG+ F+R D H K
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIK 26
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 57.8 bits (140), Expect = 6e-12
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 338 RIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
R HTG+KP+ C C ++F + L H + +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 48.1 bits (115), Expect = 1e-08
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 366 RTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
RTHTGEKP++C C + F + H K +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 39.7 bits (93), Expect = 1e-05
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
E+PYAC +CD+ F + L H + +
Sbjct: 6 EKPYAC--SHCDKTFRQKQLLDMHFKRYHDPN 35
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 55.4 bits (134), Expect = 4e-11
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 338 RIHTGQKPFQCRICMRSFSRSDHLTTHI-RTHTGE 371
R H+G+KP++C IC F++S + HI + HT
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 47.3 bits (113), Expect = 2e-08
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 366 RTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
RTH+GEKP+ C +C +F +S K H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 38.0 bits (89), Expect = 5e-05
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHI-RIHTG 342
E+PY C + C RF++S + HI + HT
Sbjct: 6 EKPYECYI--CHARFTQSGTMKMHILQKHTE 34
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 55.1 bits (133), Expect = 5e-11
Identities = 20/35 (57%), Positives = 21/35 (60%)
Query: 336 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTG 370
R TG KPFQC C RSFSRSDHL H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 50.1 bits (120), Expect = 3e-09
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 364 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHL 397
R TG KPF C C R F+RSD H K H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 36.2 bits (84), Expect = 2e-04
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTG 342
+P+ C +CDR FSRSD L H + H
Sbjct: 9 IKPFQC--PDCDRSFSRSDHLALHRKRHML 36
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 54.7 bits (132), Expect = 7e-11
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 348
++CP C + F+ L H+++H+ + + C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 51.3 bits (123), Expect = 1e-09
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 346 FQC--RICMRSFSRSDHLTTHIRTHTGEKPFSCD 377
F C C +SF+ HL H++ H+ + + C+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 24.7 bits (54), Expect = 3.2
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 375 SCDVCGRKFARSDEKKRHAKVH 396
CG+ F K H K+H
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLH 26
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 54.3 bits (131), Expect = 1e-10
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQ 343
+RPY+C CD+ F R+ +L RH + H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 44.2 bits (105), Expect = 3e-07
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 344 KPFQCRI--CMRSFSRSDHLTTHIRTHTGE 371
+P+ C C ++F R+ L H ++H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 36.9 bits (86), Expect = 1e-04
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 371 EKPFSCDV--CGRKFARSDEKKRHAKVHLKQ 399
++P+SCD C + F R+ + RH K H ++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 53.4 bits (129), Expect = 2e-10
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
+ F C +C R+F+R +HL H R+HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 46.5 bits (111), Expect = 4e-08
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
R + C V C R F+R + L RH R HT +K
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 35.3 bits (82), Expect = 4e-04
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 372 KPFSCDVCGRKFARSDEKKRHAKVH 396
+ F C+VC R FAR + KRH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 51.9 bits (125), Expect = 6e-10
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
RP+ C C +RF+RSDEL RH R HTG+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 48.1 bits (115), Expect = 1e-08
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 344 KPFQCRI--CMRSFSRSDHLTTHIRTHTGEK 372
+PF C C + F+RSD L H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.1 bits (71), Expect = 0.013
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 372 KPFSCDV--CGRKFARSDEKKRHAKVH 396
+PF C CG++F RSDE +RH + H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 52.0 bits (125), Expect = 6e-10
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
K F C C + F RSDHL+ HI+TH +K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 43.9 bits (104), Expect = 4e-07
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
+ +ACP C +RF RSD L++HI+ H +K
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTHQNKK 29
Score = 34.6 bits (80), Expect = 7e-04
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 372 KPFSCDVCGRKFARSDEKKRHAKVH 396
K F+C C ++F RSD +H K H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 50.8 bits (122), Expect = 2e-09
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHT 341
RPY CP + C+++F++S L HI H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 43.1 bits (102), Expect = 8e-07
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 344 KPFQCRI--CMRSFSRSDHLTTHIRTHT 369
+P+ C C + F++S +L +HI TH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 35.4 bits (82), Expect = 4e-04
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 372 KPFSCDV--CGRKFARSDEKKRHAKVH 396
+P+ C C +KFA+S K H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 50.4 bits (121), Expect = 2e-09
Identities = 26/29 (89%), Positives = 28/29 (96%)
Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTG 342
RPYACPVE+CDRRFSRS +LTRHIRIHTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 43.8 bits (104), Expect = 4e-07
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 344 KPFQC--RICMRSFSRSDHLTTHIRTHTG 370
+P+ C C R FSRS LT HIR HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 30.8 bits (70), Expect = 0.020
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 372 KPFSCDV--CGRKFARSDEKKRHAKVH 396
+P++C V C R+F+RS + RH ++H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 48.9 bits (117), Expect = 7e-09
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQ 343
+P+ C E C + +SR + L H+R HTG+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 46.2 bits (110), Expect = 7e-08
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 344 KPFQC--RICMRSFSRSDHLTTHIRTHTGE 371
KP +C C +S+SR ++L TH+R+HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 29.6 bits (67), Expect = 0.047
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 372 KPFSCDV--CGRKFARSDEKKRHAKVH 396
KP C C + ++R + K H + H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 48.0 bits (115), Expect = 1e-08
Identities = 27/28 (96%), Positives = 28/28 (100%)
Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTG 370
QKPFQCRICMR+FSRSDHLTTHIRTHTG
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 45.3 bits (108), Expect = 1e-07
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTG 342
++P+ C + C R FSRSD LT HIR HTG
Sbjct: 1 QKPFQCRI--CMRNFSRSDHLTTHIRTHTG 28
Score = 36.8 bits (86), Expect = 1e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVH 396
+KPF C +C R F+RSD H + H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTH 26
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 47.8 bits (114), Expect = 2e-08
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 340 HTGQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
+G++PF CRIC+ +F+ + H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 40.9 bits (96), Expect = 5e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 368 HTGEKPFSCDVCGRKFARSDEKKRHAKVH 396
+G++PF C +C F RH KVH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 38.2 bits (89), Expect = 4e-05
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTG 342
+RP+ C + C F+ RH+++HT
Sbjct: 5 KRPFVCRI--CLSAFTTKANCARHLKVHTD 32
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 47.6 bits (113), Expect = 3e-08
Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 333 LTRHIRIHTGQKPFQCRICM--RSFSRSDHLTTHIRTHTGEK 372
+ ++++ K F+C ++F R ++ +HI+TH ++
Sbjct: 7 IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 42.6 bits (100), Expect = 2e-06
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTGQK 344
++ + C C + F R + HI+ H +
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 36.8 bits (85), Expect = 2e-04
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 360 HLTTHIRTHTGEKPFSCDVC--GRKFARSDEKKRHAKVHLKQR 400
+ +++ +K F C + F R + H + HL+ R
Sbjct: 6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 46.2 bits (110), Expect = 6e-08
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQ 343
+P+ C E C +RFS L H+RIHTG
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 42.7 bits (101), Expect = 9e-07
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 344 KPFQC--RICMRSFSRSDHLTTHIRTHTGE 371
KPFQC C + FS +L TH+R HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 28.1 bits (63), Expect = 0.16
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 372 KPFSCDV--CGRKFARSDEKKRHAKVH 396
KPF C CG++F+ + H ++H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 40.3 bits (95), Expect = 7e-06
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHT 369
KP++C C ++FS++ L H R HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 34.5 bits (80), Expect = 7e-04
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHT 341
+PY C C + FS++ L H RIHT
Sbjct: 1 KPYKC--LECGKAFSQNSGLINHQRIHT 26
Score = 28.3 bits (64), Expect = 0.12
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 372 KPFSCDVCGRKFARSDEKKRHAKVH 396
KP+ C CG+ F+++ H ++H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 36.2 bits (83), Expect = 2e-04
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTG 370
+KP+ C +C F R D ++ H+R+H G
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 28
Score = 35.4 bits (81), Expect = 4e-04
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTG 342
E+PY+CPV C RF R D ++ H+R H G
Sbjct: 1 EKPYSCPV--CGLRFKRKDRMSYHVRSHDG 28
Score = 31.9 bits (72), Expect = 0.007
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 371 EKPFSCDVCGRKFARSDEKKRHAKVH 396
EKP+SC VCG +F R D H + H
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSH 26
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 35.8 bits (82), Expect = 3e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 345 PFQCRICMRSFSRSDHLTTHIRTHTG 370
P +C +C + FSR D L TH+R HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
Score = 32.7 bits (74), Expect = 0.004
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 315 PYACPVENCDRRFSRSDELTRHIRIHTG 342
P+ C V C + FSR D+L H+R HTG
Sbjct: 1 PHKCEV--CGKCFSRKDKLKTHMRCHTG 26
Score = 28.9 bits (64), Expect = 0.084
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 373 PFSCDVCGRKFARSDEKKRHAKVH 396
P C+VCG+ F+R D+ K H + H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCH 24
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 35.6 bits (82), Expect = 4e-04
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 373 PFSCDVCGRKFARSDEKKRHA-KVH 396
P+ C +C R F R D RHA K+H
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIH 25
Score = 32.9 bits (75), Expect = 0.003
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 315 PYACPVENCDRRFSRSDELTRH-IRIHTG 342
PY C + C+R F+R D L RH +IH+G
Sbjct: 1 PYPCGL--CNRAFTRRDLLIRHAQKIHSG 27
Score = 30.9 bits (70), Expect = 0.015
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 345 PFQCRICMRSFSRSDHLTTH-IRTHTG 370
P+ C +C R+F+R D L H + H+G
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIHSG 27
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 32.7 bits (74), Expect = 0.004
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
++PF+C+IC + S LT H+R+HTG+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 25.4 bits (55), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHTG 342
ERP+ C + C S +LT H+R HTG
Sbjct: 1 ERPFKCQI--CPYASRNSSQLTVHLRSHTG 28
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 32.5 bits (74), Expect = 0.004
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIHT 341
++P+ C C +RF+ D L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Score = 26.8 bits (59), Expect = 0.60
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 371 EKPFSCDV--CGRKFARSDEKKRHAKVH 396
+KPF C CG++F D H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 32.3 bits (73), Expect = 0.006
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 375
+K C IC + F HL H +H+GEKP+S
Sbjct: 3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 35
Score = 24.3 bits (52), Expect = 4.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 321 ENCDRRFSRSDELTRHIRIHTGQKPF 346
E C + F L RH H+G+KP+
Sbjct: 9 EICGKIFRDVYHLNRHKLSHSGEKPY 34
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 31.6 bits (71), Expect = 0.010
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 313 ERPYACPVENCDRRFSRSDELTRHIRIH 340
+ PY CP E CD+RFS L RH ++H
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKVH 28
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 31.2 bits (70), Expect = 0.013
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTGQ 343
+P+ C E C++ F+ LTRH HTG+
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
Score = 28.5 bits (63), Expect = 0.13
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 344 KPFQCRI--CMRSFSRSDHLTTHIRTHTGE 371
KPF C+ C + F+ HLT H THTGE
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 31.0 bits (70), Expect = 0.015
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 314 RPYACPVENCDRRFSRSDELTRHIRIHTG 342
+PY C + C +R++ L +H++ G
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 29
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 29.7 bits (67), Expect = 0.046
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEK 372
+ + C C R F + L H+ H ++
Sbjct: 3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 32
Score = 26.2 bits (58), Expect = 0.78
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 372 KPFSCDVCGRKFARSDEKKRHAKVHLKQRSK 402
+ ++C C R+F + H VH + R++
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRDRAR 34
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 30.1 bits (67), Expect = 0.051
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 369 TGEKPFSCDVCGRKFARSDEKKRH 392
TG KP+ C++C ++F D RH
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRH 24
Score = 25.1 bits (54), Expect = 2.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 341 TGQKPFQCRICMRSFSRSDHLTTHIRT 367
TG KP++C IC + F D H+ +
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHVTS 27
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 32.9 bits (74), Expect = 0.081
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 206 SPNNKYQ-WLDSPVEYSASIVQAQPGIIPKQE 236
+ N+++ WL+ VE A A+ G IPK++
Sbjct: 7 TEENRFKAWLE--VEILACEAWAELGDIPKED 36
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 28.9 bits (64), Expect = 0.084
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
++ F C +C +F R L H+ +HTGE
Sbjct: 2 EQVFTCSVCQETFRRRMELRLHMVSHTGE 30
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 32.6 bits (73), Expect = 0.11
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 206 SPNNKYQ-WLDSPVEYSASIVQAQPGIIPKQE 236
+ KY+ WL+ VE + + + G+IPK
Sbjct: 14 TEEAKYRRWLE--VELAVTRAYEELGMIPKGV 43
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 28.5 bits (63), Expect = 0.12
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 347 QCRICMRSFSRSDHLTTHIRTHTGEK 372
+C C + F +L H R HTGEK
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 27.2 bits (60), Expect = 0.41
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 314 RPYACPVENCDRRFSRSDELTRH 336
+PY C E C + FS + + +H
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKH 23
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 26.9 bits (59), Expect = 0.42
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 316 YACPVENCDRRFSRSDELTRHIRI 339
Y CP C + F+R D +T H++I
Sbjct: 2 YPCPF--CFKEFTRKDNMTAHVKI 23
Score = 26.5 bits (58), Expect = 0.49
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 346 FQCRICMRSFSRSDHLTTHIR 366
+ C C + F+R D++T H++
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVK 22
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli
[TaxId: 562]}
Length = 97
Score = 28.6 bits (64), Expect = 0.47
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 363 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH--LKQRSKKESKMAVMMSQQQAQQQQ 420
+ F G F K+ V+ L + AV + +
Sbjct: 22 QEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWA 81
Query: 421 QQNHVHQQQQHHHHHH 436
+ ++ +HHHHHH
Sbjct: 82 RDRKLNGFLEHHHHHH 97
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo
sapiens) [TaxId: 9606]}
Length = 200
Score = 29.7 bits (66), Expect = 0.54
Identities = 5/51 (9%), Positives = 17/51 (33%)
Query: 381 RKFARSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQH 431
+++ + + + L++ S + AQ Q + ++
Sbjct: 108 KQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLR 158
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 28.1 bits (63), Expect = 0.68
Identities = 2/28 (7%), Positives = 10/28 (35%)
Query: 403 KESKMAVMMSQQQAQQQQQQNHVHQQQQ 430
+ ++A + ++ Q ++
Sbjct: 2 RRQRLAELQAKHGDPGDAAQQEAKHREA 29
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.1 bits (57), Expect = 0.72
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 376 CDVCGRKFARSDEKKRHAKVH 396
C CG+ F S + KRH VH
Sbjct: 5 CAECGKAFVESSKLKRHQLVH 25
Score = 25.0 bits (54), Expect = 2.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 323 CDRRFSRSDELTRHIRIHTGQ 343
C + F S +L RH +HTG+
Sbjct: 8 CGKAFVESSKLKRHQLVHTGE 28
Score = 24.6 bits (53), Expect = 3.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 348 CRICMRSFSRSDHLTTHIRTHTGE 371
C C ++F S L H HTGE
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTGE 28
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 26.0 bits (57), Expect = 0.98
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 316 YACPVENCDRRFSRSDELTRHIRIHTGQK 344
Y C C R + L +HIR HT +
Sbjct: 2 YICE--ECGIRAKKPSMLKKHIRTHTDVR 28
Score = 25.6 bits (56), Expect = 1.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 348 CRICMRSFSRSDHLTTHIRTHTGEK 372
C C + L HIRTHT +
Sbjct: 4 CEECGIRAKKPSMLKKHIRTHTDVR 28
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 29.2 bits (64), Expect = 1.00
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 176 CGALKQPSSSYSSCSGEQDV--YARVNQSLMHSPNNKYQWLDSPVEYSASIVQAQPGIIP 233
GA + S G D+ + N + + + QW++ PV + Q ++
Sbjct: 252 AGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSSPQSAVVD 311
Query: 234 KQEPVYGNTNL--SGCGSLVNLSDPNNPGSSY 263
V+G NL G + +L N G+
Sbjct: 312 SNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLM 343
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 25.8 bits (56), Expect = 1.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 316 YACPVENCDRRFSRSDELTRHIRIHT 341
Y C ENC + F + ++L H HT
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHT 27
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.6 bits (63), Expect = 1.7
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 388 EKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQ 430
++ + + + + KM Q +Q++ Q+Q+
Sbjct: 233 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQE 275
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 25.5 bits (56), Expect = 1.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 361 LTTHIRTHTGE 371
L H+R HTGE
Sbjct: 23 LVVHMRRHTGE 33
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.7 bits (53), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 344 KPFQCRICMRSFSRSDHLTTHIRT-HTGEK 372
K +QC+ C + S +L THI+T H+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 36
Score = 24.3 bits (53), Expect = 3.8
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 13/38 (34%)
Query: 343 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCG 380
K C IC + H GE C +C
Sbjct: 3 DKFHLCPIC-------GY------IHKGEDFEKCPICF 27
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 24.3 bits (52), Expect = 4.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 374 FSCDVCGRKFARSDEKKRHAK 394
F C CG+ F R + RHA
Sbjct: 5 FVCSKCGKTFTRRNTMARHAD 25
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 23.9 bits (51), Expect = 4.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 346 FQCRICMRSFSRSDHLTTHIRTH 368
++C +C RSF L+ H R H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
Score = 23.2 bits (49), Expect = 8.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 374 FSCDVCGRKFARSDEKKRHAKVH 396
+ C +C R F RH +VH
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga
maritima [TaxId: 2336]}
Length = 292
Score = 26.8 bits (59), Expect = 5.8
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 5/20 (25%)
Query: 433 HHHHHHPN-----MEGMPVV 447
HHHHHH +G PVV
Sbjct: 3 HHHHHHVIIESRIEKGKPVV 22
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 25.3 bits (55), Expect = 6.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 330 SDELTRHIRIHTGQKPFQCRICMRSF 355
+DE+ + T + F CR+C R F
Sbjct: 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 211
Score = 26.5 bits (57), Expect = 6.2
Identities = 10/54 (18%), Positives = 15/54 (27%)
Query: 383 FARSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHH 436
R E H L S E +AV++S Q + +
Sbjct: 10 LTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAA 63
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 25.6 bits (56), Expect = 7.0
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 352 MRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQRSKKESKMAVMM 411
M+ + + + + F + ++ E+ LK R ++
Sbjct: 59 MKYVTVYNLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEV--RKK 116
Query: 412 SQQQAQQQQQQNHVHQQQQ 430
+++ +Q++ Q Q++Q
Sbjct: 117 LEEKDRQEEAQRL-QQKRQ 134
>d1rhya2 d.14.1.9 (A:94-187) Imidazole glycerol phosphate
dehydratase {Fungus (Filobasidiella neoformans) [TaxId:
5207]}
Length = 94
Score = 25.2 bits (55), Expect = 7.6
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 342 GQKPFQCRICMRSFSRSDHLTTHIRTHTGE 371
++SF+ + +T HI + GE
Sbjct: 42 DLSTEMVSHLLQSFAFAAGVTLHIDSIRGE 71
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.2 bits (49), Expect = 9.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 344 KPFQCRICMRSFSRSDHLTTHIRTHT 369
KP++C+ C + + S L H+R H+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.127 0.381
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,600,888
Number of extensions: 70600
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 138
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)