BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6770
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 228 bits (580), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/169 (68%), Positives = 131/169 (77%), Gaps = 1/169 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
+L + AFIRV GSEFV KYLGEGPRMVRDVFRLA+EN+P TK
Sbjct: 221 MLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATK 280
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTG+DREVQRIL+ELL QMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 281 RFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF 340
Query: 122 P-LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
P L DRR++RL+F TI +KM+L+ E DL+ + R D +SGA I AI QE
Sbjct: 341 PSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 389
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 93/124 (75%), Gaps = 2/124 (1%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRR 258
DR +R++ +T +M+ N++VIMATNRADTLDPALLRPGRLDRKIEFP L DRR
Sbjct: 289 DREVQRILIELLT-QMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRR 347
Query: 259 QKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDF 318
++RL+F TI +KM+L+ E DL+ + R D +SGA I AI QEAG+ AVR+NRY++L D
Sbjct: 348 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDL 407
Query: 319 EKGY 322
E+ Y
Sbjct: 408 EEAY 411
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVFSTITAKMNF 217
+VIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RL+F TI +KM+
Sbjct: 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL 362
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 117/168 (69%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + + F+R+VGSE +QKYLG+GPR+ R +F++A EN+P TK
Sbjct: 231 LLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK 290
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+D+ +G +RE+QR +LELLNQ+DGFD +VKVIMATN+ +TLDPAL+RPGR+DRKI F
Sbjct: 291 RYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILF 350
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PD K+ + T+KMNLS++V+LE V D +SGADI A+C E
Sbjct: 351 ENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTE 398
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VIMATN+ +TLDPAL+RPGR+DRKI F PD K+ + T+KMNLS++V+LE
Sbjct: 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLET 379
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVREN 334
V D +SGADI A+C EAG+ A+RE R V +DF++ ++ + V EN
Sbjct: 380 LVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVM-KNKVEEN 431
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIM 228
+VIMATN+ +TLDPAL+RPGR+DRKI F PD K+ + T+KMN ++ NL+ ++
Sbjct: 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV-NLETLV 381
Query: 229 AT 230
T
Sbjct: 382 TT 383
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 111/175 (63%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + TE FIRVVGSE V+K++GEG +V+D+F+LAKE +P K
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R DA TG DREVQR L++LL +MDGFD +VK+I ATNR D LDPA+LRPGR DR IE
Sbjct: 126 RTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEV 185
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
P PD + + + T KMNL+++V+LE+ + GA++ AIC E M R
Sbjct: 186 PAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + A+M+ G++++I ATNR D LDPA+LRPGR DR IE P PD +
Sbjct: 134 DREVQRTLMQLL-AEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + T KMNL+++V+LE+ + GA++ AIC EAGM+A+RE R V DF
Sbjct: 193 RLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFR 252
Query: 320 KGYKK 324
K +K
Sbjct: 253 KAVEK 257
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 103/158 (65%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKRFDAQTGADREVQ 74
FIRV G+E VQKY+GEG RMVR++F +A+E++P + R + G D EVQ
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R +LELLNQ+DGF+ + N+K+IMATNR D LDPALLRPGR+DRKIEFP P + +
Sbjct: 270 RTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR 329
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
+ KMNL+ ++L + + SGAD+ +C E M
Sbjct: 330 IHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGM 367
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 65/97 (67%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
N+++IMATNR D LDPALLRPGR+DRKIEFP P + + + KMNL+ ++L
Sbjct: 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKV 346
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + SGAD+ +C EAGM+A+RE R V +DFE
Sbjct: 347 AEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFE 383
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 100/171 (58%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + + F+++ + VQ Y+GEG ++VRD F LAKE +P TK
Sbjct: 230 LLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTK 289
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFD++ DREVQR +LELLNQ+DGF VKV+ ATNR D LDPALLR GRLDRKIEF
Sbjct: 290 RFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEF 349
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
PLP + + + KM D+++ ++ D +GA + A+ E M
Sbjct: 350 PLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGM 400
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 61/102 (59%)
Query: 224 LQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYV 283
++V+ ATNR D LDPALLR GRLDRKIEFPLP + + + KM D+++ ++
Sbjct: 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELA 380
Query: 284 ARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
D +GA + A+ EAGM A+R + V +DF +G +
Sbjct: 381 RSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 32/47 (68%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 215
+V+ ATNR D LDPALLR GRLDRKIEFPLP + + + KM
Sbjct: 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM 368
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 96/169 (56%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + + FI S V KY+GE R++R++F AKE+ P +
Sbjct: 230 LLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGR 289
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RF T ADRE+QR L+ELL QMDGFD K+IMATNR DTLDPALLRPGRLDRK+E
Sbjct: 290 RFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEI 349
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEV 170
PLP+ + +F TAK+ + E D E V D +GADI E
Sbjct: 350 PLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEA 398
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + +T +M+ N+G ++IMATNR DTLDPALLRPGRLDRK+E PLP+
Sbjct: 298 DREIQRTLMELLT-QMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ +F TAK+ + E D E V D +GADI EAG A+R++R + P D
Sbjct: 357 RLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLM 416
Query: 320 KGYKKCA 326
K +K A
Sbjct: 417 KAVRKVA 423
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 98/163 (60%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKRFDAQTGADREVQ 74
FIRV+GSE VQKY+GEG RMVR++F +A+ RFD G D EVQ
Sbjct: 271 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQ 330
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R +LEL+ Q+DGFD N+KV+ ATNR +TLDPALLRPGR+DRK+EF LPD + +F
Sbjct: 331 RTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFR 390
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRA 177
+ M++ + E +GA++ ++C E M RA
Sbjct: 391 IHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 433
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 7/110 (6%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
GN++V+ ATNR +TLDPALLRPGR+DRK+EF LPD + +F + M++ + E
Sbjct: 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWEL 406
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK-------GYKK 324
+GA++ ++C EAGM A+R R + KDF K GYKK
Sbjct: 407 ISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 456
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 75/107 (70%), Gaps = 25/107 (23%)
Query: 256 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLP 315
DRRQKRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE+GM AVRENRYIVL
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 316 KDFEKGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
KDFEK YK KKDE EHEFYK
Sbjct: 62 KDFEKAYKTV-------------------------IKKDEQEHEFYK 83
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 47/52 (90%)
Query: 125 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
DRRQKRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE M R
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVR 53
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + E F + GS+FV+ ++G G VRD+F AK ++P
Sbjct: 64 LLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRH 123
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R G E ++ L +LL +MDGFD + V+ ATNR D LDPALLRPGR D+KI
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
PD ++ + T L+++V+LE R GAD+ + E + R
Sbjct: 184 DPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR 238
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 54/95 (56%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR D LDPALLRPGR D+KI PD ++ + T L+++V+LE R
Sbjct: 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKR 216
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
GAD+ + EA + A RE R + KDFE+
Sbjct: 217 TPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI 227
V+ ATNR D LDPALLRPGR D+KI PD ++ + T ++ NL++I
Sbjct: 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV-NLEII 213
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + E F + GS+FV+ ++G G VRD+F AK ++P
Sbjct: 64 LLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRH 123
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R G E ++ L +LL +MDGFD + V+ ATNR D LDPALLRPGR D+KI
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
PD ++ + T L+++V+LE R GAD+ + E + R
Sbjct: 184 DPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR 238
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 54/95 (56%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR D LDPALLRPGR D+KI PD ++ + T L+++V+LE R
Sbjct: 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKR 216
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
GAD+ + EA + A RE R + KDFE+
Sbjct: 217 TPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI 227
V+ ATNR D LDPALLRPGR D+KI PD ++ + T ++ NL++I
Sbjct: 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV-NLEII 213
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + E FI + G E + + GE VR++F A++ +P
Sbjct: 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R R++ ++L +MDG NV +I ATNR D +DPA+LRPGRLD+ I
Sbjct: 586 RGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQ 168
PLPD + + + K ++ +VDLE + SGAD+ ICQ
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
L+ + E F + G E + K GE +R F A++N+P K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R +R RI+ +LL MDG Q +V V+ ATNR +++DPAL R GR DR+++
Sbjct: 313 REKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+PD + + T M L+D+VDLE GAD+ A+C E + R
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 266
V + I +M+ M N+ +I ATNR D +DPA+LRPGRLD+ I PLPD + + +
Sbjct: 600 VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659
Query: 267 ITAKMNLSDEVDLEDYVARPDRISGADINAICQEA 301
K ++ +VDLE + SGAD+ ICQ A
Sbjct: 660 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 204 KRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263
+R + S + M+ + ++ V+ ATNR +++DPAL R GR DR+++ +PD + +
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 264 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRE 308
T M L+D+VDLE GAD+ A+C EA + A+R+
Sbjct: 381 LQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 204
+I ATNR D +DPA+LRPGRLD+ I PLPD + +
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMA 229
V+ ATNR +++DPAL R GR DR+++ +PD + + T M ++ QV
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 230 TNRADTLDPALL 241
T+ D A L
Sbjct: 403 THGHVGADLAAL 414
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + E FI + G E + + GE VR++F A++ +P
Sbjct: 64 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 123
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R R++ ++L +MDG NV +I ATNR D +DPA+LRPGRLD+ I
Sbjct: 124 RGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 183
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQ 168
PLPD + + + K ++ +VDLE + SGAD+ ICQ
Sbjct: 184 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 266
V + I +M+ M N+ +I ATNR D +DPA+LRPGRLD+ I PLPD + + +
Sbjct: 138 VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 197
Query: 267 ITAKMNLSDEVDLEDYVARPDRISGADINAICQEA 301
K ++ +VDLE + SGAD+ ICQ A
Sbjct: 198 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 204
+I ATNR D +DPA+LRPGRLD+ I PLPD + +
Sbjct: 157 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + E FI + G E + + GE VR++F A++ +P
Sbjct: 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R R++ ++L +MDG NV +I ATNR D +DPA+LRPGRLD+ I
Sbjct: 586 RGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQ 168
PLPD + + + K ++ +VDLE + SGAD+ ICQ
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
L+ + E F + G E + K GE +R F A++N+P K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R +R RI+ +LL MDG Q +V V+ ATNR +++DPAL R GR DR+++
Sbjct: 313 REKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+PD + + T M L+D+VDLE GAD+ A+C E + R
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 266
V + I +M+ M N+ +I ATNR D +DPA+LRPGRLD+ I PLPD + + +
Sbjct: 600 VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659
Query: 267 ITAKMNLSDEVDLEDYVARPDRISGADINAICQEA 301
K ++ +VDLE + SGAD+ ICQ A
Sbjct: 660 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 204 KRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263
+R + S + M+ + ++ V+ ATNR +++DPAL R GR DR+++ +PD + +
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 264 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRE 308
T M L+D+VDLE GAD+ A+C EA + A+R+
Sbjct: 381 LQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 204
+I ATNR D +DPA+LRPGRLD+ I PLPD + +
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMA 229
V+ ATNR +++DPAL R GR DR+++ +PD + + T M ++ QV
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 230 TNRADTLDPALL 241
T+ D A L
Sbjct: 403 THGHVGADLAAL 414
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 87/177 (49%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + E F + GS+FV+ ++G G VRD+F AK+ +P +
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R G E ++ L ++L +MDGF+ + VI ATNR D LDPALLRPGR DR++
Sbjct: 120 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 179
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
LPD R + + ++ L+ ++D SGAD+ + E + R +
Sbjct: 180 GLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
+ VI ATNR D LDPALLRPGR DR++ LPD R + + ++ L+ ++D
Sbjct: 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAII 209
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
SGAD+ + EA + A R N+ +V +FEK K
Sbjct: 210 ARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 208
VI ATNR D LDPALLRPGR DR++ LPD R + +
Sbjct: 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQIL 191
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%)
Query: 3 LCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKR 62
L + E FI GS+FV+ ++G G VRD+F AK ++P KR
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 63 FDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 122
G + E ++ L +LL +MDGF++ T + V+ ATNR D LDPALLRPGR DR+I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 123 LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGAD 162
PD + + + L+++VDL R GAD
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 52/97 (53%)
Query: 224 LQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYV 283
+ V+ ATNR D LDPALLRPGR DR+I PD + + + L+++VDL
Sbjct: 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA 238
Query: 284 ARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
R GAD+ + EA + A RE R + KD E+
Sbjct: 239 KRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 275
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 208
V+ ATNR D LDPALLRPGR DR+I PD + + +
Sbjct: 181 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL 219
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%)
Query: 3 LCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKR 62
L + E FI GS+FV+ ++G G VRD+F AK ++P KR
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 63 FDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 122
G + E ++ L +LL +MDGF++ T + V+ ATNR D LDPALLRPGR DR+I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 123 LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGAD 162
PD + + + L+++VDL R GAD
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR D LDPALLRPGR DR+I PD + + + L+++VDL R
Sbjct: 181 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 240
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
GAD+ + EA + A RE R + KD E+
Sbjct: 241 TPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 275
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPD 200
V+ ATNR D LDPALLRPGR DR+I PD
Sbjct: 181 VMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%)
Query: 3 LCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKR 62
L + E FI GS+FV+ ++G G VRD+F AK ++P KR
Sbjct: 65 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124
Query: 63 FDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 122
G + E ++ L +LL +MDGF++ T + V+ ATNR D LDPALLRPGR DR+I
Sbjct: 125 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 184
Query: 123 LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGAD 162
PD + + + L+++VDL R GAD
Sbjct: 185 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR D LDPALLRPGR DR+I PD + + + L+++VDL R
Sbjct: 157 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 216
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
GAD+ + EA + A RE R + KD E+
Sbjct: 217 TPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 251
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 208
V+ ATNR D LDPALLRPGR DR+I PD + + +
Sbjct: 157 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL 195
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%)
Query: 3 LCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKR 62
L + E FI GS+FV+ ++G G VRD+F AK ++P KR
Sbjct: 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
Query: 63 FDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 122
G + E ++ L +LL +MDGF++ T + V+ ATNR D LDPALLRPGR DR+I
Sbjct: 140 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199
Query: 123 LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGAD 162
PD + + + L+++VDL R GAD
Sbjct: 200 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR D LDPALLRPGR DR+I PD + + + L+++VDL R
Sbjct: 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 231
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
GAD+ + EA + A RE R + KD E+
Sbjct: 232 TPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 266
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPD 200
V+ ATNR D LDPALLRPGR DR+I PD
Sbjct: 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPD 202
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 8/180 (4%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + E FI V G E + Y+GE R VR VF+ AK ++P +
Sbjct: 59 LLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR 118
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R D +TGA R++ +LL +MDG + V ++ ATNR D +DPA+LRPGRLD+ +
Sbjct: 119 RSDRETGAS---VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFV 175
Query: 122 PLPDRRQKRLVFSTIT---AKMNLSDEVDLEDYVA--RPDRISGADINAICQEVIMATNR 176
LP + + TIT K L +V+LE R D +GAD++A+ +E + R
Sbjct: 176 GLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALR 235
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT---AKMNLSDEVDLEDY 282
++ ATNR D +DPA+LRPGRLD+ + LP + + TIT K L +V+LE
Sbjct: 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAI 208
Query: 283 VA--RPDRISGADINAICQEAGMHAVRE-----------NRYIVLPKDFEKGYKK 324
R D +GAD++A+ +EA + A+R+ V K FE+ +KK
Sbjct: 209 AGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKK 263
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 154 RPDRISGADINAICQE--------------VIMATNRADTLDPALLRPGRLDRKIEFPLP 199
R DR +GA + + Q ++ ATNR D +DPA+LRPGRLD+ + LP
Sbjct: 119 RSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLP 178
Query: 200 DRRQKRLVFSTIT 212
+ + TIT
Sbjct: 179 PPADRLAILKTIT 191
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 7/180 (3%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + TE F+ + G+EFV+ G G VR +F+ A+ +P K
Sbjct: 54 LLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 113
Query: 62 RFDAQTG-ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 120
R +G ++ E ++ L +LL +MDG T +V V+ +TNRAD LD AL+RPGRLDR +
Sbjct: 114 RSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVF 173
Query: 121 FPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI----SGADINAICQEVIMATNR 176
LP +++R +F + L+ Y R + SGADI IC E + R
Sbjct: 174 IDLPTLQERREIFEQHLKSLKLTQSSTF--YSQRLAELTPGFSGADIANICNEAALHAAR 231
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 214 KMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL 273
+M+ M ++ V+ +TNRAD LD AL+RPGRLDR + LP +++R +F + L
Sbjct: 136 EMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL 195
Query: 274 SDEVDLEDYVARPDRI----SGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ Y R + SGADI IC EA +HA RE V +FE
Sbjct: 196 TQSSTF--YSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFE 243
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 134 STITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRK 193
+T++ N +E L + D + D + I V+ +TNRAD LD AL+RPGRLDR
Sbjct: 116 TTMSGFSNTEEEQTLNQLLVEMDGMGTTD-HVI---VLASTNRADILDGALMRPGRLDRH 171
Query: 194 IEFPLPDRRQKRLVF 208
+ LP +++R +F
Sbjct: 172 VFIDLPTLQERREIF 186
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
L+ + E F + G E + K GE +R F A++N+P K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R +R RI+ +LL MDG Q +V V+ ATNR +++DPAL R GR DR+++
Sbjct: 313 REKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+PD + + T M L+D+VDLE GAD+ A+C E + R
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 204 KRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263
+R + S + M+ + ++ V+ ATNR +++DPAL R GR DR+++ +PD + +
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 264 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRE 308
T M L+D+VDLE GAD+ A+C EA + A+R+
Sbjct: 381 LQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMA 229
V+ ATNR +++DPAL R GR DR+++ +PD + + T M ++ QV
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 230 TNRADTLDPALL 241
T+ D A L
Sbjct: 403 THGHVGADLAAL 414
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
L+ + E F + G E + K GE +R F A++N+P K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R +R RI+ +LL MDG Q +V V+ ATNR +++DPAL R GR DR+++
Sbjct: 313 REKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+PD + + T M L+D+VDLE GAD+ A+C E + R
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 204 KRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263
+R + S + M+ + ++ V+ ATNR +++DPAL R GR DR+++ +PD + +
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 264 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRE 308
T M L+D+VDLE GAD+ A+C EA + A+R+
Sbjct: 381 LQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMA 229
V+ ATNR +++DPAL R GR DR+++ +PD + + T M ++ QV
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 230 TNRADTLDPALL 241
T+ D A L
Sbjct: 403 THGHVGADLAAL 414
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
L+ + E F + G E + K GE +R F A++N+P K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R +R RI+ +LL MDG Q +V V+ ATNR +++DPAL R GR DR+++
Sbjct: 313 REKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+PD + + T M L+D+VDLE GAD+ A+C E + R
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 204 KRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263
+R + S + M+ + ++ V+ ATNR +++DPAL R GR DR+++ +PD + +
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 264 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRE 308
T M L+D+VDLE GAD+ A+C EA + A+R+
Sbjct: 381 LQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMA 229
V+ ATNR +++DPAL R GR DR+++ +PD + + T M ++ QV
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 230 TNRADTLDPALL 241
T+ D A L
Sbjct: 403 THGHVGADLAAL 414
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
L+ + E F + G E + K GE +R F A++N+P K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R +R RI+ +LL MDG Q +V V+ ATNR +++DPAL R GR DR+++
Sbjct: 313 REKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+PD + + T M L+D+VDLE GAD+ A+C E + R
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 204 KRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263
+R + S + M+ + ++ V+ ATNR +++DPAL R GR DR+++ +PD + +
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 264 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRE 308
T M L+D+VDLE GAD+ A+C EA + A+R+
Sbjct: 381 LQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMA 229
V+ ATNR +++DPAL R GR DR+++ +PD + + T M ++ QV
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 230 TNRADTLDPALL 241
T+ D A L
Sbjct: 403 THGHVGADLAAL 414
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + E F + GS F++ ++G G VRD+F AK+ +P
Sbjct: 59 LLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKS 118
Query: 62 RFDAQT-GADREVQRILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKI 119
R + E ++ L +LL +MDGF + V V+ ATNR + LDPAL+RPGR DR++
Sbjct: 119 RAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQV 178
Query: 120 EFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
PD + + + L+++V+L++ ++GAD+ I E + R
Sbjct: 179 LVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR + LDPAL+RPGR DR++ PD + + + L+++V+L++
Sbjct: 154 VLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKL 213
Query: 286 PDRISGADINAICQEAGMHAVRENR 310
++GAD+ I EA + A R N+
Sbjct: 214 TAGLAGADLANIINEAALLAGRNNQ 238
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI-- 227
V+ ATNR + LDPAL+RPGR DR++ PD R+ + K + N NLQ +
Sbjct: 154 VLAATNRPEILDPALMRPGRFDRQVLVDKPD-FNGRVEILKVHIKGVKLANDVNLQEVAK 212
Query: 228 -----MATNRADTLDPALLRPGRLDRK 249
+ A+ ++ A L GR ++K
Sbjct: 213 LTAGLAGADLANIINEAALLAGRNNQK 239
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
L+ ++ F + S K++GEG +MVR +F +A+ P ++
Sbjct: 132 LIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ 191
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTN--VKVIMATNRADTLDPALLRPGRLDRKI 119
R D + + R RI E L Q+DG ++ + V+ ATNR +D A R RL +++
Sbjct: 192 RGDGEHESSR---RIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRL 246
Query: 120 EFPLPD-RRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRA- 177
PLP+ +K++V + ++ + E ++E V + D SGAD+ +C+E + R+
Sbjct: 247 YIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306
Query: 178 DTLDPALLRP 187
T D A + P
Sbjct: 307 QTADIATITP 316
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRR-QKRLVFSTITAKMNLSDEVDLEDYVA 284
V+ ATNR +D A R RL +++ PLP+ +K++V + ++ + E ++E V
Sbjct: 224 VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQ 281
Query: 285 RPDRISGADINAICQEAGMHAVRE----NRYIVLPK--------DFEKGYKKCAGMHAVR 332
+ D SGAD+ +C+EA + +R + + P DFE +A R
Sbjct: 282 QSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFE---------NAFR 332
Query: 333 ENRYIVLPKDFEKGYKNNTK 352
R V PKD E Y+N K
Sbjct: 333 TVRPSVSPKDLEL-YENWNK 351
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 47/64 (73%)
Query: 259 QKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDF 318
++RL+F TI +KM+L+ E DL+ + R D +SGA I AI QEAG+ AVR+NRY++L D
Sbjct: 2 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDL 61
Query: 319 EKGY 322
E+ Y
Sbjct: 62 EEAY 65
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 128 QKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
++RL+F TI +KM+L+ E DL+ + R D +SGA I AI QE
Sbjct: 2 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 43
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 3 LCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKR 62
L + TE + F V S+ V K++GE ++V+ +F +A+EN P R
Sbjct: 100 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 159
Query: 63 FDAQTGADREVQRILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
+ ++ A R RI ELL QM+G + + V V+ ATN LD A+ R R +R+I
Sbjct: 160 GEGESEASR---RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 214
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDL---EDY---VARPDRISGADINAICQEVIM 172
PLPD + +F ++N+ D + EDY A + SG+DI + ++ +M
Sbjct: 215 PLPDLAARTTMF-----EINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 266
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
Query: 218 MLNIGN----LQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL 273
M +GN + V+ ATN LD A+ R R +R+I PLPD + +F ++N+
Sbjct: 178 MNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF-----EINV 230
Query: 274 SDEVDL---EDY---VARPDRISGADINAICQEAGMHAVRE 308
D + EDY A + SG+DI + ++A M +R+
Sbjct: 231 GDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 3 LCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKR 62
L + TE + F V S+ V K++GE ++V+ +F +A+EN P R
Sbjct: 76 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR 135
Query: 63 FDAQTGADREVQRILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
+ ++ A R RI ELL QM+G + + V V+ ATN LD A+ R R +R+I
Sbjct: 136 GEGESEASR---RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 190
Query: 122 PLPDRRQKRLVFSTITAKMNLSDE---VDLEDY---VARPDRISGADINAICQEVIM 172
PLPD + +F ++N+ D + EDY A + SG+DI + ++ +M
Sbjct: 191 PLPDLAARTTMF-----EINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 242
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
Query: 218 MLNIGN----LQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL 273
M +GN + V+ ATN LD A+ R R +R+I PLPD + +F ++N+
Sbjct: 154 MNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF-----EINV 206
Query: 274 SDE---VDLEDY---VARPDRISGADINAICQEAGMHAVRE 308
D + EDY A + SG+DI + ++A M +R+
Sbjct: 207 GDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 3 LCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKR 62
L + TE + F V S+ V K++GE ++V+ +F +A+EN P R
Sbjct: 85 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 144
Query: 63 FDAQTGADREVQRILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
+ ++ A R RI ELL QM+G + + V V+ ATN LD A+ R R +R+I
Sbjct: 145 GEGESEASR---RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 199
Query: 122 PLPDRRQKRLVFSTITAKMNLSDE---VDLEDY---VARPDRISGADINAICQEVIM 172
PLPD + +F ++N+ D + EDY A + SG+DI + ++ +M
Sbjct: 200 PLPDLAARTTMF-----EINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 251
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
Query: 218 MLNIGN----LQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL 273
M +GN + V+ ATN LD A+ R R +R+I PLPD + +F ++N+
Sbjct: 163 MNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF-----EINV 215
Query: 274 SDE---VDLEDY---VARPDRISGADINAICQEAGMHAVRE 308
D + EDY A + SG+DI + ++A M +R+
Sbjct: 216 GDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 3 LCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKR 62
L + TE + F V S+ V K++GE ++V+ +F +A+EN P R
Sbjct: 67 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 126
Query: 63 FDAQTGADREVQRILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
+ ++ A R RI ELL QM+G + + V V+ ATN LD A+ R R +R+I
Sbjct: 127 GEGESEASR---RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 181
Query: 122 PLPDRRQKRLVFSTITAKMNLSDE---VDLEDY---VARPDRISGADINAICQEVIM 172
PLPD + +F ++N+ D + EDY A + SG+DI + ++ +M
Sbjct: 182 PLPDLAARTTMF-----EINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 233
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
Query: 218 MLNIGN----LQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL 273
M +GN + V+ ATN LD A+ R R +R+I PLPD + +F ++N+
Sbjct: 145 MNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF-----EINV 197
Query: 274 SDE---VDLEDY---VARPDRISGADINAICQEAGMHAVRE 308
D + EDY A + SG+DI + ++A M +R+
Sbjct: 198 GDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 7/162 (4%)
Query: 13 TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKRFDAQTGADRE 72
+ F + S+ V K+LGE ++V+++F+LA+EN P R + ++ A R
Sbjct: 194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR- 252
Query: 73 VQRILLELLNQMDGFD-QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 131
RI E L QM G + V+ ATN LD A+ R R +++I PLP+ +
Sbjct: 253 --RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAA 308
Query: 132 VFS-TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
+F + + N E D ++ + D SGADI+ I ++ +M
Sbjct: 309 MFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALM 350
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS-TITAKMNLSDEVDLEDYVA 284
V+ ATN LD A+ R R +++I PLP+ + +F + + N E D ++
Sbjct: 274 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGR 331
Query: 285 RPDRISGADINAICQEAGMHAVRE 308
+ D SGADI+ I ++A M VR+
Sbjct: 332 KTDGYSGADISIIVRDALMQPVRK 355
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 13 TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTKRFDAQTGADRE 72
+ F + S+ V K+LGE ++V+++F+LA+EN P R + ++ A R
Sbjct: 72 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR- 130
Query: 73 VQRILLELLNQMDGFD-QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 131
RI E L QM G + V+ ATN LD A+ R R +++I PLP+ +
Sbjct: 131 --RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAA 186
Query: 132 VFS-TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
+F + N E D + + D SGADI+ I ++ +M
Sbjct: 187 MFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALM 228
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS-TITAKMNLSDEVDLED 281
+ V+ ATN LD A+ R R +++I PLP+ + +F + N E D +
Sbjct: 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRE 206
Query: 282 YVARPDRISGADINAICQEAGMHAVRE 308
+ D SGADI+ I ++A M VR+
Sbjct: 207 LGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
LL + TE F+ + + KY+G+G ++VR +F +A+ P ++
Sbjct: 69 LLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTN---VKVIMATNRADTLDPALLRPGRLDRK 118
R ++ A R R+ E L + DG + + V+ ATNR LD A LR R ++
Sbjct: 129 RSSSEHEASR---RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKR 183
Query: 119 IEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR-PDRISGADINAICQEVIM 172
+ LPD + + L+ + + K + + +A+ D SG+D+ A+ ++ +
Sbjct: 184 VYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAAL 238
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR LD A LR R +++ LPD + + L+ + + K + + +A+
Sbjct: 162 VLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 219
Query: 286 -PDRISGADINAICQEAGMHAVRE 308
D SG+D+ A+ ++A + +RE
Sbjct: 220 ITDGYSGSDLTALAKDAALEPIRE 243
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 8/175 (4%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXXXXXTK 61
+L + E F + + KY+GEG ++VR +F +A+E P +
Sbjct: 163 MLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCE 222
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTN--VKVIMATNRADTLDPALLRPGRLDRKI 119
R + + A R R+ E L + DG + V V+ ATNR LD A+LR R +++
Sbjct: 223 RREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRV 277
Query: 120 EFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA 173
LP+ + L+ + K + +L D SG+D+ A+ ++ +
Sbjct: 278 YVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALG 332
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVA 284
V+ ATNR LD A+LR R +++ LP+ + L+ + K + +L
Sbjct: 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLAR 312
Query: 285 RPDRISGADINAICQEAGMHAVRE 308
D SG+D+ A+ ++A + +RE
Sbjct: 313 MTDGYSGSDLTALAKDAALGPIRE 336
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 255 PDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVL 314
P+ + + + KMNL+ ++L SGA++ +C EAGM+A+RE R V
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 315 PKDFEKGYKK 324
+DFE K
Sbjct: 71 QEDFEMAVAK 80
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 253 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYI 312
P P+ + + + K NL+ ++L SGA++ +C EAG +A+RE R
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 313 VLPKDFEKGYKK 324
V +DFE K
Sbjct: 61 VTQEDFEXAVAK 72
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 254 LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIV 313
LPD + +F + M++ + E +GA++ ++C EAGM A+R R +
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 66
Query: 314 LPKDFEK-------GYKK 324
KDF K GYKK
Sbjct: 67 TEKDFLKAVDKVISGYKK 84
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 290 SGADINAICQEAGMHAVRENRYIVLPKDFEK-------GYKK 324
+GA++ ++C EAG A+R R + KDF K GYKK
Sbjct: 36 TGAELRSVCTEAGXFAIRARRKVATEKDFLKAVDKVISGYKK 77
>pdb|1ALL|A Chain A, Allophycocyanin
Length = 160
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 110 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRIS------GADI 163
L PG LDR F R+ R+ + A+ + + + + RPD +S GAD+
Sbjct: 17 LSPGELDRIKSFVTSGERRVRIAETMTGARERIIKQAGDQLFGKRPDVVSPGGNAYGADM 76
Query: 164 NAIC 167
A C
Sbjct: 77 TATC 80
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRIS------GADI 294
L PG LDR F R+ R+ + A+ + + + + RPD +S GAD+
Sbjct: 17 LSPGELDRIKSFVTSGERRVRIAETMTGARERIIKQAGDQLFGKRPDVVSPGGNAYGADM 76
Query: 295 NAIC 298
A C
Sbjct: 77 TATC 80
>pdb|4AUL|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 230 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 289
TN + + +PG + R I+F Q RL FS + ++N + + E R+
Sbjct: 355 TNYFAETEQVMFQPGHIVRGIDFTEDPLLQGRL-FSYLDTQLNRNGGPNFEQLPINMPRV 413
Query: 290 SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVR 332
+ N AG + N+Y P GY + A +A R
Sbjct: 414 PIHNNNR--DGAGQMFIHRNKYPYTPNTLNSGYPRQANQNAGR 454
>pdb|4AUM|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 230 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 289
TN + + +PG + R I+F Q RL FS + ++N + + E R+
Sbjct: 355 TNYFAETEQVMFQPGHIVRGIDFTEDPLLQGRL-FSYLDTQLNRNGGPNFEQLPINMPRV 413
Query: 290 SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVR 332
+ N AG + N+Y P GY + A +A R
Sbjct: 414 PIHNNNR--DGAGQMFIHRNKYPYTPNTLNSGYPRQANQNAGR 454
>pdb|4AUN|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|E Chain E, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|F Chain F, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|G Chain G, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|H Chain H, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 230 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 289
TN + + +PG + R I+F Q RL FS + ++N + + E R+
Sbjct: 355 TNYFAETEQVMFQPGHIVRGIDFTEDPLLQGRL-FSYLDTQLNRNGGPNFEQLPINMPRV 413
Query: 290 SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVR 332
+ N AG + N+Y P GY + A +A R
Sbjct: 414 PIHNNNR--DGAGQMFIHRNKYPYTPNTLNSGYPRQANQNAGR 454
>pdb|3D79|A Chain A, Crystal Structure Of Hypothetical Protein Ph0734.1 From
Hyperthermophilic Archaea Pyrococcus Horikoshii Ot3
Length = 179
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 127 RQKRLVFSTITAKMNLSDEVDLEDYVAR--------PDRISGADINA 165
R+K L+F + A NLSDE DL + R P ++GAD+ A
Sbjct: 69 RRKDLIFPLVIALYNLSDEEDLRKWPRRVVVDEGAVPHILNGADVMA 115
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 258 RQKRLVFSTITAKMNLSDEVDLEDYVAR--------PDRISGADINA 296
R+K L+F + A NLSDE DL + R P ++GAD+ A
Sbjct: 69 RRKDLIFPLVIALYNLSDEEDLRKWPRRVVVDEGAVPHILNGADVMA 115
>pdb|4AUE|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 717
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 230 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 289
TN + + +PG + R I+F Q RL FS + ++N + + E R+
Sbjct: 353 TNYFAETEQVMFQPGHIVRGIDFTEDPLLQGRL-FSYLDTQLNRNGGPNFEQLPINMPRV 411
Query: 290 SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVR 332
+ N AG + N+Y P GY + A +A R
Sbjct: 412 PIHNNNR--DGAGQMFIHRNKYPYTPNTLNSGYPRQANQNAGR 452
>pdb|4AKX|B Chain B, Structure Of The Heterodimeric Complex Exou-Spcu From The
Type Iii Secretion System (T3ss) Of Pseudomonas
Aeruginosa
Length = 660
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 89 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN--LSDEV 146
Q V VI R + + P+L RPG+ D + L R +++L +T A++N L+D V
Sbjct: 571 QRRKVAVIAENIRKEVIFPSLYRPGQPDSNVA--LLRRAEEQLRHATSPAEINQALNDIV 628
Query: 147 DLEDYVAR 154
D +Y AR
Sbjct: 629 D--NYSAR 634
>pdb|3TU3|B Chain B, 1.92 Angstrom Resolution Crystal Structure Of The
Full-Length Spcu In Complex With Full-Length Exou From
The Type Iii Secretion System Of Pseudomonas Aeruginosa
Length = 711
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 89 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN--LSDEV 146
Q V VI R + + P+L RPG+ D + L R +++L +T A++N L+D V
Sbjct: 622 QRRKVAVIAENIRKEVIFPSLYRPGQPDSNVA--LLRRAEEQLRHATSPAEINQALNDIV 679
Query: 147 DLEDYVAR 154
D +Y AR
Sbjct: 680 D--NYSAR 685
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,647,484
Number of Sequences: 62578
Number of extensions: 365153
Number of successful extensions: 802
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 139
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)