BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6770
(362 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
Length = 415
Score = 314 bits (805), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 154/177 (87%), Positives = 162/177 (91%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK
Sbjct: 211 MLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 270
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 271 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 330
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
PLPDRRQKRL+FSTITAKMNLS+EVDLE++VARPDR+SGADINAICQE M R +
Sbjct: 331 PLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVREN 387
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/163 (66%), Positives = 124/163 (76%), Gaps = 26/163 (15%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + +M+ N++VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 279 DREVQRILLELLN-QMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 337
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRL+FSTITAKMNLS+EVDLE++VARPDR+SGADINAICQEAGM+AVRENRYIVLPKDF
Sbjct: 338 KRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDF- 396
Query: 320 KGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
EKGYKNN KKDESE+EFYK
Sbjct: 397 ------------------------EKGYKNNIKKDESEYEFYK 415
>sp|Q4R7L3|PRS6B_MACFA 26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4
PE=2 SV=1
Length = 418
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 151/177 (85%), Positives = 160/177 (90%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+PAIIFIDEIDAIATK
Sbjct: 214 MLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK 273
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRILLELLNQMDGFDQ NVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 274 RFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
PLPDRRQKRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE M R +
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 390
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 118/163 (72%), Gaps = 26/163 (15%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + F N+ N++VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 282 DREVQRILLELLNQMDGFDQNV-NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 340
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE+GM AVRENRYIVL KDFE
Sbjct: 341 KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 400
Query: 320 KGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
K YK KKDE EHEFYK
Sbjct: 401 KAYKTV-------------------------IKKDEQEHEFYK 418
>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1
SV=2
Length = 418
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 151/177 (85%), Positives = 160/177 (90%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+PAIIFIDEIDAIATK
Sbjct: 214 MLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK 273
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRILLELLNQMDGFDQ NVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 274 RFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
PLPDRRQKRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE M R +
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 390
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 118/163 (72%), Gaps = 26/163 (15%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + F N+ N++VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 282 DREVQRILLELLNQMDGFDQNV-NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 340
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE+GM AVRENRYIVL KDFE
Sbjct: 341 KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 400
Query: 320 KGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
K YK KKDE EHEFYK
Sbjct: 401 KAYKTV-------------------------IKKDEQEHEFYK 418
>sp|Q3T030|PRS6B_BOVIN 26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1
Length = 418
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 151/177 (85%), Positives = 160/177 (90%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+PAIIFIDEIDAIATK
Sbjct: 214 MLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK 273
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRILLELLNQMDGFDQ NVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 274 RFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
PLPDRRQKRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE M R +
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 390
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 118/163 (72%), Gaps = 26/163 (15%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + F N+ N++VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 282 DREVQRILLELLNQMDGFDQNV-NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 340
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE+GM AVRENRYIVL KDFE
Sbjct: 341 KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 400
Query: 320 KGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
K YK KKDE EHEFYK
Sbjct: 401 KAYKTV-------------------------IKKDEQEHEFYK 418
>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4
PE=1 SV=1
Length = 418
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 151/177 (85%), Positives = 160/177 (90%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+PAIIFIDEIDAIATK
Sbjct: 214 MLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK 273
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRILLELLNQMDGFDQ NVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 274 RFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
PLPDRRQKRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE M R +
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 390
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 118/163 (72%), Gaps = 26/163 (15%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + F N+ N++VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 282 DREVQRILLELLNQMDGFDQNV-NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 340
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE+GM AVRENRYIVL KDFE
Sbjct: 341 KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 400
Query: 320 KGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
K YK KKDE EHEFYK
Sbjct: 401 KAYKTV-------------------------IKKDEQEHEFYK 418
>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1
SV=2
Length = 418
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 151/177 (85%), Positives = 160/177 (90%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+PAIIFIDEIDAIATK
Sbjct: 214 MLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK 273
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRILLELLNQMDGFDQ NVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 274 RFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEF 333
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
PLPDRRQKRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE M R +
Sbjct: 334 PLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 390
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 118/163 (72%), Gaps = 26/163 (15%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + F N+ N++VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 282 DREVQRILLELLNQMDGFDQNV-NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 340
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE+GM AVRENRYIVL KDFE
Sbjct: 341 KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 400
Query: 320 KGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
K YK KKDE EHEFYK
Sbjct: 401 KAYKTV-------------------------IKKDEQEHEFYK 418
>sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subunit 6B OS=Caenorhabditis
elegans GN=rpt-3 PE=3 SV=1
Length = 414
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/163 (89%), Positives = 156/163 (95%)
Query: 14 AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREV 73
+FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSP+IIFIDEIDAIATKRFDAQTGADREV
Sbjct: 222 SFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREV 281
Query: 74 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 133
QRILLELLNQMDGFDQ+TNVKVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRLVF
Sbjct: 282 QRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 341
Query: 134 STITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
ST+ ++MNLSD+VDLED+VARPD+ISGADIN+ICQE M R
Sbjct: 342 STVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVR 384
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/163 (59%), Positives = 115/163 (70%), Gaps = 26/163 (15%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + +M+ N++VIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 278 DREVQRILLELLN-QMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQ 336
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRLVFST+ ++MNLSD+VDLED+VARPD+ISGADIN+ICQEAGM AVRENRY+VL K
Sbjct: 337 KRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTK--- 393
Query: 320 KGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
D EK YKN KKD ++ EFYK
Sbjct: 394 ----------------------DLEKAYKNVVKKDTNDFEFYK 414
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 299 bits (765), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/175 (83%), Positives = 154/175 (88%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+PAIIFIDE+DAIAT
Sbjct: 210 MLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATA 269
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRIL+ELLNQMDGFDQT NVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 270 RFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF 329
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
PLPDRRQKRLVF TAKMNLSDEVDLEDYV+RPD+IS A+I AICQE M R
Sbjct: 330 PLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVR 384
Score = 191 bits (484), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 105/124 (84%), Gaps = 1/124 (0%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + F + N++VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 278 DREVQRILMELLNQMDGFDQTV-NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 336
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRLVF TAKMNLSDEVDLEDYV+RPD+IS A+I AICQEAGMHAVR+NRY++LPKDFE
Sbjct: 337 KRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFE 396
Query: 320 KGYK 323
KGY+
Sbjct: 397 KGYR 400
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 298 bits (763), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 145/175 (82%), Positives = 154/175 (88%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+PAIIFIDE+DAIAT
Sbjct: 204 MLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATA 263
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRIL+ELLNQMDGFDQT NVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 264 RFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF 323
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
PLPDRRQKRLVF T+KMNLSDEVDLEDYV+RPD+IS A+I AICQE M R
Sbjct: 324 PLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVR 378
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/163 (59%), Positives = 116/163 (71%), Gaps = 26/163 (15%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + +M+ N++VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 272 DREVQRILMELLN-QMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 330
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRLVF T+KMNLSDEVDLEDYV+RPD+IS A+I AICQEAGMHAVR+NRY++LPKDFE
Sbjct: 331 KRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 390
Query: 320 KGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
KGY+ N KK +++ EFYK
Sbjct: 391 KGYRA-------------------------NVKKPDTDFEFYK 408
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 297 bits (761), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 145/175 (82%), Positives = 153/175 (87%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+PAIIFIDE+DAIAT
Sbjct: 209 MLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATA 268
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRIL+ELLNQMDGFDQT NVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 269 RFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF 328
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
PLPDRRQKRLVF TAKMNL DEVDLEDYV+RPD+IS A+I AICQE M R
Sbjct: 329 PLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVR 383
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/163 (59%), Positives = 114/163 (69%), Gaps = 26/163 (15%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + F + N++VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 277 DREVQRILMELLNQMDGFDQTV-NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 335
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRLVF TAKMNL DEVDLEDYV+RPD+IS A+I AICQEAGMHAVR+NRY++LPKDF
Sbjct: 336 KRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDF- 394
Query: 320 KGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
EKGY+ N KK +++ EFYK
Sbjct: 395 ------------------------EKGYRTNVKKPDTDFEFYK 413
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 296 bits (758), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 142/177 (80%), Positives = 156/177 (88%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRVVGSEFVQKYLGEGPR+VRDVFRLA+ENSPAIIFIDEIDAIATK
Sbjct: 199 MLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATK 258
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRIL+ELLNQMDGFD + NVKVIMATNR DTLDPALLRPGRLDRKIEF
Sbjct: 259 RFDAQTGADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEF 318
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
PLPDRRQKRL+F IT+KMNLSDEVDLEDYV+RPD++SGA+I +ICQE M R +
Sbjct: 319 PLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKN 375
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/124 (70%), Positives = 108/124 (87%), Gaps = 1/124 (0%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + F +++ N++VIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 267 DREVQRILMELLNQMDGFDVSV-NVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQ 325
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRL+F IT+KMNLSDEVDLEDYV+RPD++SGA+I +ICQEAGMHA+R+NRY++LPKDFE
Sbjct: 326 KRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFE 385
Query: 320 KGYK 323
KGYK
Sbjct: 386 KGYK 389
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 269 bits (687), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/177 (72%), Positives = 148/177 (83%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + FIRV GSEFVQKYLGEGPRMVRDVFRLA+E +P+I+FIDE+D+IATK
Sbjct: 183 MLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATK 242
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDA T ADREVQR+L+ELLNQMDGFD NVKVIMATNRADT+DPALLRPGRLDRKIEF
Sbjct: 243 RFDASTSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEF 302
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
PLPDRRQKRLVF+ IT+KM+L+D VD+E V RP++IS ADIN+ICQE M RA
Sbjct: 303 PLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRAS 359
Score = 162 bits (410), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 100/126 (79%), Gaps = 1/126 (0%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + +M+ N++VIMATNRADT+DPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 251 DREVQRVLIELLN-QMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQ 309
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRLVF+ IT+KM+L+D VD+E V RP++IS ADIN+ICQEAGM AVR +RY+V +DFE
Sbjct: 310 KRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFE 369
Query: 320 KGYKKC 325
+ Y K
Sbjct: 370 EAYSKV 375
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 261 bits (666), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 132/169 (78%), Positives = 143/169 (84%), Gaps = 1/169 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + FIRVVGSEFVQKYLGEGPRMVRDVFR+A+EN+PAIIFIDEIDAIATK
Sbjct: 183 MLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATK 242
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRIL+ELL QMDGFDQ NVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 243 RFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEF 302
Query: 122 P-LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
P DRRQ+RLVF TITAKM LS EVDL+ ++ RPD SGA I AI Q+
Sbjct: 303 PSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQD 351
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 94/127 (74%), Gaps = 2/127 (1%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRR 258
DR +R++ +T +M+ N++VIMATNRADTLDPALLRPGRLDRKIEFP DRR
Sbjct: 251 DREVQRILIELLT-QMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRR 309
Query: 259 QKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDF 318
Q+RLVF TITAKM LS EVDL+ ++ RPD SGA I AI Q+AG+ AVR++R ++L D
Sbjct: 310 QRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDI 369
Query: 319 EKGYKKC 325
E+ Y +
Sbjct: 370 EEAYARA 376
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 260 bits (665), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 130/169 (76%), Positives = 147/169 (86%), Gaps = 1/169 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + +FIRV GSEFVQKYLGEGPRMVRDVFR+A+ENSPAIIFIDEIDAIATK
Sbjct: 215 MLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATK 274
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTGADREVQRILLELLNQMDGF+Q++NVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 275 RFDAQTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEF 334
Query: 122 P-LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
P L DRR++RL+FSTI +KM+LS EVDL+ + R + +SGA I AI QE
Sbjct: 335 PSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQE 383
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 94/125 (75%), Gaps = 3/125 (2%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRR 258
DR +R++ + +M+ N++VIMATNRADTLDPALLRPGRLDRKIEFP L DRR
Sbjct: 283 DREVQRILLELLN-QMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRR 341
Query: 259 QKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPK-D 317
++RL+FSTI +KM+LS EVDL+ + R + +SGA I AI QEAG+ AVR+NRY ++P+ D
Sbjct: 342 ERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKNRYNIIPRSD 401
Query: 318 FEKGY 322
E Y
Sbjct: 402 LEDAY 406
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 46/50 (92%), Gaps = 1/50 (2%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVFSTITAKMNF 217
+VIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RL+FSTI +KM+
Sbjct: 307 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMSL 356
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 252 bits (643), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 124/169 (73%), Positives = 143/169 (84%), Gaps = 1/169 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + AFIRV GSEFV KYLGEGPRMVRDVFRLA+EN+P+IIFIDE+D+IATK
Sbjct: 221 MLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATK 280
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFDAQTG+DREVQRIL+ELL QMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEF
Sbjct: 281 RFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF 340
Query: 122 P-LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
P L DRR++RL+F TI +KM+L+ E DL+ + R D +SGA I AI QE
Sbjct: 341 PSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 389
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 93/124 (75%), Gaps = 2/124 (1%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRR 258
DR +R++ +T +M+ N++VIMATNRADTLDPALLRPGRLDRKIEFP L DRR
Sbjct: 289 DREVQRILIELLT-QMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRR 347
Query: 259 QKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDF 318
++RL+F TI +KM+L+ E DL+ + R D +SGA I AI QEAG+ AVR+NRY++L D
Sbjct: 348 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDL 407
Query: 319 EKGY 322
E+ Y
Sbjct: 408 EEAY 411
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVFSTITAKMNF 217
+VIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RL+F TI +KM+
Sbjct: 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL 362
>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium
discoideum GN=psmC1 PE=1 SV=1
Length = 439
Score = 231 bits (590), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 105/168 (62%), Positives = 138/168 (82%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+RVVGSE +QKYLG+GP++VR++FR+A E +P+I+FIDEIDA+ TK
Sbjct: 233 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTK 292
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+D+Q+G +RE+QR +LELLNQ+DGFD T+VKVIMATNR +TLDPAL+RPGR+DRKIEF
Sbjct: 293 RYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEF 352
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PLPD + KR +F TAKMNLS++V+LE++V D +SGADI AIC E
Sbjct: 353 PLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTE 400
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 5/110 (4%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
+++VIMATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F TAKMNLS++V+LE++
Sbjct: 323 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEF 382
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG-----YKKCAG 327
V D +SGADI AIC E+G+ A+RE R V DF+K Y+K AG
Sbjct: 383 VMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYRKTAG 432
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIM 228
+VIMATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F TAKMN ++ + +M
Sbjct: 325 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVM 384
Query: 229 A 229
+
Sbjct: 385 S 385
>sp|O16368|PRS4_CAEEL Probable 26S protease regulatory subunit 4 OS=Caenorhabditis
elegans GN=rpt-2 PE=3 SV=1
Length = 443
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 97/169 (57%), Positives = 135/169 (79%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+R+VGSE +QKYLG+GP+MVR++FR+A+EN+P+I+FIDEIDA+ TK
Sbjct: 237 LLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTK 296
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+D+ +G +RE+QR +LELLNQ+DGFD +VKV+MATNR ++LDPAL+RPGR+DRKIEF
Sbjct: 297 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEF 356
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEV 170
PLPD + KR +F T++M L EV+LE+++ D +SGADI A+C E
Sbjct: 357 PLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEA 405
Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 77/99 (77%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++V+MATNR ++LDPAL+RPGR+DRKIEFPLPD + KR +F T++M L EV+LE+
Sbjct: 326 GDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEE 385
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
++ D +SGADI A+C EAG+ A+RE R V +DF+K
Sbjct: 386 FITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQK 424
>sp|P46466|PRS4_ORYSJ 26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp.
japonica GN=TBP2 PE=2 SV=2
Length = 448
Score = 221 bits (564), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 101/168 (60%), Positives = 133/168 (79%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + F+RVVGSE +QKYLG+GP++VR++FR+A E SP+I+FIDEIDA+ TK
Sbjct: 242 LLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTK 301
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+DA +G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEF
Sbjct: 302 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF 361
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PLPD + +R +F T+KM L+D+V+LE++V D SGADI AIC E
Sbjct: 362 PLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTE 409
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 79/104 (75%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +F T+KM L+D+V+LE+
Sbjct: 331 GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEE 390
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
+V D SGADI AIC EAG+ A+RE R V DF+K +K
Sbjct: 391 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKV 434
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 221 bits (564), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 135/168 (80%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+RVVGSE +QKYLG+GP++VR++FR+A+E++P+I+FIDEIDAI TK
Sbjct: 234 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTK 293
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+D+ +G +RE+QR +LELLNQ+DGFD +VKVIMATNR +TLDPAL+RPGR+DRKIEF
Sbjct: 294 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF 353
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PLPD + K+ +F T++M L+D+V L+D + D +SGADI AIC E
Sbjct: 354 PLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 401
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 81/111 (72%), Gaps = 5/111 (4%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +F T++M L+D+V L+D
Sbjct: 323 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDD 382
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG-----YKKCAG 327
+ D +SGADI AIC EAG+ A+RE R V +DF+K YKK G
Sbjct: 383 LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEG 433
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 221 bits (564), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 135/168 (80%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+RVVGSE +QKYLG+GP++VR++FR+A+E++P+I+FIDEIDAI TK
Sbjct: 234 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTK 293
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+D+ +G +RE+QR +LELLNQ+DGFD +VKVIMATNR +TLDPAL+RPGR+DRKIEF
Sbjct: 294 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF 353
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PLPD + K+ +F T++M L+D+V L+D + D +SGADI AIC E
Sbjct: 354 PLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 401
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 81/111 (72%), Gaps = 5/111 (4%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +F T++M L+D+V L+D
Sbjct: 323 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDD 382
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG-----YKKCAG 327
+ D +SGADI AIC EAG+ A+RE R V +DF+K YKK G
Sbjct: 383 LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEG 433
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 221 bits (564), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 135/168 (80%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+RVVGSE +QKYLG+GP++VR++FR+A+E++P+I+FIDEIDAI TK
Sbjct: 234 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTK 293
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+D+ +G +RE+QR +LELLNQ+DGFD +VKVIMATNR +TLDPAL+RPGR+DRKIEF
Sbjct: 294 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF 353
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PLPD + K+ +F T++M L+D+V L+D + D +SGADI AIC E
Sbjct: 354 PLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 401
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 81/111 (72%), Gaps = 5/111 (4%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +F T++M L+D+V L+D
Sbjct: 323 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDD 382
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG-----YKKCAG 327
+ D +SGADI AIC EAG+ A+RE R V +DF+K YKK G
Sbjct: 383 LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEG 433
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 136/168 (80%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+RVVGSE +QKYLG+GP++VR++FR+A+E++P+I+FIDEIDA+ TK
Sbjct: 233 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 292
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+D+ +G +RE+QR +LELLNQ+DGFD +VKVIMATNR +TLDPAL+RPGR+DRKIEF
Sbjct: 293 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF 352
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PLPD + KR +F+ T++M L+++V+L + + D +SGADI AIC E
Sbjct: 353 PLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTE 400
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 82/111 (73%), Gaps = 5/111 (4%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VIMATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F+ T++M L+++V+L +
Sbjct: 322 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSE 381
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG-----YKKCAG 327
+ D +SGADI AIC EAG+ A+RE R V +DF+K Y+K G
Sbjct: 382 LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEG 432
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 49/63 (77%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIM 228
+VIMATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F+ T++M ++ ++IM
Sbjct: 325 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIM 384
Query: 229 ATN 231
A +
Sbjct: 385 AKD 387
>sp|Q9SZD4|PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis
thaliana GN=RPT2A PE=2 SV=1
Length = 443
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/168 (59%), Positives = 133/168 (79%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + F+RVVGSE +QKYLG+GP++VR++FR+A + SP+I+FIDEIDA+ TK
Sbjct: 237 LLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTK 296
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+DA +G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEF
Sbjct: 297 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF 356
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PLPD + +R +F T+KM LS++V+LE++V D SGADI AIC E
Sbjct: 357 PLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTE 404
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 79/104 (75%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +F T+KM LS++V+LE+
Sbjct: 326 GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEE 385
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
+V D SGADI AIC EAG+ A+RE R V DF+K +K
Sbjct: 386 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKV 429
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIM 228
+VI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +F T+KM ++ + +M
Sbjct: 329 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVM 388
Query: 229 ATNRADTLD 237
+ D
Sbjct: 389 TKDEFSGAD 397
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/168 (58%), Positives = 134/168 (79%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+RVVGSE +QKYLG+GP++VR++FR+A+E+ P+I+FIDEIDAI TK
Sbjct: 234 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTK 293
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+D+ +G +RE+QR +LELLNQ+DGFD +VKVIMATNR +TLDPAL+RPGR+DRKIEF
Sbjct: 294 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF 353
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PLPD + K+ +F T++M L+D+V L++ + D +SGADI AIC E
Sbjct: 354 PLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTE 401
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 81/111 (72%), Gaps = 5/111 (4%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +F T++M L+D+V L++
Sbjct: 323 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDE 382
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG-----YKKCAG 327
+ D +SGADI AIC EAG+ A+RE R V +DF+K YKK G
Sbjct: 383 LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENFLYKKTEG 433
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 48/63 (76%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIM 228
+VIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +F T++M ++ ++IM
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIM 385
Query: 229 ATN 231
A +
Sbjct: 386 AKD 388
>sp|Q9SL67|PRS4B_ARATH 26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis
thaliana GN=RPT2B PE=2 SV=1
Length = 443
Score = 218 bits (555), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 133/168 (79%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + F+RVVGSE +QKYLG+GP++VR++FR+A + SP+I+FIDEIDA+ TK
Sbjct: 237 LLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTK 296
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+DA +G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEF
Sbjct: 297 RYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF 356
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PLPD + +R +F T+KM L+++V+LE++V D SGADI AIC E
Sbjct: 357 PLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTE 404
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 79/104 (75%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +F T+KM L+++V+LE+
Sbjct: 326 GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEE 385
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
+V D SGADI AIC EAG+ A+RE R V DF+K +K
Sbjct: 386 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKV 429
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIM 228
+VI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +F T+KM ++ + +M
Sbjct: 329 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVM 388
Query: 229 ATNRADTLD 237
+ D
Sbjct: 389 TKDEFSGAD 397
>sp|P40327|PRS4_YEAST 26S protease regulatory subunit 4 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT2 PE=1
SV=3
Length = 437
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 128/168 (76%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+R+VGSE +QKYLG+GPR+ R +F++A EN+P+I+FIDEIDAI TK
Sbjct: 231 LLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK 290
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+D+ +G +RE+QR +LELLNQ+DGFD +VKVIMATN+ +TLDPAL+RPGR+DRKI F
Sbjct: 291 RYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILF 350
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
PD K+ + T+KMNLS++V+LE V D +SGADI A+C E
Sbjct: 351 ENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTE 398
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VIMATN+ +TLDPAL+RPGR+DRKI F PD K+ + T+KMNLS++V+LE
Sbjct: 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLET 379
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVREN 334
V D +SGADI A+C EAG+ A+RE R V +DF++ ++ + V EN
Sbjct: 380 LVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVM-KNKVEEN 431
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIM 228
+VIMATN+ +TLDPAL+RPGR+DRKI F PD K+ + T+KMN ++ NL+ ++
Sbjct: 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV-NLETLV 381
Query: 229 AT 230
T
Sbjct: 382 TT 383
>sp|P36612|PRS4_SCHPO 26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mts2 PE=2 SV=1
Length = 448
Score = 204 bits (520), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 130/170 (76%), Gaps = 1/170 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+RVVGSE +QKYLG+GPR+VR +F A+E+SP+I+FIDEIDAI TK
Sbjct: 240 LLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTK 299
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMATNRADTLDPALLRPGRLDRKIE 120
R+DAQ+GA+RE+QR +LELLNQ+DGFD + ++KVIMATNR LDPAL+RPGR+DRKI
Sbjct: 300 RYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKIL 359
Query: 121 FPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEV 170
F PD KR +F+ T+KMNL ++V+LE+ + D +SGA+I AI E
Sbjct: 360 FENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEA 409
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 72/103 (69%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
+++VIMATNR LDPAL+RPGR+DRKI F PD KR +F+ T+KMNL ++V+LE+
Sbjct: 331 DIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEEL 390
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
+ D +SGA+I AI EAG+ A+RE R V+ DF + +K
Sbjct: 391 IQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKV 433
>sp|Q8SRH0|PRS4_ENCCU 26S protease regulatory subunit 4 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT2 PE=1 SV=1
Length = 424
Score = 197 bits (501), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 127/175 (72%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+RVVG+E +Q+YLGEGP++VR++FR+A ++P+IIFIDEIDAI K
Sbjct: 218 LLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVADMHAPSIIFIDEIDAIGGK 277
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R++ +G REVQR +LELLNQ+DGFD ++KVIMATN+ + LDPAL+RPGR+DRKIEF
Sbjct: 278 RYNTSSGGRREVQRTMLELLNQLDGFDTRNDIKVIMATNKIEALDPALIRPGRIDRKIEF 337
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+PD K+ +F T++M L + V++E + + +SGADI AIC E M R
Sbjct: 338 GMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGADIKAICTEAGMIALR 392
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 69/96 (71%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
+++VIMATN+ + LDPAL+RPGR+DRKIEF +PD K+ +F T++M L + V++E
Sbjct: 308 DIKVIMATNKIEALDPALIRPGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELL 367
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDF 318
+ + +SGADI AIC EAGM A+RE R V KDF
Sbjct: 368 ITSKEDLSGADIKAICTEAGMIALRERRKTVTMKDF 403
>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pan PE=1 SV=1
Length = 430
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 123/175 (70%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + TE FIRVVGSE V+K++GEG +V+D+F+LAKE +P+IIFIDEIDAIA K
Sbjct: 219 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 278
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R DA TG DREVQR L++LL +MDGFD +VK+I ATNR D LDPA+LRPGR DR IE
Sbjct: 279 RTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEV 338
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
P PD + + + T KMNL+++V+LE+ + GA++ AIC E M R
Sbjct: 339 PAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 393
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + A+M+ G++++I ATNR D LDPA+LRPGR DR IE P PD +
Sbjct: 287 DREVQRTLMQLL-AEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 345
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + T KMNL+++V+LE+ + GA++ AIC EAGM+A+RE R V DF
Sbjct: 346 RLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFR 405
Query: 320 KGYKK 324
K +K
Sbjct: 406 KAVEK 410
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI 227
++I ATNR D LDPA+LRPGR DR IE P PD + + + T KMN ++ NL+ I
Sbjct: 311 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV-NLEEI 368
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 123/177 (69%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
+L + + +FI++ GSE V K++GEG ++VRD+F +A+EN PA+IFIDEIDAIA+K
Sbjct: 199 MLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVARENEPAVIFIDEIDAIASK 258
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R D++T D EVQR +++LL +MDGFD+ N+++I ATNR D LDPA+LRPGR DR IE
Sbjct: 259 RTDSKTSGDAEVQRTMMQLLAEMDGFDERGNIRIIAATNRFDMLDPAILRPGRFDRLIEV 318
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
P P+ + ++F T KMN+SD+VD + D SGADI A+C E M R D
Sbjct: 319 PKPNEDGREIIFQIHTRKMNVSDDVDFVELAEMADNASGADIKAVCTEAGMFAIRDD 375
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 74/115 (64%)
Query: 211 ITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK 270
+ A+M+ GN+++I ATNR D LDPA+LRPGR DR IE P P+ + ++F T K
Sbjct: 277 LLAEMDGFDERGNIRIIAATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRK 336
Query: 271 MNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
MN+SD+VD + D SGADI A+C EAGM A+R++R + +DF ++K
Sbjct: 337 MNVSDDVDFVELAEMADNASGADIKAVCTEAGMFAIRDDRTEIFMQDFVDAWEKI 391
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 32/47 (68%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 216
+I ATNR D LDPA+LRPGR DR IE P P+ + ++F T KMN
Sbjct: 292 IIAATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMN 338
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 187 bits (476), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 117/171 (68%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E FI++V SEFV+KY+GEG R+VR VF LAKE SP+IIFIDEIDA+A K
Sbjct: 200 LLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAK 259
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R + T DREVQR L++LL ++DGF+ NV ++ ATNR D LDPALLRPGR DR IE
Sbjct: 260 RLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEV 319
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
PLP+ +R + T+ M L++EVD+E D SGAD+ AIC E M
Sbjct: 320 PLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGM 370
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + A+++ + GN+ ++ ATNR D LDPALLRPGR DR IE PLP+
Sbjct: 268 DREVQRTLMQLL-AELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDG 326
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+R + T+ M L++EVD+E D SGAD+ AIC EAGM A+R+ R V DF
Sbjct: 327 RREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADFM 386
Query: 320 KGYKKCAGMHAVRENRY 336
K G+ +E Y
Sbjct: 387 DAVDKIMGVE--KEEEY 401
>sp|Q8SQK0|PRS8_ENCCU 26S protease regulatory subunit 8 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT6 PE=1 SV=1
Length = 453
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 118/162 (72%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FIRV GSE VQKY+GEG R+VR++F +A+E++P+IIF+DEID+I + R D+ G+D EVQ
Sbjct: 258 FIRVSGSELVQKYIGEGSRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQ 317
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R +LELLNQ+DGF+ N+KVIMATNR D LDPALLR GR+DRKIEFP P+ + +
Sbjct: 318 RTMLELLNQLDGFESHNNIKVIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILK 377
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+ KMNL+ +DLE ++ SGA++ A+C E M R
Sbjct: 378 IHSRKMNLTKGIDLETIASKMVGCSGAEVKAVCTEAGMYALR 419
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 68/102 (66%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
N++VIMATNR D LDPALLR GR+DRKIEFP P+ + + + KMNL+ +DLE
Sbjct: 335 NIKVIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETI 394
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
++ SGA++ A+C EAGM+A+RE R V +DFE K
Sbjct: 395 ASKMVGCSGAEVKAVCTEAGMYALRERRVHVTQEDFEMAVHK 436
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 123/177 (69%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + FIRVVGSEFVQKY+GEG R+VR+VF+LAKE +P+IIFIDE+DAIA +
Sbjct: 190 LLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAAR 249
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R ++ T DREVQR +++LL ++DGFD +VKVI ATNR D LDPA+LRPGR DR IE
Sbjct: 250 RTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEV 309
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
PLP + +F T KM L+++VD ++ + SGADI AIC E M R +
Sbjct: 310 PLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREE 366
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 66/104 (63%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VI ATNR D LDPA+LRPGR DR IE PLP + +F T KM L+++VD ++
Sbjct: 279 GDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKE 338
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
+ SGADI AIC EAGM A+RE R V DF K +K
Sbjct: 339 LARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKV 382
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIM 228
+VI ATNR D LDPA+LRPGR DR IE PLP + +F T KM ++ ++
Sbjct: 282 KVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELAR 341
Query: 229 ATNRADTLD 237
T A D
Sbjct: 342 ITEGASGAD 350
>sp|Q0W257|PAN_UNCMA Proteasome-activating nucleotidase OS=Uncultured methanogenic
archaeon RC-I GN=pan PE=3 SV=1
Length = 417
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/184 (51%), Positives = 120/184 (65%), Gaps = 2/184 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + FIR++GSE VQKY+GEG RMVR++F LAKE SP+IIFIDEID+I K
Sbjct: 208 LLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAK 267
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R D+ T DREVQR L++LL +MDGFD NV+++ ATNR D LDPALLRPGR DR I+
Sbjct: 268 RLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKV 327
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMAT--NRADT 179
P+P + + KMNL+D+VDL D SGAD++AI E M N D
Sbjct: 328 PMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDV 387
Query: 180 LDPA 183
+D +
Sbjct: 388 VDSS 391
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 64/106 (60%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
GN++++ ATNR D LDPALLRPGR DR I+ P+P + + KMNL+D+VDL
Sbjct: 297 GNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRK 356
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327
D SGAD++AI EAGM A+R NR +V DF K G
Sbjct: 357 IALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDFNAAVAKVMG 402
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 185 bits (469), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E +F+RVVGSE V+K++GEG ++VRDVF+LAKE SP IIFIDEIDA+A+K
Sbjct: 197 LLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASK 256
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R ++ TG DREVQR L++LL +MDGFD +VK+I ATNR D LDPA+LRPGR DR IE
Sbjct: 257 RTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEI 316
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
+PD + + T KMNL + VDL + + + GAD+ A+C E M R +
Sbjct: 317 SMPDEDGRLEILKIHTEKMNLKN-VDLREVAKLAENMVGADLKAVCTEAGMFAIREE 372
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + A+M+ + G++++I ATNR D LDPA+LRPGR DR IE +PD
Sbjct: 265 DREVQRTLMQLL-AEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDG 323
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + T KMNL + VDL + + + GAD+ A+C EAGM A+RE R + DF+
Sbjct: 324 RLEILKIHTEKMNLKN-VDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFK 382
Query: 320 KGYKKCAG 327
+ K G
Sbjct: 383 EAISKITG 390
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNF 217
++I ATNR D LDPA+LRPGR DR IE +PD + + T KMN
Sbjct: 289 KIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL 337
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 185 bits (469), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E +F+RVVGSE V+K++GEG ++VRDVF+LAKE SP IIFIDEIDA+A+K
Sbjct: 197 LLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASK 256
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R ++ TG DREVQR L++LL +MDGFD +VK+I ATNR D LDPA+LRPGR DR IE
Sbjct: 257 RTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEI 316
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
PD + +F T KMN+ VDL + + + GADI A+C E M
Sbjct: 317 AAPDEDGRLEIFKIHTDKMNIKS-VDLREIAKMAENMVGADIKAVCTEAGM 366
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + A+M+ + G++++I ATNR D LDPA+LRPGR DR IE PD
Sbjct: 265 DREVQRTLMQLL-AEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDG 323
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ +F T KMN+ VDL + + + GADI A+C EAGM A+RE R V KDF+
Sbjct: 324 RLEIFKIHTDKMNIKS-VDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDFK 382
Query: 320 KGYKKCAG 327
+ K G
Sbjct: 383 EALLKVTG 390
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNF 217
++I ATNR D LDPA+LRPGR DR IE PD + +F T KMN
Sbjct: 289 KIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNI 337
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 184 bits (468), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 114/158 (72%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FIRV G+E VQKY+GEG RMVR++F +A+E++P+IIF+DEID+I + R + G D EVQ
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R +LELLNQ+DGF+ + N+K+IMATNR D LDPALLRPGR+DRKIEFP P + +
Sbjct: 270 RTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR 329
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
+ KMNL+ ++L + + SGAD+ +C E M
Sbjct: 330 IHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGM 367
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 65/97 (67%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
N+++IMATNR D LDPALLRPGR+DRKIEFP P + + + KMNL+ ++L
Sbjct: 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKV 346
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + SGAD+ +C EAGM+A+RE R V +DFE
Sbjct: 347 AEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFE 383
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 184 bits (467), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 119/175 (68%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + FIRV GSE VQK++GEG RMVR++F +A+E++P+IIF+DEID+I +
Sbjct: 197 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 256
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R ++ +G D EVQR +LELLNQ+DGF+ T N+KVIMATNR D LDPALLRPGR+DRKIEF
Sbjct: 257 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 316
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
P P+ + + + KMNL+ ++L SGA++ +C E M R
Sbjct: 317 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 371
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 65/103 (63%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
N++VIMATNR D LDPALLRPGR+DRKIEFP P+ + + + KMNL+ ++L
Sbjct: 287 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKI 346
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
SGA++ +C EAGM+A+RE R V +DFE K
Sbjct: 347 AELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 389
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
Length = 402
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 119/175 (68%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + FIRV GSE VQK++GEG RMVR++F +A+E++P+IIF+DEID+I +
Sbjct: 194 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 253
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R ++ +G D EVQR +LELLNQ+DGF+ T N+KVIMATNR D LDPALLRPGR+DRKIEF
Sbjct: 254 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 313
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
P P+ + + + KMNL+ ++L SGA++ +C E M R
Sbjct: 314 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 368
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 65/103 (63%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
N++VIMATNR D LDPALLRPGR+DRKIEFP P+ + + + KMNL+ ++L
Sbjct: 284 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKI 343
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
SGA++ +C EAGM+A+RE R V +DFE K
Sbjct: 344 AELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 386
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E +F+RVVGSE V+K++GEG ++VRDVF+LAKE SP IIFIDEIDA+A+K
Sbjct: 197 LLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASK 256
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R ++ TG DREVQR L++LL +MDGFD +VK+I ATNR D LDPA+LRPGR DR IE
Sbjct: 257 RTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEI 316
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
+PD + + T KMNL VDL + + + GAD+ A+C E M R +
Sbjct: 317 SMPDEDGRLEILKIHTEKMNLKG-VDLREVAKIAENMVGADLKAVCTEAGMFAIREE 372
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + A+M+ + G++++I ATNR D LDPA+LRPGR DR IE +PD
Sbjct: 265 DREVQRTLMQLL-AEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDG 323
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + T KMNL VDL + + + GAD+ A+C EAGM A+RE R + DF
Sbjct: 324 RLEILKIHTEKMNLKG-VDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFR 382
Query: 320 KGYKKCAG 327
+ K G
Sbjct: 383 EAISKITG 390
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNF 217
++I ATNR D LDPA+LRPGR DR IE +PD + + T KMN
Sbjct: 289 KIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL 337
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E +F+RVVGSE V+K++GEG ++VRDVF+LAKE SP IIFIDEIDA+A+K
Sbjct: 197 LLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASK 256
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R ++ TG DREVQR L++LL +MDGFD +VK+I ATNR D LDPA+LRPGR DR IE
Sbjct: 257 RTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEI 316
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
+PD + + T KMNL VDL + + + GAD+ A+C E M R +
Sbjct: 317 SMPDEDGRLDILKIHTEKMNLKG-VDLREVAKLAENMVGADLKAVCTEAGMFAIREE 372
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + A+M+ + G++++I ATNR D LDPA+LRPGR DR IE +PD
Sbjct: 265 DREVQRTLMQLL-AEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDG 323
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + T KMNL VDL + + + GAD+ A+C EAGM A+RE R + DF+
Sbjct: 324 RLDILKIHTEKMNLKG-VDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFK 382
Query: 320 KGYKKCAG 327
+ K G
Sbjct: 383 EAISKITG 390
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNF 217
++I ATNR D LDPA+LRPGR DR IE +PD + + T KMN
Sbjct: 289 KIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL 337
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E +F+RVVGSE V+K++GEG ++VRDVF+LAKE SP IIFIDEIDA+A+K
Sbjct: 197 LLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASK 256
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R ++ TG DREVQR L++LL +MDGFD +VK+I ATNR D LDPA+LRPGR DR IE
Sbjct: 257 RTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEI 316
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
+PD + + T KMNL VDL + + + GAD+ A+C E M R +
Sbjct: 317 SMPDEDGRLDILKIHTEKMNLKG-VDLREVAKIAENMVGADLKAVCTEAGMFAIREE 372
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + A+M+ + G++++I ATNR D LDPA+LRPGR DR IE +PD
Sbjct: 265 DREVQRTLMQLL-AEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDG 323
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + T KMNL VDL + + + GAD+ A+C EAGM A+RE R + DF
Sbjct: 324 RLDILKIHTEKMNLKG-VDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFR 382
Query: 320 KGYKKCAG 327
+ K G
Sbjct: 383 EAITKITG 390
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNF 217
++I ATNR D LDPA+LRPGR DR IE +PD + + T KMN
Sbjct: 289 KIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL 337
>sp|O42586|PR6AB_XENLA 26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-b
PE=2 SV=1
Length = 404
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 120/179 (67%), Gaps = 1/179 (0%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+++ G + VQ ++G+G ++VRD F LAKE +P+IIFIDE+DAI K
Sbjct: 200 LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNK 259
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFD++ DREVQR +LELLNQ+DGF TT VKVI ATNR D LDPALLR GRLDRKIEF
Sbjct: 260 RFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEF 319
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEV-IMATNRADT 179
P+P+ + + + KMN+S +V+ E+ D +GA A+C E I+A R T
Sbjct: 320 PMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGAT 378
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 62/99 (62%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
++VI ATNR D LDPALLR GRLDRKIEFP+P+ + + + KMN+S +V+ E+
Sbjct: 290 QVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEEL 349
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321
D +GA A+C EAG+ A+R + +D+ +G
Sbjct: 350 ARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYMEG 388
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 34/48 (70%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 216
+VI ATNR D LDPALLR GRLDRKIEFP+P+ + + + KMN
Sbjct: 292 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMN 339
>sp|Q63569|PRS6A_RAT 26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3
PE=2 SV=1
Length = 439
Score = 181 bits (460), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 117/175 (66%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+++ G + VQ ++G+G ++VRD F LAKE +P+IIFIDE+DAI TK
Sbjct: 235 LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 294
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFD++ DREVQR +LELLNQ+DGF T VKVI ATNR D LDPALLR GRLDRKIEF
Sbjct: 295 RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 354
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
P+P+ + + + KMN+S +V+ E+ D +GA A+C E M R
Sbjct: 355 PMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 409
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + F N ++VI ATNR D LDPALLR GRLDRKIEFP+P+
Sbjct: 303 DREVQRTMLELLNQLDGFQPNT-QVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 361
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + + KMN+S +V+ E+ D +GA A+C EAGM A+R + +D+
Sbjct: 362 RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 421
Query: 320 KG 321
+G
Sbjct: 422 EG 423
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 34/48 (70%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 216
+VI ATNR D LDPALLR GRLDRKIEFP+P+ + + + KMN
Sbjct: 327 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMN 374
>sp|Q86JA1|PRS7_DICDI 26S protease regulatory subunit 7 OS=Dictyostelium discoideum
GN=psmC2 PE=1 SV=1
Length = 428
Score = 181 bits (460), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 112/165 (67%)
Query: 13 TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADRE 72
AF+RV+GSE VQKY+GEG RMVRD+F++A+ IIF DE+DAI RFD G D E
Sbjct: 230 AAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNE 289
Query: 73 VQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132
VQR +LEL+NQ+DGFD N+KV+MATNR DTLDPALLRPGRLDRK+EF LPD + +
Sbjct: 290 VQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHI 349
Query: 133 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRA 177
F+ M+ + ++ E +GADI ++C E M RA
Sbjct: 350 FTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 394
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 68/109 (62%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
GN++V+MATNR DTLDPALLRPGRLDRK+EF LPD + +F+ M+ + ++ E
Sbjct: 308 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFEL 367
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHA 330
+GADI ++C EAGM A+R R +V KDF + K +A
Sbjct: 368 LARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDKVIKSYA 416
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK 214
+V+MATNR DTLDPALLRPGRLDRK+EF LPD + +F TI AK
Sbjct: 311 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIF-TIHAK 355
>sp|P17980|PRS6A_HUMAN 26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1
SV=3
Length = 439
Score = 181 bits (459), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 117/175 (66%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+++ G + VQ ++G+G ++VRD F LAKE +P+IIFIDE+DAI TK
Sbjct: 235 LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 294
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFD++ DREVQR +LELLNQ+DGF T VKVI ATNR D LDPALLR GRLDRKIEF
Sbjct: 295 RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 354
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
P+P+ + + + KMN+S +V+ E+ D +GA A+C E M R
Sbjct: 355 PMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 409
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + F N ++VI ATNR D LDPALLR GRLDRKIEFP+P+
Sbjct: 303 DREVQRTMLELLNQLDGFQPNT-QVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 361
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + + KMN+S +V+ E+ D +GA A+C EAGM A+R + +D+
Sbjct: 362 RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 421
Query: 320 KG 321
+G
Sbjct: 422 EG 423
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 34/48 (70%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 216
+VI ATNR D LDPALLR GRLDRKIEFP+P+ + + + KMN
Sbjct: 327 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMN 374
>sp|O88685|PRS6A_MOUSE 26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=1
SV=2
Length = 442
Score = 181 bits (459), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 117/175 (66%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + + F+++ G + VQ ++G+G ++VRD F LAKE +P+IIFIDE+DAI TK
Sbjct: 238 LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 297
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFD++ DREVQR +LELLNQ+DGF T VKVI ATNR D LDPALLR GRLDRKIEF
Sbjct: 298 RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 357
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
P+P+ + + + KMN+S +V+ E+ D +GA A+C E M R
Sbjct: 358 PMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 412
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R + + F N ++VI ATNR D LDPALLR GRLDRKIEFP+P+
Sbjct: 306 DREVQRTMLELLNQLDGFQPNT-QVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 364
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
+ + + KMN+S +V+ E+ D +GA A+C EAGM A+R + +D+
Sbjct: 365 RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 424
Query: 320 KG 321
+G
Sbjct: 425 EG 426
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 34/48 (70%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 216
+VI ATNR D LDPALLR GRLDRKIEFP+P+ + + + KMN
Sbjct: 330 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMN 377
>sp|P46465|PRS6A_ORYSJ 26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp.
japonica GN=TBP1 PE=2 SV=2
Length = 429
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 117/178 (65%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
L+ + + F+++ G + VQ ++G+G ++VRD F+LAKE SP IIFIDEIDAI TK
Sbjct: 225 LMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 284
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
RFD++ DREVQR +LELLNQ+DGF +KVI ATNRAD LDPAL+R GRLDRKIEF
Sbjct: 285 RFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEF 344
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRADT 179
P P + + + KMN++ +V+ E+ D +GA + A+C E M R D
Sbjct: 345 PHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA 402
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%)
Query: 224 LQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYV 283
++VI ATNRAD LDPAL+R GRLDRKIEFP P + + + KMN++ +V+ E+
Sbjct: 316 IKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELA 375
Query: 284 ARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVRENRY 336
D +GA + A+C EAGM A+R + V +DF +G + N Y
Sbjct: 376 RSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYY 428
>sp|P62198|PRS8_RAT 26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5
PE=1 SV=1
Length = 406
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 116/171 (67%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + FIRV GSE VQK++GEG RMVR++F +A+E++P+IIF+DEID+I +
Sbjct: 198 LLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSS 257
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R + +G D EVQR +LELLNQ+DGF+ T N+KVIMATNR D LD ALLRPGR+DRKIEF
Sbjct: 258 RLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 317
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
P P+ + + + KMNL+ ++L SGA++ +C E M
Sbjct: 318 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 368
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 64/103 (62%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
N++VIMATNR D LD ALLRPGR+DRKIEFP P+ + + + KMNL+ ++L
Sbjct: 288 NIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKI 347
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
SGA++ +C EAGM+A+RE R V +DFE K
Sbjct: 348 AELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 390
>sp|P62197|PRS8_PIG 26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1
Length = 406
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 116/171 (67%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + FIRV GSE VQK++GEG RMVR++F +A+E++P+IIF+DEID+I +
Sbjct: 198 LLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSS 257
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R + +G D EVQR +LELLNQ+DGF+ T N+KVIMATNR D LD ALLRPGR+DRKIEF
Sbjct: 258 RLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 317
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
P P+ + + + KMNL+ ++L SGA++ +C E M
Sbjct: 318 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 368
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 64/103 (62%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
N++VIMATNR D LD ALLRPGR+DRKIEFP P+ + + + KMNL+ ++L
Sbjct: 288 NIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKI 347
Query: 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325
SGA++ +C EAGM+A+RE R V +DFE K
Sbjct: 348 AELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,282,317
Number of Sequences: 539616
Number of extensions: 5212555
Number of successful extensions: 16102
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 13496
Number of HSP's gapped (non-prelim): 2106
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)