Query psy6770
Match_columns 362
No_of_seqs 286 out of 2417
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 17:58:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 1.7E-71 3.8E-76 531.8 28.0 341 1-344 237-789 (802)
2 KOG0730|consensus 100.0 1E-65 2.2E-70 498.5 27.0 336 1-341 232-691 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 4.7E-52 1E-56 431.6 31.0 342 1-345 226-731 (733)
4 COG1222 RPT1 ATP-dependent 26S 100.0 4.5E-48 9.7E-53 352.4 19.7 197 1-328 199-395 (406)
5 KOG0736|consensus 100.0 4.6E-46 9.9E-51 365.0 25.3 338 1-344 445-952 (953)
6 KOG0734|consensus 100.0 6.5E-46 1.4E-50 351.2 17.9 352 1-359 351-711 (752)
7 COG0464 SpoVK ATPases of the A 100.0 4.2E-41 9E-46 336.2 27.3 329 1-339 32-492 (494)
8 KOG0735|consensus 100.0 1.3E-41 2.8E-46 331.1 22.4 307 1-308 445-888 (952)
9 KOG0738|consensus 100.0 4.1E-42 8.9E-47 315.3 16.6 214 1-345 259-490 (491)
10 KOG0727|consensus 100.0 2.7E-39 5.8E-44 281.9 16.4 206 1-362 203-408 (408)
11 KOG0733|consensus 100.0 1.9E-39 4.1E-44 311.7 16.4 175 1-178 559-737 (802)
12 KOG0730|consensus 100.0 2.4E-39 5.2E-44 314.9 15.5 190 1-194 482-671 (693)
13 KOG0739|consensus 100.0 2.2E-38 4.9E-43 281.8 10.3 210 1-346 180-438 (439)
14 COG0465 HflB ATP-dependent Zn 100.0 1.7E-36 3.6E-41 298.5 13.1 254 1-257 197-450 (596)
15 KOG0726|consensus 100.0 1.3E-36 2.9E-41 269.8 10.9 197 1-328 233-429 (440)
16 KOG0736|consensus 100.0 6E-35 1.3E-39 287.0 16.9 177 1-178 719-899 (953)
17 KOG0728|consensus 100.0 2E-34 4.3E-39 251.2 14.8 179 1-179 195-373 (404)
18 KOG0731|consensus 100.0 5.9E-34 1.3E-38 285.0 16.7 253 1-257 358-612 (774)
19 CHL00195 ycf46 Ycf46; Provisio 100.0 2.6E-32 5.6E-37 268.2 20.6 206 1-342 273-483 (489)
20 KOG0735|consensus 100.0 2E-32 4.2E-37 267.2 16.3 174 1-177 715-888 (952)
21 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.2E-32 1.8E-36 286.5 18.3 120 209-328 1755-1880(2281)
22 KOG0652|consensus 100.0 1.1E-31 2.4E-36 235.4 11.8 179 1-179 219-397 (424)
23 KOG0737|consensus 100.0 2.1E-31 4.6E-36 244.6 12.2 172 1-177 141-314 (386)
24 PTZ00454 26S protease regulato 100.0 2E-30 4.3E-35 249.9 18.4 178 1-178 193-370 (398)
25 COG1223 Predicted ATPase (AAA+ 100.0 1E-30 2.2E-35 229.1 12.8 173 1-177 165-338 (368)
26 COG0464 SpoVK ATPases of the A 100.0 2.1E-30 4.5E-35 259.1 15.8 176 1-179 290-467 (494)
27 KOG0729|consensus 100.0 1.1E-30 2.4E-35 229.7 11.4 177 1-177 225-401 (435)
28 TIGR01241 FtsH_fam ATP-depende 100.0 5.6E-30 1.2E-34 255.6 17.6 178 1-178 102-279 (495)
29 PRK10733 hflB ATP-dependent me 100.0 4.4E-30 9.6E-35 262.3 16.5 192 1-195 199-390 (644)
30 TIGR01243 CDC48 AAA family ATP 100.0 7.7E-30 1.7E-34 265.5 18.2 176 1-178 501-676 (733)
31 CHL00176 ftsH cell division pr 100.0 1.4E-29 3E-34 256.2 16.8 264 1-268 230-497 (638)
32 PRK03992 proteasome-activating 100.0 5.9E-29 1.3E-33 240.5 18.5 192 1-195 179-370 (389)
33 KOG0734|consensus 100.0 4.4E-30 9.5E-35 244.0 9.5 142 207-359 423-564 (752)
34 PTZ00361 26 proteosome regulat 100.0 9.8E-29 2.1E-33 239.6 16.0 178 1-178 231-408 (438)
35 KOG0740|consensus 100.0 4.5E-29 9.8E-34 236.9 11.2 171 1-176 200-373 (428)
36 KOG0651|consensus 100.0 3.3E-29 7.1E-34 224.6 9.2 178 1-178 180-357 (388)
37 PLN00020 ribulose bisphosphate 100.0 7.3E-28 1.6E-32 223.6 15.8 166 1-172 162-349 (413)
38 TIGR03689 pup_AAA proteasome A 100.0 1.4E-26 2.9E-31 227.6 22.5 232 1-326 230-479 (512)
39 TIGR01242 26Sp45 26S proteasom 99.9 5.6E-26 1.2E-30 218.6 17.8 178 1-178 170-347 (364)
40 KOG0741|consensus 99.9 4.4E-27 9.5E-32 223.5 9.2 175 1-176 270-457 (744)
41 KOG0732|consensus 99.9 1.1E-26 2.3E-31 238.6 8.8 305 1-308 313-740 (1080)
42 KOG0731|consensus 99.9 2.2E-26 4.9E-31 230.7 10.7 122 207-328 434-556 (774)
43 COG0465 HflB ATP-dependent Zn 99.9 1.2E-25 2.6E-30 221.9 12.8 202 119-328 187-393 (596)
44 KOG0652|consensus 99.9 8.7E-25 1.9E-29 192.1 8.5 119 210-328 297-415 (424)
45 KOG0729|consensus 99.9 9.3E-25 2E-29 192.4 6.3 119 210-328 303-421 (435)
46 KOG0728|consensus 99.9 3.7E-24 7.9E-29 187.1 8.8 118 208-325 271-388 (404)
47 PTZ00454 26S protease regulato 99.9 9.1E-23 2E-27 196.8 16.0 124 205-328 266-389 (398)
48 PRK10733 hflB ATP-dependent me 99.9 1.4E-22 3.1E-27 207.3 14.8 125 204-328 271-395 (644)
49 KOG0741|consensus 99.9 1.1E-23 2.5E-28 200.4 5.3 124 207-330 353-495 (744)
50 TIGR01241 FtsH_fam ATP-depende 99.9 6.8E-22 1.5E-26 197.5 15.0 202 118-327 91-297 (495)
51 PRK03992 proteasome-activating 99.9 1.9E-21 4.2E-26 188.2 13.7 124 206-329 253-376 (389)
52 KOG0737|consensus 99.9 4.7E-21 1E-25 176.6 14.4 141 202-344 208-381 (386)
53 PTZ00361 26 proteosome regulat 99.9 2.5E-21 5.4E-26 188.0 12.6 123 206-328 305-427 (438)
54 COG1223 Predicted ATPase (AAA+ 99.8 1.2E-20 2.6E-25 166.0 9.5 121 207-329 238-359 (368)
55 CHL00176 ftsH cell division pr 99.8 8.4E-20 1.8E-24 185.2 16.7 123 204-326 302-424 (638)
56 TIGR01242 26Sp45 26S proteasom 99.8 2.1E-19 4.6E-24 173.0 13.7 120 206-325 244-363 (364)
57 COG1222 RPT1 ATP-dependent 26S 99.8 1E-19 2.2E-24 167.1 10.2 90 89-178 287-376 (406)
58 KOG0651|consensus 99.8 9.6E-20 2.1E-24 164.0 5.1 120 209-328 257-376 (388)
59 KOG0740|consensus 99.8 1.4E-18 3E-23 165.6 10.2 191 145-344 216-424 (428)
60 KOG0732|consensus 99.7 2.5E-18 5.5E-23 177.4 9.5 123 207-329 390-529 (1080)
61 PF00004 AAA: ATPase family as 99.7 5.7E-17 1.2E-21 132.8 11.3 119 1-123 12-132 (132)
62 KOG0744|consensus 99.7 2.4E-17 5.2E-22 149.3 7.7 172 1-174 191-396 (423)
63 PRK11034 clpA ATP-dependent Cl 99.6 9.7E-15 2.1E-19 151.0 19.6 159 1-171 221-406 (758)
64 KOG0742|consensus 99.6 4E-15 8.7E-20 138.7 12.8 164 1-171 398-589 (630)
65 TIGR03689 pup_AAA proteasome A 99.6 2.4E-15 5.1E-20 148.5 12.0 95 205-305 315-410 (512)
66 TIGR02639 ClpA ATP-dependent C 99.6 1.2E-14 2.7E-19 151.5 18.1 127 1-139 217-360 (731)
67 KOG0738|consensus 99.6 6.6E-16 1.4E-20 143.1 7.4 104 72-177 331-435 (491)
68 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.5E-15 3.3E-20 163.6 9.9 169 1-178 1644-1861(2281)
69 PLN00020 ribulose bisphosphate 99.6 5.6E-14 1.2E-18 131.4 13.9 184 119-307 151-353 (413)
70 KOG0743|consensus 99.5 6.5E-14 1.4E-18 133.0 10.5 158 1-167 249-413 (457)
71 CHL00195 ycf46 Ycf46; Provisio 99.5 1.5E-13 3.3E-18 135.7 11.1 101 72-177 345-447 (489)
72 KOG0727|consensus 99.4 6E-13 1.3E-17 117.2 7.3 106 70-179 276-381 (408)
73 KOG0726|consensus 99.3 8.2E-13 1.8E-17 118.6 4.3 102 73-178 309-410 (440)
74 CHL00181 cbbX CbbX; Provisiona 99.3 1.7E-11 3.6E-16 114.0 12.6 161 1-173 73-253 (287)
75 TIGR02881 spore_V_K stage V sp 99.3 8E-11 1.7E-15 108.3 14.5 160 1-173 56-237 (261)
76 TIGR02880 cbbX_cfxQ probable R 99.2 8.6E-11 1.9E-15 109.2 12.0 161 1-173 72-252 (284)
77 KOG0739|consensus 99.2 2.2E-12 4.7E-17 116.2 0.0 87 89-177 266-353 (439)
78 KOG0742|consensus 99.1 2.2E-10 4.7E-15 107.4 9.5 80 221-302 483-589 (630)
79 TIGR00763 lon ATP-dependent pr 99.1 5.2E-10 1.1E-14 117.7 12.7 126 1-137 361-505 (775)
80 KOG0743|consensus 99.1 2.7E-10 5.8E-15 108.7 7.5 88 207-296 320-411 (457)
81 PRK10865 protein disaggregatio 99.0 1.2E-09 2.6E-14 115.6 10.7 127 1-140 213-357 (857)
82 TIGR03345 VI_ClpV1 type VI sec 99.0 1.9E-09 4E-14 114.0 9.7 127 1-140 222-366 (852)
83 TIGR03346 chaperone_ClpB ATP-d 98.9 4.9E-09 1.1E-13 111.4 11.2 129 1-142 208-354 (852)
84 CHL00095 clpC Clp protease ATP 98.9 8.8E-09 1.9E-13 109.1 9.9 124 1-137 214-354 (821)
85 PRK00080 ruvB Holliday junctio 98.7 2.1E-07 4.5E-12 88.6 12.4 150 1-172 65-228 (328)
86 TIGR00635 ruvB Holliday juncti 98.6 4.6E-07 1E-11 85.2 12.2 150 1-172 44-207 (305)
87 TIGR00362 DnaA chromosomal rep 98.6 2.9E-07 6.3E-12 90.1 9.9 156 1-173 150-317 (405)
88 PRK05342 clpX ATP-dependent pr 98.5 1.1E-06 2.5E-11 85.5 12.8 172 1-174 122-378 (412)
89 PRK00149 dnaA chromosomal repl 98.5 3.5E-07 7.6E-12 90.8 9.3 157 1-174 162-330 (450)
90 KOG0744|consensus 98.4 6.9E-07 1.5E-11 82.0 8.2 204 117-324 178-413 (423)
91 PRK10787 DNA-binding ATP-depen 98.4 1.4E-06 2.9E-11 91.6 11.5 126 1-138 363-507 (784)
92 COG2256 MGS1 ATPase related to 98.4 1.3E-06 2.9E-11 82.5 10.1 109 1-137 62-176 (436)
93 TIGR00382 clpX endopeptidase C 98.4 1.8E-06 3.9E-11 83.8 11.4 171 1-173 130-383 (413)
94 PRK04195 replication factor C 98.4 3.2E-06 6.9E-11 84.6 12.8 148 1-175 53-208 (482)
95 PRK14086 dnaA chromosomal repl 98.4 2.3E-06 5E-11 86.4 10.5 154 1-171 328-493 (617)
96 PF05496 RuvB_N: Holliday junc 98.3 5.9E-06 1.3E-10 73.1 10.6 145 1-170 64-225 (233)
97 PRK12323 DNA polymerase III su 98.3 3.3E-06 7.1E-11 85.4 9.8 146 1-172 52-231 (700)
98 PRK14088 dnaA chromosomal repl 98.3 3.4E-06 7.4E-11 83.3 8.9 156 1-172 144-311 (440)
99 PRK04132 replication factor C 98.2 1.4E-05 3E-10 83.8 12.9 132 1-157 580-723 (846)
100 PRK06645 DNA polymerase III su 98.2 2E-05 4.3E-10 78.8 13.4 124 31-174 109-237 (507)
101 PRK13342 recombination factor 98.2 1.5E-05 3.2E-10 78.3 12.4 142 1-171 50-201 (413)
102 PRK14962 DNA polymerase III su 98.2 1.8E-05 4E-10 78.5 12.8 145 1-171 50-223 (472)
103 COG0542 clpA ATP-binding subun 98.2 5.2E-06 1.1E-10 85.5 8.8 118 11-140 225-349 (786)
104 PRK07003 DNA polymerase III su 98.2 1.6E-05 3.4E-10 81.7 12.2 146 1-172 52-226 (830)
105 TIGR02928 orc1/cdc6 family rep 98.2 3.1E-05 6.8E-10 74.6 13.3 124 1-138 54-213 (365)
106 PRK05201 hslU ATP-dependent pr 98.2 4.1E-06 9E-11 80.7 7.1 82 48-133 251-344 (443)
107 PRK06893 DNA replication initi 98.2 9.3E-06 2E-10 73.2 8.9 147 1-169 53-206 (229)
108 PRK14956 DNA polymerase III su 98.1 2.3E-05 4.9E-10 77.2 11.8 146 1-172 54-228 (484)
109 PHA02544 44 clamp loader, smal 98.1 1.4E-05 3.1E-10 75.5 10.1 117 1-138 57-174 (316)
110 PRK07940 DNA polymerase III su 98.1 2.2E-05 4.7E-10 76.3 11.4 113 32-167 99-215 (394)
111 KOG2004|consensus 98.1 7.3E-06 1.6E-10 82.4 8.2 127 1-138 452-597 (906)
112 TIGR03420 DnaA_homol_Hda DnaA 98.1 1.6E-05 3.4E-10 71.3 9.6 147 1-172 52-207 (226)
113 PRK14961 DNA polymerase III su 98.1 4.3E-05 9.4E-10 73.7 12.9 146 1-172 52-226 (363)
114 PRK00411 cdc6 cell division co 98.1 5.9E-05 1.3E-09 73.5 13.9 163 1-176 69-264 (394)
115 PTZ00112 origin recognition co 98.1 2.7E-05 5.8E-10 80.8 11.7 122 31-168 852-980 (1164)
116 TIGR02640 gas_vesic_GvpN gas v 98.1 2.7E-05 5.8E-10 71.7 10.7 122 1-137 35-198 (262)
117 TIGR00390 hslU ATP-dependent p 98.1 1.1E-05 2.3E-10 77.9 7.9 83 47-133 248-342 (441)
118 PRK12422 chromosomal replicati 98.1 1.6E-05 3.5E-10 78.4 9.2 154 1-170 155-317 (445)
119 PRK07994 DNA polymerase III su 98.0 5.1E-05 1.1E-09 77.6 12.4 144 1-170 52-224 (647)
120 PRK12402 replication factor C 98.0 6.5E-05 1.4E-09 71.5 12.4 150 1-173 50-230 (337)
121 COG0466 Lon ATP-dependent Lon 98.0 1.6E-05 3.4E-10 80.3 7.7 165 1-176 364-563 (782)
122 PRK11034 clpA ATP-dependent Cl 98.0 2.5E-05 5.5E-10 81.6 9.2 123 1-139 502-668 (758)
123 TIGR01650 PD_CobS cobaltochela 98.0 3.8E-05 8.3E-10 72.1 9.4 124 1-138 78-234 (327)
124 PRK14087 dnaA chromosomal repl 98.0 4.3E-05 9.3E-10 75.7 9.9 156 1-174 155-327 (450)
125 TIGR02902 spore_lonB ATP-depen 98.0 5.6E-05 1.2E-09 76.5 10.9 79 93-176 235-314 (531)
126 PF00004 AAA: ATPase family as 98.0 1.1E-05 2.4E-10 65.4 4.9 102 146-254 29-132 (132)
127 PF00308 Bac_DnaA: Bacterial d 97.9 1.9E-05 4.1E-10 70.7 6.5 154 2-172 49-214 (219)
128 PRK05642 DNA replication initi 97.9 6.9E-05 1.5E-09 67.8 10.0 146 1-171 59-213 (234)
129 PRK14960 DNA polymerase III su 97.9 8E-05 1.7E-09 75.7 11.2 147 1-173 51-226 (702)
130 PRK14951 DNA polymerase III su 97.9 0.00017 3.7E-09 73.7 12.9 122 32-173 106-232 (618)
131 TIGR02397 dnaX_nterm DNA polym 97.8 0.00019 4E-09 68.9 11.8 122 32-173 99-225 (355)
132 PRK14963 DNA polymerase III su 97.8 0.00034 7.3E-09 70.2 13.8 145 1-171 50-222 (504)
133 cd00009 AAA The AAA+ (ATPases 97.8 0.0001 2.2E-09 60.2 8.5 109 1-122 33-150 (151)
134 PRK14969 DNA polymerase III su 97.8 0.00015 3.2E-09 73.3 11.2 147 1-173 52-227 (527)
135 PRK08691 DNA polymerase III su 97.8 0.00016 3.5E-09 74.1 11.3 122 32-173 101-227 (709)
136 PRK14970 DNA polymerase III su 97.8 0.00025 5.5E-09 68.5 12.1 154 1-174 53-217 (367)
137 PRK14964 DNA polymerase III su 97.8 0.00027 5.9E-09 70.3 12.4 138 12-175 84-226 (491)
138 PRK14958 DNA polymerase III su 97.8 0.00011 2.4E-09 73.7 9.8 147 1-173 52-227 (509)
139 PRK14949 DNA polymerase III su 97.8 0.00027 5.8E-09 74.2 12.4 119 33-171 102-225 (944)
140 PRK05563 DNA polymerase III su 97.8 0.0004 8.7E-09 70.7 13.4 135 13-173 88-227 (559)
141 TIGR02639 ClpA ATP-dependent C 97.8 0.00015 3.3E-09 76.3 10.6 121 1-139 498-664 (731)
142 PRK08903 DnaA regulatory inact 97.8 0.00012 2.7E-09 65.7 8.7 140 1-171 56-204 (227)
143 PRK07764 DNA polymerase III su 97.8 0.00024 5.2E-09 75.0 12.0 107 46-172 120-227 (824)
144 PRK14959 DNA polymerase III su 97.7 0.00027 5.9E-09 71.9 11.0 92 46-156 119-211 (624)
145 PRK14957 DNA polymerase III su 97.7 0.00046 9.9E-09 69.6 12.4 145 1-171 52-225 (546)
146 PRK14953 DNA polymerase III su 97.7 0.00035 7.5E-09 69.8 11.2 121 33-173 102-227 (486)
147 COG0714 MoxR-like ATPases [Gen 97.7 0.00015 3.2E-09 69.0 8.2 123 1-136 57-202 (329)
148 PLN03025 replication factor C 97.7 0.00023 4.9E-09 67.5 9.4 140 1-169 48-200 (319)
149 TIGR00678 holB DNA polymerase 97.7 0.00045 9.7E-09 60.1 10.6 86 32-136 78-167 (188)
150 COG2255 RuvB Holliday junction 97.7 0.00056 1.2E-08 62.3 11.1 148 1-173 66-230 (332)
151 PRK14965 DNA polymerase III su 97.7 0.00033 7E-09 71.6 11.0 121 32-172 101-226 (576)
152 COG1219 ClpX ATP-dependent pro 97.6 0.00017 3.7E-09 66.5 7.6 86 1-86 111-202 (408)
153 PRK13341 recombination factor 97.6 0.00041 8.9E-09 72.4 11.3 142 1-171 66-222 (725)
154 KOG2028|consensus 97.6 0.00028 6.1E-09 66.2 8.9 164 1-192 176-363 (554)
155 PF05673 DUF815: Protein of un 97.6 0.0016 3.6E-08 58.5 13.3 147 1-169 66-244 (249)
156 PRK08727 hypothetical protein; 97.6 0.0006 1.3E-08 61.6 10.6 131 1-156 55-195 (233)
157 PRK07133 DNA polymerase III su 97.6 0.00088 1.9E-08 69.3 12.9 121 32-172 100-225 (725)
158 PRK00080 ruvB Holliday junctio 97.6 0.00041 8.9E-09 66.0 9.7 119 223-344 150-273 (328)
159 TIGR02902 spore_lonB ATP-depen 97.6 0.00019 4.2E-09 72.6 7.6 96 224-324 235-331 (531)
160 PRK08084 DNA replication initi 97.6 0.0003 6.6E-09 63.6 8.1 145 1-170 59-213 (235)
161 PRK14952 DNA polymerase III su 97.5 0.00089 1.9E-08 68.2 11.9 107 47-173 119-226 (584)
162 TIGR00635 ruvB Holliday juncti 97.5 0.00049 1.1E-08 64.7 9.2 101 223-326 129-230 (305)
163 PRK05896 DNA polymerase III su 97.5 0.00075 1.6E-08 68.4 10.6 121 32-172 101-226 (605)
164 CHL00181 cbbX CbbX; Provisiona 97.5 0.00053 1.1E-08 63.9 8.9 109 205-318 145-271 (287)
165 smart00382 AAA ATPases associa 97.5 0.00067 1.5E-08 54.7 8.5 114 1-124 16-147 (148)
166 TIGR03345 VI_ClpV1 type VI sec 97.5 0.001 2.2E-08 70.9 11.8 155 1-172 610-828 (852)
167 PHA02244 ATPase-like protein 97.5 0.0014 2.9E-08 62.6 11.3 110 1-126 133-263 (383)
168 PRK14948 DNA polymerase III su 97.4 0.002 4.3E-08 66.3 13.1 119 30-168 101-224 (620)
169 PRK06647 DNA polymerase III su 97.4 0.0014 3E-08 66.7 11.3 121 33-173 102-227 (563)
170 PRK06305 DNA polymerase III su 97.4 0.0024 5.1E-08 63.4 12.6 106 46-171 121-227 (451)
171 PRK00440 rfc replication facto 97.4 0.0033 7E-08 59.2 13.1 144 1-170 52-207 (319)
172 PRK08451 DNA polymerase III su 97.4 0.0033 7.1E-08 63.3 13.5 121 33-174 100-226 (535)
173 KOG1969|consensus 97.3 0.0061 1.3E-07 62.1 14.0 153 1-176 340-517 (877)
174 KOG0745|consensus 97.3 0.0012 2.6E-08 63.4 8.4 86 1-86 240-331 (564)
175 PRK09111 DNA polymerase III su 97.2 0.0043 9.3E-08 63.5 13.0 122 32-173 114-240 (598)
176 TIGR02903 spore_lon_C ATP-depe 97.2 0.0083 1.8E-07 61.9 14.5 47 92-141 323-370 (615)
177 PRK11331 5-methylcytosine-spec 97.1 0.0021 4.7E-08 62.9 8.8 107 1-123 208-357 (459)
178 COG0593 DnaA ATPase involved i 97.1 0.003 6.5E-08 61.2 9.4 156 2-174 128-294 (408)
179 TIGR00763 lon ATP-dependent pr 97.1 0.0025 5.4E-08 67.6 9.3 83 222-307 462-560 (775)
180 COG2812 DnaX DNA polymerase II 97.0 0.0018 4E-08 64.4 7.7 125 30-174 99-228 (515)
181 PF09336 Vps4_C: Vps4 C termin 97.0 0.00034 7.3E-09 49.2 1.7 34 311-344 28-62 (62)
182 TIGR03346 chaperone_ClpB ATP-d 97.0 0.009 2E-07 64.1 13.3 123 1-138 609-777 (852)
183 PF07724 AAA_2: AAA domain (Cd 97.0 0.002 4.2E-08 55.3 6.2 99 2-105 18-133 (171)
184 PRK06620 hypothetical protein; 97.0 0.0059 1.3E-07 54.4 9.5 102 47-169 86-192 (214)
185 CHL00095 clpC Clp protease ATP 96.9 0.0044 9.5E-08 66.2 10.0 120 1-138 553-733 (821)
186 TIGR02928 orc1/cdc6 family rep 96.9 0.0036 7.7E-08 60.3 8.5 103 222-327 164-276 (365)
187 PRK00411 cdc6 cell division co 96.9 0.0051 1.1E-07 59.9 9.1 118 207-327 158-284 (394)
188 PRK09087 hypothetical protein; 96.9 0.0045 9.7E-08 55.6 8.0 92 48-156 89-186 (226)
189 PRK14971 DNA polymerase III su 96.8 0.017 3.7E-07 59.5 13.1 120 32-171 103-227 (614)
190 PRK14954 DNA polymerase III su 96.8 0.017 3.7E-07 59.3 12.8 121 32-172 109-234 (620)
191 PRK14955 DNA polymerase III su 96.8 0.0083 1.8E-07 58.6 10.0 123 32-174 109-236 (397)
192 PRK14950 DNA polymerase III su 96.7 0.023 4.9E-07 58.5 13.0 119 33-171 103-226 (585)
193 PRK05707 DNA polymerase III su 96.7 0.014 3E-07 55.5 10.5 87 32-137 88-178 (328)
194 PRK09112 DNA polymerase III su 96.7 0.019 4.1E-07 55.1 11.4 72 46-136 141-212 (351)
195 TIGR02880 cbbX_cfxQ probable R 96.7 0.0063 1.4E-07 56.6 8.0 98 205-306 144-254 (284)
196 TIGR02881 spore_V_K stage V sp 96.6 0.021 4.7E-07 52.4 11.0 97 206-306 128-239 (261)
197 TIGR00362 DnaA chromosomal rep 96.6 0.016 3.4E-07 56.8 10.4 113 209-325 219-337 (405)
198 PF07728 AAA_5: AAA domain (dy 96.5 0.00047 1E-08 56.7 -1.0 101 1-115 13-139 (139)
199 COG2607 Predicted ATPase (AAA+ 96.4 0.058 1.3E-06 48.3 11.6 147 1-169 99-276 (287)
200 PRK10865 protein disaggregatio 96.4 0.014 3.1E-07 62.5 9.4 123 1-139 612-781 (857)
201 PRK06964 DNA polymerase III su 96.4 0.016 3.5E-07 55.2 8.9 85 32-135 114-202 (342)
202 PRK00149 dnaA chromosomal repl 96.4 0.017 3.7E-07 57.4 9.5 113 209-326 231-350 (450)
203 COG1474 CDC6 Cdc6-related prot 96.4 0.045 9.8E-07 52.8 11.7 130 32-176 108-247 (366)
204 PRK07471 DNA polymerase III su 96.2 0.042 9.2E-07 53.0 10.6 86 33-137 124-213 (365)
205 PRK06871 DNA polymerase III su 96.2 0.032 6.9E-07 52.9 9.3 86 32-136 89-178 (325)
206 COG0470 HolB ATPase involved i 96.2 0.038 8.2E-07 52.0 10.0 112 2-134 39-178 (325)
207 COG1220 HslU ATP-dependent pro 96.2 0.018 4E-07 53.8 7.4 92 36-133 242-345 (444)
208 COG0542 clpA ATP-binding subun 96.1 0.015 3.3E-07 60.5 7.5 120 2-139 536-707 (786)
209 TIGR03015 pepcterm_ATPase puta 96.0 0.027 5.8E-07 51.7 8.0 118 43-177 120-249 (269)
210 PRK05564 DNA polymerase III su 95.9 0.051 1.1E-06 51.3 9.6 113 2-137 41-165 (313)
211 KOG0989|consensus 95.9 0.02 4.3E-07 52.9 6.3 97 48-167 131-228 (346)
212 PRK06090 DNA polymerase III su 95.9 0.055 1.2E-06 51.1 9.4 85 32-135 90-178 (319)
213 PRK07993 DNA polymerase III su 95.8 0.042 9.2E-07 52.3 8.5 85 32-135 90-178 (334)
214 KOG1514|consensus 95.8 0.11 2.4E-06 53.1 11.5 152 13-178 458-632 (767)
215 PRK08769 DNA polymerase III su 95.5 0.14 3E-06 48.5 10.7 85 32-135 95-183 (319)
216 TIGR00764 lon_rel lon-related 95.5 0.024 5.2E-07 58.4 6.1 120 222-343 267-409 (608)
217 TIGR00602 rad24 checkpoint pro 95.3 0.14 3.1E-06 52.8 10.6 156 1-176 124-330 (637)
218 TIGR02031 BchD-ChlD magnesium 95.3 0.075 1.6E-06 54.6 8.6 124 1-137 30-174 (589)
219 PRK13531 regulatory ATPase Rav 95.3 0.053 1.2E-06 53.8 7.2 117 1-136 53-193 (498)
220 PRK06893 DNA replication initi 95.2 0.11 2.4E-06 46.6 8.6 109 211-322 113-227 (229)
221 TIGR02442 Cob-chelat-sub cobal 95.2 0.056 1.2E-06 56.1 7.5 76 48-136 128-213 (633)
222 TIGR02397 dnaX_nterm DNA polym 95.2 0.058 1.3E-06 51.6 7.1 106 207-322 133-239 (355)
223 PF01637 Arch_ATPase: Archaeal 95.1 0.07 1.5E-06 47.2 7.1 116 31-158 102-227 (234)
224 TIGR02030 BchI-ChlI magnesium 95.0 0.076 1.6E-06 50.6 7.4 104 222-327 173-311 (337)
225 PRK14961 DNA polymerase III su 95.0 0.11 2.3E-06 50.3 8.5 106 208-323 136-242 (363)
226 PRK06645 DNA polymerase III su 95.0 0.093 2E-06 52.8 8.3 108 207-321 144-252 (507)
227 PRK08116 hypothetical protein; 94.8 0.051 1.1E-06 50.2 5.5 109 1-126 128-251 (268)
228 PRK14088 dnaA chromosomal repl 94.8 0.15 3.4E-06 50.4 9.1 112 209-325 214-332 (440)
229 PRK08058 DNA polymerase III su 94.7 0.15 3.3E-06 48.4 8.5 84 33-135 93-180 (329)
230 PF12774 AAA_6: Hydrolytic ATP 94.4 0.44 9.5E-06 42.9 10.3 111 2-133 47-176 (231)
231 COG1224 TIP49 DNA helicase TIP 94.4 0.26 5.7E-06 46.7 8.9 111 47-177 292-415 (450)
232 TIGR03420 DnaA_homol_Hda DnaA 94.3 0.2 4.3E-06 44.6 8.0 104 215-322 116-225 (226)
233 PF05621 TniB: Bacterial TniB 94.3 0.12 2.7E-06 48.0 6.6 131 34-177 133-272 (302)
234 PRK13342 recombination factor 94.3 0.25 5.4E-06 48.6 9.2 96 221-326 118-220 (413)
235 PF06068 TIP49: TIP49 C-termin 94.3 0.085 1.8E-06 50.4 5.5 77 47-143 279-367 (398)
236 PRK13407 bchI magnesium chelat 94.3 0.12 2.7E-06 49.1 6.7 77 48-137 130-216 (334)
237 PRK14962 DNA polymerase III su 94.1 0.15 3.3E-06 50.9 7.4 107 208-324 134-241 (472)
238 PRK07399 DNA polymerase III su 94.1 0.44 9.5E-06 45.0 10.1 105 34-160 108-216 (314)
239 PF13177 DNA_pol3_delta2: DNA 94.1 0.14 3E-06 43.4 6.1 92 10-123 65-160 (162)
240 PRK12422 chromosomal replicati 94.1 0.42 9.2E-06 47.4 10.3 113 210-325 223-343 (445)
241 TIGR03015 pepcterm_ATPase puta 94.1 0.37 8E-06 44.0 9.4 81 245-326 182-267 (269)
242 PRK05563 DNA polymerase III su 94.1 0.21 4.5E-06 51.1 8.3 103 207-319 135-238 (559)
243 PRK08727 hypothetical protein; 94.0 0.33 7.2E-06 43.7 8.9 105 215-324 119-230 (233)
244 PRK07276 DNA polymerase III su 94.0 0.34 7.4E-06 45.1 8.9 82 32-133 86-171 (290)
245 PRK14087 dnaA chromosomal repl 93.9 0.26 5.7E-06 49.0 8.5 116 208-326 225-349 (450)
246 PRK13407 bchI magnesium chelat 93.8 0.22 4.7E-06 47.5 7.4 98 222-323 170-304 (334)
247 PRK09087 hypothetical protein; 93.7 0.4 8.7E-06 43.0 8.6 112 210-325 105-222 (226)
248 PRK07952 DNA replication prote 93.7 0.17 3.7E-06 46.0 6.2 87 1-102 113-205 (244)
249 PF13173 AAA_14: AAA domain 93.5 0.45 9.8E-06 38.4 8.0 107 1-128 16-126 (128)
250 PRK08903 DnaA regulatory inact 93.4 0.63 1.4E-05 41.5 9.5 109 211-323 110-224 (227)
251 TIGR02030 BchI-ChlI magnesium 93.4 0.22 4.7E-06 47.5 6.6 78 47-137 132-219 (337)
252 PRK04195 replication factor C 93.3 0.36 7.7E-06 48.5 8.4 93 222-322 129-222 (482)
253 PRK06581 DNA polymerase III su 93.3 0.42 9E-06 43.1 7.8 111 10-139 48-163 (263)
254 CHL00081 chlI Mg-protoporyphyr 93.1 0.37 8.1E-06 46.1 7.8 104 222-327 186-324 (350)
255 KOG2680|consensus 93.1 0.65 1.4E-05 43.1 8.8 114 46-178 288-413 (454)
256 KOG1051|consensus 93.0 0.32 7E-06 51.7 7.8 115 12-139 243-365 (898)
257 PRK12402 replication factor C 92.9 0.36 7.9E-06 45.6 7.5 104 210-324 144-248 (337)
258 PF14516 AAA_35: AAA-like doma 92.8 1.1 2.4E-05 42.7 10.5 128 33-170 111-243 (331)
259 PRK14086 dnaA chromosomal repl 92.7 1.2 2.5E-05 45.8 11.0 112 210-327 398-517 (617)
260 PRK11388 DNA-binding transcrip 92.6 1.1 2.4E-05 46.6 11.3 113 2-131 363-500 (638)
261 PTZ00112 origin recognition co 92.5 0.52 1.1E-05 50.1 8.4 101 221-327 900-1008(1164)
262 PRK08699 DNA polymerase III su 92.3 0.58 1.3E-05 44.4 7.9 86 31-135 94-183 (325)
263 TIGR00368 Mg chelatase-related 92.3 0.66 1.4E-05 46.7 8.6 36 288-323 462-497 (499)
264 PRK08084 DNA replication initi 92.1 0.74 1.6E-05 41.5 8.1 105 213-322 121-233 (235)
265 PRK08451 DNA polymerase III su 92.1 0.74 1.6E-05 46.6 8.7 104 207-320 133-237 (535)
266 PRK14964 DNA polymerase III su 92.0 0.51 1.1E-05 47.3 7.5 105 207-321 132-237 (491)
267 PRK14960 DNA polymerase III su 92.0 0.54 1.2E-05 48.5 7.6 105 207-321 134-239 (702)
268 CHL00081 chlI Mg-protoporyphyr 91.9 0.35 7.6E-06 46.3 5.9 78 47-137 145-232 (350)
269 KOG2227|consensus 91.8 0.43 9.2E-06 46.8 6.3 106 47-166 257-368 (529)
270 KOG1942|consensus 91.8 1.8 3.8E-05 40.2 9.9 96 45-160 295-404 (456)
271 PRK10787 DNA-binding ATP-depen 91.8 0.5 1.1E-05 50.3 7.5 44 222-269 464-507 (784)
272 PRK14970 DNA polymerase III su 91.6 0.7 1.5E-05 44.6 7.8 105 208-322 125-230 (367)
273 TIGR02974 phageshock_pspF psp 91.5 2.8 6.1E-05 39.9 11.7 113 2-131 37-177 (329)
274 COG3267 ExeA Type II secretory 91.5 3.5 7.6E-05 37.5 11.3 128 37-178 121-257 (269)
275 PRK06620 hypothetical protein; 91.4 1.1 2.5E-05 39.7 8.4 107 211-322 102-213 (214)
276 PF07693 KAP_NTPase: KAP famil 91.4 1 2.3E-05 42.3 8.6 81 45-140 171-266 (325)
277 PRK14956 DNA polymerase III su 91.2 1 2.3E-05 44.8 8.6 105 207-321 137-242 (484)
278 PRK14951 DNA polymerase III su 91.1 0.92 2E-05 46.8 8.3 104 208-321 141-245 (618)
279 PRK07133 DNA polymerase III su 91.0 0.56 1.2E-05 49.1 6.7 89 207-301 134-223 (725)
280 PRK07003 DNA polymerase III su 90.8 1.3 2.8E-05 46.5 9.1 90 207-302 135-225 (830)
281 PRK07940 DNA polymerase III su 90.8 0.45 9.8E-06 46.4 5.6 81 208-297 134-214 (394)
282 PRK14963 DNA polymerase III su 90.7 1.4 3.1E-05 44.4 9.2 105 207-322 132-237 (504)
283 PRK05642 DNA replication initi 90.5 2.2 4.7E-05 38.5 9.4 109 209-322 117-232 (234)
284 smart00350 MCM minichromosome 90.5 2.4 5.1E-05 43.0 10.6 103 222-326 342-505 (509)
285 PRK14958 DNA polymerase III su 90.4 0.69 1.5E-05 46.7 6.7 107 207-323 135-242 (509)
286 PRK05022 anaerobic nitric oxid 90.3 2.9 6.2E-05 42.4 11.1 113 2-131 225-365 (509)
287 COG0714 MoxR-like ATPases [Gen 90.3 0.75 1.6E-05 43.7 6.5 45 222-268 153-203 (329)
288 PRK14953 DNA polymerase III su 90.2 1.1 2.5E-05 44.9 8.0 104 208-321 136-240 (486)
289 PRK09183 transposase/IS protei 90.1 0.57 1.2E-05 43.0 5.3 87 1-102 116-206 (259)
290 TIGR02031 BchD-ChlD magnesium 90.0 1.2 2.7E-05 45.8 8.2 102 222-327 126-260 (589)
291 PF13401 AAA_22: AAA domain; P 89.9 0.69 1.5E-05 37.0 5.2 59 1-59 18-100 (131)
292 TIGR02640 gas_vesic_GvpN gas v 89.8 0.68 1.5E-05 42.5 5.6 93 223-325 151-257 (262)
293 PRK05818 DNA polymerase III su 89.7 2 4.4E-05 39.3 8.5 59 47-124 89-147 (261)
294 KOG2035|consensus 89.7 2.2 4.7E-05 39.3 8.5 91 48-157 129-220 (351)
295 PRK05896 DNA polymerase III su 89.7 0.67 1.5E-05 47.5 5.9 103 208-320 136-239 (605)
296 PF05729 NACHT: NACHT domain 89.7 1.7 3.6E-05 36.0 7.6 88 41-139 76-165 (166)
297 PRK08181 transposase; Validate 89.4 1 2.2E-05 41.6 6.5 86 1-102 120-209 (269)
298 TIGR01817 nifA Nif-specific re 89.4 3 6.5E-05 42.4 10.5 154 1-174 233-428 (534)
299 cd01120 RecA-like_NTPases RecA 89.4 3.2 7E-05 34.0 9.1 65 37-105 76-140 (165)
300 smart00350 MCM minichromosome 89.3 1.3 2.8E-05 44.8 7.7 80 47-139 301-402 (509)
301 PRK10365 transcriptional regul 89.3 1.4 3E-05 43.4 7.9 117 2-138 177-328 (441)
302 PRK08485 DNA polymerase III su 89.1 3.9 8.5E-05 35.8 9.4 86 32-135 39-137 (206)
303 PRK09111 DNA polymerase III su 89.1 1.8 3.9E-05 44.6 8.6 106 207-322 148-254 (598)
304 PRK14959 DNA polymerase III su 89.1 0.81 1.8E-05 47.1 6.0 103 208-320 136-239 (624)
305 PRK10820 DNA-binding transcrip 89.1 3.7 8.1E-05 41.7 10.8 114 1-131 241-382 (520)
306 PRK07994 DNA polymerase III su 89.0 2.2 4.7E-05 44.3 9.0 89 207-301 135-224 (647)
307 PF05621 TniB: Bacterial TniB 88.9 0.85 1.8E-05 42.5 5.5 89 236-328 197-291 (302)
308 PRK00440 rfc replication facto 88.9 1.1 2.4E-05 41.9 6.5 104 210-324 121-225 (319)
309 PRK11608 pspF phage shock prot 88.9 4.9 0.00011 38.1 10.9 113 2-131 44-184 (326)
310 PRK06647 DNA polymerase III su 88.8 1.6 3.5E-05 44.7 8.0 105 207-321 135-240 (563)
311 TIGR02903 spore_lon_C ATP-depe 88.8 1.7 3.6E-05 45.1 8.2 100 223-327 323-432 (615)
312 PRK06305 DNA polymerase III su 88.8 1.2 2.5E-05 44.4 6.8 104 208-321 138-242 (451)
313 PRK12377 putative replication 88.8 1.2 2.7E-05 40.5 6.5 87 1-102 115-206 (248)
314 PRK07132 DNA polymerase III su 88.8 1.4 3E-05 41.4 6.9 71 46-135 90-160 (299)
315 COG1221 PspF Transcriptional r 88.7 0.52 1.1E-05 45.8 4.1 156 2-175 116-310 (403)
316 PRK11361 acetoacetate metaboli 88.6 2.3 5E-05 42.1 8.9 113 2-131 181-321 (457)
317 PRK15429 formate hydrogenlyase 88.6 5.2 0.00011 42.1 11.9 113 1-131 413-554 (686)
318 PF05496 RuvB_N: Holliday junc 88.3 0.77 1.7E-05 41.0 4.6 66 223-290 149-215 (233)
319 KOG1051|consensus 88.3 2.3 4.9E-05 45.5 8.7 85 3-103 607-712 (898)
320 KOG2228|consensus 87.9 2.1 4.6E-05 40.5 7.4 96 28-137 114-219 (408)
321 PRK07764 DNA polymerase III su 87.7 2.3 5.1E-05 45.5 8.6 88 207-300 136-224 (824)
322 PRK12323 DNA polymerase III su 87.6 1.3 2.8E-05 45.8 6.3 90 207-302 140-230 (700)
323 TIGR02442 Cob-chelat-sub cobal 87.6 2.1 4.5E-05 44.6 8.0 103 222-327 168-306 (633)
324 PRK08691 DNA polymerase III su 87.6 1.6 3.4E-05 45.5 6.9 107 207-323 135-242 (709)
325 COG1239 ChlI Mg-chelatase subu 87.5 2 4.3E-05 41.8 7.2 83 42-138 141-233 (423)
326 KOG1968|consensus 87.5 1.8 3.9E-05 46.3 7.5 149 2-171 372-533 (871)
327 PF00158 Sigma54_activat: Sigm 87.5 4.6 9.9E-05 34.4 8.8 87 1-101 36-143 (168)
328 PF13304 AAA_21: AAA domain; P 87.3 1.5 3.2E-05 38.7 6.1 65 28-106 237-303 (303)
329 TIGR01818 ntrC nitrogen regula 87.3 3.1 6.7E-05 41.3 8.9 54 2-59 172-241 (463)
330 PRK14952 DNA polymerase III su 87.2 1.4 3.1E-05 45.1 6.4 89 207-301 134-223 (584)
331 PRK05917 DNA polymerase III su 87.1 2.4 5.2E-05 39.5 7.3 74 32-124 77-154 (290)
332 PF05707 Zot: Zonular occluden 87.1 0.84 1.8E-05 39.8 4.2 68 46-124 79-146 (193)
333 PRK06921 hypothetical protein; 87.1 3 6.4E-05 38.4 7.9 54 1-57 131-188 (266)
334 PRK13341 recombination factor 86.6 2.1 4.5E-05 45.2 7.4 101 220-324 134-246 (725)
335 PRK14957 DNA polymerase III su 86.5 1.9 4.2E-05 43.9 6.8 105 207-321 135-240 (546)
336 TIGR00678 holB DNA polymerase 86.4 1 2.2E-05 38.9 4.3 55 208-267 113-167 (188)
337 PF07726 AAA_3: ATPase family 86.3 1.4 3E-05 35.8 4.6 97 1-115 13-129 (131)
338 COG1067 LonB Predicted ATP-dep 86.2 3.5 7.5E-05 42.8 8.6 117 223-341 276-415 (647)
339 PRK06964 DNA polymerase III su 86.1 0.78 1.7E-05 43.8 3.6 56 207-267 148-203 (342)
340 PRK14965 DNA polymerase III su 86.0 2.1 4.5E-05 44.1 6.9 89 207-301 135-224 (576)
341 TIGR02915 PEP_resp_reg putativ 86.0 3.7 8E-05 40.6 8.6 110 2-131 177-317 (445)
342 PRK06526 transposase; Provisio 85.9 1.7 3.7E-05 39.7 5.7 86 1-102 112-201 (254)
343 COG0593 DnaA ATPase involved i 85.7 7.3 0.00016 38.1 10.1 138 203-345 189-334 (408)
344 PRK06835 DNA replication prote 85.3 3.2 6.9E-05 39.5 7.3 87 1-102 197-289 (329)
345 PRK08939 primosomal protein Dn 85.0 1.1 2.4E-05 42.1 4.1 86 1-102 170-261 (306)
346 KOG2028|consensus 84.8 4.8 0.0001 38.6 8.0 104 220-326 247-369 (554)
347 PRK14700 recombination factor 84.7 3.5 7.5E-05 38.4 7.0 120 220-346 5-136 (300)
348 TIGR00764 lon_rel lon-related 83.9 4.2 9.1E-05 42.1 8.1 115 47-174 218-371 (608)
349 COG2204 AtoC Response regulato 83.9 5 0.00011 39.9 8.1 113 2-131 179-319 (464)
350 PF12846 AAA_10: AAA-like doma 83.8 1.7 3.6E-05 40.0 4.8 71 45-130 219-294 (304)
351 KOG0478|consensus 83.5 43 0.00094 34.9 14.6 76 252-327 712-790 (804)
352 COG2255 RuvB Holliday junction 83.3 16 0.00035 33.9 10.5 101 223-326 151-252 (332)
353 COG2256 MGS1 ATPase related to 83.3 5.8 0.00013 38.5 8.0 121 220-347 129-260 (436)
354 PLN03025 replication factor C 82.9 2.8 6.1E-05 39.6 5.9 100 209-319 117-217 (319)
355 PRK14950 DNA polymerase III su 82.7 5.6 0.00012 41.0 8.4 103 208-320 137-240 (585)
356 PRK14969 DNA polymerase III su 82.4 3.6 7.8E-05 41.8 6.8 106 207-322 135-241 (527)
357 COG1224 TIP49 DNA helicase TIP 81.6 11 0.00023 36.2 8.9 98 225-327 322-434 (450)
358 PHA02544 44 clamp loader, smal 81.4 1.5 3.2E-05 41.2 3.5 45 222-269 130-174 (316)
359 PRK15115 response regulator Gl 81.3 10 0.00022 37.4 9.5 110 2-131 172-312 (444)
360 PF00931 NB-ARC: NB-ARC domain 81.0 5.1 0.00011 36.7 6.9 104 32-158 88-195 (287)
361 PRK13765 ATP-dependent proteas 80.5 3.8 8.2E-05 42.6 6.2 115 223-339 277-414 (637)
362 PRK10923 glnG nitrogen regulat 80.1 7.6 0.00016 38.6 8.2 153 2-174 176-371 (469)
363 PRK13531 regulatory ATPase Rav 80.1 18 0.0004 36.2 10.5 98 225-325 149-283 (498)
364 PRK09862 putative ATP-dependen 79.3 4.6 0.0001 40.7 6.3 38 287-324 454-491 (506)
365 PF14532 Sigma54_activ_2: Sigm 78.8 1.1 2.5E-05 36.5 1.5 71 2-101 36-109 (138)
366 PRK09862 putative ATP-dependen 77.8 13 0.00028 37.5 8.9 35 222-258 336-391 (506)
367 PRK15424 propionate catabolism 77.8 5.6 0.00012 40.5 6.4 113 2-131 257-406 (538)
368 PRK14971 DNA polymerase III su 77.2 6.5 0.00014 40.8 6.8 87 208-300 138-225 (614)
369 PRK13406 bchD magnesium chelat 77.0 10 0.00022 39.1 8.0 102 222-326 135-251 (584)
370 PRK13406 bchD magnesium chelat 76.9 4.3 9.3E-05 41.8 5.3 111 1-128 39-173 (584)
371 PRK14949 DNA polymerase III su 75.4 24 0.00053 38.1 10.4 90 207-302 135-225 (944)
372 PRK05564 DNA polymerase III su 75.3 23 0.00051 33.2 9.6 77 207-291 109-185 (313)
373 PF03215 Rad17: Rad17 cell cyc 74.9 20 0.00042 36.4 9.3 158 1-175 59-269 (519)
374 PF05673 DUF815: Protein of un 74.5 17 0.00037 33.0 7.9 67 208-274 124-213 (249)
375 COG3604 FhlA Transcriptional r 74.3 12 0.00026 37.4 7.3 158 2-174 261-456 (550)
376 PF05872 DUF853: Bacterial pro 73.3 5.8 0.00013 39.2 4.8 67 34-111 238-309 (502)
377 PRK14955 DNA polymerase III su 73.1 6.2 0.00014 38.5 5.2 109 208-322 144-254 (397)
378 PF00308 Bac_DnaA: Bacterial d 72.6 9.3 0.0002 34.0 5.8 90 208-301 116-212 (219)
379 TIGR02329 propionate_PrpR prop 72.4 5.4 0.00012 40.6 4.7 120 2-138 250-402 (526)
380 PF13086 AAA_11: AAA domain; P 72.1 2.5 5.4E-05 37.1 2.0 36 197-232 23-64 (236)
381 PRK14954 DNA polymerase III su 72.0 14 0.0003 38.4 7.5 108 208-321 144-253 (620)
382 PF00493 MCM: MCM2/3/5 family 71.8 11 0.00024 35.8 6.5 82 47-141 122-225 (331)
383 PRK14700 recombination factor 70.5 7.3 0.00016 36.3 4.7 75 89-170 5-88 (300)
384 PRK14948 DNA polymerase III su 69.6 17 0.00037 37.8 7.7 87 207-299 137-224 (620)
385 PRK09112 DNA polymerase III su 69.3 12 0.00026 36.0 6.0 80 208-293 158-237 (351)
386 COG1484 DnaC DNA replication p 67.8 8.6 0.00019 35.1 4.6 53 1-58 119-179 (254)
387 KOG2680|consensus 67.5 43 0.00094 31.5 8.9 97 225-326 319-430 (454)
388 COG2607 Predicted ATPase (AAA+ 66.8 18 0.00038 32.9 6.1 53 222-274 173-245 (287)
389 TIGR00368 Mg chelatase-related 65.8 61 0.0013 32.8 10.6 35 222-258 337-394 (499)
390 PRK04132 replication factor C 65.0 19 0.00042 38.7 7.1 65 222-289 659-724 (846)
391 PRK11331 5-methylcytosine-spec 64.9 3.2 7E-05 41.1 1.2 33 218-253 320-356 (459)
392 KOG0480|consensus 64.4 98 0.0021 32.2 11.4 71 255-329 577-647 (764)
393 smart00763 AAA_PrkA PrkA AAA d 64.1 19 0.00041 34.7 6.2 75 48-139 238-329 (361)
394 PF01695 IstB_IS21: IstB-like 63.7 6.3 0.00014 33.9 2.7 86 1-102 61-150 (178)
395 TIGR01650 PD_CobS cobaltochela 63.6 14 0.0003 35.1 5.2 46 223-270 178-235 (327)
396 PRK11823 DNA repair protein Ra 63.5 40 0.00087 33.5 8.7 29 34-62 144-172 (446)
397 PF00910 RNA_helicase: RNA hel 63.5 20 0.00043 27.7 5.3 12 48-59 51-62 (107)
398 COG1474 CDC6 Cdc6-related prot 62.1 36 0.00078 32.9 7.9 104 221-327 154-267 (366)
399 PF06068 TIP49: TIP49 C-termin 61.8 8.8 0.00019 37.0 3.5 40 2-42 65-106 (398)
400 PRK04841 transcriptional regul 60.5 49 0.0011 35.8 9.5 107 35-161 109-221 (903)
401 COG1121 ZnuC ABC-type Mn/Zn tr 60.5 39 0.00084 30.9 7.3 57 36-106 147-203 (254)
402 PHA00012 I assembly protein 59.5 11 0.00023 35.8 3.6 56 47-111 82-137 (361)
403 PF03969 AFG1_ATPase: AFG1-lik 59.2 21 0.00046 34.4 5.7 77 48-150 129-206 (362)
404 cd03283 ABC_MutS-like MutS-lik 59.0 46 0.001 29.0 7.5 60 33-106 92-152 (199)
405 COG3267 ExeA Type II secretory 58.9 31 0.00066 31.5 6.2 74 245-319 190-267 (269)
406 cd07981 TAF12 TATA Binding Pro 58.9 23 0.0005 25.4 4.6 60 261-325 8-67 (72)
407 COG3899 Predicted ATPase [Gene 57.3 68 0.0015 34.8 9.7 116 43-172 151-266 (849)
408 COG1136 SalX ABC-type antimicr 57.0 36 0.00078 30.5 6.4 67 36-122 150-216 (226)
409 TIGR02237 recomb_radB DNA repa 56.7 18 0.00039 31.5 4.5 68 35-105 86-153 (209)
410 PRK13539 cytochrome c biogenes 56.5 54 0.0012 28.5 7.5 55 39-107 138-192 (207)
411 cd00009 AAA The AAA+ (ATPases 56.1 12 0.00025 29.6 3.0 31 221-253 118-150 (151)
412 PF07728 AAA_5: AAA domain (dy 56.0 5.8 0.00013 32.1 1.1 22 223-246 114-139 (139)
413 PRK05574 holA DNA polymerase I 56.0 1.2E+02 0.0025 28.5 10.2 123 35-172 61-194 (340)
414 PRK05574 holA DNA polymerase I 56.0 89 0.0019 29.3 9.5 76 247-326 138-214 (340)
415 PRK09376 rho transcription ter 55.4 70 0.0015 31.4 8.4 98 1-98 183-316 (416)
416 PF12775 AAA_7: P-loop contain 55.3 20 0.00043 33.1 4.6 85 46-139 100-195 (272)
417 COG1131 CcmA ABC-type multidru 55.1 37 0.00079 31.7 6.5 70 22-106 132-201 (293)
418 KOG1942|consensus 54.8 39 0.00085 31.6 6.3 88 233-323 348-436 (456)
419 PRK05707 DNA polymerase III su 54.7 22 0.00048 33.8 5.0 57 207-268 122-178 (328)
420 KOG3406|consensus 54.1 11 0.00024 30.1 2.4 27 3-29 68-94 (134)
421 PHA02244 ATPase-like protein 53.6 29 0.00063 33.6 5.5 35 222-259 220-265 (383)
422 COG1116 TauB ABC-type nitrate/ 53.5 59 0.0013 29.5 7.2 36 19-54 119-156 (248)
423 COG2909 MalT ATP-dependent tra 53.0 75 0.0016 34.1 8.7 108 34-160 116-228 (894)
424 PRK07452 DNA polymerase III su 53.0 96 0.0021 29.1 9.1 123 35-173 46-179 (326)
425 PF00808 CBFD_NFYB_HMF: Histon 52.0 24 0.00052 24.6 3.6 30 293-322 36-65 (65)
426 cd00983 recA RecA is a bacter 51.8 59 0.0013 30.9 7.3 71 31-101 118-191 (325)
427 PTZ00111 DNA replication licen 51.7 60 0.0013 35.2 8.0 78 48-138 559-658 (915)
428 PRK13765 ATP-dependent proteas 51.0 1.1E+02 0.0025 31.9 9.7 115 10-138 179-329 (637)
429 PF02969 TAF: TATA box binding 50.3 34 0.00074 24.2 4.1 31 293-323 36-66 (66)
430 cd01121 Sms Sms (bacterial rad 49.0 85 0.0018 30.4 8.1 30 33-62 145-174 (372)
431 TIGR01128 holA DNA polymerase 48.8 1.4E+02 0.003 27.4 9.4 133 35-185 31-171 (302)
432 PRK09361 radB DNA repair and r 48.3 54 0.0012 28.9 6.2 17 45-61 106-122 (225)
433 PRK13538 cytochrome c biogenes 47.7 87 0.0019 27.1 7.4 55 39-107 140-194 (204)
434 COG1373 Predicted ATPase (AAA+ 47.5 1.2E+02 0.0025 29.7 8.9 109 3-131 53-161 (398)
435 PRK13541 cytochrome c biogenes 47.5 99 0.0022 26.5 7.7 55 39-107 134-188 (195)
436 cd01128 rho_factor Transcripti 46.5 1.5E+02 0.0033 26.9 8.9 53 46-98 103-163 (249)
437 TIGR01166 cbiO cobalt transpor 46.3 95 0.0021 26.4 7.3 52 38-103 137-188 (190)
438 PF05272 VirE: Virulence-assoc 46.3 37 0.00081 29.7 4.7 62 48-123 97-169 (198)
439 PRK13898 type IV secretion sys 46.0 68 0.0015 34.5 7.6 97 14-126 608-712 (800)
440 COG2812 DnaX DNA polymerase II 46.0 1.2E+02 0.0026 30.7 8.8 93 206-304 134-227 (515)
441 KOG2004|consensus 45.6 27 0.00058 36.7 4.1 42 222-268 553-596 (906)
442 COG0466 Lon ATP-dependent Lon 45.4 71 0.0015 33.6 7.1 102 222-326 465-585 (782)
443 COG1067 LonB Predicted ATP-dep 45.0 78 0.0017 33.1 7.5 120 48-177 227-382 (647)
444 PRK07471 DNA polymerase III su 44.9 60 0.0013 31.4 6.3 78 207-292 157-234 (365)
445 PF09820 AAA-ATPase_like: Pred 44.6 83 0.0018 29.1 7.1 20 153-172 220-239 (284)
446 TIGR02211 LolD_lipo_ex lipopro 44.2 81 0.0018 27.5 6.7 55 38-105 151-205 (221)
447 smart00534 MUTSac ATPase domai 44.0 1.4E+02 0.003 25.5 7.9 46 45-103 77-123 (185)
448 PRK13540 cytochrome c biogenes 43.6 1E+02 0.0023 26.5 7.2 55 38-106 137-191 (200)
449 COG1485 Predicted ATPase [Gene 43.3 54 0.0012 31.4 5.5 75 48-148 132-207 (367)
450 cd00338 Ser_Recombinase Serine 43.2 1.4E+02 0.003 23.6 7.4 58 4-61 23-80 (137)
451 PF13245 AAA_19: Part of AAA d 43.0 18 0.00039 26.2 1.9 35 198-232 17-53 (76)
452 cd03216 ABC_Carb_Monos_I This 43.0 66 0.0014 26.8 5.7 55 38-106 92-146 (163)
453 PRK11629 lolD lipoprotein tran 42.8 77 0.0017 28.1 6.4 55 39-106 156-210 (233)
454 PRK13543 cytochrome c biogenes 42.3 91 0.002 27.2 6.7 56 38-107 147-202 (214)
455 TIGR03864 PQQ_ABC_ATP ABC tran 42.1 1.1E+02 0.0025 27.0 7.4 56 38-106 142-197 (236)
456 smart00803 TAF TATA box bindin 41.7 41 0.00088 23.7 3.5 31 293-323 35-65 (65)
457 PRK05800 cobU adenosylcobinami 41.5 1.1E+02 0.0024 25.9 6.8 81 1-86 15-114 (170)
458 COG4555 NatA ABC-type Na+ tran 41.3 66 0.0014 28.6 5.3 53 40-106 145-197 (245)
459 COG4619 ABC-type uncharacteriz 40.7 41 0.00089 29.0 3.8 61 44-123 149-209 (223)
460 cd03231 ABC_CcmA_heme_exporter 40.5 1.2E+02 0.0027 26.1 7.2 56 38-107 135-190 (201)
461 PF07555 NAGidase: beta-N-acet 40.4 1.8E+02 0.0039 27.4 8.5 96 6-102 63-163 (306)
462 PRK08058 DNA polymerase III su 39.6 95 0.0021 29.4 6.8 55 207-266 126-180 (329)
463 cd03255 ABC_MJ0796_Lo1CDE_FtsE 39.5 73 0.0016 27.8 5.7 54 39-105 151-204 (218)
464 cd03240 ABC_Rad50 The catalyti 39.3 82 0.0018 27.4 5.9 62 41-122 134-196 (204)
465 cd03257 ABC_NikE_OppD_transpor 38.5 78 0.0017 27.8 5.7 55 38-105 155-209 (228)
466 cd03298 ABC_ThiQ_thiamine_tran 38.4 85 0.0018 27.2 5.9 56 38-106 138-193 (211)
467 PRK07399 DNA polymerase III su 38.2 68 0.0015 30.3 5.4 81 207-295 140-220 (314)
468 COG2874 FlaH Predicted ATPases 38.1 34 0.00074 30.5 3.1 70 30-111 107-176 (235)
469 cd03238 ABC_UvrA The excision 37.8 1.1E+02 0.0024 26.1 6.3 64 38-122 97-162 (176)
470 TIGR01189 ccmA heme ABC export 37.8 1.7E+02 0.0037 25.0 7.6 54 39-106 138-191 (198)
471 COG3829 RocR Transcriptional r 37.6 33 0.00072 34.7 3.3 112 2-131 283-424 (560)
472 KOG1803|consensus 37.6 16 0.00035 37.3 1.1 34 197-232 207-240 (649)
473 TIGR01184 ntrCD nitrate transp 37.1 88 0.0019 27.7 5.8 55 38-105 124-178 (230)
474 cd03267 ABC_NatA_like Similar 37.0 1.2E+02 0.0026 26.9 6.8 54 39-105 164-217 (236)
475 cd03247 ABCC_cytochrome_bd The 36.9 1.3E+02 0.0028 25.4 6.6 53 38-105 108-160 (178)
476 PF13175 AAA_15: AAA ATPase do 36.7 1.1E+02 0.0023 29.5 6.8 43 49-104 372-414 (415)
477 cd01124 KaiC KaiC is a circadi 36.6 1.1E+02 0.0025 25.5 6.3 26 35-60 84-109 (187)
478 smart00763 AAA_PrkA PrkA AAA d 36.4 42 0.00092 32.3 3.8 45 223-270 277-329 (361)
479 TIGR02315 ABC_phnC phosphonate 36.1 1.1E+02 0.0023 27.2 6.3 55 38-105 155-209 (243)
480 PRK11300 livG leucine/isoleuci 36.0 85 0.0018 28.2 5.6 55 38-105 163-217 (255)
481 PLN03210 Resistant to P. syrin 35.8 2.1E+02 0.0045 32.3 9.6 72 45-139 295-366 (1153)
482 KOG0871|consensus 35.6 91 0.002 25.8 4.9 65 296-360 50-119 (156)
483 cd01122 GP4d_helicase GP4d_hel 35.2 60 0.0013 29.5 4.5 26 36-61 130-155 (271)
484 PF04465 DUF499: Protein of un 35.2 47 0.001 36.6 4.3 26 32-61 89-114 (1035)
485 PF02269 TFIID-18kDa: Transcri 34.8 19 0.00042 27.4 1.0 55 292-347 34-88 (93)
486 COG1106 Predicted ATPases [Gen 34.7 32 0.00069 33.3 2.6 70 29-111 253-322 (371)
487 KOG2543|consensus 34.3 4E+02 0.0086 26.1 9.7 124 1-138 44-194 (438)
488 COG1119 ModF ABC-type molybden 34.2 1.7E+02 0.0036 26.7 6.9 63 37-111 180-242 (257)
489 cd03252 ABCC_Hemolysin The ABC 34.2 1.3E+02 0.0028 26.6 6.5 53 38-105 148-200 (237)
490 TIGR02012 tigrfam_recA protein 34.2 79 0.0017 30.0 5.2 70 31-100 118-190 (321)
491 cd03228 ABCC_MRP_Like The MRP 34.2 1.4E+02 0.003 25.0 6.3 53 39-106 107-159 (171)
492 cd03251 ABCC_MsbA MsbA is an e 34.1 1.6E+02 0.0034 26.0 7.0 53 38-105 148-200 (234)
493 cd03770 SR_TndX_transposase Se 33.9 1.5E+02 0.0033 24.0 6.3 57 4-61 27-83 (140)
494 KOG0990|consensus 33.9 3.1E+02 0.0067 26.2 8.7 86 37-141 115-207 (360)
495 cd03227 ABC_Class2 ABC-type Cl 33.7 86 0.0019 26.1 4.9 47 46-106 99-145 (162)
496 cd03233 ABC_PDR_domain1 The pl 33.6 1.2E+02 0.0026 26.3 6.0 54 38-103 128-181 (202)
497 TIGR03740 galliderm_ABC gallid 33.5 1.5E+02 0.0032 26.0 6.6 55 38-106 134-188 (223)
498 PRK13652 cbiO cobalt transport 33.4 1E+02 0.0022 28.3 5.7 57 37-106 146-202 (277)
499 COG1066 Sms Predicted ATP-depe 33.3 1.2E+02 0.0026 29.9 6.2 108 31-142 153-261 (456)
500 PF13335 Mg_chelatase_2: Magne 33.3 1.1E+02 0.0025 23.2 5.1 38 286-323 57-94 (96)
No 1
>KOG0733|consensus
Probab=100.00 E-value=1.7e-71 Score=531.78 Aligned_cols=341 Identities=35% Similarity=0.540 Sum_probs=301.1
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
++||+|||+|+|+||+.|++.++++.+.||||++|+++|+.|+..+|||+||||||+|.++|..++..+ .++++.+|
T Consensus 237 T~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreM---ErRiVaQL 313 (802)
T KOG0733|consen 237 TSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREM---ERRIVAQL 313 (802)
T ss_pred HHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHH---HHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999996644333 26999999
Q ss_pred HHhccCCCC----CCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCC
Q psy6770 81 LNQMDGFDQ----TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPD 156 (362)
Q Consensus 81 L~~ld~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~ 156 (362)
|+.||++.. +.+|+||++||+|+.+||||+|+||||..|.++.|+..+|.+|++..++++++..++|+.+||..|.
T Consensus 314 lt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTP 393 (802)
T KOG0733|consen 314 LTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTP 393 (802)
T ss_pred HHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCC
Confidence 999999853 3679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHhhHHHHHHHHHHhhcccc------cC--------------------------------------------------
Q psy6770 157 RISGADINAICQEVIMATNRAD------TL-------------------------------------------------- 180 (362)
Q Consensus 157 g~s~~di~~l~~~a~~~~~r~~------~~-------------------------------------------------- 180 (362)
||+|+|+.++|.+|..-|+++- ..
T Consensus 394 GfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~ 473 (802)
T KOG0733|consen 394 GFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSK 473 (802)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcCh
Confidence 9999999999999987765430 00
Q ss_pred --------------------CCcccCc-------------c-------chhhhhccCC---------------------C
Q psy6770 181 --------------------DPALLRP-------------G-------RLDRKIEFPL---------------------P 199 (362)
Q Consensus 181 --------------------~~~~i~~-------------~-------~l~~~~~~~~---------------------~ 199 (362)
.|+..++ | .|...+.||. |
T Consensus 474 E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GP 553 (802)
T KOG0733|consen 474 ELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGP 553 (802)
T ss_pred HHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCC
Confidence 0000000 1 1233444443 7
Q ss_pred hhhhhhh----------------------------------------------------------------------hhh
Q psy6770 200 DRRQKRL----------------------------------------------------------------------VFS 209 (362)
Q Consensus 200 ~~~~k~~----------------------------------------------------------------------~~~ 209 (362)
||||||+ ++|
T Consensus 554 PGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvN 633 (802)
T KOG0733|consen 554 PGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVN 633 (802)
T ss_pred CCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHH
Confidence 9999987 889
Q ss_pred hhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhc--cCCCCCCCCHHHHhhCCC
Q psy6770 210 TITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA--KMNLSDEVDLEDYVARPD 287 (362)
Q Consensus 210 ~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~--~~~~~~~~~~~~la~~~~ 287 (362)
+||++|||++++.+|+||+||||||.||||+|||||||+.+||++|+.++|..|+|.+++ +.++++++|++.||+.+.
T Consensus 634 qLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~ 713 (802)
T KOG0733|consen 634 QLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTK 713 (802)
T ss_pred HHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999 888889999999999865
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHh
Q psy6770 288 --RISGADINAICQEAGMHAVRENR----------------YIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFE 344 (362)
Q Consensus 288 --g~sgadi~~~~~~a~~~a~~~~~----------------~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~ 344 (362)
|||||||..+|++|++.|+++.- -.+++.||+.|+++++|++. .+.+.|+.+++.++
T Consensus 714 c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 714 CEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 99999999999999999998721 14678899999999999997 67788988887755
No 2
>KOG0730|consensus
Probab=100.00 E-value=1e-65 Score=498.48 Aligned_cols=336 Identities=37% Similarity=0.581 Sum_probs=308.1
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcC-CeEEEeccccccccccCCCCCCCcHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENS-PAIIFIDEIDAIATKRFDAQTGADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~-P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~ 79 (362)
+++++|+|+|.++.++.++++++++++.||++++++++|+.|..++ |+||||||+|+++++|..... ...++..+
T Consensus 232 t~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sq 307 (693)
T KOG0730|consen 232 TFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQ 307 (693)
T ss_pred HHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHH
Confidence 5799999999999999999999999999999999999999999999 999999999999999855433 34789999
Q ss_pred HHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCc
Q psy6770 80 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRIS 159 (362)
Q Consensus 80 lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s 159 (362)
+++.||++....+++|+++||+|+.||++++| ||||..++++.|+..+|.+|++.+.+.++..++.++..++..|.||+
T Consensus 308 lltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 308 LLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYV 386 (693)
T ss_pred HHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchh
Confidence 99999999888999999999999999999999 99999999999999999999999999999988899999999999999
Q ss_pred HhhHHHHHHHHHHhhccc---------ccCCCcccCc-------------c-------chhhhhccCC------------
Q psy6770 160 GADINAICQEVIMATNRA---------DTLDPALLRP-------------G-------RLDRKIEFPL------------ 198 (362)
Q Consensus 160 ~~di~~l~~~a~~~~~r~---------~~~~~~~i~~-------------~-------~l~~~~~~~~------------ 198 (362)
|+|+..+|.+|.+.+.+. ..+.|+.+++ | .|++.++||+
T Consensus 387 GaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ 466 (693)
T KOG0730|consen 387 GADLAALCREASLQATRRTLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGIS 466 (693)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCC
Confidence 999999999999888776 2233443332 3 3456788877
Q ss_pred ---------Chhhhhhh---------------------------------------------------------------
Q psy6770 199 ---------PDRRQKRL--------------------------------------------------------------- 206 (362)
Q Consensus 199 ---------~~~~~k~~--------------------------------------------------------------- 206 (362)
||||+|+.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~ 546 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS 546 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC
Confidence 78999886
Q ss_pred -------hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCH
Q psy6770 207 -------VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDL 279 (362)
Q Consensus 207 -------~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~ 279 (362)
|++++|++|||+...++|+||||||||+.||+|++||||||+.||||+||.+.|.+||+.++++++..+++|+
T Consensus 547 ~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl 626 (693)
T KOG0730|consen 547 SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDL 626 (693)
T ss_pred ccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhCchH-HHHHHHHhchH
Q psy6770 280 EDYVARPDRISGADINAICQEAGMHAVRENR--YIVLPKDFEKGYKKCAGMHA-VRENRYIVLPK 341 (362)
Q Consensus 280 ~~la~~~~g~sgadi~~~~~~a~~~a~~~~~--~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 341 (362)
+.||+.|+|||||||.++|++|++.|+++.. ..|...||++|++..+++.. .+.+.|+.+.+
T Consensus 627 ~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~ 691 (693)
T KOG0730|consen 627 EELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTSELLEKYEDFAA 691 (693)
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999875 57899999999999999876 67788877654
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.7e-52 Score=431.61 Aligned_cols=342 Identities=39% Similarity=0.630 Sum_probs=297.0
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||++||++++.+++.++++++.+++.|++++.++.+|+.|....|+||||||+|.+++++...... ...+++++|
T Consensus 226 T~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~---~~~~~~~~L 302 (733)
T TIGR01243 226 TLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGE---VEKRVVAQL 302 (733)
T ss_pred HHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcch---HHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999887543322 225788899
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
++.|+++....+++||++||.++.+|++++|+|||+..++++.|+.++|.+||+.+.....+..+.+++.+++.|.||++
T Consensus 303 l~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 303 LTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred HHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCH
Confidence 99999988888999999999999999999999999999999999999999999999988888778899999999999999
Q ss_pred hhHHHHHHHHHHhhcccc---------------------------------cCCCcccCc-------------c------
Q psy6770 161 ADINAICQEVIMATNRAD---------------------------------TLDPALLRP-------------G------ 188 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~---------------------------------~~~~~~i~~-------------~------ 188 (362)
+|+..+|++|.+.+.+.. ...|..++. +
T Consensus 383 adl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k 462 (733)
T TIGR01243 383 ADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVK 462 (733)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHH
Confidence 999999999987664421 011111110 1
Q ss_pred -chhhhhccC---------------------CChhhhhhh----------------------------------------
Q psy6770 189 -RLDRKIEFP---------------------LPDRRQKRL---------------------------------------- 206 (362)
Q Consensus 189 -~l~~~~~~~---------------------~~~~~~k~~---------------------------------------- 206 (362)
.|.+.+.|| .|||+||+.
T Consensus 463 ~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A 542 (733)
T TIGR01243 463 QELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA 542 (733)
T ss_pred HHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH
Confidence 122223222 278898886
Q ss_pred -------------------------------hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCC
Q psy6770 207 -------------------------------VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLP 255 (362)
Q Consensus 207 -------------------------------~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P 255 (362)
++++++++|+++.+.++++||+|||+|+.||||++||||||++|+|++|
T Consensus 543 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~P 622 (733)
T TIGR01243 543 RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPP 622 (733)
T ss_pred HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCc
Confidence 4566778888888888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc------------------CCCCCHHH
Q psy6770 256 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVREN------------------RYIVLPKD 317 (362)
Q Consensus 256 ~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~------------------~~~v~~~~ 317 (362)
+.++|.+||+.+++++++.+++|++.||+.|+|||||||+++|++|++.|+++. ...|+.+|
T Consensus 623 d~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 702 (733)
T TIGR01243 623 DEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRH 702 (733)
T ss_pred CHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHH
Confidence 999999999999999999999999999999999999999999999999999852 12689999
Q ss_pred HHHHHHHHhCchH-HHHHHHHhchHHHhh
Q psy6770 318 FEKGYKKCAGMHA-VRENRYIVLPKDFEK 345 (362)
Q Consensus 318 ~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 345 (362)
|++|+++++|+.. .+.++|++|.++|..
T Consensus 703 f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 703 FLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999986 677999999999863
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-48 Score=352.40 Aligned_cols=197 Identities=57% Similarity=0.859 Sum_probs=181.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+|||||+|+++++.|+.|.+|.|..+|+||+.+.++++|+.|+.++||||||||||+|+.+|.+.+++.+.++.+++.+|
T Consensus 199 TLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleL 278 (406)
T COG1222 199 TLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLEL 278 (406)
T ss_pred HHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999777777666666655555
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|++|
T Consensus 279 L~ql---------------------------------------------------------------------------- 282 (406)
T COG1222 279 LNQL---------------------------------------------------------------------------- 282 (406)
T ss_pred HHhc----------------------------------------------------------------------------
Confidence 5544
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
|||+..++|-||+||||||.||||+
T Consensus 283 -------------------------------------------------------DGFD~~~nvKVI~ATNR~D~LDPAL 307 (406)
T COG1222 283 -------------------------------------------------------DGFDPRGNVKVIMATNRPDILDPAL 307 (406)
T ss_pred -------------------------------------------------------cCCCCCCCeEEEEecCCccccChhh
Confidence 4555567788999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
|||||||++|+||+|+.++|.+||+.|.++|.+..++||+.||+.|+|+|||||+++|.+|+|.|+|+.+..|+++||++
T Consensus 308 LRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~ 387 (406)
T COG1222 308 LRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLK 387 (406)
T ss_pred cCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCc
Q psy6770 321 GYKKCAGM 328 (362)
Q Consensus 321 a~~~~~~~ 328 (362)
|.+++...
T Consensus 388 Av~KV~~~ 395 (406)
T COG1222 388 AVEKVVKK 395 (406)
T ss_pred HHHHHHhc
Confidence 99887653
No 5
>KOG0736|consensus
Probab=100.00 E-value=4.6e-46 Score=365.03 Aligned_cols=338 Identities=25% Similarity=0.388 Sum_probs=284.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+.+++++|.++|++++.++|.++...-.+.+|..+..+|..|+..+|+|||+-.+|.+..++.+ +.+-.....+..+
T Consensus 445 ~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ 521 (953)
T KOG0736|consen 445 TTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHL 521 (953)
T ss_pred HHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHH
Confidence 3578999999999999999999999888899999999999999999999999999999865532 3344445555555
Q ss_pred HHhccCCC-CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCc
Q psy6770 81 LNQMDGFD-QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRIS 159 (362)
Q Consensus 81 L~~ld~l~-~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s 159 (362)
+. ++.+. ...+++||++|+..+++++.+++ -|-..|.++.|+.++|.+|++.++....+..++.+..++.+|.||+
T Consensus 522 ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 522 LS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFS 598 (953)
T ss_pred Hh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCC
Confidence 55 33333 56789999999999999999999 8889999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHhhcc---cc---------------------------------------cCC---CcccCc---cchh
Q psy6770 160 GADINAICQEVIMATNR---AD---------------------------------------TLD---PALLRP---GRLD 191 (362)
Q Consensus 160 ~~di~~l~~~a~~~~~r---~~---------------------------------------~~~---~~~i~~---~~l~ 191 (362)
.+++.+++......+.. .. .+. -+.+.+ |+|+
T Consensus 599 ~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLe 678 (953)
T KOG0736|consen 599 FGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLE 678 (953)
T ss_pred HHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHH
Confidence 99999988655221110 00 000 011111 3432
Q ss_pred -------hhhccCC--------------------Chhhhhhh--------------------------------------
Q psy6770 192 -------RKIEFPL--------------------PDRRQKRL-------------------------------------- 206 (362)
Q Consensus 192 -------~~~~~~~--------------------~~~~~k~~-------------------------------------- 206 (362)
..+.+|+ |||+|||+
T Consensus 679 evK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFe 758 (953)
T KOG0736|consen 679 EVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFE 758 (953)
T ss_pred HHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHH
Confidence 3455555 79999987
Q ss_pred ----------------------------------hhhhhhhhhhhhh--ccCCeEEEEecCCCCCCCccccCCCCcceeE
Q psy6770 207 ----------------------------------VFSTITAKMNFML--NIGNLQVIMATNRADTLDPALLRPGRLDRKI 250 (362)
Q Consensus 207 ----------------------------------~~~~~l~~~~~~~--~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i 250 (362)
|++|+|+|||+++ ..++||||+||||||.||||++||||||+.+
T Consensus 759 rAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLv 838 (953)
T KOG0736|consen 759 RARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLV 838 (953)
T ss_pred HhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeE
Confidence 8899999999998 5678999999999999999999999999999
Q ss_pred EecCC-CHHHHHHHHHHHhccCCCCCCCCHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHhcC-----------------C
Q psy6770 251 EFPLP-DRRQKRLVFSTITAKMNLSDEVDLEDYVARP-DRISGADINAICQEAGMHAVRENR-----------------Y 311 (362)
Q Consensus 251 ~~~~P-~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~-~g~sgadi~~~~~~a~~~a~~~~~-----------------~ 311 (362)
|++.+ +.+.+..+++...+++.++.++|+.++|+.+ ..|||||+.++|.+|++.|+++-. -
T Consensus 839 yvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v 918 (953)
T KOG0736|consen 839 YVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSV 918 (953)
T ss_pred EecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceE
Confidence 99998 5577889999999999999999999999986 889999999999999999998611 2
Q ss_pred CCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHh
Q psy6770 312 IVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFE 344 (362)
Q Consensus 312 ~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~ 344 (362)
.|+++||.++++++.|+.+ ++..+|+.++.+|.
T Consensus 919 ~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 919 RVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred EEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 5899999999999999998 78999999999885
No 6
>KOG0734|consensus
Probab=100.00 E-value=6.5e-46 Score=351.24 Aligned_cols=352 Identities=27% Similarity=0.352 Sum_probs=285.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+|||||+|+|.|+|||..++|+|...|+|.+.++++.+|..|+.++||||||||||++.++|... .....++.+++|
T Consensus 351 TlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQL 427 (752)
T KOG0734|consen 351 TLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQL 427 (752)
T ss_pred hHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999998432 222568999999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|.+|||+..+.+|+||++||.|+++|+||.||||||+.|.+|.||...|.+|++.++.+..+..++|+.-+|..|.||+|
T Consensus 428 LvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsG 507 (752)
T KOG0734|consen 428 LVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSG 507 (752)
T ss_pred HHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
+||+++++.|+..+.... ...+.-..|+...+..++..+.|++++++-...+..|++.++.+|-.-|+....|.+|.
T Consensus 508 AdLaNlVNqAAlkAa~dg---a~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaT 584 (752)
T KOG0734|consen 508 ADLANLVNQAALKAAVDG---AEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKAT 584 (752)
T ss_pred HHHHHHHHHHHHHHHhcC---cccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCcccccee
Confidence 999999999988664433 23345566777777778888899999999999999999999999999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC--CCCCHHHHhhCCCCCCHH--HHHHHHHHHHHHHHHhc--CCCCC
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS--DEVDLEDYVARPDRISGA--DINAICQEAGMHAVREN--RYIVL 314 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~--~~~~~~~la~~~~g~sga--di~~~~~~a~~~a~~~~--~~~v~ 314 (362)
+-|.--..-+...+|+.+.-..--++++..+.+. ..+.-+.|...-.-.||| |+.+...-| .+.+..- .+.|.
T Consensus 585 ImPRG~sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA-~~MVt~fGMSd~vG 663 (752)
T KOG0734|consen 585 IMPRGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLA-RRMVTKFGMSDKVG 663 (752)
T ss_pred eccCCccccceeecCccchhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHH-HHHHHHcCcccccc
Confidence 9998888888888998865554445555555443 455455555443334444 887654433 2223221 12223
Q ss_pred HHHHHHHHHH--HhC-chHHHHHHHHhchHHHhhhccccccccccccc
Q psy6770 315 PKDFEKGYKK--CAG-MHAVRENRYIVLPKDFEKGYKNNTKKDESEHE 359 (362)
Q Consensus 315 ~~~~~~a~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (362)
.-.+...-.. ..| +....+.++..+.++.|.+++..++++.-||+
T Consensus 664 ~v~~~~~~~~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~ 711 (752)
T KOG0734|consen 664 PVTLSAEDNSSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELH 711 (752)
T ss_pred ceeeeccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222221 111 11246788999999999999999999998886
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-41 Score=336.19 Aligned_cols=329 Identities=37% Similarity=0.521 Sum_probs=284.6
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+++++++|++ +..++.+++....++|.|+++..++.+|+.++..+|+++++|++|.+.+.+.. .......+++.++
T Consensus 32 t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~---~~~~~~~~v~~~l 107 (494)
T COG0464 32 TLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSS---DQGEVERRVVAQL 107 (494)
T ss_pred hHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCccc---cccchhhHHHHHH
Confidence 3688999999 88779999999999999999999999999999999999999999999999865 2233446889999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
+..+++++... +++++.||.+..+|+++++||||+..++++.|+...+.+++..+........+.++..++..+.|+++
T Consensus 108 ~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 186 (494)
T COG0464 108 LALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSG 186 (494)
T ss_pred HHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccH
Confidence 99999988445 99999999999999999999999999999999999999999999988877777899999999999999
Q ss_pred hhHHHHHHHHHHhhcccc--------------------cCCCc--------ccC---ccc-------hhhhhcc------
Q psy6770 161 ADINAICQEVIMATNRAD--------------------TLDPA--------LLR---PGR-------LDRKIEF------ 196 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~--------------------~~~~~--------~i~---~~~-------l~~~~~~------ 196 (362)
+++..+|.++...+.+.. .+.++ .+. .++ +.+.+++
T Consensus 187 ~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e 266 (494)
T COG0464 187 ADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPE 266 (494)
T ss_pred HHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChH
Confidence 999999988876655442 01111 011 011 1222222
Q ss_pred ---------------CCChhhhhhh-------------------------------------------------------
Q psy6770 197 ---------------PLPDRRQKRL------------------------------------------------------- 206 (362)
Q Consensus 197 ---------------~~~~~~~k~~------------------------------------------------------- 206 (362)
-.||||||++
T Consensus 267 ~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs 346 (494)
T COG0464 267 LFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred HHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhh
Confidence 2278898886
Q ss_pred ---------------hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC
Q psy6770 207 ---------------VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 271 (362)
Q Consensus 207 ---------------~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~ 271 (362)
++++++++|++.....+|+||+|||+||.||+|++||||||++|+|++|+..+|.+||+.++++.
T Consensus 347 ~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 347 LASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred hhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 67888999999999999999999999999999999999999999999999999999999999965
Q ss_pred CC--CCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhCchHHHHHHHHhc
Q psy6770 272 NL--SDEVDLEDYVARPDRISGADINAICQEAGMHAVREN-RYIVLPKDFEKGYKKCAGMHAVRENRYIVL 339 (362)
Q Consensus 272 ~~--~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~-~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (362)
.. ..++|++.+++.|+||||+||+.+|++|++.++++. ...++.+||..|++..+|+.. |++|
T Consensus 427 ~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~~~-----~~~~ 492 (494)
T COG0464 427 KPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKPSVT-----YEEW 492 (494)
T ss_pred CCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCCCC-----hhhc
Confidence 54 478999999999999999999999999999999998 789999999999999999865 6665
No 8
>KOG0735|consensus
Probab=100.00 E-value=1.3e-41 Score=331.07 Aligned_cols=307 Identities=25% Similarity=0.370 Sum_probs=255.6
Q ss_pred CcHHHHHHhhhC----CcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTELV----TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e~~----~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|-|+++|+++.. +++..++|+.+.++-.....+.++.+|..+-.++|+||++|++|.|+... +..++.+......
T Consensus 445 T~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s-~~e~~q~~~~~~r 523 (952)
T KOG0735|consen 445 TNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS-SNENGQDGVVSER 523 (952)
T ss_pred hHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC-cccCCcchHHHHH
Confidence 458999998875 56777999999877666667889999999999999999999999999843 3334445555566
Q ss_pred HHHHHHhccC--CCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHh
Q psy6770 77 LLELLNQMDG--FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVA 153 (362)
Q Consensus 77 l~~lL~~ld~--l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~ 153 (362)
+..+|+++-. .+.+..+.+|++.+....++|-+..|++|+.++.++.|+..+|..|+...+.+.... ..-|++-++.
T Consensus 524 la~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~ 603 (952)
T KOG0735|consen 524 LAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSV 603 (952)
T ss_pred HHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 6666654432 234556899999999999999999999999999999999999999999998876522 1124556999
Q ss_pred cCCCCcHhhHHHHHHHHHHhhccc--ccC----------------CC-----------cccCc----------cchhhhh
Q psy6770 154 RPDRISGADINAICQEVIMATNRA--DTL----------------DP-----------ALLRP----------GRLDRKI 194 (362)
Q Consensus 154 ~t~g~s~~di~~l~~~a~~~~~r~--~~~----------------~~-----------~~i~~----------~~l~~~~ 194 (362)
.|.||...|+..++..|...+... +.. .| .-++. +-|++.+
T Consensus 604 ~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i 683 (952)
T KOG0735|consen 604 KTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVI 683 (952)
T ss_pred hcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHH
Confidence 999999999999999998776621 111 11 11221 2346677
Q ss_pred ccCC---------------------Chhhhhhh-----------------------------------------------
Q psy6770 195 EFPL---------------------PDRRQKRL----------------------------------------------- 206 (362)
Q Consensus 195 ~~~~---------------------~~~~~k~~----------------------------------------------- 206 (362)
+||. ||||||+.
T Consensus 684 ~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCi 763 (952)
T KOG0735|consen 684 EWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCI 763 (952)
T ss_pred hccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeE
Confidence 7766 69999986
Q ss_pred -----------------------hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHH
Q psy6770 207 -----------------------VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263 (362)
Q Consensus 207 -----------------------~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i 263 (362)
|+|++|++|||.++-++|+|+|||.|||.||||++||||+|+.+++++|++.+|.+|
T Consensus 764 LFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~i 843 (952)
T KOG0735|consen 764 LFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEI 843 (952)
T ss_pred EEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh
Q psy6770 264 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRE 308 (362)
Q Consensus 264 ~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~ 308 (362)
++.+..+...+.++|++.+|..|+|||||||+.++..|-+.|+++
T Consensus 844 l~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 844 LQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999888899999999999999999999999999999999876
No 9
>KOG0738|consensus
Probab=100.00 E-value=4.1e-42 Score=315.28 Aligned_cols=214 Identities=35% Similarity=0.529 Sum_probs=191.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+|||||+|.|+|.+||+|+.+.+.++|-||||+.++-+|+.|+-++|++|||||||+||..|++. +.+...+++.++|
T Consensus 259 TlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsEL 336 (491)
T KOG0738|consen 259 TLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSEL 336 (491)
T ss_pred HHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999998543 3444557888888
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|.+|||+...
T Consensus 337 LvQmDG~~~t---------------------------------------------------------------------- 346 (491)
T KOG0738|consen 337 LVQMDGVQGT---------------------------------------------------------------------- 346 (491)
T ss_pred HHHhhccccc----------------------------------------------------------------------
Confidence 8888874211
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
+++.+-|+|+||||.||.||.|+
T Consensus 347 ---------------------------------------------------------~e~~k~VmVLAATN~PWdiDEAl 369 (491)
T KOG0738|consen 347 ---------------------------------------------------------LENSKVVMVLAATNFPWDIDEAL 369 (491)
T ss_pred ---------------------------------------------------------cccceeEEEEeccCCCcchHHHH
Confidence 00123479999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc-----------
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVREN----------- 309 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~----------- 309 (362)
+| ||.++||+|||+.++|..+++..++.....++++++.||++++||||+||.++|++|+|.++|..
T Consensus 370 rR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~ 447 (491)
T KOG0738|consen 370 RR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQ 447 (491)
T ss_pred HH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhh
Confidence 99 99999999999999999999999999999999999999999999999999999999999999851
Q ss_pred ------CCCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhh
Q psy6770 310 ------RYIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEK 345 (362)
Q Consensus 310 ------~~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 345 (362)
..+|++.||+.|+.+++|++. .+..+|++|..+|+.
T Consensus 448 lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 448 LAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred hhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 147999999999999999997 889999999999974
No 10
>KOG0727|consensus
Probab=100.00 E-value=2.7e-39 Score=281.93 Aligned_cols=206 Identities=81% Similarity=1.179 Sum_probs=180.6
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+|||||+|++..+.||.|.+|.|..+|.||+.+.++.+|+.|+.++|+||||||+|+|..+|-+++++.+.+..+++.++
T Consensus 203 tml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~el 282 (408)
T KOG0727|consen 203 TMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIEL 282 (408)
T ss_pred HHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999998777665555555544444444
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|
T Consensus 283 l------------------------------------------------------------------------------- 283 (408)
T KOG0727|consen 283 L------------------------------------------------------------------------------- 283 (408)
T ss_pred H-------------------------------------------------------------------------------
Confidence 4
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
++|||+....+|-||+|||+.+.||||+
T Consensus 284 ----------------------------------------------------nqmdgfdq~~nvkvimatnradtldpal 311 (408)
T KOG0727|consen 284 ----------------------------------------------------NQMDGFDQTTNVKVIMATNRADTLDPAL 311 (408)
T ss_pred ----------------------------------------------------HhccCcCcccceEEEEecCcccccCHhh
Confidence 4555555556778999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
+||||+|++|.||+||..+++-+|..+.+++.+.+++|++.++.+.+..|||||.++|++|+|.|+|+++..|...||++
T Consensus 312 lrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ 391 (408)
T KOG0727|consen 312 LRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEK 391 (408)
T ss_pred cCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877766666665
Q ss_pred HHHHHhCchHHHHHHHHhchHHHhhhcccccccccccccccC
Q psy6770 321 GYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362 (362)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (362)
+ ++...+|....|||||
T Consensus 392 a-------------------------y~~~vk~~~~~~~fyk 408 (408)
T KOG0727|consen 392 A-------------------------YKTVVKKDETQFEFYK 408 (408)
T ss_pred H-------------------------HHhhcCCcccchhccC
Confidence 5 5555667788888886
No 11
>KOG0733|consensus
Probab=100.00 E-value=1.9e-39 Score=311.71 Aligned_cols=175 Identities=39% Similarity=0.661 Sum_probs=165.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+|||||+|+|.|++|++|.+.+++++|+||||+.++.+|..|+..+||||||||+|++++.|++..++ ...+++|+|
T Consensus 559 TLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~---~s~RvvNqL 635 (802)
T KOG0733|consen 559 TLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSS---VSSRVVNQL 635 (802)
T ss_pred HHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCch---hHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999766533 346999999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHc--cCCCCCcCCHHHHHhcCC--
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA--KMNLSDEVDLEDYVARPD-- 156 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~--~~~~~~~~dl~~la~~t~-- 156 (362)
|++|||+....+|+||++||+|+-||||++||||||+.+++++|+.++|..|++.+.+ +.++..++|++.++..+.
T Consensus 636 LtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~ 715 (802)
T KOG0733|consen 636 LTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCE 715 (802)
T ss_pred HHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999 667889999999999866
Q ss_pred CCcHhhHHHHHHHHHHhhcccc
Q psy6770 157 RISGADINAICQEVIMATNRAD 178 (362)
Q Consensus 157 g~s~~di~~l~~~a~~~~~r~~ 178 (362)
||||+||..+|++|...+.+..
T Consensus 716 gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 716 GFTGADLAALVREASILALRES 737 (802)
T ss_pred CCchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999888763
No 12
>KOG0730|consensus
Probab=100.00 E-value=2.4e-39 Score=314.91 Aligned_cols=190 Identities=41% Similarity=0.658 Sum_probs=173.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+++|||+|++++++|+.|++.+++++|+||||+.|+.+|+.|++.+||||||||||+++..|++..+ ....|+++++
T Consensus 482 T~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqL 558 (693)
T KOG0730|consen 482 TLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQL 558 (693)
T ss_pred HHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999964333 4557999999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|++|||+....+|+||++||+|+.||+|++||||||..|++|+|+.+.|.+|++.++++.+..+++|+..||+.|.||||
T Consensus 559 LtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SG 638 (693)
T KOG0730|consen 559 LTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSG 638 (693)
T ss_pred HHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCCh
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhh
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKI 194 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~ 194 (362)
+||..+|++|...+.+.+- +...+....+.+..
T Consensus 639 Ael~~lCq~A~~~a~~e~i-~a~~i~~~hf~~al 671 (693)
T KOG0730|consen 639 AEIVAVCQEAALLALRESI-EATEITWQHFEEAL 671 (693)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccccccHHHHHHHH
Confidence 9999999999999988763 34445444444433
No 13
>KOG0739|consensus
Probab=100.00 E-value=2.2e-38 Score=281.79 Aligned_cols=210 Identities=29% Similarity=0.445 Sum_probs=183.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+|+|.|.+..||+|++|++.++|+||||+.++.+|+.|+.++|+||||||||++|+.|+.+.+ ...+++..+|
T Consensus 180 SYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs---easRRIKTEf 256 (439)
T KOG0739|consen 180 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES---EASRRIKTEF 256 (439)
T ss_pred HHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch---HHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999988843322 2234444555
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|-+|+
T Consensus 257 LVQMq--------------------------------------------------------------------------- 261 (439)
T KOG0739|consen 257 LVQMQ--------------------------------------------------------------------------- 261 (439)
T ss_pred HHhhh---------------------------------------------------------------------------
Confidence 54444
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhh-ccCCeEEEEecCCCCCCCcc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFML-NIGNLQVIMATNRADTLDPA 239 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~-~~~~v~vi~aTn~~~~lD~a 239 (362)
|+. ..++|+|++|||.||.||.|
T Consensus 262 --------------------------------------------------------GVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 262 --------------------------------------------------------GVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred --------------------------------------------------------ccccCCCceEEEecCCCchhHHHH
Confidence 432 23468999999999999999
Q ss_pred ccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC--------
Q psy6770 240 LLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVRENR-------- 310 (362)
Q Consensus 240 ~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~-------- 310 (362)
+.| ||+++||+|||+..+|..+|+.++++.++. .+.|+..|++.|+||||+||.-+|++|.|..+|.-+
T Consensus 286 IRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v 363 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKV 363 (439)
T ss_pred HHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhcc
Confidence 999 999999999999999999999999998876 677999999999999999999999999999998711
Q ss_pred --------------------------------------CCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhhh
Q psy6770 311 --------------------------------------YIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEKG 346 (362)
Q Consensus 311 --------------------------------------~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 346 (362)
.+|++.||.+++.+.+|++. .+..++++++++|++.
T Consensus 364 ~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 364 SGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQE 438 (439)
T ss_pred CCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhccC
Confidence 27999999999999999997 6789999999999863
No 14
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=298.46 Aligned_cols=254 Identities=33% Similarity=0.500 Sum_probs=222.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+|||||+|+|.++||+++|+|+|...|+|-+.+++|.+|..|++++||||||||||++...|+.+.++..++..+.++++
T Consensus 197 TLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQl 276 (596)
T COG0465 197 TLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL 276 (596)
T ss_pred HHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999766666667778999999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|.+||++..+..|+++++||+|+-+|+|++||||||+.|.++.|+...|.+|++.|.++.++..++++..+|..|.||++
T Consensus 277 LvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsG 356 (596)
T COG0465 277 LVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSG 356 (596)
T ss_pred HhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCccc
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
+|+.+++++|+..+.|.+ ...+....+...++..+....+|.+++++-...+..+++.++.++-......+.+.+..
T Consensus 357 AdL~nl~NEAal~aar~n---~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~Kvt 433 (596)
T COG0465 357 ADLANLLNEAALLAARRN---KKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVT 433 (596)
T ss_pred chHhhhHHHHHHHHHHhc---CeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceee
Confidence 999999999999988876 33456667777777766666777778888888888888887766666666666666666
Q ss_pred cCCCCcceeEEecCCCH
Q psy6770 241 LRPGRLDRKIEFPLPDR 257 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~ 257 (362)
+=|..--.-..+.+|..
T Consensus 434 IiPrG~alG~t~~~Pe~ 450 (596)
T COG0465 434 IIPRGRALGYTLFLPEE 450 (596)
T ss_pred eccCchhhcchhcCCcc
Confidence 66645444455666665
No 15
>KOG0726|consensus
Probab=100.00 E-value=1.3e-36 Score=269.78 Aligned_cols=197 Identities=50% Similarity=0.885 Sum_probs=177.6
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+|||+|+|+...+.|+.+-+|+++.+|.|++.+.++++|+.|..++|+|+||||||++..+|-+++++...++.+.+.
T Consensus 233 TLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmL-- 310 (440)
T KOG0726|consen 233 TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML-- 310 (440)
T ss_pred hHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHH--
Confidence 589999999999999999999999999999999999999999999999999999999998885555554443333333
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 311 -------------------------------------------------------------------------------- 310 (440)
T KOG0726|consen 311 -------------------------------------------------------------------------------- 310 (440)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
++|+++|||+.+++|-||+|||+.+.||||+
T Consensus 311 -------------------------------------------------ELLNQldGFdsrgDvKvimATnrie~LDPaL 341 (440)
T KOG0726|consen 311 -------------------------------------------------ELLNQLDGFDSRGDVKVIMATNRIETLDPAL 341 (440)
T ss_pred -------------------------------------------------HHHHhccCccccCCeEEEEecccccccCHhh
Confidence 3555666777778889999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
+||||+|++|.|++||...++.||..|.+++.++.+++++.+...-+.+|||||+++|.+|++.|+|+.+..|+++||.+
T Consensus 342 iRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~k 421 (440)
T KOG0726|consen 342 IRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKK 421 (440)
T ss_pred cCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCc
Q psy6770 321 GYKKCAGM 328 (362)
Q Consensus 321 a~~~~~~~ 328 (362)
|.+++-.+
T Consensus 422 a~e~V~~~ 429 (440)
T KOG0726|consen 422 AKEKVLYK 429 (440)
T ss_pred HHHHHHHh
Confidence 98876443
No 16
>KOG0736|consensus
Probab=100.00 E-value=6e-35 Score=287.03 Aligned_cols=177 Identities=34% Similarity=0.603 Sum_probs=163.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+|||||+|.|+...|++|.+.+++++|+||||+++|++|++|+..+||||||||+|+++|+|+..+. +...+.|++++|
T Consensus 719 TLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD-SGGVMDRVVSQL 797 (953)
T KOG0736|consen 719 TLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD-SGGVMDRVVSQL 797 (953)
T ss_pred HHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC-ccccHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999965433 344678999999
Q ss_pred HHhccCCC--CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCC-HHHHHHHHHHHHccCCCCCcCCHHHHHhcC-C
Q psy6770 81 LNQMDGFD--QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD-RRQKRLVFSTITAKMNLSDEVDLEDYVARP-D 156 (362)
Q Consensus 81 L~~ld~l~--~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~-~~~r~~il~~~~~~~~~~~~~dl~~la~~t-~ 156 (362)
|.+||++. ....|+||++||+|+.||||++||||||+-+++++++ .+.+..+++...++..++.++|+.++|+.+ .
T Consensus 798 LAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 798 LAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPP 877 (953)
T ss_pred HHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCc
Confidence 99999996 5678999999999999999999999999999999986 566899999999999999999999999986 6
Q ss_pred CCcHhhHHHHHHHHHHhhcccc
Q psy6770 157 RISGADINAICQEVIMATNRAD 178 (362)
Q Consensus 157 g~s~~di~~l~~~a~~~~~r~~ 178 (362)
.|||+|+-++|.+|.++|+++.
T Consensus 878 ~~TGADlYsLCSdA~l~AikR~ 899 (953)
T KOG0736|consen 878 NMTGADLYSLCSDAMLAAIKRT 899 (953)
T ss_pred CCchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998763
No 17
>KOG0728|consensus
Probab=100.00 E-value=2e-34 Score=251.23 Aligned_cols=179 Identities=50% Similarity=0.824 Sum_probs=173.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
++||+|+|++..|.||.|++|.+..+|+||+.+.++++|-.|+.++|+|||+||||++...|..++++.+++..+...++
T Consensus 195 tLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlel 274 (404)
T KOG0728|consen 195 TLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLEL 274 (404)
T ss_pred hHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|+++|++...+++-||.+||+.+-+|||++||||.|+.|+||+|+.+.|.+|++.+.++.++..++++..+|+...|.||
T Consensus 275 lnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasg 354 (404)
T KOG0728|consen 275 LNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASG 354 (404)
T ss_pred HHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccccc
Q psy6770 161 ADINAICQEVIMATNRADT 179 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~ 179 (362)
++++.+|.+|-+.+.|...
T Consensus 355 aevk~vcteagm~alrerr 373 (404)
T KOG0728|consen 355 AEVKGVCTEAGMYALRERR 373 (404)
T ss_pred chhhhhhhhhhHHHHHHhh
Confidence 9999999999999987653
No 18
>KOG0731|consensus
Probab=100.00 E-value=5.9e-34 Score=284.95 Aligned_cols=253 Identities=36% Similarity=0.530 Sum_probs=197.5
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCC-CCCCCcHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFD-AQTGADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~-~~~~~~~~~~~~l~~ 79 (362)
+|||||+|+|.|+||+++++|+|...++|....+++.+|..|+.++||||||||||++...|.+ ...+.+.+-...+++
T Consensus 358 TLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQ 437 (774)
T KOG0731|consen 358 TLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQ 437 (774)
T ss_pred HHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999942 333445556789999
Q ss_pred HHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCC
Q psy6770 80 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRI 158 (362)
Q Consensus 80 lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~ 158 (362)
+|.+||++..+..|+|+++||+|+-+|+|++||||||+.|.++.|+..+|.+|++.|+++.+.. +++++.++|..|.||
T Consensus 438 ll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf 517 (774)
T KOG0731|consen 438 LLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGF 517 (774)
T ss_pred HHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCC
Confidence 9999999988889999999999999999999999999999999999999999999999999885 778999999999999
Q ss_pred cHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCc
Q psy6770 159 SGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDP 238 (362)
Q Consensus 159 s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~ 238 (362)
+|+||.++|++|+..+.|... ..+....+...+++....-..++.++..-....-++++.++.++-.-+-+.+.+..
T Consensus 518 ~gadl~n~~neaa~~a~r~~~---~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~k 594 (774)
T KOG0731|consen 518 SGADLANLCNEAALLAARKGL---REIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLK 594 (774)
T ss_pred cHHHHHhhhhHHHHHHHHhcc---CccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCccee
Confidence 999999999999999888642 22333344444443222213333333333333344444444333323344444444
Q ss_pred cccCCCCcceeEEecCCCH
Q psy6770 239 ALLRPGRLDRKIEFPLPDR 257 (362)
Q Consensus 239 a~~RpgRfd~~i~~~~P~~ 257 (362)
-.+=||. ..-+..-+|+.
T Consensus 595 vsIiPGq-alG~a~~~P~~ 612 (774)
T KOG0731|consen 595 VSIIPGQ-ALGYAQYLPTD 612 (774)
T ss_pred EEeccCC-ccceEEECCcc
Confidence 4455566 55555555544
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.6e-32 Score=268.23 Aligned_cols=206 Identities=20% Similarity=0.279 Sum_probs=171.0
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|++|+++|+++|++|+.++++.+.++|+|+++++++.+|+.|+..+||||||||||.++.++... +......+++++
T Consensus 273 TllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~- 349 (489)
T CHL00195 273 SLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLAT- 349 (489)
T ss_pred HHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHH-
Confidence 68999999999999999999999999999999999999999999999999999999987543211 011111222222
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 350 -------------------------------------------------------------------------------- 349 (489)
T CHL00195 350 -------------------------------------------------------------------------------- 349 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
+++.|+. ...+|+||+|||+|+.||||+
T Consensus 350 --------------------------------------------------lL~~l~~--~~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 350 --------------------------------------------------FITWLSE--KKSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred --------------------------------------------------HHHHHhc--CCCceEEEEecCChhhCCHHH
Confidence 2222221 124689999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC--CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS--DEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDF 318 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~--~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~ 318 (362)
+||||||+.|+|++|+.++|.+||+.|+++.... .+.|++.||+.|+|||||||+++|.+|+..|+.++ .+++.+||
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl 456 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDI 456 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHH
Confidence 9999999999999999999999999999887543 47899999999999999999999999999998876 57899999
Q ss_pred HHHHHHHhCchH---HHHHHHHhchHH
Q psy6770 319 EKGYKKCAGMHA---VRENRYIVLPKD 342 (362)
Q Consensus 319 ~~a~~~~~~~~~---~~~~~~~~~~~~ 342 (362)
+.|++.+.|+.. +..+.+++|...
T Consensus 457 ~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 457 LLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 999999999764 345667777653
No 20
>KOG0735|consensus
Probab=100.00 E-value=2e-32 Score=267.21 Aligned_cols=174 Identities=35% Similarity=0.609 Sum_probs=163.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
++||.|+|..+++.||+|.+.+++++|+|.||+++|.+|.+|+..+|||+||||+|+++|+|+-.+++ ...|++|++
T Consensus 715 T~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG---VTDRVVNQl 791 (952)
T KOG0735|consen 715 TLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG---VTDRVVNQL 791 (952)
T ss_pred HHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC---chHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999544444 345999999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|++|||...-.+|.++++|++|+.||||++||||+|+.+++++|+..+|.+|++.+........++|++.+|..|+||||
T Consensus 792 LTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 792 LTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTG 871 (952)
T ss_pred HHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCch
Confidence 99999998889999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred hhHHHHHHHHHHhhccc
Q psy6770 161 ADINAICQEVIMATNRA 177 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~ 177 (362)
+|+..++-.|.+.+.+.
T Consensus 872 ADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 872 ADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999998877654
No 21
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.98 E-value=8.2e-32 Score=286.45 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=104.6
Q ss_pred hhhhhhhhhhh---ccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh--ccCCCCC-CCCHHHH
Q psy6770 209 STITAKMNFML---NIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT--AKMNLSD-EVDLEDY 282 (362)
Q Consensus 209 ~~~l~~~~~~~---~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l--~~~~~~~-~~~~~~l 282 (362)
++++++|++.. ...+|+||||||+|+.||||++||||||++|+|++|+..+|.+++..++ +++.+.. .+|++.+
T Consensus 1755 ~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~L 1834 (2281)
T CHL00206 1755 GLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGF 1834 (2281)
T ss_pred HHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHH
Confidence 44556666553 3457999999999999999999999999999999999999999998654 5555553 3689999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 283 a~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
|+.|.|||||||+++|++|++.|++++...|+.+++..|+.+....
T Consensus 1835 A~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1835 GSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988654
No 22
>KOG0652|consensus
Probab=99.97 E-value=1.1e-31 Score=235.37 Aligned_cols=179 Identities=49% Similarity=0.823 Sum_probs=173.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+++|+|.|...++.|+.+.+.++...|+|++.+.++..|..|+..+|+||||||+|+|..+|.++....+.+..+...++
T Consensus 219 TlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLEL 298 (424)
T KOG0652|consen 219 TLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 298 (424)
T ss_pred HHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999888888889999999999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|+++||+.++..|-||++||+.+-+|||++|+||+|+.|+||.|+.+.|.+|++.|.+++++.+++++++++..|++|.|
T Consensus 299 LNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNG 378 (424)
T KOG0652|consen 299 LNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNG 378 (424)
T ss_pred HHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccccc
Q psy6770 161 ADINAICQEVIMATNRADT 179 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~ 179 (362)
++.+++|-+|-+.+.|...
T Consensus 379 AQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 379 AQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred hhheeeehhhhHHHHhccc
Confidence 9999999999999988764
No 23
>KOG0737|consensus
Probab=99.97 E-value=2.1e-31 Score=244.63 Aligned_cols=172 Identities=33% Similarity=0.539 Sum_probs=160.5
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
++||+|+|.+.|++|++|+.+.+.++|+||+++.++.+|..|...+||||||||+|++.+.|. ++.+.....+.++|
T Consensus 141 TmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eF 217 (386)
T KOG0737|consen 141 TMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEF 217 (386)
T ss_pred HHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999882 34445567888999
Q ss_pred HHhccCCCCCCC--eEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCC
Q psy6770 81 LNQMDGFDQTTN--VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 158 (362)
Q Consensus 81 L~~ld~l~~~~~--v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~ 158 (362)
+..+||+..+.+ |+|+|+||+|.++|.|++| |+..++++++|+..+|..|++..++..++.+++|+..+|..|.||
T Consensus 218 M~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~Gy 295 (386)
T KOG0737|consen 218 MALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGY 295 (386)
T ss_pred HHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCC
Confidence 999999976654 9999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHhhccc
Q psy6770 159 SGADINAICQEVIMATNRA 177 (362)
Q Consensus 159 s~~di~~l~~~a~~~~~r~ 177 (362)
||.||.++|..|+...+|.
T Consensus 296 SGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 296 SGSDLKELCRLAALRPIRE 314 (386)
T ss_pred cHHHHHHHHHHHhHhHHHH
Confidence 9999999999999876554
No 24
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=2e-30 Score=249.88 Aligned_cols=178 Identities=80% Similarity=1.197 Sum_probs=168.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++.+|+.+.++.+..+|.|++++.++.+|..|+..+||||||||+|.++.+|.+..++.+....+++.++
T Consensus 193 T~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~L 272 (398)
T PTZ00454 193 TMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLEL 272 (398)
T ss_pred HHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999988666666666778999999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|++|+++....+++||++||+|+.+|++++|||||+..|+++.|+.++|..||+.++.+.++..++++..++..|.||||
T Consensus 273 L~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sg 352 (398)
T PTZ00454 273 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISA 352 (398)
T ss_pred HHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCH
Confidence 99999998888999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred hhHHHHHHHHHHhhcccc
Q psy6770 161 ADINAICQEVIMATNRAD 178 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~ 178 (362)
+||.++|++|.+.+.+..
T Consensus 353 aDI~~l~~eA~~~A~r~~ 370 (398)
T PTZ00454 353 ADIAAICQEAGMQAVRKN 370 (398)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999999988775
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=1e-30 Score=229.08 Aligned_cols=173 Identities=28% Similarity=0.516 Sum_probs=156.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+|+|||+|+|+++||+.++.+++++.++|++.++|+++|+.|+..+|||+||||+|+|+-.|.--. -...+..++|.|
T Consensus 165 Tm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe--lRGDVsEiVNAL 242 (368)
T COG1223 165 TMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE--LRGDVSEIVNAL 242 (368)
T ss_pred HHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH--hcccHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999998873211 122345789999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|++||+++++.+|+.|++||+|+.+|+|+++ ||...|+|.+|+.++|..|++.+.+..++.-+.++..++.+|.||||
T Consensus 243 LTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~Sg 320 (368)
T COG1223 243 LTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSG 320 (368)
T ss_pred HHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999 99999999999999999999999999999989999999999999999
Q ss_pred hhHH-HHHHHHHHhhccc
Q psy6770 161 ADIN-AICQEVIMATNRA 177 (362)
Q Consensus 161 ~di~-~l~~~a~~~~~r~ 177 (362)
.||. .+++.|...+...
T Consensus 321 RdikekvlK~aLh~Ai~e 338 (368)
T COG1223 321 RDIKEKVLKTALHRAIAE 338 (368)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 9995 5556666655543
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-30 Score=259.15 Aligned_cols=176 Identities=40% Similarity=0.650 Sum_probs=162.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+|+|++++.+|+.++++++.++|+|+++++++.+|..|+..+||||||||+|++++.|+....+. ..++++++
T Consensus 290 T~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~---~~r~~~~l 366 (494)
T COG0464 290 TLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS---GRRVVGQL 366 (494)
T ss_pred HHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH---HHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999985443322 26899999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCC--CCcCCHHHHHhcCCCC
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL--SDEVDLEDYVARPDRI 158 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~--~~~~dl~~la~~t~g~ 158 (362)
|.+|+++....+|+||++||.||.+|+|++|||||+..|++++|+.++|.+|++.++..... ..++++..++..|.||
T Consensus 367 L~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~ 446 (494)
T COG0464 367 LTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGY 446 (494)
T ss_pred HHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999996554 4688999999999999
Q ss_pred cHhhHHHHHHHHHHhhccccc
Q psy6770 159 SGADINAICQEVIMATNRADT 179 (362)
Q Consensus 159 s~~di~~l~~~a~~~~~r~~~ 179 (362)
+++||..+|++|.+.+.+...
T Consensus 447 sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 447 SGADIAALVREAALEALREAR 467 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998877653
No 27
>KOG0729|consensus
Probab=99.97 E-value=1.1e-30 Score=229.74 Aligned_cols=177 Identities=50% Similarity=0.803 Sum_probs=170.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+|+|+|+|+..++.||.|-+|.+..+|+||+.+.++++|+.|+..+-|||||||||++.+.|-+.+.+.+.+..+...++
T Consensus 225 tl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmlel 304 (435)
T KOG0729|consen 225 TLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLEL 304 (435)
T ss_pred hHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999777777888899999999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
++++|+++..+++-|+.+||+|+.+|||++||||+|+.++|.+|+.+.|..|++.|.+.+.+..++-++-+|..+..-||
T Consensus 305 i~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstg 384 (435)
T KOG0729|consen 305 INQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTG 384 (435)
T ss_pred HHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccc
Q psy6770 161 ADINAICQEVIMATNRA 177 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~ 177 (362)
++|+++|.+|-+.+.+.
T Consensus 385 aeirsvcteagmfaira 401 (435)
T KOG0729|consen 385 AEIRSVCTEAGMFAIRA 401 (435)
T ss_pred hHHHHHHHHhhHHHHHH
Confidence 99999999999988765
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=5.6e-30 Score=255.57 Aligned_cols=178 Identities=40% Similarity=0.652 Sum_probs=164.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++++|+.++++++.+.+.|++++.++.+|+.|+..+||||||||+|.++.++.....+.+....+.+++|
T Consensus 102 T~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 181 (495)
T TIGR01241 102 TLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL 181 (495)
T ss_pred HHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999888654444455567899999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|.+||++...++++||+|||+|+.+|++++|||||+..|+++.|+.++|.+|++.+++......+.++..++..|.|||+
T Consensus 182 L~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sg 261 (495)
T TIGR01241 182 LVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSG 261 (495)
T ss_pred HhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCH
Confidence 99999998888999999999999999999999999999999999999999999999998877778899999999999999
Q ss_pred hhHHHHHHHHHHhhcccc
Q psy6770 161 ADINAICQEVIMATNRAD 178 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~ 178 (362)
+||.++|++|...+.+.+
T Consensus 262 adl~~l~~eA~~~a~~~~ 279 (495)
T TIGR01241 262 ADLANLLNEAALLAARKN 279 (495)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999987765543
No 29
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=4.4e-30 Score=262.31 Aligned_cols=192 Identities=34% Similarity=0.585 Sum_probs=172.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|++|+++|++++++|+.++++++.+.+.|.+...++.+|+.|+..+||||||||+|.++..|+.+..+.+....++++++
T Consensus 199 t~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~l 278 (644)
T PRK10733 199 TLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 278 (644)
T ss_pred HHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999988665445555667899999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|.+||++..+.+++||+|||+|+.+|++++||||||+.|+++.|+.++|.+||+.++++.++..++++..++..|.|||+
T Consensus 279 L~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sg 358 (644)
T PRK10733 279 LVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSG 358 (644)
T ss_pred HHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCH
Confidence 99999998888999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIE 195 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~ 195 (362)
+||.++|++|+..+.+.. ...+....+...++
T Consensus 359 adl~~l~~eAa~~a~r~~---~~~i~~~d~~~a~~ 390 (644)
T PRK10733 359 ADLANLVNEAALFAARGN---KRVVSMVEFEKAKD 390 (644)
T ss_pred HHHHHHHHHHHHHHHHcC---CCcccHHHHHHHHH
Confidence 999999999998877654 23344444444443
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=7.7e-30 Score=265.51 Aligned_cols=176 Identities=45% Similarity=0.710 Sum_probs=163.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++++|+.++++++.++|+|++++.++.+|+.|+..+||||||||+|+++++|+.... .....+++++|
T Consensus 501 T~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~l 578 (733)
T TIGR01243 501 TLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQL 578 (733)
T ss_pred HHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999998854322 22446899999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|.+||++....+++||+|||+|+.+|++++|||||+..|++|+|+.++|.+||+.+.++.++..++++..+|+.|.||||
T Consensus 579 L~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sg 658 (733)
T TIGR01243 579 LTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTG 658 (733)
T ss_pred HHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCH
Confidence 99999998888999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred hhHHHHHHHHHHhhcccc
Q psy6770 161 ADINAICQEVIMATNRAD 178 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~ 178 (362)
+||.++|++|.+.+.+..
T Consensus 659 adi~~~~~~A~~~a~~~~ 676 (733)
T TIGR01243 659 ADIEAVCREAAMAALRES 676 (733)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887753
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.4e-29 Score=256.24 Aligned_cols=264 Identities=33% Similarity=0.492 Sum_probs=196.6
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++++|+.++++++...+.|.+.+.++.+|+.|+..+||||||||+|.++..|+....+.+......++++
T Consensus 230 T~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 309 (638)
T CHL00176 230 TLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQL 309 (638)
T ss_pred HHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999888655555556667899999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|.+||++..+.+++||++||+++.+|++++|||||+..|++++|+.++|.+||+.+++......+.++..++..|.||++
T Consensus 310 L~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sg 389 (638)
T CHL00176 310 LTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSG 389 (638)
T ss_pred HhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCH
Confidence 99999998888999999999999999999999999999999999999999999999998777778899999999999999
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
+||.++|++|+..+.+... ..+....+...++.......++. +...-...+..+++.++.+|-......+.+++-.
T Consensus 390 aDL~~lvneAal~a~r~~~---~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvt 465 (638)
T CHL00176 390 ADLANLLNEAAILTARRKK---ATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVT 465 (638)
T ss_pred HHHHHHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCCCceEEEE
Confidence 9999999999887665542 23344444444332211111111 1112222334555555544433333334444444
Q ss_pred cCCCCcceeEEecCCCH----HHHHHHHHHHh
Q psy6770 241 LRPGRLDRKIEFPLPDR----RQKRLVFSTIT 268 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~----~~r~~i~~~~l 268 (362)
+.|..-........|+. ..|..++..+.
T Consensus 466 I~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~ 497 (638)
T CHL00176 466 LIPRGQAKGLTWFTPEEDQSLVSRSQILARIV 497 (638)
T ss_pred EeecCCCCCceEecCCcccccccHHHHHHHHH
Confidence 44432223334445543 24445554443
No 32
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=5.9e-29 Score=240.51 Aligned_cols=192 Identities=54% Similarity=0.820 Sum_probs=172.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|++|+++|++++.+|+.++++++..+|.|++++.++.+|+.|+..+||||||||+|.+++++.+.....+....+.+.++
T Consensus 179 T~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~l 258 (389)
T PRK03992 179 TLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 258 (389)
T ss_pred HHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999988765555566678889999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
+.+++++...+++.||+|||.++.+|++++|||||+..|+|++|+.++|.+||+.++.+..+..++++..++..|.||++
T Consensus 259 L~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sg 338 (389)
T PRK03992 259 LAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASG 338 (389)
T ss_pred HHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCH
Confidence 99999988788999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIE 195 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~ 195 (362)
+||.++|++|.+.+.+... ..+....+.+++.
T Consensus 339 adl~~l~~eA~~~a~~~~~---~~i~~~d~~~A~~ 370 (389)
T PRK03992 339 ADLKAICTEAGMFAIRDDR---TEVTMEDFLKAIE 370 (389)
T ss_pred HHHHHHHHHHHHHHHHcCC---CCcCHHHHHHHHH
Confidence 9999999999998877642 2344444444443
No 33
>KOG0734|consensus
Probab=99.96 E-value=4.4e-30 Score=244.03 Aligned_cols=142 Identities=27% Similarity=0.370 Sum_probs=126.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARP 286 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~ 286 (362)
-+||+|.+||||..+.+|+||+|||+|+.||+|++||||||++|.||+||...|.+||+.|+++++++.++|+..||+-|
T Consensus 423 TlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT 502 (752)
T KOG0734|consen 423 TLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGT 502 (752)
T ss_pred HHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCchHHHHHHHHhchHHHhhhccccccccccccc
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHE 359 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (362)
.|||||||+++++.|++.|..++...|++.||+-|-+++--. .+.-..-++...++..+|||
T Consensus 503 ~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG-----------~ERks~~i~~eak~~TAyHE 564 (752)
T KOG0734|consen 503 PGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMG-----------PERKSMVIDEEAKKITAYHE 564 (752)
T ss_pred CCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeec-----------ccccccccChhhhhhhhhhc
Confidence 999999999999999999999999999999999998886543 11112234444556667776
No 34
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=9.8e-29 Score=239.63 Aligned_cols=178 Identities=57% Similarity=0.992 Sum_probs=167.6
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++.+|+.+.++++.++|.|++++.++.+|+.|+..+||||||||||.++.+|....++.+....+.+.++
T Consensus 231 T~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~L 310 (438)
T PTZ00361 231 TLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLEL 310 (438)
T ss_pred HHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999988766666666777889999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|.+++++....++.||++||+++.+|++++|||||+..|+|+.|+.++|.+||+.++.+..+..++++..++..+.|||+
T Consensus 311 L~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sg 390 (438)
T PTZ00361 311 LNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSG 390 (438)
T ss_pred HHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCH
Confidence 99999988778999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred hhHHHHHHHHHHhhcccc
Q psy6770 161 ADINAICQEVIMATNRAD 178 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~ 178 (362)
+||.++|++|.+.|.+..
T Consensus 391 AdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 391 ADIKAICTEAGLLALRER 408 (438)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999888765
No 35
>KOG0740|consensus
Probab=99.96 E-value=4.5e-29 Score=236.90 Aligned_cols=171 Identities=33% Similarity=0.553 Sum_probs=153.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
.||++|||.|+++.|+.|+++++.++|+|++|+.++.+|..|+..+|+||||||+|.++.+|.+.... ...+...++
T Consensus 200 tmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e---~srr~ktef 276 (428)
T KOG0740|consen 200 TMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHE---SSRRLKTEF 276 (428)
T ss_pred HHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccc---cchhhhhHH
Confidence 47999999999999999999999999999999999999999999999999999999999999443333 335889999
Q ss_pred HHhccCCC--CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCC
Q psy6770 81 LNQMDGFD--QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDR 157 (362)
Q Consensus 81 L~~ld~l~--~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g 157 (362)
|.++++.. ..++|+||+|||.||.+|.+++| ||.++++||+|+.+.|..+|..+++..+.. .+.+++.++..|+|
T Consensus 277 Liq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 277 LLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred HhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 99988863 45689999999999999999999 999999999999999999999999988332 45689999999999
Q ss_pred CcHhhHHHHHHHHHHhhcc
Q psy6770 158 ISGADINAICQEVIMATNR 176 (362)
Q Consensus 158 ~s~~di~~l~~~a~~~~~r 176 (362)
|+++||.++|++|++.-.+
T Consensus 355 ysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 355 YSGSDITALCKEAAMGPLR 373 (428)
T ss_pred cccccHHHHHHHhhcCchh
Confidence 9999999999999875443
No 36
>KOG0651|consensus
Probab=99.96 E-value=3.3e-29 Score=224.59 Aligned_cols=178 Identities=48% Similarity=0.788 Sum_probs=168.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
||+|+++|...|++|+.++++.+.++|.||+.+.|++-|..|+...|||||+||||++.+.+.+..+..+..+.+.+.++
T Consensus 180 Tlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeL 259 (388)
T KOG0651|consen 180 TLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMEL 259 (388)
T ss_pred hHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999777777788899999999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
+++|++++..++|-+|+|||+|+.+||+|+||||+|+.+++|+|+...|..|++.+.........+|.+.+....+||.+
T Consensus 260 lnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 260 LNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred HHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 99999999999999999999999999999999999999999999999999999999888888888999999999999999
Q ss_pred hhHHHHHHHHHHhhcccc
Q psy6770 161 ADINAICQEVIMATNRAD 178 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~ 178 (362)
+|+.+.|++|-+.+.+..
T Consensus 340 ad~rn~~tEag~Fa~~~~ 357 (388)
T KOG0651|consen 340 ADLRNVCTEAGMFAIPEE 357 (388)
T ss_pred HHHhhhcccccccccchh
Confidence 999999999877665543
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=7.3e-28 Score=223.57 Aligned_cols=166 Identities=21% Similarity=0.236 Sum_probs=139.0
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHc-----CCeEEEeccccccccccCCCCCCCcHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN-----SPAIIFIDEIDAIATKRFDAQTGADREVQR 75 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~-----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~ 75 (362)
|++|++||+++|++|+.++++++.++|+||+|++|+++|+.|+.. +||||||||||++++.|++.+.. ...+
T Consensus 162 TllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~t---v~~q 238 (413)
T PLN00020 162 SFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYT---VNNQ 238 (413)
T ss_pred HHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcc---hHHH
Confidence 689999999999999999999999999999999999999999864 69999999999999998533222 2234
Q ss_pred H-HHHHHHhccCC------------CCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCC
Q psy6770 76 I-LLELLNQMDGF------------DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL 142 (362)
Q Consensus 76 ~-l~~lL~~ld~l------------~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~ 142 (362)
+ ..+||+.||++ ....+|+||+|||+|+.|||+|+||||||+.+ .+|+.++|.+||+.++++.++
T Consensus 239 iV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l 316 (413)
T PLN00020 239 MVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV 316 (413)
T ss_pred HHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC
Confidence 4 47899988863 24567999999999999999999999999965 589999999999999999877
Q ss_pred CCcCCHHHHHhcCCC----CcHhhHHHHHHHHHH
Q psy6770 143 SDEVDLEDYVARPDR----ISGADINAICQEVIM 172 (362)
Q Consensus 143 ~~~~dl~~la~~t~g----~s~~di~~l~~~a~~ 172 (362)
. ..++..|+..+.| |.|+--..+..+++.
T Consensus 317 ~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~ 349 (413)
T PLN00020 317 S-REDVVKLVDTFPGQPLDFFGALRARVYDDEVR 349 (413)
T ss_pred C-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHH
Confidence 6 4689999998877 556655555555543
No 38
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.95 E-value=1.4e-26 Score=227.63 Aligned_cols=232 Identities=28% Similarity=0.396 Sum_probs=180.6
Q ss_pred CcHHHHHHhhhCCc----------EEEEechhhhhhhcCchHHHHHHHHHHHHHc----CCeEEEeccccccccccCCCC
Q psy6770 1 YLLCTSFDTELVTA----------FIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQ 66 (362)
Q Consensus 1 slLakaiA~e~~~~----------~~~v~~s~l~~~~~gese~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~ 66 (362)
|++|+++|++++.+ |+.++++++.++|.|++++.++.+|+.|+.. .||||||||+|.++.+|+...
T Consensus 230 T~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~ 309 (512)
T TIGR03689 230 TLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV 309 (512)
T ss_pred HHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc
Confidence 68999999998754 7788889999999999999999999999874 699999999999998885432
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcC
Q psy6770 67 TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEV 146 (362)
Q Consensus 67 ~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~ 146 (362)
+ +....+++++||++||++...++++||+|||+++.||||++||||||.+|+|+.|+.++|.+||+.++....
T Consensus 310 s--~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l----- 382 (512)
T TIGR03689 310 S--SDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL----- 382 (512)
T ss_pred c--chHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC-----
Confidence 2 223367899999999999887899999999999999999999999999999999999999999999986421
Q ss_pred CHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEE
Q psy6770 147 DLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQV 226 (362)
Q Consensus 147 dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~v 226 (362)
.+...+..+.|++++++..+|++++....... +..+.+-
T Consensus 383 ~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~-----------------------------------------~~~~~l~ 421 (512)
T TIGR03689 383 PLDADLAEFDGDREATAAALIQRAVDHLYATS-----------------------------------------EENRYVE 421 (512)
T ss_pred CchHHHHHhcCCCHHHHHHHHHHHHHHHhhhh-----------------------------------------cccceeE
Confidence 11223345799999999999998764321100 0000111
Q ss_pred EEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q psy6770 227 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAV 306 (362)
Q Consensus 227 i~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~ 306 (362)
+.-+| -+++ ....++.+|||+|+++|.+|...|+
T Consensus 422 ~~~~~---------------------------------------------g~~~-~l~~~d~~sGa~i~~iv~~a~~~ai 455 (512)
T TIGR03689 422 VTYAN---------------------------------------------GSTE-VLYFKDFVSGAMIANIVDRAKKRAI 455 (512)
T ss_pred EEecC---------------------------------------------Ccee-eEeecccccHHHHHHHHHHHHHHHH
Confidence 11111 1111 2234678999999999999999998
Q ss_pred Hh----cCCCCCHHHHHHHHHHHh
Q psy6770 307 RE----NRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 307 ~~----~~~~v~~~~~~~a~~~~~ 326 (362)
.+ +...++.+|+..|+...-
T Consensus 456 ~~~~~~~~~~~~~~~l~~a~~~e~ 479 (512)
T TIGR03689 456 KDHITGGQVGLRIEHLLAAVLDEF 479 (512)
T ss_pred HHHHhcCCcCcCHHHHHHHHHHhh
Confidence 76 346899999999987643
No 39
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=5.6e-26 Score=218.61 Aligned_cols=178 Identities=56% Similarity=0.860 Sum_probs=165.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++.+|+.+.++++...|.|++...++.+|+.++..+|+||||||+|.++.++.+...+.+....+.+.++
T Consensus 170 T~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~l 249 (364)
T TIGR01242 170 TLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 249 (364)
T ss_pred HHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999887665555566677889999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
+.+++++...+++.+|+|||.++.+|++++|||||+..|+++.|+.++|.+|++.++.+.....++++..++..|.||++
T Consensus 250 l~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg 329 (364)
T TIGR01242 250 LAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASG 329 (364)
T ss_pred HHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCH
Confidence 99999987778999999999999999999999999999999999999999999999998888878899999999999999
Q ss_pred hhHHHHHHHHHHhhcccc
Q psy6770 161 ADINAICQEVIMATNRAD 178 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~ 178 (362)
+||.++|++|.+.+.+..
T Consensus 330 ~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 330 ADLKAICTEAGMFAIREE 347 (364)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999999887664
No 40
>KOG0741|consensus
Probab=99.94 E-value=4.4e-27 Score=223.47 Aligned_cols=175 Identities=34% Similarity=0.508 Sum_probs=153.0
Q ss_pred CcHHHHHHhhhCC-cEEEEechhhhhhhcCchHHHHHHHHHHHHHc--------CCeEEEeccccccccccCCCCCCCcH
Q psy6770 1 YLLCTSFDTELVT-AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN--------SPAIIFIDEIDAIATKRFDAQTGADR 71 (362)
Q Consensus 1 slLakaiA~e~~~-~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~--------~P~II~iDeiD~l~~~r~~~~~~~~~ 71 (362)
+|+||.|..=+++ +=-.|++.+++++|+|+||.++|++|..|... +=-||+|||||++|..|++...+. .
T Consensus 270 TLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~T-G 348 (744)
T KOG0741|consen 270 TLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGST-G 348 (744)
T ss_pred hHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCC-C
Confidence 4788888888875 55678999999999999999999999888542 234999999999999996554322 2
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCC----CCCcCC
Q psy6770 72 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN----LSDEVD 147 (362)
Q Consensus 72 ~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~----~~~~~d 147 (362)
....++++||..|||.+.-++++||+-||+.+.||.||+|||||...+++.+|++..|.+|++.|.+++. +.+++|
T Consensus 349 VhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVd 428 (744)
T KOG0741|consen 349 VHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVD 428 (744)
T ss_pred ccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcC
Confidence 3458999999999999999999999999999999999999999999999999999999999999988763 568899
Q ss_pred HHHHHhcCCCCcHhhHHHHHHHHHHhhcc
Q psy6770 148 LEDYVARPDRISGADINAICQEVIMATNR 176 (362)
Q Consensus 148 l~~la~~t~g~s~~di~~l~~~a~~~~~r 176 (362)
+.++|..|..|||++|+.+++.|.-.|+.
T Consensus 429 l~elA~lTKNfSGAEleglVksA~S~A~n 457 (744)
T KOG0741|consen 429 LKELAALTKNFSGAELEGLVKSAQSFAMN 457 (744)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876654
No 41
>KOG0732|consensus
Probab=99.93 E-value=1.1e-26 Score=238.61 Aligned_cols=305 Identities=25% Similarity=0.334 Sum_probs=223.7
Q ss_pred CcHHHHHHhhhC-----CcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHH
Q psy6770 1 YLLCTSFDTELV-----TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQR 75 (362)
Q Consensus 1 slLakaiA~e~~-----~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~ 75 (362)
++.|+++|.++. ..|+.-++.+..++|+|+.|+.++.+|+.|+.++|+||||||||-+++.|+.. .+.....
T Consensus 313 Tl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~S 389 (1080)
T KOG0732|consen 313 TLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHAS 389 (1080)
T ss_pred hHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhh
Confidence 467889987775 58899999999999999999999999999999999999999999999998433 2333458
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhc
Q psy6770 76 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 154 (362)
Q Consensus 76 ~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~ 154 (362)
++..+|..|||+...+.|+||++||+|+.+|||++||||||..++|++|+.+.|..|+..+..++... ...-+..+++.
T Consensus 390 IvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~ 469 (1080)
T KOG0732|consen 390 IVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEE 469 (1080)
T ss_pred HHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999998877632 22346789999
Q ss_pred CCCCcHhhHHHHHHHHHHhhccccc-----------CCCcccCc--cc--------------------------------
Q psy6770 155 PDRISGADINAICQEVIMATNRADT-----------LDPALLRP--GR-------------------------------- 189 (362)
Q Consensus 155 t~g~s~~di~~l~~~a~~~~~r~~~-----------~~~~~i~~--~~-------------------------------- 189 (362)
|.||.|+||+.+|.+|++.+.+... +++..+.- ..
T Consensus 470 t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~ 549 (1080)
T KOG0732|consen 470 TSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLP 549 (1080)
T ss_pred ccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccc
Confidence 9999999999999999998877521 11111100 00
Q ss_pred -------------------------------hhh--hhccCC--------Chhhhhhh-----------------hhhhh
Q psy6770 190 -------------------------------LDR--KIEFPL--------PDRRQKRL-----------------VFSTI 211 (362)
Q Consensus 190 -------------------------------l~~--~~~~~~--------~~~~~k~~-----------------~~~~~ 211 (362)
+.. .+.+.+ ..|.|-+. .++.+
T Consensus 550 ~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issl 629 (1080)
T KOG0732|consen 550 FQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSL 629 (1080)
T ss_pred hHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHH
Confidence 000 000000 00011111 12222
Q ss_pred hhhhhhhhccCCeEEEEecCC---------CCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCC---C-CCCC
Q psy6770 212 TAKMNFMLNIGNLQVIMATNR---------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL---S-DEVD 278 (362)
Q Consensus 212 l~~~~~~~~~~~v~vi~aTn~---------~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~---~-~~~~ 278 (362)
+..+++-.....|+.|+++++ |+..+.+..+|++|...++..+|....+..+...+...... . ....
T Consensus 630 l~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~s~~~~~~~~l~~~~~~t~i~e~~t~~~~~~~~~~~~~t 709 (1080)
T KOG0732|consen 630 LSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPVSFLEEFLSSLDEKALSTPILELHTWDTSFESVNKSVVT 709 (1080)
T ss_pred HhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcchhhhcchhcchhhhhccchhhhccccccccccCccccc
Confidence 322222222223444454444 57778999999999999999999888888887776643321 1 1111
Q ss_pred -HHHHhhCCCCCCHHHHHHHHHHHHHHHHHh
Q psy6770 279 -LEDYVARPDRISGADINAICQEAGMHAVRE 308 (362)
Q Consensus 279 -~~~la~~~~g~sgadi~~~~~~a~~~a~~~ 308 (362)
....+..+.+|.+.+|+.+|....-.+...
T Consensus 710 ~~~p~~~s~~~ff~r~I~~~~~~~~~~~~k~ 740 (1080)
T KOG0732|consen 710 LSKPSAESTGAFFKRLIRKISQEPSGEAGKR 740 (1080)
T ss_pred cccchhhhhHHHHHHHHHHHhhhhhccccCC
Confidence 122445577899999999999998887765
No 42
>KOG0731|consensus
Probab=99.93 E-value=2.2e-26 Score=230.71 Aligned_cols=122 Identities=33% Similarity=0.519 Sum_probs=116.8
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
-+||+|.+||++...++|+|+++||+|+.||+|++||||||++|++++|+..+|.+||+.|+++.++. +++|+..+|..
T Consensus 434 tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~ 513 (774)
T KOG0731|consen 434 TLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASL 513 (774)
T ss_pred HHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999885 78899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
|.|||||||.++|++|++.|+|++...|+..||+.|+++....
T Consensus 514 t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 514 TPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred CCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999987664
No 43
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-25 Score=221.91 Aligned_cols=202 Identities=23% Similarity=0.344 Sum_probs=156.6
Q ss_pred EEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhcc-
Q psy6770 119 IEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEF- 196 (362)
Q Consensus 119 i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~- 196 (362)
+.+++|. .+...+-+....+.+++ -.+.-....+...|.-.+.++.+..+|...+ |+.+....++..-..
T Consensus 187 lLvGpPG-TGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~a-------P~IIFIDEiDAvGr~R 258 (596)
T COG0465 187 LLVGPPG-TGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNA-------PCIIFIDEIDAVGRQR 258 (596)
T ss_pred eEecCCC-CCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccC-------CCeEEEehhhhccccc
Confidence 3444444 45555556655555544 1233455666667777777888877766543 444443332211100
Q ss_pred ---CCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCC
Q psy6770 197 ---PLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL 273 (362)
Q Consensus 197 ---~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~ 273 (362)
+.....-....+|++|.+||++.++..|+||+||||||.||||++||||||+.|.+++||...|.+|++.|+++.++
T Consensus 259 g~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l 338 (596)
T COG0465 259 GAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL 338 (596)
T ss_pred CCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC
Confidence 11111112235899999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 274 SDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 274 ~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
+.++|+..+|+.|.||||||++++|++|++.|++.+...|++.||..|.+++...
T Consensus 339 ~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 339 AEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred CCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999997654
No 44
>KOG0652|consensus
Probab=99.91 E-value=8.7e-25 Score=192.06 Aligned_cols=119 Identities=39% Similarity=0.629 Sum_probs=114.1
Q ss_pred hhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCC
Q psy6770 210 TITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 289 (362)
Q Consensus 210 ~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~ 289 (362)
++|+++|||.+..+|-||+|||+.+.||||++|+||+|++|.||.|++++|.+|++.|.+++.+.+++++++||+.|++|
T Consensus 297 ELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 297 ELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDF 376 (424)
T ss_pred HHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 290 SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 290 sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
.||+.+++|.+|+|.|+|.+...|+.+||..++..+..-
T Consensus 377 NGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 377 NGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred CchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998776543
No 45
>KOG0729|consensus
Probab=99.91 E-value=9.3e-25 Score=192.39 Aligned_cols=119 Identities=39% Similarity=0.634 Sum_probs=113.9
Q ss_pred hhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCC
Q psy6770 210 TITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 289 (362)
Q Consensus 210 ~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~ 289 (362)
++++++|++..++++-|++|||+|+.||||++||||+|+++.|.+||.+.|..||+.|.+.+.+..++-++.||+.++..
T Consensus 303 eli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpns 382 (435)
T KOG0729|consen 303 ELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNS 382 (435)
T ss_pred HHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 290 SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 290 sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
|||||+.+|.+|+|.|++..+...+..||.+|++.+...
T Consensus 383 tgaeirsvcteagmfairarrk~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 383 TGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKG 421 (435)
T ss_pred cchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887654
No 46
>KOG0728|consensus
Probab=99.90 E-value=3.7e-24 Score=187.14 Aligned_cols=118 Identities=42% Similarity=0.664 Sum_probs=113.2
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPD 287 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~ 287 (362)
.-++|+++|||+..+++-||+|||+.|.||||++||||+|++|.||.|++++|.+|++.|.+++.+...+++..+|+...
T Consensus 271 mlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 271 MLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred HHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 288 RISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 288 g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
|.|||+++.+|.+|+|.|+|+.+-.||++||+-|...+
T Consensus 351 gasgaevk~vcteagm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 351 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred CCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999887654
No 47
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.89 E-value=9.1e-23 Score=196.80 Aligned_cols=124 Identities=69% Similarity=1.088 Sum_probs=118.2
Q ss_pred hhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh
Q psy6770 205 RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVA 284 (362)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~ 284 (362)
.+++.+++++|+++...++++||+|||+|+.||||++||||||++|+|++|+.++|..||+.+++++++..++|++.+++
T Consensus 266 ~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~ 345 (398)
T PTZ00454 266 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVS 345 (398)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHH
Confidence 35788999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
.|+|||||||+++|++|++.|+++++..|+.+||.+|+.++...
T Consensus 346 ~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 346 RPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987654
No 48
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.89 E-value=1.4e-22 Score=207.27 Aligned_cols=125 Identities=32% Similarity=0.473 Sum_probs=119.1
Q ss_pred hhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHh
Q psy6770 204 KRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYV 283 (362)
Q Consensus 204 k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la 283 (362)
...+++++|.+||++....+++||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.|+++.++..++|+..++
T Consensus 271 ~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la 350 (644)
T PRK10733 271 REQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA 350 (644)
T ss_pred HHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHH
Confidence 34588999999999998899999999999999999999999999999999999999999999999999998899999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 284 ARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 284 ~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
+.|.|||||||.++|++|+..|++.+...|+..||++|++++.+.
T Consensus 351 ~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 351 RGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999987654
No 49
>KOG0741|consensus
Probab=99.88 E-value=1.1e-23 Score=200.37 Aligned_cols=124 Identities=31% Similarity=0.487 Sum_probs=114.3
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCC----CCCCCCHHHH
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN----LSDEVDLEDY 282 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~----~~~~~~~~~l 282 (362)
|+||+|+.|||++.-.+|+||+.|||+|.||.|+||||||.-++++.|||+..|.+|++.|.++|. ++.++|+.+|
T Consensus 353 VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~el 432 (744)
T KOG0741|consen 353 VVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKEL 432 (744)
T ss_pred HHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999998775 4579999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHhCchH
Q psy6770 283 VARPDRISGADINAICQEAGMHAVRENR---------------YIVLPKDFEKGYKKCAGMHA 330 (362)
Q Consensus 283 a~~~~g~sgadi~~~~~~a~~~a~~~~~---------------~~v~~~~~~~a~~~~~~~~~ 330 (362)
|..|..||||+|+.+|+.|.-.|+.+.. -.|+.+||..|+..++|..-
T Consensus 433 A~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG 495 (744)
T KOG0741|consen 433 AALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG 495 (744)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC
Confidence 9999999999999999999888875511 25799999999999999664
No 50
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.87 E-value=6.8e-22 Score=197.47 Aligned_cols=202 Identities=23% Similarity=0.360 Sum_probs=153.5
Q ss_pred EEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhcc
Q psy6770 118 KIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEF 196 (362)
Q Consensus 118 ~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~ 196 (362)
.+-.++| -..+..+.+...+..... -.++...+.....|.+...+..++..|... .|..+..+.++.....
T Consensus 91 iLL~Gpp-GtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~-------~p~Il~iDEid~l~~~ 162 (495)
T TIGR01241 91 VLLVGPP-GTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKN-------APCIIFIDEIDAVGRQ 162 (495)
T ss_pred EEEECCC-CCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhc-------CCCEEEEechhhhhhc
Confidence 3444444 345555555555544332 123444555555677777777777766432 2444443333222110
Q ss_pred C---C-ChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCC
Q psy6770 197 P---L-PDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 272 (362)
Q Consensus 197 ~---~-~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~ 272 (362)
. . ........++++++.+||++.+.++++||+|||+|+.||||++||||||++|++++|+.++|.+||+.++++.+
T Consensus 163 r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~ 242 (495)
T TIGR01241 163 RGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK 242 (495)
T ss_pred cccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC
Confidence 0 0 11123456789999999999988899999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 273 LSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 273 ~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
...++++..+++.|.||||+||+++|++|++.|++++..+|+.+||+.|+.++.+
T Consensus 243 ~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 243 LAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred CCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 8788999999999999999999999999999999999899999999999998864
No 51
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.86 E-value=1.9e-21 Score=188.19 Aligned_cols=124 Identities=46% Similarity=0.700 Sum_probs=118.1
Q ss_pred hhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhC
Q psy6770 206 LVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285 (362)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~ 285 (362)
+.+.+++.+++++...+++.||+|||+++.||+|++||||||..|+|++|+.++|.+||+.+++++++..++++..+|..
T Consensus 253 ~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~ 332 (389)
T PRK03992 253 RTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAEL 332 (389)
T ss_pred HHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHH
Confidence 45678889999998888999999999999999999999999999999999999999999999999988888999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCch
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMH 329 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~ 329 (362)
|+||||+||+++|++|++.|++++...|+.+||.+|++.+.++.
T Consensus 333 t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 333 TEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999998874
No 52
>KOG0737|consensus
Probab=99.86 E-value=4.7e-21 Score=176.59 Aligned_cols=141 Identities=26% Similarity=0.405 Sum_probs=119.5
Q ss_pred hhhhhhhhhhhhhhhhhhccCC--eEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCH
Q psy6770 202 RQKRLVFSTITAKMNFMLNIGN--LQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDL 279 (362)
Q Consensus 202 ~~k~~~~~~~l~~~~~~~~~~~--v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~ 279 (362)
+.-.++.+++....||+...++ |+|+||||+|..||.|++| |+-++++|++|+..+|.+|++.++++-++.+++|+
T Consensus 208 Ea~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~ 285 (386)
T KOG0737|consen 208 EATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDL 285 (386)
T ss_pred HHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCH
Confidence 3444466777777888876655 9999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHh----c------------------------CCCCCHHHHHHHHHHHhCchHH
Q psy6770 280 EDYVARPDRISGADINAICQEAGMHAVRE----N------------------------RYIVLPKDFEKGYKKCAGMHAV 331 (362)
Q Consensus 280 ~~la~~~~g~sgadi~~~~~~a~~~a~~~----~------------------------~~~v~~~~~~~a~~~~~~~~~~ 331 (362)
..+|+.|+||||+||.++|+.|++.++++ + ..+++++||.++...+.+++..
T Consensus 286 ~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~ 365 (386)
T KOG0737|consen 286 DEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAM 365 (386)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999875 1 3678999999999988887654
Q ss_pred HH---HHHHhchHHHh
Q psy6770 332 RE---NRYIVLPKDFE 344 (362)
Q Consensus 332 ~~---~~~~~~~~~~~ 344 (362)
+. ...+.|++.++
T Consensus 366 ~~t~~~a~~~~~~~~~ 381 (386)
T KOG0737|consen 366 DATRMNALKQWNELYG 381 (386)
T ss_pred hhhhhHHHHHHHhhhc
Confidence 33 34444444443
No 53
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.86 E-value=2.5e-21 Score=188.04 Aligned_cols=123 Identities=47% Similarity=0.768 Sum_probs=116.7
Q ss_pred hhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhC
Q psy6770 206 LVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285 (362)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~ 285 (362)
+.+.+++++|+++....++.||+|||+++.||+|++||||||++|+|++|+.++|.+||+.+++++.+..++|++.++..
T Consensus 305 r~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~ 384 (438)
T PTZ00361 305 RTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMA 384 (438)
T ss_pred HHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHh
Confidence 45678999999998888999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
++|||||||+++|++|++.|+++++..|+.+||.+|++++...
T Consensus 385 t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 385 KDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987543
No 54
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.83 E-value=1.2e-20 Score=165.95 Aligned_cols=121 Identities=28% Similarity=0.414 Sum_probs=113.8
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARP 286 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~ 286 (362)
++|++|++||+..++.+|+.|+|||+|+.||||+.- ||..-|.|.||+.++|..|++.|.+++++.-+.+++.++.+|
T Consensus 238 iVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t 315 (368)
T COG1223 238 IVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKT 315 (368)
T ss_pred HHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHh
Confidence 889999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCch
Q psy6770 287 DRISGADINA-ICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMH 329 (362)
Q Consensus 287 ~g~sgadi~~-~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~ 329 (362)
.||||.||.. +++.|...|+.++++.|+.+|++.|+++..+..
T Consensus 316 ~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 316 KGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKERKRR 359 (368)
T ss_pred CCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhhcccc
Confidence 9999999986 666677889999999999999999999866553
No 55
>CHL00176 ftsH cell division protein; Validated
Probab=99.83 E-value=8.4e-20 Score=185.24 Aligned_cols=123 Identities=31% Similarity=0.471 Sum_probs=116.5
Q ss_pred hhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHh
Q psy6770 204 KRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYV 283 (362)
Q Consensus 204 k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la 283 (362)
...++++++.+|+++....+++||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.++++.+..+++++..+|
T Consensus 302 ~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA 381 (638)
T CHL00176 302 REQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIA 381 (638)
T ss_pred HHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 34578999999999998889999999999999999999999999999999999999999999999987777889999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 284 ARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 284 ~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
+.|.||||+||+++|++|++.|++.+...|+.+||..|+.++.
T Consensus 382 ~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 382 RRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVI 424 (638)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999873
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.81 E-value=2.1e-19 Score=173.01 Aligned_cols=120 Identities=47% Similarity=0.678 Sum_probs=113.5
Q ss_pred hhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhC
Q psy6770 206 LVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285 (362)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~ 285 (362)
..+.+++.+++++...+++.||+|||+++.+|++++||||||+.|+|++|+.++|.+||+.++.++.+..+++++.+++.
T Consensus 244 ~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~ 323 (364)
T TIGR01242 244 RTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKM 323 (364)
T ss_pred HHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHH
Confidence 45678888899888788999999999999999999999999999999999999999999999999888888999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
|+||||+||.++|++|++.|++++...|+.+||.+|++.+
T Consensus 324 t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 324 TEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999864
No 57
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1e-19 Score=167.10 Aligned_cols=90 Identities=57% Similarity=0.820 Sum_probs=86.6
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHH
Q psy6770 89 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQ 168 (362)
Q Consensus 89 ~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~ 168 (362)
+.++|-||++||+++.||||++||||||+.|+||+|+.+.|.+|++.|.+++++..++|++.++..|+|+||+||+++|.
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICT 366 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccc
Q psy6770 169 EVIMATNRAD 178 (362)
Q Consensus 169 ~a~~~~~r~~ 178 (362)
+|-+.|.|..
T Consensus 367 EAGm~AiR~~ 376 (406)
T COG1222 367 EAGMFAIRER 376 (406)
T ss_pred HHhHHHHHhc
Confidence 9999998875
No 58
>KOG0651|consensus
Probab=99.78 E-value=9.6e-20 Score=163.97 Aligned_cols=120 Identities=41% Similarity=0.629 Sum_probs=113.3
Q ss_pred hhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCC
Q psy6770 209 STITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDR 288 (362)
Q Consensus 209 ~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g 288 (362)
=+++.+|++++..++|-+|+|||+|+.||||++||||+|+++++|+|+...|..|++.+-..+.....+|.+.+.+.++|
T Consensus 257 MeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~ 336 (388)
T KOG0651|consen 257 MELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDG 336 (388)
T ss_pred HHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhc
Confidence 35788999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 289 ISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 289 ~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
|.|+|+.+.|++|.+.|+++.+..+-.+|+..++....-.
T Consensus 337 f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~~ 376 (388)
T KOG0651|consen 337 FNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQADA 376 (388)
T ss_pred cChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876654
No 59
>KOG0740|consensus
Probab=99.77 E-value=1.4e-18 Score=165.61 Aligned_cols=191 Identities=21% Similarity=0.287 Sum_probs=147.6
Q ss_pred cCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCC-hhhhhhhhhhhhhhhhhhhhc--c
Q psy6770 145 EVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLP-DRRQKRLVFSTITAKMNFMLN--I 221 (362)
Q Consensus 145 ~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~-~~~~k~~~~~~~l~~~~~~~~--~ 221 (362)
++.-..|+....|-+-.-+..+.+-|. ...|.++.-+..+....--.+ ......++.+++|.++++... .
T Consensus 216 ~iSassLtsK~~Ge~eK~vralf~vAr-------~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~ 288 (428)
T KOG0740|consen 216 NISASSLTSKYVGESEKLVRALFKVAR-------SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPD 288 (428)
T ss_pred eccHHHhhhhccChHHHHHHHHHHHHH-------hcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCC
Confidence 344566777766666444444443332 234666665544443322222 223445678888888887654 4
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHH
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQE 300 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~ 300 (362)
++|+||+|||+||.+|.|++| ||-+++|+|+|+.++|..+|+.++++.+.. .+.|++.||+.|+||||+||.++|++
T Consensus 289 drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 289 DRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred CeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 579999999999999999999 999999999999999999999999887544 46789999999999999999999999
Q ss_pred HHHHHHHhc-------------CCCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHh
Q psy6770 301 AGMHAVREN-------------RYIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFE 344 (362)
Q Consensus 301 a~~~a~~~~-------------~~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~ 344 (362)
|++-..+.. ..+++..||+.+++.++|+.+ ...++|.+|...|+
T Consensus 367 a~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg 424 (428)
T KOG0740|consen 367 AAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFG 424 (428)
T ss_pred hhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhc
Confidence 988776652 247899999999999999887 67899999999987
No 60
>KOG0732|consensus
Probab=99.75 E-value=2.5e-18 Score=177.39 Aligned_cols=123 Identities=34% Similarity=0.475 Sum_probs=109.0
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
+++++|+-|+|+..+++|+||+|||||+.+|||+.||||||+-+||++|+-++|.+|+..+.++.... ..--+..+|+.
T Consensus 390 IvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~ 469 (1080)
T KOG0732|consen 390 IVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEE 469 (1080)
T ss_pred HHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999999999999999999887633 22346779999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHhCch
Q psy6770 286 PDRISGADINAICQEAGMHAVRENR----------------YIVLPKDFEKGYKKCAGMH 329 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~----------------~~v~~~~~~~a~~~~~~~~ 329 (362)
|.||-||||+.+|.+|++.+++... ..|...||..|+.+..|+.
T Consensus 470 t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 470 TSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred ccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCC
Confidence 9999999999999999999998732 1477888888888877653
No 61
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.72 E-value=5.7e-17 Score=132.84 Aligned_cols=119 Identities=41% Similarity=0.674 Sum_probs=104.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcC-CeEEEeccccccccccCCCCCCCcHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENS-PAIIFIDEIDAIATKRFDAQTGADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~-P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~ 79 (362)
|.+|+.+|+.++.+++.++++++.+.+.+++++.++.+|+.++..+ |+||||||+|.++++. +..........+..
T Consensus 12 T~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~~~~~~~~~~~~ 88 (132)
T PF00004_consen 12 TTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPSSSSFEQRLLNQ 88 (132)
T ss_dssp HHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STSSSHHHHHHHHH
T ss_pred eHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccccccccccccce
Confidence 5799999999999999999999999999999999999999999998 9999999999999887 22234445678888
Q ss_pred HHHhccCCCCC-CCeEEEEEcCCCCCCCccccCCCcceeEEEccC
Q psy6770 80 LLNQMDGFDQT-TNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 123 (362)
Q Consensus 80 lL~~ld~l~~~-~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~ 123 (362)
++..++..... +++++|+|||.++.++++++| |||+.+|++|+
T Consensus 89 L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 89 LLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred eeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 88888887544 579999999999999999998 89999999974
No 62
>KOG0744|consensus
Probab=99.70 E-value=2.4e-17 Score=149.28 Aligned_cols=172 Identities=19% Similarity=0.300 Sum_probs=137.4
Q ss_pred CcHHHHHHhhhCC---------cEEEEechhhhhhhcCchHHHHHHHHHHHHHcC---C--eEEEeccccccccccCCCC
Q psy6770 1 YLLCTSFDTELVT---------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENS---P--AIIFIDEIDAIATKRFDAQ 66 (362)
Q Consensus 1 slLakaiA~e~~~---------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~---P--~II~iDeiD~l~~~r~~~~ 66 (362)
+.||||+|..+.+ .++++++.+++++|++||.|.+.++|+.+...- . ..++|||+|++...|....
T Consensus 191 TSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~ 270 (423)
T KOG0744|consen 191 TSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSAS 270 (423)
T ss_pred hHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhh
Confidence 4699999988765 789999999999999999999999998886532 2 3568999999999885544
Q ss_pred CCCc-HHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC--
Q psy6770 67 TGAD-REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-- 143 (362)
Q Consensus 67 ~~~~-~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-- 143 (362)
+..+ ....|+++.+|++||.++..++|++++|+|..+.+|.|+.. |.|.+.++++|+...|.+|++.++.++.-.
T Consensus 271 S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gI 348 (423)
T KOG0744|consen 271 SRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGI 348 (423)
T ss_pred cCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCe
Confidence 4333 23469999999999999999999999999999999999999 999999999999999999999888654110
Q ss_pred -----------CcC-----CHHHHHhc-CCCCcHhhHHHHHHHHHHhh
Q psy6770 144 -----------DEV-----DLEDYVAR-PDRISGADINAICQEVIMAT 174 (362)
Q Consensus 144 -----------~~~-----dl~~la~~-t~g~s~~di~~l~~~a~~~~ 174 (362)
..+ ....+... +.|+||+.|+.+---|...-
T Consensus 349 i~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y 396 (423)
T KOG0744|consen 349 ILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEY 396 (423)
T ss_pred eeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhc
Confidence 000 11222222 58999999888876655443
No 63
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=9.7e-15 Score=150.97 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=115.9
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhh--hhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~--~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|.+|+++|... ++.++.++.+.+. .+|.|+.+.+++.+|+.++...|+||||||+|.+++.+....
T Consensus 221 T~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~-- 298 (758)
T PRK11034 221 TAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-- 298 (758)
T ss_pred HHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC--
Confidence 46888888764 7888888888777 468899999999999999988899999999999998763221
Q ss_pred CcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC
Q psy6770 69 ADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS 143 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~ 143 (362)
......+++..++ ..+.+.+|++||.++ ..|+++.| ||+ .|+++.|+.+++..|++.+...+...
T Consensus 299 g~~d~~nlLkp~L-------~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~ 368 (758)
T PRK11034 299 GQVDAANLIKPLL-------SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAH 368 (758)
T ss_pred cHHHHHHHHHHHH-------hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhc
Confidence 2222334455554 346799999999864 57999999 996 79999999999999999877665444
Q ss_pred CcCCHHH-----HHhc-----CCCCcHhhHHHHHHHHH
Q psy6770 144 DEVDLED-----YVAR-----PDRISGADINAICQEVI 171 (362)
Q Consensus 144 ~~~dl~~-----la~~-----t~g~s~~di~~l~~~a~ 171 (362)
.++++.. .+.. +..+-|...-.++.+|.
T Consensus 369 h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~ 406 (758)
T PRK11034 369 HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAG 406 (758)
T ss_pred cCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHH
Confidence 3343322 1211 23444555556666654
No 64
>KOG0742|consensus
Probab=99.62 E-value=4e-15 Score=138.66 Aligned_cols=164 Identities=23% Similarity=0.370 Sum_probs=134.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCC-eEEEeccccccccccCCCCCCCcHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSP-AIIFIDEIDAIATKRFDAQTGADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P-~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~ 79 (362)
+|+|+.||...|+++..+.+.++. +.-.+....|+++|+.|+.... -++||||.|.++..|.. ..++...+..+|.
T Consensus 398 Tm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNA 474 (630)
T KOG0742|consen 398 TMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNA 474 (630)
T ss_pred hHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHH
Confidence 578999999999999999999985 4444778899999999988654 57799999999998844 3445556788999
Q ss_pred HHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC----------------
Q psy6770 80 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS---------------- 143 (362)
Q Consensus 80 lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~---------------- 143 (362)
||-.-. +.+..++++.+||+|.++|.|+-. |+|.+++||+|..++|..++..++.++-..
T Consensus 475 lLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk 550 (630)
T KOG0742|consen 475 LLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKK 550 (630)
T ss_pred HHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhh
Confidence 986544 356789999999999999999999 999999999999999999999998776321
Q ss_pred -------CcCC----HHHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 144 -------DEVD----LEDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 144 -------~~~d----l~~la~~t~g~s~~di~~l~~~a~ 171 (362)
...+ ..+.|.+|.||||.+|..++....
T Consensus 551 ~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 551 ESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQ 589 (630)
T ss_pred hhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 0111 355678899999999999986543
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.62 E-value=2.4e-15 Score=148.47 Aligned_cols=95 Identities=34% Similarity=0.444 Sum_probs=83.1
Q ss_pred hhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc-CCCCCCCCHHHHh
Q psy6770 205 RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK-MNLSDEVDLEDYV 283 (362)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~-~~~~~~~~~~~la 283 (362)
+.+++++|++||++...++++||+|||+++.||||++||||||.+|+|++|+.++|.+||+.|+.. +++ ...+
T Consensus 315 ~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l------~~~l 388 (512)
T TIGR03689 315 TTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL------DADL 388 (512)
T ss_pred HHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc------hHHH
Confidence 567899999999999888999999999999999999999999999999999999999999999974 222 2223
Q ss_pred hCCCCCCHHHHHHHHHHHHHHH
Q psy6770 284 ARPDRISGADINAICQEAGMHA 305 (362)
Q Consensus 284 ~~~~g~sgadi~~~~~~a~~~a 305 (362)
..+.|++|+++..+|+++....
T Consensus 389 ~~~~g~~~a~~~al~~~av~~~ 410 (512)
T TIGR03689 389 AEFDGDREATAAALIQRAVDHL 410 (512)
T ss_pred HHhcCCCHHHHHHHHHHHHHHH
Confidence 4579999999999999994443
No 66
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.62 E-value=1.2e-14 Score=151.45 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=102.1
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhh--hhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~--~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|.+|+++|..+ +..++.++.+.+. .+|.|+.++.++.+|+.++...|+||||||+|.+++.+...++
T Consensus 217 T~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~- 295 (731)
T TIGR02639 217 TAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG- 295 (731)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc-
Confidence 56899999987 8899999999988 4799999999999999998888999999999999977532221
Q ss_pred CcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCC-----CCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHcc
Q psy6770 69 ADREVQRILLELLNQMDGFDQTTNVKVIMATNRA-----DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~-----~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~ 139 (362)
+.....++...| .++.+.+|++||.. ...|+++.| ||. .|+++.|+.+++..|++.....
T Consensus 296 -~~~~~~~L~~~l-------~~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 296 -SMDASNLLKPAL-------SSGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred -cHHHHHHHHHHH-------hCCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 112233444333 24679999999963 367999999 997 7999999999999999976654
No 67
>KOG0738|consensus
Probab=99.62 E-value=6.6e-16 Score=143.12 Aligned_cols=104 Identities=35% Similarity=0.528 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhccCCCCC-CCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHH
Q psy6770 72 EVQRILLELLNQMDGFDQT-TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 150 (362)
Q Consensus 72 ~~~~~l~~lL~~ld~l~~~-~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~ 150 (362)
.++.-+...++.+.+-.++ ..|+|+++||.||+||.|++| ||.++|+||+|+.++|..+++..++.....++++++.
T Consensus 331 RvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~ 408 (491)
T KOG0738|consen 331 RVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLED 408 (491)
T ss_pred HHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHH
Confidence 3444455555555554344 568899999999999999999 9999999999999999999999999999999999999
Q ss_pred HHhcCCCCcHhhHHHHHHHHHHhhccc
Q psy6770 151 YVARPDRISGADINAICQEVIMATNRA 177 (362)
Q Consensus 151 la~~t~g~s~~di~~l~~~a~~~~~r~ 177 (362)
+++.+.||||+||.++|++|.+.++|+
T Consensus 409 lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 409 LAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999885
No 68
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.61 E-value=1.5e-15 Score=163.63 Aligned_cols=169 Identities=23% Similarity=0.265 Sum_probs=143.6
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhh-----------------------------------------cCchHHH--HHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKY-----------------------------------------LGEGPRM--VRD 37 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~-----------------------------------------~gese~~--l~~ 37 (362)
|+||||+|+++++||+.|+++++++++ +|+++.. |+.
T Consensus 1644 TlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~ 1723 (2281)
T CHL00206 1644 SYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITL 1723 (2281)
T ss_pred HHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhhhhhhhhHHHHHH
Confidence 689999999999999999999999755 2233333 899
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCC---CCCCeEEEEEcCCCCCCCccccCCCc
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD---QTTNVKVIMATNRADTLDPALLRPGR 114 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~---~~~~v~vi~tTn~~~~ld~al~r~gR 114 (362)
+|+.|+.++||||||||||+++.+. . ....+++|+++||+.. ...+|+||||||+|+.||||++||||
T Consensus 1724 lFelARk~SPCIIFIDEIDaL~~~d------s---~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGR 1794 (2281)
T CHL00206 1724 QFELAKAMSPCIIWIPNIHDLNVNE------S---NYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNK 1794 (2281)
T ss_pred HHHHHHHCCCeEEEEEchhhcCCCc------c---ceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCC
Confidence 9999999999999999999998652 1 1134889999999763 35689999999999999999999999
Q ss_pred ceeEEEccCCCHHHHHHHHHHHH--ccCCCCC-cCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccc
Q psy6770 115 LDRKIEFPLPDRRQKRLVFSTIT--AKMNLSD-EVDLEDYVARPDRISGADINAICQEVIMATNRAD 178 (362)
Q Consensus 115 f~~~i~i~~P~~~~r~~il~~~~--~~~~~~~-~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~ 178 (362)
||+.|+++.|+..+|.+++..++ ++..+.. .++++.+|..|.|||||||.++|++|+..+.+..
T Consensus 1795 FDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1795 LNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred CCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999888654 3444443 3589999999999999999999999999988764
No 69
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.56 E-value=5.6e-14 Score=131.37 Aligned_cols=184 Identities=16% Similarity=0.082 Sum_probs=128.0
Q ss_pred EEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhccC
Q psy6770 119 IEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFP 197 (362)
Q Consensus 119 i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~ 197 (362)
+-+-=|.-.....+.+...+..+.. -.++..+|.....|=+..-|+.+.+.|...+... ..|..+....++.....-
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~--~aPcVLFIDEIDA~~g~r 228 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKK--GKMSCLFINDLDAGAGRF 228 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhcc--CCCeEEEEehhhhcCCCC
Confidence 3333344344555556666655543 2345667888888999999999999887654221 235555555544332211
Q ss_pred C-Chhhh-hhhhhhhhhhhhhhh------------hccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHH
Q psy6770 198 L-PDRRQ-KRLVFSTITAKMNFM------------LNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263 (362)
Q Consensus 198 ~-~~~~~-k~~~~~~~l~~~~~~------------~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i 263 (362)
. ..++. .+++..+|++.||+. ....+|+||+|||+|+.||||++||||||+.+ .+|+.++|.+|
T Consensus 229 ~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eI 306 (413)
T PLN00020 229 GTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGV 306 (413)
T ss_pred CCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHH
Confidence 1 12222 344558999998863 34567999999999999999999999999965 58999999999
Q ss_pred HHHHhccCCCCCCCCHHHHhhCCCC----CCHHHHHHHHHHHHHHHHH
Q psy6770 264 FSTITAKMNLSDEVDLEDYVARPDR----ISGADINAICQEAGMHAVR 307 (362)
Q Consensus 264 ~~~~l~~~~~~~~~~~~~la~~~~g----~sgadi~~~~~~a~~~a~~ 307 (362)
|+.++++.++. ..|+..|+..+.| |+||--..+..++...-+.
T Consensus 307 L~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 307 VHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred HHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 99999998775 5789999998877 7888666666666544443
No 70
>KOG0743|consensus
Probab=99.51 E-value=6.5e-14 Score=133.02 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=118.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCC--CCcH--HHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQT--GADR--EVQRI 76 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~--~~~~--~~~~~ 76 (362)
|.++.|+|++++.+++.++.+++-. .++ |+.+.-.+... +||+|+|||+-+..++.... .... ...-.
T Consensus 249 SS~IaAmAn~L~ydIydLeLt~v~~----n~d--Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VT 320 (457)
T KOG0743|consen 249 SSFIAAMANYLNYDIYDLELTEVKL----DSD--LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVT 320 (457)
T ss_pred HHHHHHHHhhcCCceEEeeeccccC----cHH--HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceee
Confidence 6789999999999999999987753 233 77776655443 89999999998764432222 1111 12357
Q ss_pred HHHHHHhccCCCCCC--CeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCC-CCCcCCHHHHHh
Q psy6770 77 LLELLNQMDGFDQTT--NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN-LSDEVDLEDYVA 153 (362)
Q Consensus 77 l~~lL~~ld~l~~~~--~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~-~~~~~dl~~la~ 153 (362)
++.||+.+||+...+ --++|.|||+++.+||||+||||+|..|+++..+.++-+.+.+++++.-. ..---++..+..
T Consensus 321 lSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~ 400 (457)
T KOG0743|consen 321 LSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIE 400 (457)
T ss_pred hHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhh
Confidence 899999999998777 68999999999999999999999999999999999999999999997532 111112333332
Q ss_pred cCCCCcHhhHHHHH
Q psy6770 154 RPDRISGADINAIC 167 (362)
Q Consensus 154 ~t~g~s~~di~~l~ 167 (362)
. .-+||||+...+
T Consensus 401 ~-~~~tPA~V~e~l 413 (457)
T KOG0743|consen 401 E-TEVTPAQVAEEL 413 (457)
T ss_pred c-CccCHHHHHHHH
Confidence 2 447999986654
No 71
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.48 E-value=1.5e-13 Score=135.73 Aligned_cols=101 Identities=22% Similarity=0.342 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC--CcCCHH
Q psy6770 72 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS--DEVDLE 149 (362)
Q Consensus 72 ~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~--~~~dl~ 149 (362)
.....+..++.. ...+|+||+|||+++.+|++++|+||||..|++++|+.++|.+||+.++++.... .+.+++
T Consensus 345 rvl~~lL~~l~~-----~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~ 419 (489)
T CHL00195 345 RVLATFITWLSE-----KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIK 419 (489)
T ss_pred HHHHHHHHHHhc-----CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHH
Confidence 344555555542 3568999999999999999999999999999999999999999999999987543 478999
Q ss_pred HHHhcCCCCcHhhHHHHHHHHHHhhccc
Q psy6770 150 DYVARPDRISGADINAICQEVIMATNRA 177 (362)
Q Consensus 150 ~la~~t~g~s~~di~~l~~~a~~~~~r~ 177 (362)
.++..|.||||+||+++|.+|...+...
T Consensus 420 ~La~~T~GfSGAdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 420 KLSKLSNKFSGAEIEQSIIEAMYIAFYE 447 (489)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999877644
No 72
>KOG0727|consensus
Probab=99.39 E-value=6e-13 Score=117.24 Aligned_cols=106 Identities=81% Similarity=1.152 Sum_probs=97.5
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHH
Q psy6770 70 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLE 149 (362)
Q Consensus 70 ~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~ 149 (362)
......+++++ ||++...+|-||++||+.+.+|||++||||+|+.|+||+|+..+++.++.....++++.+++|++
T Consensus 276 qril~ellnqm----dgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle 351 (408)
T KOG0727|consen 276 QRILIELLNQM----DGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLE 351 (408)
T ss_pred HHHHHHHHHhc----cCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHH
Confidence 33445667776 77778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcHhhHHHHHHHHHHhhccccc
Q psy6770 150 DYVARPDRISGADINAICQEVIMATNRADT 179 (362)
Q Consensus 150 ~la~~t~g~s~~di~~l~~~a~~~~~r~~~ 179 (362)
.+..+.+..|++||.++|++|-+.+.|.+.
T Consensus 352 ~~v~rpdkis~adi~aicqeagm~avr~nr 381 (408)
T KOG0727|consen 352 DLVARPDKISGADINAICQEAGMLAVRENR 381 (408)
T ss_pred HHhcCccccchhhHHHHHHHHhHHHHHhcc
Confidence 999999999999999999999999988763
No 73
>KOG0726|consensus
Probab=99.33 E-value=8.2e-13 Score=118.56 Aligned_cols=102 Identities=52% Similarity=0.895 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHH
Q psy6770 73 VQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYV 152 (362)
Q Consensus 73 ~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la 152 (362)
+..++|+ +|+++..+.|-||.+||+.+.+|||++||||+|+.|+||.|+...++.|++.|..++.+..+++++.+.
T Consensus 309 mLELLNQ----ldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li 384 (440)
T KOG0726|consen 309 MLELLNQ----LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELI 384 (440)
T ss_pred HHHHHHh----ccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHh
Confidence 3455654 478888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcHhhHHHHHHHHHHhhcccc
Q psy6770 153 ARPDRISGADINAICQEVIMATNRAD 178 (362)
Q Consensus 153 ~~t~g~s~~di~~l~~~a~~~~~r~~ 178 (362)
-.-..+||+||+++|.+|-+.|.|..
T Consensus 385 ~~kddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 385 MTKDDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred hcccccccccHHHHHHHHhHHHHHHH
Confidence 99999999999999999998887764
No 74
>CHL00181 cbbX CbbX; Provisional
Probab=99.32 E-value=1.7e-11 Score=114.04 Aligned_cols=161 Identities=16% Similarity=0.222 Sum_probs=116.8
Q ss_pred CcHHHHHHhhhC-------CcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHH
Q psy6770 1 YLLCTSFDTELV-------TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREV 73 (362)
Q Consensus 1 slLakaiA~e~~-------~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~ 73 (362)
|++|+++|..+. .+++.++.+++.+.|+|+++..++.+|+.|. ++||||||+|.++..++. . +..
T Consensus 73 T~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~--~---~~~ 144 (287)
T CHL00181 73 TTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE--R---DYG 144 (287)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc--c---chH
Confidence 578999988753 3699999999999999999888888888763 489999999999754321 1 122
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEEcCCC-----CCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCC-cCC
Q psy6770 74 QRILLELLNQMDGFDQTTNVKVIMATNRA-----DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSD-EVD 147 (362)
Q Consensus 74 ~~~l~~lL~~ld~l~~~~~v~vi~tTn~~-----~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~-~~d 147 (362)
......|+..|+. ...+++||++++.. ..++|++.+ ||+..|+|+.++.+++.+|++.++.+....- +..
T Consensus 145 ~e~~~~L~~~me~--~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~ 220 (287)
T CHL00181 145 SEAIEILLQVMEN--QRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA 220 (287)
T ss_pred HHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH
Confidence 4566677777764 34567777776532 134699999 9999999999999999999999998754321 111
Q ss_pred HHHHHh----c--CCCCc-HhhHHHHHHHHHHh
Q psy6770 148 LEDYVA----R--PDRIS-GADINAICQEVIMA 173 (362)
Q Consensus 148 l~~la~----~--t~g~s-~~di~~l~~~a~~~ 173 (362)
...+.. . ...|. ++++++++..+...
T Consensus 221 ~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 221 EKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 222222 1 24555 79999999888764
No 75
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.28 E-value=8e-11 Score=108.33 Aligned_cols=160 Identities=17% Similarity=0.207 Sum_probs=113.1
Q ss_pred CcHHHHHHhhh-------CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHH
Q psy6770 1 YLLCTSFDTEL-------VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREV 73 (362)
Q Consensus 1 slLakaiA~e~-------~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~ 73 (362)
|++|+++|+++ ..++++++++++.+.|+|+++..++.+|+.|. ++||||||+|.+.... .....
T Consensus 56 TtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~------~~~~~ 126 (261)
T TIGR02881 56 TTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG------EKDFG 126 (261)
T ss_pred HHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC------ccchH
Confidence 57899999864 24899999999999999999999999998874 5899999999996321 11122
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEEcCCC-----CCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCC-cCC
Q psy6770 74 QRILLELLNQMDGFDQTTNVKVIMATNRA-----DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSD-EVD 147 (362)
Q Consensus 74 ~~~l~~lL~~ld~l~~~~~v~vi~tTn~~-----~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~-~~d 147 (362)
...+..++..|+.. ..++++|+++... ..++|++.+ ||...|+|+.++.+++.+|++.++......- +..
T Consensus 127 ~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a 202 (261)
T TIGR02881 127 KEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA 202 (261)
T ss_pred HHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH
Confidence 45677788888753 3455555554321 236889999 9999999999999999999999998654321 111
Q ss_pred HHHHHh---------cCCCCcHhhHHHHHHHHHHh
Q psy6770 148 LEDYVA---------RPDRISGADINAICQEVIMA 173 (362)
Q Consensus 148 l~~la~---------~t~g~s~~di~~l~~~a~~~ 173 (362)
+..++. ....-.+..+.+++..|...
T Consensus 203 ~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 203 KWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 223321 11223466677777776543
No 76
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.23 E-value=8.6e-11 Score=109.24 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=114.2
Q ss_pred CcHHHHHHhhhC-------CcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHH
Q psy6770 1 YLLCTSFDTELV-------TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREV 73 (362)
Q Consensus 1 slLakaiA~e~~-------~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~ 73 (362)
|++|+++|..+. -+++.++++++.+.|.|+++..++.+|+.|. +++|||||+|.+.+.+.. ....
T Consensus 72 T~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~-----~~~~ 143 (284)
T TIGR02880 72 TTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE-----RDYG 143 (284)
T ss_pred HHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc-----cchH
Confidence 468888887763 2799999999999999999888888888773 489999999998754311 1122
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEEcCC--CC---CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCC-cCC
Q psy6770 74 QRILLELLNQMDGFDQTTNVKVIMATNR--AD---TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSD-EVD 147 (362)
Q Consensus 74 ~~~l~~lL~~ld~l~~~~~v~vi~tTn~--~~---~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~-~~d 147 (362)
......|++.|+. ...++++|++++. ++ .++|++.+ ||...|+||.++.+++..|++.++++....- ...
T Consensus 144 ~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a 219 (284)
T TIGR02880 144 QEAIEILLQVMEN--QRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA 219 (284)
T ss_pred HHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH
Confidence 3556677777764 3457778877654 23 34899999 9999999999999999999999998754321 111
Q ss_pred HHHHHhc------CCCC-cHhhHHHHHHHHHHh
Q psy6770 148 LEDYVAR------PDRI-SGADINAICQEVIMA 173 (362)
Q Consensus 148 l~~la~~------t~g~-s~~di~~l~~~a~~~ 173 (362)
+..+... ...+ .+.++++++..++..
T Consensus 220 ~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 220 EEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 2222221 1223 367788888777654
No 77
>KOG0739|consensus
Probab=99.20 E-value=2.2e-12 Score=116.22 Aligned_cols=87 Identities=26% Similarity=0.440 Sum_probs=79.6
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHH
Q psy6770 89 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAIC 167 (362)
Q Consensus 89 ~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~ 167 (362)
.+.+|+|+++||.||.+|.|++| ||+++|+||+|+...|..+++.+++..+.. .+.|+..|+..|+||||+||.-++
T Consensus 266 d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivV 343 (439)
T KOG0739|consen 266 DNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVV 343 (439)
T ss_pred CCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEe
Confidence 35689999999999999999999 999999999999999999999999887654 456899999999999999999999
Q ss_pred HHHHHhhccc
Q psy6770 168 QEVIMATNRA 177 (362)
Q Consensus 168 ~~a~~~~~r~ 177 (362)
++|++..+|.
T Consensus 344 rDalmePvRk 353 (439)
T KOG0739|consen 344 RDALMEPVRK 353 (439)
T ss_pred hhhhhhhHHH
Confidence 9999987765
No 78
>KOG0742|consensus
Probab=99.13 E-value=2.2e-10 Score=107.40 Aligned_cols=80 Identities=25% Similarity=0.443 Sum_probs=65.5
Q ss_pred cCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC----C-------------------CC
Q psy6770 221 IGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS----D-------------------EV 277 (362)
Q Consensus 221 ~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~----~-------------------~~ 277 (362)
+.+++++.|||+|..+|.|+-- |||..|+||||.+++|..++..|+.++-.. . ..
T Consensus 483 SrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~ 560 (630)
T KOG0742|consen 483 SRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGF 560 (630)
T ss_pred ccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccc
Confidence 3468899999999999999999 999999999999999999999999543211 0 11
Q ss_pred C----HHHHhhCCCCCCHHHHHHHHHHHH
Q psy6770 278 D----LEDYVARPDRISGADINAICQEAG 302 (362)
Q Consensus 278 ~----~~~la~~~~g~sgadi~~~~~~a~ 302 (362)
+ +.+.|++|+||||.+|..++....
T Consensus 561 ~t~~~~~EaAkkTeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 561 DTGRKCSEAAKKTEGFSGREIAKLVASVQ 589 (630)
T ss_pred hHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 2 456788999999999999876443
No 79
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.11 E-value=5.2e-10 Score=117.67 Aligned_cols=126 Identities=26% Similarity=0.351 Sum_probs=94.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhh---------hhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFV---------QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADR 71 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~---------~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~ 71 (362)
|++|++||++++.+|+.++.+.+. ..|.|.....+...|..+....| ||||||||.+.+... .+.
T Consensus 361 T~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-----~~~ 434 (775)
T TIGR00763 361 TSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-----GDP 434 (775)
T ss_pred HHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-----CCH
Confidence 579999999999999999865432 35778777788888988877776 889999999985421 111
Q ss_pred HHHHHHHHHHHh------ccCC----CCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHH
Q psy6770 72 EVQRILLELLNQ------MDGF----DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 137 (362)
Q Consensus 72 ~~~~~l~~lL~~------ld~l----~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~ 137 (362)
...+.++|.. +|.. ...+++++|+|||.++.+++++++ ||. .|+|+.|+.+++..|++.++
T Consensus 435 --~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 435 --ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred --HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 1233333321 0110 012578999999999999999999 995 78999999999999998776
No 80
>KOG0743|consensus
Probab=99.07 E-value=2.7e-10 Score=108.66 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=71.0
Q ss_pred hhhhhhhhhhhhhccC--CeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh
Q psy6770 207 VFSTITAKMNFMLNIG--NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVA 284 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~--~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~ 284 (362)
-++.||+.+||+.+.. -=+||.|||+++.|||||+||||.|.|||+++...++-+.+++.|++--. +..-++++.+
T Consensus 320 TlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~ 397 (457)
T KOG0743|consen 320 TLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIER 397 (457)
T ss_pred ehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHH
Confidence 4788999999997655 46899999999999999999999999999999999999999999998422 1222444444
Q ss_pred CC--CCCCHHHHHH
Q psy6770 285 RP--DRISGADINA 296 (362)
Q Consensus 285 ~~--~g~sgadi~~ 296 (362)
.- .-.|+||+..
T Consensus 398 l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 398 LIEETEVTPAQVAE 411 (457)
T ss_pred HhhcCccCHHHHHH
Confidence 33 3358999875
No 81
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.02 E-value=1.2e-09 Score=115.62 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=100.7
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhh--hhhcCchHHHHHHHHHHHHH-cCCeEEEeccccccccccCCCCC
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKE-NSPAIIFIDEIDAIATKRFDAQT 67 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~--~~~~gese~~l~~~F~~a~~-~~P~II~iDeiD~l~~~r~~~~~ 67 (362)
|.||+++|..+ +.+++.++.+.+. .+|.|+.++.++.+|+.+.. ..|+||||||+|.+++.+++. +
T Consensus 213 T~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~ 291 (857)
T PRK10865 213 TAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-G 291 (857)
T ss_pred HHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-c
Confidence 56899999988 8899999999877 45889999999999998654 568999999999998775322 1
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccC
Q psy6770 68 GADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 140 (362)
Q Consensus 68 ~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~ 140 (362)
+. ....++...| ..+.+.+|++|+..+ .+|+|+.| ||+ .|.++.|+.+++..|++.+...+
T Consensus 292 ~~--d~~~~lkp~l-------~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 292 AM--DAGNMLKPAL-------ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred ch--hHHHHhcchh-------hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 11 1233443333 456899999999876 58999999 997 58899999999999998877654
No 82
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.97 E-value=1.9e-09 Score=113.98 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=97.0
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhhh--hhcCchHHHHHHHHHHHHH-cCCeEEEeccccccccccCCCCC
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFVQ--KYLGEGPRMVRDVFRLAKE-NSPAIIFIDEIDAIATKRFDAQT 67 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~~--~~~gese~~l~~~F~~a~~-~~P~II~iDeiD~l~~~r~~~~~ 67 (362)
|.+|+.+|..+ +..++.++.+.+.. ++.|+.++.++.+|+.++. ..++||||||+|.+++.++..+
T Consensus 222 Tal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~- 300 (852)
T TIGR03345 222 TAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG- 300 (852)
T ss_pred HHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-
Confidence 46788888775 36688898888763 6889999999999999975 4689999999999998764221
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCC-----CCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccC
Q psy6770 68 GADREVQRILLELLNQMDGFDQTTNVKVIMATNRA-----DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 140 (362)
Q Consensus 68 ~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~-----~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~ 140 (362)
..+ ...++...| ..+.+.+|+||+.. -.+|+|+.| ||. .|.++.|+.+++..|++.+...+
T Consensus 301 ~~d--~~n~Lkp~l-------~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~ 366 (852)
T TIGR03345 301 QGD--AANLLKPAL-------ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVL 366 (852)
T ss_pred ccc--HHHHhhHHh-------hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhh
Confidence 122 123333333 35689999999864 358999999 995 79999999999999987666543
No 83
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.93 E-value=4.9e-09 Score=111.39 Aligned_cols=129 Identities=17% Similarity=0.258 Sum_probs=98.9
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhh--hhhcCchHHHHHHHHHHHHHc-CCeEEEeccccccccccCCCCC
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKEN-SPAIIFIDEIDAIATKRFDAQT 67 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~--~~~~gese~~l~~~F~~a~~~-~P~II~iDeiD~l~~~r~~~~~ 67 (362)
|.+|+++|..+ +.+++.++.+.+. .+|.|+.++.++.+|+.+... .|+||||||+|.|++.++..+
T Consensus 208 T~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~- 286 (852)
T TIGR03346 208 TAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG- 286 (852)
T ss_pred HHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-
Confidence 46788888875 7899999988886 568899999999999998764 589999999999987543211
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCC
Q psy6770 68 GADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL 142 (362)
Q Consensus 68 ~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~ 142 (362)
. .....++..++ ..+.+.+|++|+..+ ..|+++.| ||. .|.++.|+.+++..|++.+...+..
T Consensus 287 -~-~d~~~~Lk~~l-------~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~ 354 (852)
T TIGR03346 287 -A-MDAGNMLKPAL-------ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEV 354 (852)
T ss_pred -h-hHHHHHhchhh-------hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhcc
Confidence 1 11122222222 356799999999863 58999999 996 5899999999999999987666543
No 84
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.86 E-value=8.8e-09 Score=109.11 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=97.9
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhh--hhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~--~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|.+|+++|... +.+++.++.+.++ .+|.|+.++.++.+|+.++...|+||||||+|.+++.+...+ .
T Consensus 214 Tal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~ 292 (821)
T CHL00095 214 TAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-A 292 (821)
T ss_pred HHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-c
Confidence 46888888876 4899999999887 478999999999999999888899999999999997653221 1
Q ss_pred CcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHH
Q psy6770 69 ADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 137 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~ 137 (362)
. ....++...| ..+.+.+|++|+... ..|+++.+ ||. .|.++.|+.++...|++...
T Consensus 293 ~--~~a~lLkp~l-------~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 293 I--DAANILKPAL-------ARGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred c--cHHHHhHHHH-------hCCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHH
Confidence 1 2234444443 346788999998764 57999999 996 57999999999999987654
No 85
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.68 E-value=2.1e-07 Score=88.58 Aligned_cols=150 Identities=16% Similarity=0.177 Sum_probs=102.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|.||+++|+++++.+..++++.+.. ...+..++... ..++||||||+|.+.... ...+..+
T Consensus 65 T~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-----------~e~l~~~ 125 (328)
T PRK00080 65 TTLANIIANEMGVNIRITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPVV-----------EEILYPA 125 (328)
T ss_pred HHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHhc--ccCCEEEEecHhhcchHH-----------HHHHHHH
Confidence 5799999999999998887764421 22344444433 346899999999884321 1222223
Q ss_pred HHhc------cC-CC------CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcC
Q psy6770 81 LNQM------DG-FD------QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEV 146 (362)
Q Consensus 81 L~~l------d~-l~------~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~ 146 (362)
+... +. .. .-+++.+|++||.+..+++++++ ||...++++.|+.+++.++++......++. ++.
T Consensus 126 ~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~ 203 (328)
T PRK00080 126 MEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEE 203 (328)
T ss_pred HHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHH
Confidence 2221 10 00 11357889999999999999998 999999999999999999999888876544 222
Q ss_pred CHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 147 DLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 147 dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
.+..++..+.|.. ..+..+++.+..
T Consensus 204 ~~~~ia~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 204 GALEIARRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred HHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 3677887877744 666666665443
No 86
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.60 E-value=4.6e-07 Score=85.16 Aligned_cols=150 Identities=14% Similarity=0.158 Sum_probs=99.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|.||+++|++++.++..++++..... ..+...+... ..+.++||||+|.+.+.. ...+..+
T Consensus 44 T~la~~ia~~~~~~~~~~~~~~~~~~------~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~ 104 (305)
T TIGR00635 44 TTLAHIIANEMGVNLKITSGPALEKP------GDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPA 104 (305)
T ss_pred HHHHHHHHHHhCCCEEEeccchhcCc------hhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHH
Confidence 57999999999999888776543221 1222222222 346899999999885321 1122222
Q ss_pred HHhccC------------C-CCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcC
Q psy6770 81 LNQMDG------------F-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEV 146 (362)
Q Consensus 81 L~~ld~------------l-~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~ 146 (362)
+..... + ...+++.+|++||.++.+++++++ ||...+.++.|+.++..++++......+.. ++.
T Consensus 105 ~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~ 182 (305)
T TIGR00635 105 MEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE 182 (305)
T ss_pred HhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH
Confidence 221110 0 012358899999999999999999 999999999999999999999888755443 222
Q ss_pred CHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 147 DLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 147 dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
.++.++..+.|.. ..+..++..+..
T Consensus 183 al~~ia~~~~G~p-R~~~~ll~~~~~ 207 (305)
T TIGR00635 183 AALEIARRSRGTP-RIANRLLRRVRD 207 (305)
T ss_pred HHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 4667888877754 555666665543
No 87
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.56 E-value=2.9e-07 Score=90.11 Aligned_cols=156 Identities=13% Similarity=0.218 Sum_probs=99.5
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhhhhhhcCchH-HHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEGP-RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l~~~~~gese-~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|.|++++|+++ +..++.+++.++...+.+... ..+..+.+..+ .+.+|+|||+|.+.++. ...
T Consensus 150 ThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~~~ 218 (405)
T TIGR00362 150 THLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE---------RTQ 218 (405)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH---------HHH
Confidence 56899999887 788999999887765433211 11222222222 35899999999886432 111
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEcCCCCC---CCccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCC-CcCCH
Q psy6770 75 RILLELLNQMDGFDQTTNVKVIMATNRADT---LDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDL 148 (362)
Q Consensus 75 ~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~---ld~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl 148 (362)
..+..+++.+. ..+..++|.++..|.. +++.+++ ||. ..++++.|+.++|..|++..+...+.. ++..+
T Consensus 219 ~~l~~~~n~~~---~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l 293 (405)
T TIGR00362 219 EEFFHTFNALH---ENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVL 293 (405)
T ss_pred HHHHHHHHHHH---HCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 22333333322 2334556666655654 5678888 996 479999999999999999998876543 23345
Q ss_pred HHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 149 EDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 149 ~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
+.++.... -+..++..++......
T Consensus 294 ~~ia~~~~-~~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 294 EFIAKNIR-SNVRELEGALNRLLAY 317 (405)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 66676544 3567777777665443
No 88
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.53 E-value=1.1e-06 Score=85.50 Aligned_cols=172 Identities=19% Similarity=0.288 Sum_probs=102.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhh-hhcCch-HHHHHHHHHHH----HHcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA----KENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~-~~~ges-e~~l~~~F~~a----~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|+||+++|..++++|+.++++.+.. .|+|+. +..+..+++.+ ....++||||||||.+..++.+.+...+....
T Consensus 122 T~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~ 201 (412)
T PRK05342 122 TLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGE 201 (412)
T ss_pred HHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccH
Confidence 5799999999999999999998764 588875 44456665532 34468999999999998774332222221112
Q ss_pred HHHHHHHHhccCC-----------CCCCCeEEEEEcCCCCC---------------------------------------
Q psy6770 75 RILLELLNQMDGF-----------DQTTNVKVIMATNRADT--------------------------------------- 104 (362)
Q Consensus 75 ~~l~~lL~~ld~l-----------~~~~~v~vi~tTn~~~~--------------------------------------- 104 (362)
.+.+.||..|++- ......++|.|+|-..-
T Consensus 202 ~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~ 281 (412)
T PRK05342 202 GVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGEL 281 (412)
T ss_pred HHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHH
Confidence 3445555555531 01123455566554110
Q ss_pred -------------CCccccCCCcceeEEEccCCCHHHHHHHHHH----HHcc-------CCCC---CcCCHHHHHhc--C
Q psy6770 105 -------------LDPALLRPGRLDRKIEFPLPDRRQKRLVFST----ITAK-------MNLS---DEVDLEDYVAR--P 155 (362)
Q Consensus 105 -------------ld~al~r~gRf~~~i~i~~P~~~~r~~il~~----~~~~-------~~~~---~~~dl~~la~~--t 155 (362)
+.|+++. |++.++.|...+.++..+|+.. .++. .++. ++.-+..+++. .
T Consensus 282 ~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~ 359 (412)
T PRK05342 282 LKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIE 359 (412)
T ss_pred HHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCC
Confidence 2345554 8888888888888888888862 2221 1111 11124445553 3
Q ss_pred CCCcHhhHHHHHHHHHHhh
Q psy6770 156 DRISGADINAICQEVIMAT 174 (362)
Q Consensus 156 ~g~s~~di~~l~~~a~~~~ 174 (362)
.++-.+.|+.+++..+...
T Consensus 360 ~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 360 RKTGARGLRSILEEILLDV 378 (412)
T ss_pred CCCCCchHHHHHHHHhHHH
Confidence 4555666666666655443
No 89
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.52 E-value=3.5e-07 Score=90.75 Aligned_cols=157 Identities=13% Similarity=0.214 Sum_probs=99.9
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhhhhhhcCchHH-HHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEGPR-MVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l~~~~~gese~-~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|.|++++|+++ +..++.+++.++...+.+.... ....+.+..+ .+.+|+|||+|.+.++. ...
T Consensus 162 ThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~~~ 230 (450)
T PRK00149 162 THLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE---------RTQ 230 (450)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCH---------HHH
Confidence 56899999988 6779999999887655433211 1222222222 57899999999986432 111
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEcCCCCC---CCccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCC-CcCCH
Q psy6770 75 RILLELLNQMDGFDQTTNVKVIMATNRADT---LDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDL 148 (362)
Q Consensus 75 ~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~---ld~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl 148 (362)
..+..+++.+. ..+..++|.++..|.. +++.+++ ||. ..+++..|+.++|..|++..+...+.. ++.-+
T Consensus 231 ~~l~~~~n~l~---~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l 305 (450)
T PRK00149 231 EEFFHTFNALH---EAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVL 305 (450)
T ss_pred HHHHHHHHHHH---HCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 22223332222 2334456666555655 6788888 996 589999999999999999988765433 22235
Q ss_pred HHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 149 EDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 149 ~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
+.++.... =+..++..++......+
T Consensus 306 ~~ia~~~~-~~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 306 EFIAKNIT-SNVRELEGALNRLIAYA 330 (450)
T ss_pred HHHHcCcC-CCHHHHHHHHHHHHHHH
Confidence 66666644 36666777766655443
No 90
>KOG0744|consensus
Probab=98.44 E-value=6.9e-07 Score=82.00 Aligned_cols=204 Identities=14% Similarity=0.122 Sum_probs=131.2
Q ss_pred eEEEccCCCHHHHHHHHHHHHccCCCC----------CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccC
Q psy6770 117 RKIEFPLPDRRQKRLVFSTITAKMNLS----------DEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLR 186 (362)
Q Consensus 117 ~~i~i~~P~~~~r~~il~~~~~~~~~~----------~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~ 186 (362)
+.|-+.-|.-.....+.+.+..+..+. -+++-+.+-.+.-+=||.-+..+.++..........+=.-.|.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeH
Confidence 456677677777778888777765432 1234455666666667777777777654432221111011111
Q ss_pred cc-ch--hhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHH
Q psy6770 187 PG-RL--DRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263 (362)
Q Consensus 187 ~~-~l--~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i 263 (362)
+- -| .+.--......+---|++|++|++||.+....+|++++++|..+.||.|+.- |-|-+.|++.|...+|.+|
T Consensus 258 EVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~I 335 (423)
T KOG0744|consen 258 EVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEI 335 (423)
T ss_pred HHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHH
Confidence 10 00 0100011112234457999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHhccCC-------------CC-----CCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy6770 264 FSTITAKMN-------------LS-----DEVDLEDYVAR-PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324 (362)
Q Consensus 264 ~~~~l~~~~-------------~~-----~~~~~~~la~~-~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~ 324 (362)
++.++..+- .. .+.....++.. +.|.||.-|+.+-.-|- |..-...+|+..+|..|+..
T Consensus 336 lkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 336 LKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLE 413 (423)
T ss_pred HHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHH--HhccCCCccChHHHHHHHHH
Confidence 999883220 00 11122333443 59999999998654332 11223358899999888654
No 91
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.44 E-value=1.4e-06 Score=91.57 Aligned_cols=126 Identities=19% Similarity=0.288 Sum_probs=88.6
Q ss_pred CcHHHHHHhhhCCcEEEEechhhh---------hhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFV---------QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADR 71 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~---------~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~ 71 (362)
|.+++++|+.++.+|+.++.+... ..|.|.....+...+..+....| ||+|||+|.+..... .+.
T Consensus 363 Ttl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g~~ 436 (784)
T PRK10787 363 TSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----GDP 436 (784)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----CCH
Confidence 578999999999999998876532 23566555555556666555554 789999999865421 111
Q ss_pred HHHHHHHHHHHh------ccCC----CCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHc
Q psy6770 72 EVQRILLELLNQ------MDGF----DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA 138 (362)
Q Consensus 72 ~~~~~l~~lL~~------ld~l----~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~ 138 (362)
...+.++++. .|.+ ..-+++++|+|+|.. .|+++++. ||. .|.+..++.++..+|++.++.
T Consensus 437 --~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 437 --ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred --HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 2334444431 0000 122689999999987 59999999 995 789999999999999988874
No 92
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.43 E-value=1.3e-06 Score=82.47 Aligned_cols=109 Identities=24% Similarity=0.342 Sum_probs=83.1
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcC----CeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENS----PAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~----P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|.||+.||++++++|..+|.... +.+.++.+|+.|+... ..|+|+|||+.+-... ...
T Consensus 62 TTlA~liA~~~~~~f~~~sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-----------QD~ 123 (436)
T COG2256 62 TTLARLIAGTTNAAFEALSAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-----------QDA 123 (436)
T ss_pred HHHHHHHHHhhCCceEEeccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-----------hhh
Confidence 57999999999999999998433 3578999999996543 4899999999884322 122
Q ss_pred HHHHHHhccCCCCCCCeEEEEE-cCCCC-CCCccccCCCcceeEEEccCCCHHHHHHHHHHHH
Q psy6770 77 LLELLNQMDGFDQTTNVKVIMA-TNRAD-TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 137 (362)
Q Consensus 77 l~~lL~~ld~l~~~~~v~vi~t-Tn~~~-~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~ 137 (362)
||..+ +++.|++|++ |..|. .+.+|+++ |. .++++.+-+.++...+++..+
T Consensus 124 ---lLp~v----E~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 124 ---LLPHV----ENGTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred ---hhhhh----cCCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHH
Confidence 33333 4677888875 55564 88999999 87 678899999999999988733
No 93
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.43 E-value=1.8e-06 Score=83.82 Aligned_cols=171 Identities=19% Similarity=0.277 Sum_probs=103.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhh-hhcCch-HHHHHHHHHHH----HHcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA----KENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~-~~~ges-e~~l~~~F~~a----~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|+||+++|..++++|..++++.+.. .|+|+. +..+..+++.+ ....|+||||||+|.+.+++.+.+...+....
T Consensus 130 T~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 130 TLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccch
Confidence 5799999999999999999988763 588874 55566665533 34468999999999999865433222111112
Q ss_pred HHHHHHHHhccCCC-----------CCCCeEEEEEcCCCC----------------------------------------
Q psy6770 75 RILLELLNQMDGFD-----------QTTNVKVIMATNRAD---------------------------------------- 103 (362)
Q Consensus 75 ~~l~~lL~~ld~l~-----------~~~~v~vi~tTn~~~---------------------------------------- 103 (362)
.+.+.||+.|++.. ...+.++|.|+|-..
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~ 289 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLR 289 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHH
Confidence 34444555454421 123467777777610
Q ss_pred ----------CCCccccCCCcceeEEEccCCCHHHHHHHHHHH----HccC-------CCC---CcCCHHHHHhc--CCC
Q psy6770 104 ----------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI----TAKM-------NLS---DEVDLEDYVAR--PDR 157 (362)
Q Consensus 104 ----------~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~----~~~~-------~~~---~~~dl~~la~~--t~g 157 (362)
-+.|+++. |++.++.|...+.++..+|+..- ++.+ ++. ++.-++.+++. ...
T Consensus 290 ~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~ 367 (413)
T TIGR00382 290 QVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERK 367 (413)
T ss_pred HHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCC
Confidence 02355555 88888888888888888877542 2211 111 11124445554 344
Q ss_pred CcHhhHHHHHHHHHHh
Q psy6770 158 ISGADINAICQEVIMA 173 (362)
Q Consensus 158 ~s~~di~~l~~~a~~~ 173 (362)
+-.+.|+.+++..++.
T Consensus 368 ~GAR~Lr~iie~~l~~ 383 (413)
T TIGR00382 368 TGARGLRSIVEGLLLD 383 (413)
T ss_pred CCchHHHHHHHHhhHH
Confidence 5556666666665543
No 94
>PRK04195 replication factor C large subunit; Provisional
Probab=98.40 E-value=3.2e-06 Score=84.65 Aligned_cols=148 Identities=19% Similarity=0.244 Sum_probs=98.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHH------cCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE------NSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~------~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|.+|+++|+++|.+++.+++++... ...++.+...+.. ..+.+|+|||+|.+..+. +.
T Consensus 53 Ttla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~--- 116 (482)
T PRK04195 53 TSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DR--- 116 (482)
T ss_pred HHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------ch---
Confidence 4689999999999999999987542 1233433333322 247899999999986421 11
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc-cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHH
Q psy6770 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDP-ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYV 152 (362)
Q Consensus 75 ~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~-al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la 152 (362)
..+..++..++ ..+..+|.++|.++.+++ .+++ |+ ..|.|+.|+..+...+++..+...++. ++..+..++
T Consensus 117 ~~~~aL~~~l~----~~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia 189 (482)
T PRK04195 117 GGARAILELIK----KAKQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIA 189 (482)
T ss_pred hHHHHHHHHHH----cCCCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 12333333333 234457778899998887 5654 44 679999999999999999888766543 223466777
Q ss_pred hcCCCCcHhhHHHHHHHHHHhhc
Q psy6770 153 ARPDRISGADINAICQEVIMATN 175 (362)
Q Consensus 153 ~~t~g~s~~di~~l~~~a~~~~~ 175 (362)
..+ ++|+..+++.....+.
T Consensus 190 ~~s----~GDlR~ain~Lq~~a~ 208 (482)
T PRK04195 190 ERS----GGDLRSAINDLQAIAE 208 (482)
T ss_pred HHc----CCCHHHHHHHHHHHhc
Confidence 665 4577777665554433
No 95
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.36 E-value=2.3e-06 Score=86.35 Aligned_cols=154 Identities=17% Similarity=0.234 Sum_probs=97.1
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHH
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQR 75 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~ 75 (362)
|.|++|||+++ |..++++++.+|...+..........-|.. +-.++.+|+||||+.+..+. ....
T Consensus 328 THLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~gke---------~tqe 397 (617)
T PRK14086 328 THLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLEDKE---------STQE 397 (617)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccCCH---------HHHH
Confidence 56899999987 578899999998876654322211122332 12346999999999886443 1112
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEcCC-CC---CCCccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCCCcCC-H
Q psy6770 76 ILLELLNQMDGFDQTTNVKVIMATNR-AD---TLDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLSDEVD-L 148 (362)
Q Consensus 76 ~l~~lL~~ld~l~~~~~v~vi~tTn~-~~---~ld~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~~~~d-l 148 (362)
.+-.+++.+. ..++-+| .|+|. |. .+++.|++ ||. ..+.|..|+.+.|..|++..+....+.-..+ +
T Consensus 398 eLF~l~N~l~---e~gk~II-ITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi 471 (617)
T PRK14086 398 EFFHTFNTLH---NANKQIV-LSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVL 471 (617)
T ss_pred HHHHHHHHHH---hcCCCEE-EecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 2333443332 2233344 45555 33 56888998 995 5668999999999999999888766542223 4
Q ss_pred HHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 149 EDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 149 ~~la~~t~g~s~~di~~l~~~a~ 171 (362)
+.|+.+.. =+..+|..++....
T Consensus 472 ~yLa~r~~-rnvR~LegaL~rL~ 493 (617)
T PRK14086 472 EFIASRIS-RNIRELEGALIRVT 493 (617)
T ss_pred HHHHHhcc-CCHHHHHHHHHHHH
Confidence 45555533 35667776666544
No 96
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.31 E-value=5.9e-06 Score=73.08 Aligned_cols=145 Identities=22% Similarity=0.254 Sum_probs=89.5
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
++||+.||+++|++|..++++.+-.. .-+..++...+ ...|+||||||.+-.. ...++.
T Consensus 64 TTLA~IIA~e~~~~~~~~sg~~i~k~------~dl~~il~~l~--~~~ILFIDEIHRlnk~-----------~qe~Ll-- 122 (233)
T PF05496_consen 64 TTLARIIANELGVNFKITSGPAIEKA------GDLAAILTNLK--EGDILFIDEIHRLNKA-----------QQEILL-- 122 (233)
T ss_dssp HHHHHHHHHHCT--EEEEECCC--SC------HHHHHHHHT----TT-EEEECTCCC--HH-----------HHHHHH--
T ss_pred hHHHHHHHhccCCCeEeccchhhhhH------HHHHHHHHhcC--CCcEEEEechhhccHH-----------HHHHHH--
Confidence 46999999999999999998654321 22333333332 4589999999988422 123333
Q ss_pred HHhccCCC------C----------CCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-
Q psy6770 81 LNQMDGFD------Q----------TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS- 143 (362)
Q Consensus 81 L~~ld~l~------~----------~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~- 143 (362)
..|++.. . -++.-+|++|++...+.+.++. ||.....+...+.++-..|++......++.
T Consensus 123 -pamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i 199 (233)
T PF05496_consen 123 -PAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEI 199 (233)
T ss_dssp -HHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE
T ss_pred -HHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCc
Confidence 3333220 1 1357899999999999999999 999999999999999999999887776654
Q ss_pred CcCCHHHHHhcCCCCcHhhHHHHHHHH
Q psy6770 144 DEVDLEDYVARPDRISGADINAICQEV 170 (362)
Q Consensus 144 ~~~dl~~la~~t~g~s~~di~~l~~~a 170 (362)
++.....+|.++.| ||.-..++++.+
T Consensus 200 ~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 200 DEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 22235677888776 455555555543
No 97
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.3e-06 Score=85.40 Aligned_cols=146 Identities=15% Similarity=0.190 Sum_probs=100.5
Q ss_pred CcHHHHHHhhhCC-----------------------------cEEEEechhhhhhhcCchHHHHHHHHHHHHH----cCC
Q psy6770 1 YLLCTSFDTELVT-----------------------------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSP 47 (362)
Q Consensus 1 slLakaiA~e~~~-----------------------------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P 47 (362)
+++|+.+|+.++| ++++++.++- .+...++++.+.+.. .+.
T Consensus 52 TTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~ 125 (700)
T PRK12323 52 TTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRF 125 (700)
T ss_pred HHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCc
Confidence 3678888888877 4555555421 123445555555432 234
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHH
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 127 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~ 127 (362)
.|++|||+|.+.. ...|.||..|+. ...++++|.+||.++.|.+.+++ |+ ..+.|..++.+
T Consensus 126 KViIIDEah~Ls~--------------~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~e 186 (700)
T PRK12323 126 KVYMIDEVHMLTN--------------HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPG 186 (700)
T ss_pred eEEEEEChHhcCH--------------HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChH
Confidence 7999999998832 346677777764 45678899999999999999999 98 78999999999
Q ss_pred HHHHHHHHHHccCCCCCc-CCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 128 QKRLVFSTITAKMNLSDE-VDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 128 ~r~~il~~~~~~~~~~~~-~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
+..+.++..+...++.-+ ..+..++..+.| +..+..+++..+..
T Consensus 187 ei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 187 HIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 999888887766554322 124556666444 55666666666554
No 98
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.25 E-value=3.4e-06 Score=83.28 Aligned_cols=156 Identities=13% Similarity=0.204 Sum_probs=95.6
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhhhhhhcCch-HHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEG-PRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l~~~~~ges-e~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|.|++++|+++ +..++.++++++...+...- ...+.. |...-...|.+|+|||++.+.++. ...
T Consensus 144 THLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~---------~~q 213 (440)
T PRK14088 144 THLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT---------GVQ 213 (440)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH---------HHH
Confidence 46899999986 56889999988876543211 111222 222222368999999999886432 011
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEcCCCCC---CCccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCC-CcCCH
Q psy6770 75 RILLELLNQMDGFDQTTNVKVIMATNRADT---LDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDL 148 (362)
Q Consensus 75 ~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~---ld~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl 148 (362)
..+..+++.+. ..++.+++.+.+.|.. +++.+.+ ||. ..+.+..|+.+.|..|++.......+. ++.-+
T Consensus 214 ~elf~~~n~l~---~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~ 288 (440)
T PRK14088 214 TELFHTFNELH---DSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVL 288 (440)
T ss_pred HHHHHHHHHHH---HcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 12222232222 2334555555566665 4566777 874 577899999999999999988754433 22235
Q ss_pred HHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 149 EDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 149 ~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
+.++....| +.+++..++.....
T Consensus 289 ~~Ia~~~~~-~~R~L~g~l~~l~~ 311 (440)
T PRK14088 289 NFVAENVDD-NLRRLRGAIIKLLV 311 (440)
T ss_pred HHHHhcccc-CHHHHHHHHHHHHH
Confidence 666666543 66677777665543
No 99
>PRK04132 replication factor C small subunit; Provisional
Probab=98.22 E-value=1.4e-05 Score=83.82 Aligned_cols=132 Identities=18% Similarity=0.209 Sum_probs=94.8
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcC------CeEEEeccccccccccCCCCCCC
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENS------PAIIFIDEIDAIATKRFDAQTGA 69 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~------P~II~iDeiD~l~~~r~~~~~~~ 69 (362)
|++|++||+++ +.+++++++++..+ ...++.+.+.+.... .-||+|||+|.+-.
T Consensus 580 TT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~--------- 644 (846)
T PRK04132 580 TTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------- 644 (846)
T ss_pred HHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH---------
Confidence 46899999998 66899999998532 235666655544333 25999999998842
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCH
Q psy6770 70 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDL 148 (362)
Q Consensus 70 ~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl 148 (362)
..-+.|+..|+. ...++.+|.+||.+..+.+++++ |+ ..+.|+.|+.++....++..+...++. ++..+
T Consensus 645 -----~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L 714 (846)
T PRK04132 645 -----DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGL 714 (846)
T ss_pred -----HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 223444444553 34678899999999999999998 97 788999999999888888777654433 23356
Q ss_pred HHHHhcCCC
Q psy6770 149 EDYVARPDR 157 (362)
Q Consensus 149 ~~la~~t~g 157 (362)
..++..+.|
T Consensus 715 ~~Ia~~s~G 723 (846)
T PRK04132 715 QAILYIAEG 723 (846)
T ss_pred HHHHHHcCC
Confidence 667766555
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2e-05 Score=78.75 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 31 GPRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 31 se~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
+...++.+.+.+... ..-|++|||+|.+.. ..++.|+..++. ....+++|.+|+.++.++
T Consensus 109 ~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------------~a~naLLk~LEe--pp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 109 SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------------GAFNALLKTLEE--PPPHIIFIFATTEVQKIP 172 (507)
T ss_pred CHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------------HHHHHHHHHHhh--cCCCEEEEEEeCChHHhh
Confidence 356678888777543 246999999998731 335566666663 456777888888899999
Q ss_pred ccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 107 PALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 107 ~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
+++++ |+ ..+++..++.++...+++..++..+.. ++..+..++..+.| +..++.+.+..++..+
T Consensus 173 ~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 173 ATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASMS 237 (507)
T ss_pred HHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhh
Confidence 99998 88 679999999999999999988876543 22246677777665 7788888887776554
No 101
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.21 E-value=1.5e-05 Score=78.29 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=92.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|+||+++|+.++.+|+.++++.. +.+.++.+++.+.. ....||||||+|.+... .
T Consensus 50 TtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~--------------~ 108 (413)
T PRK13342 50 TTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA--------------Q 108 (413)
T ss_pred HHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH--------------H
Confidence 57999999999999999998632 23456666666642 25689999999987421 1
Q ss_pred HHHHHHhccCCCCCCCeEEEEEcC-C-CCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCC--C-C-CcCCHHH
Q psy6770 77 LLELLNQMDGFDQTTNVKVIMATN-R-ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN--L-S-DEVDLED 150 (362)
Q Consensus 77 l~~lL~~ld~l~~~~~v~vi~tTn-~-~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~--~-~-~~~dl~~ 150 (362)
...|+..++ ...+++|++|+ . ...+++++++ |+ ..+.++.|+.++...+++..+.... . . ++..+..
T Consensus 109 q~~LL~~le----~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~ 181 (413)
T PRK13342 109 QDALLPHVE----DGTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDA 181 (413)
T ss_pred HHHHHHHhh----cCcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 223333333 24566776643 3 4588999999 98 7899999999999999988775421 1 1 1123455
Q ss_pred HHhcCCCCcHhhHHHHHHHHH
Q psy6770 151 YVARPDRISGADINAICQEVI 171 (362)
Q Consensus 151 la~~t~g~s~~di~~l~~~a~ 171 (362)
++..+.| ....+.+++..+.
T Consensus 182 l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 182 LARLANG-DARRALNLLELAA 201 (413)
T ss_pred HHHhCCC-CHHHHHHHHHHHH
Confidence 6665533 3444444454443
No 102
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.8e-05 Score=78.52 Aligned_cols=145 Identities=15% Similarity=0.204 Sum_probs=96.9
Q ss_pred CcHHHHHHhhhCC------------------------cEEEEechhhhhhhcCchHHHHHHHHHHHHHc----CCeEEEe
Q psy6770 1 YLLCTSFDTELVT------------------------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN----SPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~------------------------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~----~P~II~i 52 (362)
|++|+++|+++++ .++.+++++- .+...++.+.+.+... ...||+|
T Consensus 50 TTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvII 123 (472)
T PRK14962 50 TTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYII 123 (472)
T ss_pred HHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEE
Confidence 4789999999886 4666666421 1234456666655432 3469999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHH
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~i 132 (362)
||+|.+.. ...+.|+..++. ..+.+++|++|+.+..+++++++ |+ ..++|..|+.++...+
T Consensus 124 DE~h~Lt~--------------~a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~ 184 (472)
T PRK14962 124 DEVHMLTK--------------EAFNALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKR 184 (472)
T ss_pred EChHHhHH--------------HHHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHH
Confidence 99998841 234556666664 34567777787888999999999 88 4799999999999999
Q ss_pred HHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 133 FSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 133 l~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~ 171 (362)
++..+...+.. ++..++.++..+.| ....+-+.+..+.
T Consensus 185 L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~Le~l~ 223 (472)
T PRK14962 185 LQEVAEAEGIEIDREALSFIAKRASG-GLRDALTMLEQVW 223 (472)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 98887655432 22246677776543 3334444444433
No 103
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=5.2e-06 Score=85.54 Aligned_cols=118 Identities=21% Similarity=0.283 Sum_probs=93.7
Q ss_pred hCCcEEEEechhhhh--hhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCC
Q psy6770 11 LVTAFIRVVGSEFVQ--KYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 88 (362)
Q Consensus 11 ~~~~~~~v~~s~l~~--~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~ 88 (362)
-+..+++++.+.+.. +|-|+.|++++.+.+.++...+.|+||||+|++.+.....++.. ...+++.-.|
T Consensus 225 ~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~--DAaNiLKPaL------- 295 (786)
T COG0542 225 KDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAM--DAANLLKPAL------- 295 (786)
T ss_pred cCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccccc--chhhhhHHHH-------
Confidence 467889999998874 69999999999999999999899999999999998764333212 2246666666
Q ss_pred CCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccC
Q psy6770 89 QTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 140 (362)
Q Consensus 89 ~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~ 140 (362)
..+.+-+|++|+.-+ .-|+||-| || ..|.+.-|+.++-..|++-+-..+
T Consensus 296 ARGeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 296 ARGELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred hcCCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHH
Confidence 345677999988644 45999999 99 568999999999999998665544
No 104
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=1.6e-05 Score=81.68 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=99.6
Q ss_pred CcHHHHHHhhhCC------------------------cEEEEechhhhhhhcCchHHHHHHHHHHHHH----cCCeEEEe
Q psy6770 1 YLLCTSFDTELVT------------------------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~------------------------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P~II~i 52 (362)
+.+++++|+.++| .+++++.++- .+...++.+.+.+.. ....|++|
T Consensus 52 TTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIII 125 (830)
T PRK07003 52 TTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMI 125 (830)
T ss_pred HHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEE
Confidence 3578888888876 3555554321 223446666665542 23469999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHH
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~i 132 (362)
||+|.+.. ...+.||..|+. ...++.+|.+||.++.|.+.+++ |+ ..+.|..++.++..+.
T Consensus 126 DEah~LT~--------------~A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~ 186 (830)
T PRK07003 126 DEVHMLTN--------------HAFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSH 186 (830)
T ss_pred eChhhCCH--------------HHHHHHHHHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHH
Confidence 99998832 235556665553 34578899999999999999999 98 7899999999999999
Q ss_pred HHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 133 FSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 133 l~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
++..++..++. ++..+..+++...|- ..+..+++..+..
T Consensus 187 L~~Il~~EgI~id~eAL~lIA~~A~Gs-mRdALsLLdQAia 226 (830)
T PRK07003 187 LERILGEERIAFEPQALRLLARAAQGS-MRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 98888765543 223466677776664 4555555555553
No 105
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.17 E-value=3.1e-05 Score=74.61 Aligned_cols=124 Identities=23% Similarity=0.295 Sum_probs=83.2
Q ss_pred CcHHHHHHhhhC---------CcEEEEechhhh----------hhhc--C--------chHHHHHHHHHHHHH-cCCeEE
Q psy6770 1 YLLCTSFDTELV---------TAFIRVVGSEFV----------QKYL--G--------EGPRMVRDVFRLAKE-NSPAII 50 (362)
Q Consensus 1 slLakaiA~e~~---------~~~~~v~~s~l~----------~~~~--g--------ese~~l~~~F~~a~~-~~P~II 50 (362)
|.+++++++++. +.++.+++.... .... | ...+.++.+++.... ..|.||
T Consensus 54 T~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl 133 (365)
T TIGR02928 54 TAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLII 133 (365)
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 467888887653 678888875422 1111 1 123445666666653 457899
Q ss_pred EeccccccccccCCCCCCCcHHHHHHHHHHHHh--ccCCCCCCCeEEEEEcCCCC---CCCccccCCCcce-eEEEccCC
Q psy6770 51 FIDEIDAIATKRFDAQTGADREVQRILLELLNQ--MDGFDQTTNVKVIMATNRAD---TLDPALLRPGRLD-RKIEFPLP 124 (362)
Q Consensus 51 ~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~--ld~l~~~~~v~vi~tTn~~~---~ld~al~r~gRf~-~~i~i~~P 124 (362)
+|||+|.+.... + ..+..++.. .... .+.++.+|+++|.++ .+++.+.+ ||. ..++|+++
T Consensus 134 vIDE~d~L~~~~-------~----~~L~~l~~~~~~~~~-~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~ 199 (365)
T TIGR02928 134 VLDEIDYLVGDD-------D----DLLYQLSRARSNGDL-DNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPY 199 (365)
T ss_pred EECchhhhccCC-------c----HHHHhHhccccccCC-CCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCC
Confidence 999999997221 1 234444433 1221 346789999999886 57888877 775 67999999
Q ss_pred CHHHHHHHHHHHHc
Q psy6770 125 DRRQKRLVFSTITA 138 (362)
Q Consensus 125 ~~~~r~~il~~~~~ 138 (362)
+.++..+|++..+.
T Consensus 200 ~~~e~~~il~~r~~ 213 (365)
T TIGR02928 200 DAEELRDILENRAE 213 (365)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998876
No 106
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.17 E-value=4.1e-06 Score=80.72 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=58.7
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCC--------CCCCCeEEEEEc----CCCCCCCccccCCCcc
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGF--------DQTTNVKVIMAT----NRADTLDPALLRPGRL 115 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l--------~~~~~v~vi~tT----n~~~~ld~al~r~gRf 115 (362)
.||||||||.|+.+.++. +.+.....+=..||..++|- -...++++|++. ..|.++=|.|.. ||
T Consensus 251 GIVfiDEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~ 326 (443)
T PRK05201 251 GIVFIDEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RF 326 (443)
T ss_pred CEEEEEcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--cc
Confidence 599999999999775332 22222234455666666652 124578888753 457778888887 99
Q ss_pred eeEEEccCCCHHHHHHHH
Q psy6770 116 DRKIEFPLPDRRQKRLVF 133 (362)
Q Consensus 116 ~~~i~i~~P~~~~r~~il 133 (362)
..++++..++.+.-.+||
T Consensus 327 Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 327 PIRVELDALTEEDFVRIL 344 (443)
T ss_pred ceEEECCCCCHHHHHHHh
Confidence 999999999999988888
No 107
>PRK06893 DNA replication initiation factor; Validated
Probab=98.16 E-value=9.3e-06 Score=73.20 Aligned_cols=147 Identities=14% Similarity=0.122 Sum_probs=84.6
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|.|++|+|+++ +.....++.+.... ....+++..+ +..+|+|||++.+.++. .....+
T Consensus 53 ThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~~--~~dlLilDDi~~~~~~~---------~~~~~l 113 (229)
T PRK06893 53 SHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENLE--QQDLVCLDDLQAVIGNE---------EWELAI 113 (229)
T ss_pred HHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhcc--cCCEEEEeChhhhcCCh---------HHHHHH
Confidence 46899999886 23333344332111 1112333332 45899999999886432 112334
Q ss_pred HHHHHhccCCCCCCCeEEEEEcCCCCCCC---ccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHh
Q psy6770 78 LELLNQMDGFDQTTNVKVIMATNRADTLD---PALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVA 153 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v~vi~tTn~~~~ld---~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~ 153 (362)
..+++.+.. .+..++++.++..|..++ +.+.+..++...+.++.|+.++|.++++.......+. ++.-+..++.
T Consensus 114 ~~l~n~~~~--~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~ 191 (229)
T PRK06893 114 FDLFNRIKE--QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLK 191 (229)
T ss_pred HHHHHHHHH--cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444443321 223345556666677665 7888822234788999999999999999887655443 2223455666
Q ss_pred cCCCCcHhhHHHHHHH
Q psy6770 154 RPDRISGADINAICQE 169 (362)
Q Consensus 154 ~t~g~s~~di~~l~~~ 169 (362)
+.. =+.+.+..++..
T Consensus 192 ~~~-~d~r~l~~~l~~ 206 (229)
T PRK06893 192 RLD-RDMHTLFDALDL 206 (229)
T ss_pred hcc-CCHHHHHHHHHH
Confidence 544 344555555544
No 108
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=2.3e-05 Score=77.19 Aligned_cols=146 Identities=15% Similarity=0.191 Sum_probs=99.1
Q ss_pred CcHHHHHHhhhCCc------------------------EEEEechhhhhhhcCchHHHHHHHHHHHHH----cCCeEEEe
Q psy6770 1 YLLCTSFDTELVTA------------------------FIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~~------------------------~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P~II~i 52 (362)
+.+|+.+|+.+++. ++++++.+ ..+...++.+.+.+.. ....|++|
T Consensus 54 TTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~II 127 (484)
T PRK14956 54 TTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYII 127 (484)
T ss_pred HHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEE
Confidence 46889999988873 45554422 1123445555554432 23569999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHH
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~i 132 (362)
||+|.+. ....+.||..|+. ....+++|.+|+.++.|.+++++ |+ ..+.|..++.++....
T Consensus 128 DEah~Ls--------------~~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~ 188 (484)
T PRK14956 128 DEVHMLT--------------DQSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDY 188 (484)
T ss_pred echhhcC--------------HHHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHH
Confidence 9999884 2346667777664 45688888999999999999999 98 5688988888888888
Q ss_pred HHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 133 FSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 133 l~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
++..+...++. ++..+..++....| +.++.-+++..++.
T Consensus 189 L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~i~ 228 (484)
T PRK14956 189 SEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHHHH
Confidence 88887765543 23346667766665 35555556655543
No 109
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.14 E-value=1.4e-05 Score=75.48 Aligned_cols=117 Identities=17% Similarity=0.260 Sum_probs=78.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHH-cCCeEEEeccccccccccCCCCCCCcHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE-NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~-~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~ 79 (362)
|.+|+++|++.+.+++.+++++ .. .......+......... ..+.+|+|||+|.+..+ .....+..
T Consensus 57 T~la~~l~~~~~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~ 123 (316)
T PHA02544 57 TTVAKALCNEVGAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRS 123 (316)
T ss_pred HHHHHHHHHHhCccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHH
Confidence 4689999999999999999986 21 11111222222111111 24789999999977211 12234444
Q ss_pred HHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHc
Q psy6770 80 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA 138 (362)
Q Consensus 80 lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~ 138 (362)
++.. ..+++.+|.+||.+..+++++++ ||. .+.++.|+.+++..+++..+.
T Consensus 124 ~le~-----~~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 124 FMEA-----YSKNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred HHHh-----cCCCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHH
Confidence 4433 23467788899999999999999 994 789999999999888776443
No 110
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=2.2e-05 Score=76.26 Aligned_cols=113 Identities=13% Similarity=0.184 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+++.+... ...|++|||+|.+.. ...+.||..|+. ..+++++|.+|+.++.+.|
T Consensus 99 i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEe--p~~~~~fIL~a~~~~~llp 162 (394)
T PRK07940 99 VDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEE--PPPRTVWLLCAPSPEDVLP 162 (394)
T ss_pred HHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhc--CCCCCeEEEEECChHHChH
Confidence 45578888877642 246999999999842 223556666664 3445666666666999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAIC 167 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~ 167 (362)
++++ |+ ..+.|+.|+.++..+.+.... +.. ......++..+.|..+..+.-+.
T Consensus 163 TIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 163 TIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred HHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999 98 689999999998877775322 222 22345677777887766654443
No 111
>KOG2004|consensus
Probab=98.13 E-value=7.3e-06 Score=82.40 Aligned_cols=127 Identities=26% Similarity=0.382 Sum_probs=93.1
Q ss_pred CcHHHHHHhhhCCcEEEEechhhh---------hhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFV---------QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADR 71 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~---------~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~ 71 (362)
+.++|+||..+|..|+.++...+. ..|+|.-.-++-+.++..+...| +++|||||.+... ...++
T Consensus 452 TSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g-----~qGDP 525 (906)
T KOG2004|consen 452 TSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG-----HQGDP 525 (906)
T ss_pred ccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC-----CCCCh
Confidence 468999999999999999986543 24777766666677777777764 7789999999721 11222
Q ss_pred HHHHHHHHHHHhc--cCC--------CCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHc
Q psy6770 72 EVQRILLELLNQM--DGF--------DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA 138 (362)
Q Consensus 72 ~~~~~l~~lL~~l--d~l--------~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~ 138 (362)
...+.++|+-= ..| -.-++|++|+|.|..+.|++.|+. |+ .+|+++-...+|...|.+.|+-
T Consensus 526 --asALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 526 --ASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred --HHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 23344444211 011 112579999999999999999999 98 5689999999999999988774
No 112
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.12 E-value=1.6e-05 Score=71.26 Aligned_cols=147 Identities=17% Similarity=0.177 Sum_probs=92.3
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|.||+++++++ +.+++.++++.+.... ..++.... .+.+|+|||+|.+.... .....+
T Consensus 52 T~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---------~~~~~L 112 (226)
T TIGR03420 52 SHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---------EWQEAL 112 (226)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---------HHHHHH
Confidence 56889998876 4788999998886432 23333332 34699999999874321 112334
Q ss_pred HHHHHhccCCCCCCCeEEEEEcCCCCCCC---ccccCCCcc--eeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHH
Q psy6770 78 LELLNQMDGFDQTTNVKVIMATNRADTLD---PALLRPGRL--DRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDY 151 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v~vi~tTn~~~~ld---~al~r~gRf--~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~l 151 (362)
..+++.+.. .+..+++.++..+..++ +.+.+ |+ ...+.++.|+.+++..+++.......+. ++.-+..+
T Consensus 113 ~~~l~~~~~---~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L 187 (226)
T TIGR03420 113 FHLYNRVRE---AGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYL 187 (226)
T ss_pred HHHHHHHHH---cCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 444443322 22344444444454433 66776 76 4789999999999999999877654433 22235556
Q ss_pred HhcCCCCcHhhHHHHHHHHHH
Q psy6770 152 VARPDRISGADINAICQEVIM 172 (362)
Q Consensus 152 a~~t~g~s~~di~~l~~~a~~ 172 (362)
+.. -+-+..++.++++++..
T Consensus 188 ~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 188 LRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred HHh-ccCCHHHHHHHHHHHHH
Confidence 663 56678888888877654
No 113
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=4.3e-05 Score=73.70 Aligned_cols=146 Identities=15% Similarity=0.205 Sum_probs=97.2
Q ss_pred CcHHHHHHhhhCCc------------------------EEEEechhhhhhhcCchHHHHHHHHHHHHHc----CCeEEEe
Q psy6770 1 YLLCTSFDTELVTA------------------------FIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN----SPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~~------------------------~~~v~~s~l~~~~~gese~~l~~~F~~a~~~----~P~II~i 52 (362)
|.+|+++|+++++. ++.+++++ ..+...++.+.+.+... ...|++|
T Consensus 52 Ttla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviII 125 (363)
T PRK14961 52 TTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLI 125 (363)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEE
Confidence 46889999988753 34343321 12234466666655422 2359999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHH
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~i 132 (362)
||+|.+-. ...+.+|..++. ....+.+|.+|+.++.+.+.+++ |+ ..+++++|+.++...+
T Consensus 126 DEa~~l~~--------------~a~naLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~ 186 (363)
T PRK14961 126 DEVHMLSR--------------HSFNALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNF 186 (363)
T ss_pred EChhhcCH--------------HHHHHHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHH
Confidence 99998731 234556666654 34566777778888999999988 88 6789999999999999
Q ss_pred HHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 133 FSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 133 l~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
++..++..+.. ++..+..++..+.| +++++.+.+..+..
T Consensus 187 L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~~ 226 (363)
T PRK14961 187 LKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAIN 226 (363)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 98887765532 22345566766655 66677777766554
No 114
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.10 E-value=5.9e-05 Score=73.48 Aligned_cols=163 Identities=14% Similarity=0.158 Sum_probs=98.2
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhh----------hhhhcC--------chHHHHHHHHHHHHHc-CCeEEEecccc
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEF----------VQKYLG--------EGPRMVRDVFRLAKEN-SPAIIFIDEID 56 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l----------~~~~~g--------ese~~l~~~F~~a~~~-~P~II~iDeiD 56 (362)
|++++.+++++ ++.++.+++... .....+ .....+..+++..... .+.||+|||+|
T Consensus 69 T~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d 148 (394)
T PRK00411 69 TTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDIN 148 (394)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHh
Confidence 46788888776 688999988532 222212 1233445555555443 46899999999
Q ss_pred ccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC---CCCccccCCCcce-eEEEccCCCHHHHHHH
Q psy6770 57 AIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD---TLDPALLRPGRLD-RKIEFPLPDRRQKRLV 132 (362)
Q Consensus 57 ~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~---~ld~al~r~gRf~-~~i~i~~P~~~~r~~i 132 (362)
.+.... . ...+..++..++... ..++.+|+++|.++ .+++.+.+ ||. ..|.+++++.++...+
T Consensus 149 ~l~~~~------~----~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~i 215 (394)
T PRK00411 149 YLFEKE------G----NDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDI 215 (394)
T ss_pred HhhccC------C----chHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHH
Confidence 997211 1 134555555555432 33788888888764 46676666 664 6789999999999999
Q ss_pred HHHHHccCC---CCCcCCHHHHHhcCCCCc--HhhHHHHHHHHHHhhcc
Q psy6770 133 FSTITAKMN---LSDEVDLEDYVARPDRIS--GADINAICQEVIMATNR 176 (362)
Q Consensus 133 l~~~~~~~~---~~~~~dl~~la~~t~g~s--~~di~~l~~~a~~~~~r 176 (362)
++..+...- .-++..++.+++.+.+.+ ...+-.+|..|...+..
T Consensus 216 l~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 216 LKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred HHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 998875321 112223455555553322 23334666666655543
No 115
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.10 E-value=2.7e-05 Score=80.77 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHH--cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCC---CCCC
Q psy6770 31 GPRMVRDVFRLAKE--NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR---ADTL 105 (362)
Q Consensus 31 se~~l~~~F~~a~~--~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~---~~~l 105 (362)
+...+..+|..... ...+||+|||||.|..+. ..++-.|+.... ....++++|+++|. +..+
T Consensus 852 S~evLerLF~~L~k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperL 918 (1164)
T PTZ00112 852 SFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPT--KINSKLVLIAISNTMDLPERL 918 (1164)
T ss_pred HHHHHHHHHhhhhcccccceEEEeehHhhhCccH-----------HHHHHHHHHHhh--ccCCeEEEEEecCchhcchhh
Confidence 44667788877632 335799999999997532 234555554433 24567999999986 5677
Q ss_pred CccccCCCccee-EEEccCCCHHHHHHHHHHHHccCC-CCCcCCHHHHHhcCCCCcHhhHHHHHH
Q psy6770 106 DPALLRPGRLDR-KIEFPLPDRRQKRLVFSTITAKMN-LSDEVDLEDYVARPDRISGADINAICQ 168 (362)
Q Consensus 106 d~al~r~gRf~~-~i~i~~P~~~~r~~il~~~~~~~~-~~~~~dl~~la~~t~g~s~~di~~l~~ 168 (362)
++.++. ||.. +|.|++++.++..+|++..+.... +-++.-+..+|+. ..-..+|++.++.
T Consensus 919 dPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArk-VAq~SGDARKALD 980 (1164)
T PTZ00112 919 IPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARK-VANVSGDIRKALQ 980 (1164)
T ss_pred hhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-hhhcCCHHHHHHH
Confidence 888887 7764 488899999999999998887542 1122223444443 2344567766554
No 116
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.09 E-value=2.7e-05 Score=71.67 Aligned_cols=122 Identities=21% Similarity=0.283 Sum_probs=79.7
Q ss_pred CcHHHHHHhhhCCcEEEEech------hhhhhhcCchHHH-HHH-------------------HHHHHHHcCCeEEEecc
Q psy6770 1 YLLCTSFDTELVTAFIRVVGS------EFVQKYLGEGPRM-VRD-------------------VFRLAKENSPAIIFIDE 54 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s------~l~~~~~gese~~-l~~-------------------~F~~a~~~~P~II~iDe 54 (362)
|+||+++|..+|.+++.++++ ++++.|.|..... +.. .+-.|.. .+.+++|||
T Consensus 35 T~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~-~g~~lllDE 113 (262)
T TIGR02640 35 TTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVR-EGFTLVYDE 113 (262)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHH-cCCEEEEcc
Confidence 579999999999999999764 4555554322221 111 1112222 347999999
Q ss_pred ccccccccCCCCCCCcHHHHHHHHHHHHhcc----CC-------CCCCCeEEEEEcCCCC-----CCCccccCCCcceeE
Q psy6770 55 IDAIATKRFDAQTGADREVQRILLELLNQMD----GF-------DQTTNVKVIMATNRAD-----TLDPALLRPGRLDRK 118 (362)
Q Consensus 55 iD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~l-------~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~ 118 (362)
+|.+- ......+..+|.+-. +. ...++..+|+|+|... .+++++.+ || ..
T Consensus 114 i~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~ 179 (262)
T TIGR02640 114 FTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-IT 179 (262)
T ss_pred hhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EE
Confidence 99752 223444555553210 00 0123567899999752 56889999 98 67
Q ss_pred EEccCCCHHHHHHHHHHHH
Q psy6770 119 IEFPLPDRRQKRLVFSTIT 137 (362)
Q Consensus 119 i~i~~P~~~~r~~il~~~~ 137 (362)
++++.|+.++-.+|++..+
T Consensus 180 i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 180 IFMDYPDIDTETAILRAKT 198 (262)
T ss_pred EECCCCCHHHHHHHHHHhh
Confidence 9999999999999998765
No 117
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.08 E-value=1.1e-05 Score=77.92 Aligned_cols=83 Identities=28% Similarity=0.369 Sum_probs=57.7
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCC--------CCCCCeEEEEEc----CCCCCCCccccCCCc
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGF--------DQTTNVKVIMAT----NRADTLDPALLRPGR 114 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l--------~~~~~v~vi~tT----n~~~~ld~al~r~gR 114 (362)
-.||||||||.|+.+..+.+. +.....+=..||..++|- -...++++|++. ..|.++=|.|.- |
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~--DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R 323 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGA--DVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--R 323 (441)
T ss_pred CCEEEEEchhhhcccCCCCCC--CCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--c
Confidence 369999999999976532221 211123445566666652 124578888753 357777778876 9
Q ss_pred ceeEEEccCCCHHHHHHHH
Q psy6770 115 LDRKIEFPLPDRRQKRLVF 133 (362)
Q Consensus 115 f~~~i~i~~P~~~~r~~il 133 (362)
|..++++..++.+.-.+||
T Consensus 324 ~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 324 FPIRVELQALTTDDFERIL 342 (441)
T ss_pred cceEEECCCCCHHHHHHHh
Confidence 9999999999999988887
No 118
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.06 E-value=1.6e-05 Score=78.45 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=90.8
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|.|++++|+++ |..++.++..++...+...-...-...|+..- ..+.+++|||++.+.++. ........++
T Consensus 155 THLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-----~~qeelf~l~ 228 (445)
T PRK12422 155 THLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-----ATQEEFFHTF 228 (445)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-----hhHHHHHHHH
Confidence 46889999876 68899999887765433211000011233222 356899999999875432 1111222333
Q ss_pred HHHHHhccCCCCCCCeEEEEEcCCCC---CCCccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHH
Q psy6770 78 LELLNQMDGFDQTTNVKVIMATNRAD---TLDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDY 151 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v~vi~tTn~~~---~ld~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~l 151 (362)
+.+. ..++.+++.+++.|. .+++.+++ ||. ..+.++.|+.++|..|++......++. ++.-++.+
T Consensus 229 N~l~-------~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~l 299 (445)
T PRK12422 229 NSLH-------TEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFL 299 (445)
T ss_pred HHHH-------HCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3332 123344444444454 56789998 996 788999999999999999988776543 22224446
Q ss_pred HhcCCCCcHhhHHHHHHHH
Q psy6770 152 VARPDRISGADINAICQEV 170 (362)
Q Consensus 152 a~~t~g~s~~di~~l~~~a 170 (362)
+....+ ...++..++...
T Consensus 300 a~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 300 IEALSS-NVKSLLHALTLL 317 (445)
T ss_pred HHhcCC-CHHHHHHHHHHH
Confidence 655432 344455444443
No 119
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=5.1e-05 Score=77.64 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=94.4
Q ss_pred CcHHHHHHhhhCC------------------------cEEEEechhhhhhhcCchHHHHHHHHHHHHH----cCCeEEEe
Q psy6770 1 YLLCTSFDTELVT------------------------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~------------------------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P~II~i 52 (362)
+++|+++|+.++| +++++++++- .+...++.+.+.+.. ...-|++|
T Consensus 52 TTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~II 125 (647)
T PRK07994 52 TTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLI 125 (647)
T ss_pred HHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEE
Confidence 3578888888887 3455554321 123345555444432 23469999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHH
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~i 132 (362)
||+|.+.. ...+.||..|+. ....+.+|.+|+.+..|.+.+++ |+ ..+.|..++.++....
T Consensus 126 DEah~Ls~--------------~a~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~ 186 (647)
T PRK07994 126 DEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQ 186 (647)
T ss_pred echHhCCH--------------HHHHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHH
Confidence 99998742 346667766664 45678888888899999999999 97 8899999999999999
Q ss_pred HHHHHccCCCCC-cCCHHHHHhcCCCCcHhhHHHHHHHH
Q psy6770 133 FSTITAKMNLSD-EVDLEDYVARPDRISGADINAICQEV 170 (362)
Q Consensus 133 l~~~~~~~~~~~-~~dl~~la~~t~g~s~~di~~l~~~a 170 (362)
++..+...++.- +..+..++..+.| +.++..+++..+
T Consensus 187 L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldqa 224 (647)
T PRK07994 187 LEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQA 224 (647)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 988776554432 2234556655444 344444444443
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.03 E-value=6.5e-05 Score=71.46 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=91.0
Q ss_pred CcHHHHHHhhhC-----CcEEEEechhhhhhh-------------cCc-------hHHHHHHHHHHHHHc-----CCeEE
Q psy6770 1 YLLCTSFDTELV-----TAFIRVVGSEFVQKY-------------LGE-------GPRMVRDVFRLAKEN-----SPAII 50 (362)
Q Consensus 1 slLakaiA~e~~-----~~~~~v~~s~l~~~~-------------~ge-------se~~l~~~F~~a~~~-----~P~II 50 (362)
|.+|+++|+++. .+++.++++++...+ .+. ....++.+.+..... .+.+|
T Consensus 50 T~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 129 (337)
T PRK12402 50 TAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTI 129 (337)
T ss_pred HHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEE
Confidence 468899999885 357888887764321 111 122333333333332 24699
Q ss_pred EeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHH
Q psy6770 51 FIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 130 (362)
Q Consensus 51 ~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~ 130 (362)
+|||+|.+... ....+..++.. . .+...+|.+++.+..+.+.+++ |+ ..+++.+|+.++..
T Consensus 130 ilDe~~~l~~~-----------~~~~L~~~le~---~--~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~ 190 (337)
T PRK12402 130 LLDNAEALRED-----------AQQALRRIMEQ---Y--SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELV 190 (337)
T ss_pred EEeCcccCCHH-----------HHHHHHHHHHh---c--cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHH
Confidence 99999977321 12334444432 2 2234455566677778888887 76 57899999999999
Q ss_pred HHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 131 LVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 131 ~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
.+++..+...++. ++..+..++..+ ++++..++......
T Consensus 191 ~~l~~~~~~~~~~~~~~al~~l~~~~----~gdlr~l~~~l~~~ 230 (337)
T PRK12402 191 DVLESIAEAEGVDYDDDGLELIAYYA----GGDLRKAILTLQTA 230 (337)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 9999888766543 223455666554 45566655544433
No 121
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.6e-05 Score=80.29 Aligned_cols=165 Identities=22% Similarity=0.335 Sum_probs=111.0
Q ss_pred CcHHHHHHhhhCCcEEEEechhhh---------hhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFV---------QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADR 71 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~---------~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~ 71 (362)
++|+++||..+|..|+.++...+- ..|+|.-.-++-+-...|....| ++++||||.+..+- ..++
T Consensus 364 TSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~-----rGDP 437 (782)
T COG0466 364 TSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF-----RGDP 437 (782)
T ss_pred hhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC-----CCCh
Confidence 579999999999999999987553 34777766677777788888775 67789999997542 1222
Q ss_pred HHHHHHHHHHHh--ccCC--------CCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHc---
Q psy6770 72 EVQRILLELLNQ--MDGF--------DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA--- 138 (362)
Q Consensus 72 ~~~~~l~~lL~~--ld~l--------~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~--- 138 (362)
...+.+.|+- ...| -.-++|++|+|+|..+.|+..|+. |+ .+|+++-.+..|..+|.+.|+=
T Consensus 438 --aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~ 512 (782)
T COG0466 438 --ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQ 512 (782)
T ss_pred --HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHH
Confidence 1334444421 1111 012579999999999999999999 98 6789999999999999987762
Q ss_pred --cCCCCC-cC-----CHHHHH---hcCCCCc--HhhHHHHHHHHHHhhcc
Q psy6770 139 --KMNLSD-EV-----DLEDYV---ARPDRIS--GADINAICQEVIMATNR 176 (362)
Q Consensus 139 --~~~~~~-~~-----dl~~la---~~t~g~s--~~di~~l~~~a~~~~~r 176 (362)
..++.. ++ .+..+. .+-+|.= -.+|..+|+.++..-..
T Consensus 513 ~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~ 563 (782)
T COG0466 513 LKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILL 563 (782)
T ss_pred HHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 233331 11 122222 2223432 24578888888765443
No 122
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.98 E-value=2.5e-05 Score=81.61 Aligned_cols=123 Identities=22% Similarity=0.316 Sum_probs=82.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhh-----hhcCchH-----HHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCc
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQ-----KYLGEGP-----RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGAD 70 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~-----~~~gese-----~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~ 70 (362)
|+||+++|..++.+|+.++++++.. ..+|... ..-..+.+..+....+||||||||.+.+
T Consensus 502 T~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------- 571 (758)
T PRK11034 502 TEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------- 571 (758)
T ss_pred HHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH----------
Confidence 5799999999999999999987642 2333110 0011233444555569999999998742
Q ss_pred HHHHHHHHHHHHhccC--C-C------CCCCeEEEEEcCCC-------------------------CCCCccccCCCcce
Q psy6770 71 REVQRILLELLNQMDG--F-D------QTTNVKVIMATNRA-------------------------DTLDPALLRPGRLD 116 (362)
Q Consensus 71 ~~~~~~l~~lL~~ld~--l-~------~~~~v~vi~tTn~~-------------------------~~ld~al~r~gRf~ 116 (362)
.+.+.||+.|+. + . .-.++++|+|||.- ..+.|.++. |+|
T Consensus 572 ----~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid 645 (758)
T PRK11034 572 ----DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLD 645 (758)
T ss_pred ----HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCC
Confidence 234444444442 1 0 12478899999932 124577777 999
Q ss_pred eEEEccCCCHHHHHHHHHHHHcc
Q psy6770 117 RKIEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 117 ~~i~i~~P~~~~r~~il~~~~~~ 139 (362)
.+|.|++.+.++..+|+...+..
T Consensus 646 ~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 646 NIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999877653
No 123
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.97 E-value=3.8e-05 Score=72.09 Aligned_cols=124 Identities=12% Similarity=0.165 Sum_probs=86.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhh--hcCchHHHH----------HHHHHHHHHcCCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQK--YLGEGPRMV----------RDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~--~~gese~~l----------~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|.+++.+|.++|++++.|+++.-... .+|...-.+ ...+-.|. ..++++++||+|..-
T Consensus 78 Ttla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDEin~a~--------- 147 (327)
T TIGR01650 78 STHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDEYDAGR--------- 147 (327)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEechhhccC---------
Confidence 57899999999999999998765544 455321111 11233343 346999999999762
Q ss_pred CcHHHHHHHHHHHHh-----ccC----CCCCCCeEEEEEcCCCC------------CCCccccCCCcceeEEEccCCCHH
Q psy6770 69 ADREVQRILLELLNQ-----MDG----FDQTTNVKVIMATNRAD------------TLDPALLRPGRLDRKIEFPLPDRR 127 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~-----ld~----l~~~~~v~vi~tTn~~~------------~ld~al~r~gRf~~~i~i~~P~~~ 127 (362)
+.....++.+|+. +.+ +...+...||+|.|..+ .++.|.+. ||-.++.++.|+.+
T Consensus 148 --p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e 223 (327)
T TIGR01650 148 --PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHD 223 (327)
T ss_pred --HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHH
Confidence 2234556666652 111 22345688999999754 45789999 99999999999999
Q ss_pred HHHHHHHHHHc
Q psy6770 128 QKRLVFSTITA 138 (362)
Q Consensus 128 ~r~~il~~~~~ 138 (362)
+-.+|+.....
T Consensus 224 ~E~~Il~~~~~ 234 (327)
T TIGR01650 224 NEAAIVLAKAK 234 (327)
T ss_pred HHHHHHHhhcc
Confidence 99999876543
No 124
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.96 E-value=4.3e-05 Score=75.68 Aligned_cols=156 Identities=12% Similarity=0.183 Sum_probs=97.5
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhhhhhhcCchH---HHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHH
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEGP---RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADRE 72 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l~~~~~gese---~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~ 72 (362)
|.|++|+++++ +..++.+++.++...+...-. ..+..+.+.. ..+.+|+|||++.+.++. .
T Consensus 155 THLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k~---------~ 223 (450)
T PRK14087 155 THLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYKE---------K 223 (450)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCCH---------H
Confidence 46889999854 578899999998876543221 1222221222 346799999999885432 1
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEEcCC-CC---CCCccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCC---C
Q psy6770 73 VQRILLELLNQMDGFDQTTNVKVIMATNR-AD---TLDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNL---S 143 (362)
Q Consensus 73 ~~~~l~~lL~~ld~l~~~~~v~vi~tTn~-~~---~ld~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~---~ 143 (362)
....+-.+++.+. ..++- +|.|++. |. .+++.+.+ ||. ..+.+..|+.++|..+++..+...+. -
T Consensus 224 ~~e~lf~l~N~~~---~~~k~-iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l 297 (450)
T PRK14087 224 TNEIFFTIFNNFI---ENDKQ-LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEV 297 (450)
T ss_pred HHHHHHHHHHHHH---HcCCc-EEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCC
Confidence 1233444444332 22233 4555444 43 34778888 885 67788999999999999998876543 1
Q ss_pred CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 144 DEVDLEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 144 ~~~dl~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
++.-+..++....| +++.+..+|..+...+
T Consensus 298 ~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a 327 (450)
T PRK14087 298 TEEAINFISNYYSD-DVRKIKGSVSRLNFWS 327 (450)
T ss_pred CHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 22235556666554 6777888887776544
No 125
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.95 E-value=5.6e-05 Score=76.46 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 93 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 93 v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~ 171 (362)
.++.+||+.|+.+++++++ |+ ..+.++.++.+++..+++..+++.+.. ++..++.++..+ .+++++.++++.|.
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa 309 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAA 309 (531)
T ss_pred EEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHH
Confidence 4555678889999999999 98 467899889999999999998876543 222344455443 37899999999988
Q ss_pred Hhhcc
Q psy6770 172 MATNR 176 (362)
Q Consensus 172 ~~~~r 176 (362)
..+..
T Consensus 310 ~~A~~ 314 (531)
T TIGR02902 310 GIALG 314 (531)
T ss_pred HHHhh
Confidence 76644
No 126
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.95 E-value=1.1e-05 Score=65.42 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=70.1
Q ss_pred CCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhccC-CChhhhhhhhhhhhhhhhhhhhcc-CC
Q psy6770 146 VDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVFSTITAKMNFMLNI-GN 223 (362)
Q Consensus 146 ~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~-~~~~~~k~~~~~~~l~~~~~~~~~-~~ 223 (362)
++...+.....+-+...+..+.+++.... .+..+-...++...... .........++++++..|+..... .+
T Consensus 29 i~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~ 102 (132)
T PF00004_consen 29 IDGSELISSYAGDSEQKIRDFFKKAKKSA------KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSR 102 (132)
T ss_dssp EETTHHHTSSTTHHHHHHHHHHHHHHHTS------TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSS
T ss_pred ccccccccccccccccccccccccccccc------cceeeeeccchhcccccccccccccccccceeeeccccccccccc
Confidence 34445555556666677777777654432 34455444444433322 123345566788999999988876 56
Q ss_pred eEEEEecCCCCCCCccccCCCCcceeEEecC
Q psy6770 224 LQVIMATNRADTLDPALLRPGRLDRKIEFPL 254 (362)
Q Consensus 224 v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~ 254 (362)
++||++||.++.+|++++| |||+..|++++
T Consensus 103 ~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 103 VIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp EEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 9999999999999999999 99999999985
No 127
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.94 E-value=1.9e-05 Score=70.67 Aligned_cols=154 Identities=17% Similarity=0.262 Sum_probs=88.7
Q ss_pred cHHHHHHhhh-----CCcEEEEechhhhhhhcCchH-HHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHH
Q psy6770 2 LLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEGP-RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQR 75 (362)
Q Consensus 2 lLakaiA~e~-----~~~~~~v~~s~l~~~~~gese-~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~ 75 (362)
-|.+|++++. +..+++++..+|...+...-. ..+..+.+..+ ...+++||++|.+..+. ....
T Consensus 49 HLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~---------~~q~ 117 (219)
T PF00308_consen 49 HLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ---------RTQE 117 (219)
T ss_dssp HHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH---------HHHH
T ss_pred HHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch---------HHHH
Confidence 4677777663 567888888888765432110 11222222222 45899999999986432 2233
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEcCCCCCC---CccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCCCcCC-HH
Q psy6770 76 ILLELLNQMDGFDQTTNVKVIMATNRADTL---DPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLSDEVD-LE 149 (362)
Q Consensus 76 ~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l---d~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~~~~d-l~ 149 (362)
.+-.+++.+. ..++.+++.+...|..+ ++.+++ ||. ..+.+..|+.+.|..+++......++.-+.+ ++
T Consensus 118 ~lf~l~n~~~---~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~ 192 (219)
T PF00308_consen 118 ELFHLFNRLI---ESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIE 192 (219)
T ss_dssp HHHHHHHHHH---HTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHH
T ss_pred HHHHHHHHHH---hhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 4444444333 34556666666666654 677777 886 4889999999999999999998876653323 34
Q ss_pred HHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 150 DYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 150 ~la~~t~g~s~~di~~l~~~a~~ 172 (362)
.++.. ..-+..+|..++.....
T Consensus 193 ~l~~~-~~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 193 YLARR-FRRDVRELEGALNRLDA 214 (219)
T ss_dssp HHHHH-TTSSHHHHHHHHHHHHH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHH
Confidence 44544 33477777777766543
No 128
>PRK05642 DNA replication initiation factor; Validated
Probab=97.93 E-value=6.9e-05 Score=67.78 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=89.2
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|.|++|+|+++ |...+.++..++.... ..+.+..+.. .+++|||++.+.++. .....+
T Consensus 59 THLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~---------~~~~~L 119 (234)
T PRK05642 59 SHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGKA---------DWEEAL 119 (234)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCCh---------HHHHHH
Confidence 45788888653 5778888888876531 2233333322 689999999875432 112234
Q ss_pred HHHHHhccCCCCCCCeEEEEEcCCCCCC---CccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHH
Q psy6770 78 LELLNQMDGFDQTTNVKVIMATNRADTL---DPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDY 151 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v~vi~tTn~~~~l---d~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~l 151 (362)
-.+++.+ ..+++.++++++..|..+ .+.+++ ||. ..+.+..|+.+++..+++.......+. ++.-++.+
T Consensus 120 f~l~n~~---~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L 194 (234)
T PRK05642 120 FHLFNRL---RDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFI 194 (234)
T ss_pred HHHHHHH---HhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4444332 244566777776666433 688998 984 777889999999999999655544332 22234455
Q ss_pred HhcCCCCcHhhHHHHHHHHH
Q psy6770 152 VARPDRISGADINAICQEVI 171 (362)
Q Consensus 152 a~~t~g~s~~di~~l~~~a~ 171 (362)
+.+. .=+.+.+..++....
T Consensus 195 ~~~~-~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 195 LTRG-TRSMSALFDLLERLD 213 (234)
T ss_pred HHhc-CCCHHHHHHHHHHHH
Confidence 5553 345566666655443
No 129
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=8e-05 Score=75.71 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=100.4
Q ss_pred CcHHHHHHhhhCC------------------------cEEEEechhhhhhhcCchHHHHHHHHHHHHH----cCCeEEEe
Q psy6770 1 YLLCTSFDTELVT------------------------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~------------------------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P~II~i 52 (362)
+.+|+++|++++| +++.+++++- .+...++.+.+.+.. .+..|++|
T Consensus 51 TTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~II 124 (702)
T PRK14960 51 TTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLI 124 (702)
T ss_pred HHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEE
Confidence 4688999998877 5666666432 123456666555432 23469999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHH
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~i 132 (362)
||+|.+-. ...+.|+..++. ....+.+|.+|+.+..+.+.+++ |+ .+++|..++.++....
T Consensus 125 DEVh~LS~--------------~A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~ 185 (702)
T PRK14960 125 DEVHMLST--------------HSFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKH 185 (702)
T ss_pred echHhcCH--------------HHHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHH
Confidence 99998732 234556666664 34567788888889999999887 88 6899999999999999
Q ss_pred HHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 133 FSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 133 l~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
++..+.+.+.. .+..+..++..+.| +.+++.+++..+...
T Consensus 186 L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaIay 226 (702)
T PRK14960 186 LGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAIAY 226 (702)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 98888766543 22245666766554 666666666665543
No 130
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00017 Score=73.66 Aligned_cols=122 Identities=14% Similarity=0.164 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+.+.+... .--|++|||+|.+.. ...+.||..++. ....+.+|.+|+.+..+.+
T Consensus 106 Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------------~a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 106 VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------------TAFNAMLKTLEE--PPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred HHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------------HHHHHHHHhccc--CCCCeEEEEEECCchhhhH
Confidence 34566666554322 124999999998742 336667766664 3456777888888999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCC-cCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSD-EVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~-~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
.+++ |+ ..++|..++.++....++..+...++.- +..+..++..+.| +..++.+++..+...
T Consensus 170 TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 170 TVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred HHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 9888 87 7899999999999999988877665442 2235666766555 666666666555443
No 131
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.83 E-value=0.00019 Score=68.90 Aligned_cols=122 Identities=18% Similarity=0.246 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+++.+... ..-||+|||+|.+.. ...+.++..++. ....+++|.+|+.++.+.+
T Consensus 99 ~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------------~~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~ 162 (355)
T TIGR02397 99 VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------------SAFNALLKTLEE--PPEHVVFILATTEPHKIPA 162 (355)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------------HHHHHHHHHHhC--CccceeEEEEeCCHHHHHH
Confidence 44577777776543 235999999997731 235566666664 3456777788888998889
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
++++ |+ ..++++.|+..+...+++..+...+.. ++..+..++..+.| ++..+.+.+..+...
T Consensus 163 ~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 163 TILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLISF 225 (355)
T ss_pred HHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHHhh
Confidence 9998 87 578999999999999999888766543 22234556666544 666666666665554
No 132
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00034 Score=70.19 Aligned_cols=145 Identities=12% Similarity=0.173 Sum_probs=96.0
Q ss_pred CcHHHHHHhhhCC-----------------------cEEEEechhhhhhhcCchHHHHHHHHHHHHH----cCCeEEEec
Q psy6770 1 YLLCTSFDTELVT-----------------------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSPAIIFID 53 (362)
Q Consensus 1 slLakaiA~e~~~-----------------------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P~II~iD 53 (362)
|.+|+++|+.+.+ .++.+++++- .+...++.+.+.+.. ..+.||+||
T Consensus 50 TTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIID 123 (504)
T PRK14963 50 TTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILD 123 (504)
T ss_pred HHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEE
Confidence 4678888888865 2566665421 123445665444443 246799999
Q ss_pred cccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHH
Q psy6770 54 EIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 133 (362)
Q Consensus 54 eiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il 133 (362)
|+|.+. ...++.|+..++. ....+++|.+|+.+..+.+.+.+ |+. .++|..|+.++....+
T Consensus 124 Ead~ls--------------~~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L 184 (504)
T PRK14963 124 EAHMMS--------------KSAFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKL 184 (504)
T ss_pred CccccC--------------HHHHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHH
Confidence 998652 2345666766664 34567788888999999999998 874 7899999999999999
Q ss_pred HHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 134 STITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 134 ~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~ 171 (362)
+..+...++. ++..+..++..+.| ...++.+.++.+.
T Consensus 185 ~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lekl~ 222 (504)
T PRK14963 185 RRLLEAEGREAEPEALQLVARLADG-AMRDAESLLERLL 222 (504)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9888766553 22234556655443 4455555555544
No 133
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.82 E-value=0.0001 Score=60.24 Aligned_cols=109 Identities=35% Similarity=0.491 Sum_probs=69.6
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHH---HHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRM---VRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~---l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|.|++.+++++ +.+++.++++............. ....+.......+.+|++||++.+... ..
T Consensus 33 T~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-----------~~ 101 (151)
T cd00009 33 TTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG-----------AQ 101 (151)
T ss_pred HHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHH-----------HH
Confidence 56899999998 99999999988765543322111 122234445567899999999987211 11
Q ss_pred HHHHHHHHhccC-CCCCCCeEEEEEcCCCC--CCCccccCCCcceeEEEcc
Q psy6770 75 RILLELLNQMDG-FDQTTNVKVIMATNRAD--TLDPALLRPGRLDRKIEFP 122 (362)
Q Consensus 75 ~~l~~lL~~ld~-l~~~~~v~vi~tTn~~~--~ld~al~r~gRf~~~i~i~ 122 (362)
..+..++..+.. .....++.+|+++|... .+++.+.. ||+.+++++
T Consensus 102 ~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 102 NALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 222222222211 11246788888988877 67888887 998888776
No 134
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00015 Score=73.31 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=96.7
Q ss_pred CcHHHHHHhhhCCc------------------------EEEEechhhhhhhcCchHHHHHHHHHHHHHc----CCeEEEe
Q psy6770 1 YLLCTSFDTELVTA------------------------FIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN----SPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~~------------------------~~~v~~s~l~~~~~gese~~l~~~F~~a~~~----~P~II~i 52 (362)
+++|+++|+.+++. ++.+++++ ..+...++.+.+.+... ...|++|
T Consensus 52 Tt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvII 125 (527)
T PRK14969 52 TTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYII 125 (527)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEE
Confidence 46788999888773 34443321 12345577777666432 2359999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHH
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~i 132 (362)
||+|.+.. ...+.||..++. ....+++|.+|+.++.+.+.+++ |+ ..++|..|+.++....
T Consensus 126 DEad~ls~--------------~a~naLLK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~ 186 (527)
T PRK14969 126 DEVHMLSK--------------SAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSH 186 (527)
T ss_pred cCcccCCH--------------HHHHHHHHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHH
Confidence 99997741 335667766664 34567788888889999988887 87 7899999999999888
Q ss_pred HHHHHccCCCCCc-CCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 133 FSTITAKMNLSDE-VDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 133 l~~~~~~~~~~~~-~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
+...++..++.-+ ..+..++..+ +-+..++.+++..+...
T Consensus 187 L~~il~~egi~~~~~al~~la~~s-~Gslr~al~lldqai~~ 227 (527)
T PRK14969 187 LQHILEQENIPFDATALQLLARAA-AGSMRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHh
Confidence 8887765554322 2344555554 34556666666655443
No 135
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00016 Score=74.07 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+++.+.. ....||+|||+|.+- ...++.||..|+. ....+.+|.+|+.+..+.+
T Consensus 101 Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALLKtLEE--Pp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 101 IDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLKTLEE--PPEHVKFILATTDPHKVPV 164 (709)
T ss_pred HHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHHHHHHh--CCCCcEEEEEeCCccccch
Confidence 4567777766532 234699999999763 1335666666664 3456778888899999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
.+++ |+ ..+.|..++.++....++..+...++. ++..+..|+..+ +=+..++.+++..++..
T Consensus 165 TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A-~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 165 TVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA-AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 9987 88 678888999999999998888876643 222356677665 45677777777776654
No 136
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00025 Score=68.49 Aligned_cols=154 Identities=14% Similarity=0.194 Sum_probs=96.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhh------hhhhcCchHHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCc
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEF------VQKYLGEGPRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGAD 70 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l------~~~~~gese~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~ 70 (362)
|.+|+++|++++++.....+..+ .+.....+...++.+++.+... .+.||+|||+|.+..
T Consensus 53 t~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------- 122 (367)
T PRK14970 53 TTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------- 122 (367)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----------
Confidence 46788888887663221111000 0111112346677777776532 357999999997742
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHH
Q psy6770 71 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLE 149 (362)
Q Consensus 71 ~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~ 149 (362)
...+.++..++. .....++|.+|+.+..+.+++.+ |+ ..++++.|+.++...++...+...+.. ++..++
T Consensus 123 ----~~~~~ll~~le~--~~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~ 193 (367)
T PRK14970 123 ----AAFNAFLKTLEE--PPAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALH 193 (367)
T ss_pred ----HHHHHHHHHHhC--CCCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 224556555554 23455666677788899999988 77 468999999999998888877766543 233466
Q ss_pred HHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 150 DYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 150 ~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
.++..+.| +.+.+.+.+.....++
T Consensus 194 ~l~~~~~g-dlr~~~~~lekl~~y~ 217 (367)
T PRK14970 194 IIAQKADG-ALRDALSIFDRVVTFC 217 (367)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhc
Confidence 66766543 6666666666655543
No 137
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00027 Score=70.26 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=97.6
Q ss_pred CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCC
Q psy6770 12 VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGF 87 (362)
Q Consensus 12 ~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l 87 (362)
..+++++++++- .+...++.+.+.+... ..-|++|||+|.+.. ..++.||..|+.
T Consensus 84 ~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------------~A~NaLLK~LEe- 142 (491)
T PRK14964 84 HPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN--------------SAFNALLKTLEE- 142 (491)
T ss_pred CCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------------HHHHHHHHHHhC-
Confidence 446677777532 2345577777666432 346999999997732 345667777764
Q ss_pred CCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHH
Q psy6770 88 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAI 166 (362)
Q Consensus 88 ~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l 166 (362)
..+.+.+|.+|+.++.+.+.+++ |+ ..++|..++.++....++..++..+.. ++..+..++..+.| +..++.+.
T Consensus 143 -Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alsl 217 (491)
T PRK14964 143 -PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFL 217 (491)
T ss_pred -CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 34567788888889999999998 88 668999999999999998888766543 23346667777654 77888888
Q ss_pred HHHHHHhhc
Q psy6770 167 CQEVIMATN 175 (362)
Q Consensus 167 ~~~a~~~~~ 175 (362)
+..+.....
T Consensus 218 Ldqli~y~~ 226 (491)
T PRK14964 218 LEQAAIYSN 226 (491)
T ss_pred HHHHHHhcC
Confidence 877776543
No 138
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00011 Score=73.74 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=100.5
Q ss_pred CcHHHHHHhhhCCc------------------------EEEEechhhhhhhcCchHHHHHHHHHHHHH----cCCeEEEe
Q psy6770 1 YLLCTSFDTELVTA------------------------FIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~~------------------------~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P~II~i 52 (362)
+.+|+++|+.+++. ++++++++- .+...++.+.+.+.. ....|++|
T Consensus 52 Tt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iI 125 (509)
T PRK14958 52 TTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLI 125 (509)
T ss_pred HHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEE
Confidence 35788999888773 667765431 223445665554432 12359999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHH
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~i 132 (362)
||+|.+.. ...+.||..|+. ....+.+|.+|+.++.+.+.+++ |+ ..++|..++.++....
T Consensus 126 DE~~~ls~--------------~a~naLLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~ 186 (509)
T PRK14958 126 DEVHMLSG--------------HSFNALLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAH 186 (509)
T ss_pred EChHhcCH--------------HHHHHHHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHH
Confidence 99998842 235666666664 34567778888889999999988 87 6788998899888888
Q ss_pred HHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 133 FSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 133 l~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
++..+...+.. .+..+..++..+.| +..++.+++..+...
T Consensus 187 l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~ia~ 227 (509)
T PRK14958 187 CQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhc
Confidence 88888766543 22235567766554 777888888776554
No 139
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00027 Score=74.19 Aligned_cols=119 Identities=16% Similarity=0.229 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCcc
Q psy6770 33 RMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 108 (362)
Q Consensus 33 ~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~a 108 (362)
..++.+.+.+.. ...-|++|||+|.+- ....+.||..|+. ....+.+|++|+.+..|.+.
T Consensus 102 DdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALLKtLEE--PP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 102 DDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALLKTLEE--PPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred HHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHHHHHhc--cCCCeEEEEECCCchhchHH
Confidence 345555544432 123699999999883 2456777777774 45567788888899999999
Q ss_pred ccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 109 LLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 109 l~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~ 171 (362)
+++ |+ .++.|..++.++....++..+...++. .+..+..++..+.| +.+++.++|..++
T Consensus 166 IlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 166 VLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 998 88 779999999999998888877654432 11235556666554 4556666665555
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.0004 Score=70.65 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=93.0
Q ss_pred CcEEEEechhhhhhhcCchHHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCC
Q psy6770 13 TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 88 (362)
Q Consensus 13 ~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~ 88 (362)
.+++.+++++ +.+...++.+.+.+... ..-|++|||+|.+.. ..++.||..++.
T Consensus 88 ~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~--------------~a~naLLKtLEe-- 145 (559)
T PRK05563 88 MDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST--------------GAFNALLKTLEE-- 145 (559)
T ss_pred CCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------HHHHHHHHHhcC--
Confidence 3566665532 23456677777776532 246999999998731 346667766664
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHH
Q psy6770 89 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAIC 167 (362)
Q Consensus 89 ~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~ 167 (362)
....+++|.+|+.++.+.+.+++ |+ ..++|..|+..+....++..++..++. ++..+..++....| +..++.+++
T Consensus 146 pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~L 221 (559)
T PRK05563 146 PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSIL 221 (559)
T ss_pred CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 34567777778889999999998 88 468999999999999998888766543 22235556666555 677777777
Q ss_pred HHHHHh
Q psy6770 168 QEVIMA 173 (362)
Q Consensus 168 ~~a~~~ 173 (362)
..+...
T Consensus 222 dq~~~~ 227 (559)
T PRK05563 222 DQAISF 227 (559)
T ss_pred HHHHHh
Confidence 666544
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.76 E-value=0.00015 Score=76.26 Aligned_cols=121 Identities=23% Similarity=0.291 Sum_probs=83.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhh------------hcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQK------------YLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~------------~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|.||++||..++.+++.++.+++.++ |+|.. .-..+.+..+....+||+|||+|.+.+
T Consensus 498 T~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~--~~~~l~~~~~~~p~~VvllDEieka~~-------- 567 (731)
T TIGR02639 498 TELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFE--QGGLLTEAVRKHPHCVLLLDEIEKAHP-------- 567 (731)
T ss_pred HHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccc--hhhHHHHHHHhCCCeEEEEechhhcCH--------
Confidence 46999999999999999998876431 23321 112234445556668999999997632
Q ss_pred CcHHHHHHHHHHHHhccCC---C------CCCCeEEEEEcCCCC-------------------------CCCccccCCCc
Q psy6770 69 ADREVQRILLELLNQMDGF---D------QTTNVKVIMATNRAD-------------------------TLDPALLRPGR 114 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~ld~l---~------~~~~v~vi~tTn~~~-------------------------~ld~al~r~gR 114 (362)
.+.+.|++.|+.- . .-.++++|+|||... ...|.++. |
T Consensus 568 ------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--R 639 (731)
T TIGR02639 568 ------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--R 639 (731)
T ss_pred ------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--c
Confidence 2344444444421 0 124688999998742 14566776 9
Q ss_pred ceeEEEccCCCHHHHHHHHHHHHcc
Q psy6770 115 LDRKIEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 115 f~~~i~i~~P~~~~r~~il~~~~~~ 139 (362)
+|.++.|.+.+.++..+|++..+..
T Consensus 640 id~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 640 LDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887764
No 142
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.76 E-value=0.00012 Score=65.66 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=85.1
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|.||++++++. |.+++.+++.++... +. ....+.+|+|||+|.+-.. ....+
T Consensus 56 T~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~~-----------~~~~L 110 (227)
T PRK08903 56 SHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDDA-----------QQIAL 110 (227)
T ss_pred HHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCch-----------HHHHH
Confidence 46888998875 678888888776432 11 1224579999999976321 12334
Q ss_pred HHHHHhccCCCCCCCeEEEEEcCCCC---CCCccccCCCcc--eeEEEccCCCHHHHHHHHHHHHccCCCCC-cCCHHHH
Q psy6770 78 LELLNQMDGFDQTTNVKVIMATNRAD---TLDPALLRPGRL--DRKIEFPLPDRRQKRLVFSTITAKMNLSD-EVDLEDY 151 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v~vi~tTn~~~---~ld~al~r~gRf--~~~i~i~~P~~~~r~~il~~~~~~~~~~~-~~dl~~l 151 (362)
..+++.+. ..+..+++.+++.+. .+.+.+.+ || ...+++++|+.+++..+++.......+.- +.-+..+
T Consensus 111 ~~~~~~~~---~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L 185 (227)
T PRK08903 111 FNLFNRVR---AHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYL 185 (227)
T ss_pred HHHHHHHH---HcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44444333 234443444544322 34566776 77 47999999999999999988776554432 2234555
Q ss_pred HhcCCCCcHhhHHHHHHHHH
Q psy6770 152 VARPDRISGADINAICQEVI 171 (362)
Q Consensus 152 a~~t~g~s~~di~~l~~~a~ 171 (362)
+.. -+=+..++..+++...
T Consensus 186 ~~~-~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 186 LTH-FRRDMPSLMALLDALD 204 (227)
T ss_pred HHh-ccCCHHHHHHHHHHHH
Confidence 553 4446666666766543
No 143
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00024 Score=75.00 Aligned_cols=107 Identities=19% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCC
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 125 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~ 125 (362)
..-|+||||+|.+.. ...+.||..|+. ....+++|++|+.++.|-+.+++ |+ ..++|..++
T Consensus 120 ~~KV~IIDEad~lt~--------------~a~NaLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~ 180 (824)
T PRK07764 120 RYKIFIIDEAHMVTP--------------QGFNALLKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVP 180 (824)
T ss_pred CceEEEEechhhcCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCC
Confidence 456999999998842 335566666664 34567777788888889999998 87 678999999
Q ss_pred HHHHHHHHHHHHccCCCCC-cCCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 126 RRQKRLVFSTITAKMNLSD-EVDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 126 ~~~r~~il~~~~~~~~~~~-~~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
.++...+++..+...++.- +..+..++....| +..++.+.+.+.+.
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEKLia 227 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQLLA 227 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 9998888888887665432 2234455655544 66666666666553
No 144
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00027 Score=71.87 Aligned_cols=92 Identities=13% Similarity=0.246 Sum_probs=66.4
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCC
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 125 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~ 125 (362)
...||+|||+|.+-. ...+.||..|+. ....+++|++|+.+..+.+.+++ |+ ..++|+.++
T Consensus 119 ~~kVIIIDEad~Lt~--------------~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs 179 (624)
T PRK14959 119 RYKVFIIDEAHMLTR--------------EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLS 179 (624)
T ss_pred CceEEEEEChHhCCH--------------HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCC
Confidence 347999999998841 335666666664 34578888889999999989888 88 478999999
Q ss_pred HHHHHHHHHHHHccCCCC-CcCCHHHHHhcCC
Q psy6770 126 RRQKRLVFSTITAKMNLS-DEVDLEDYVARPD 156 (362)
Q Consensus 126 ~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~ 156 (362)
.++...+++..+...+.. ++..+..++..+.
T Consensus 180 ~~eL~~~L~~il~~egi~id~eal~lIA~~s~ 211 (624)
T PRK14959 180 EAGLEAHLTKVLGREGVDYDPAAVRLIARRAA 211 (624)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 999998888877765532 2223555665544
No 145
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00046 Score=69.61 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=92.4
Q ss_pred CcHHHHHHhhhCC------------------------cEEEEechhhhhhhcCchHHHHHHHHHHHHH----cCCeEEEe
Q psy6770 1 YLLCTSFDTELVT------------------------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~------------------------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P~II~i 52 (362)
|++|+++|+.+++ .+++++...- .| ...++.+.+.+.. ...-|++|
T Consensus 52 TTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViII 125 (546)
T PRK14957 52 TTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLI 125 (546)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEE
Confidence 4688999988875 4555544221 11 2334555554432 23469999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHH
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~i 132 (362)
||+|.+-. ...+.||..|+. ....+.+|++|+.+..+.+.+++ |+ ..++|..++.++....
T Consensus 126 DEa~~ls~--------------~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~ 186 (546)
T PRK14957 126 DEVHMLSK--------------QSFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQ 186 (546)
T ss_pred echhhccH--------------HHHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHH
Confidence 99998731 345566666664 34567777777778999988888 88 8899999999998888
Q ss_pred HHHHHccCCCCC-cCCHHHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 133 FSTITAKMNLSD-EVDLEDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 133 l~~~~~~~~~~~-~~dl~~la~~t~g~s~~di~~l~~~a~ 171 (362)
++..+...++.- +..+..++..+ |-+.+++.+++..++
T Consensus 187 L~~il~~egi~~e~~Al~~Ia~~s-~GdlR~alnlLek~i 225 (546)
T PRK14957 187 LKIILAKENINSDEQSLEYIAYHA-KGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 888777655432 22344555554 344555555555444
No 146
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00035 Score=69.82 Aligned_cols=121 Identities=16% Similarity=0.230 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCcc
Q psy6770 33 RMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 108 (362)
Q Consensus 33 ~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~a 108 (362)
..++.+.+.+... .+.|++|||+|.+.. ...+.|+..++. ..+.+++|.+|+.++.+.++
T Consensus 102 d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------~a~naLLk~LEe--pp~~~v~Il~tt~~~kl~~t 165 (486)
T PRK14953 102 DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------EAFNALLKTLEE--PPPRTIFILCTTEYDKIPPT 165 (486)
T ss_pred HHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------------HHHHHHHHHHhc--CCCCeEEEEEECCHHHHHHH
Confidence 3455555555432 357999999997731 234556666664 33456666677778889999
Q ss_pred ccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCc-CCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 109 LLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDE-VDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 109 l~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~-~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
+.+ |+. .+.+..|+..+....++..++..++.-+ ..+..++..+. -+.+++.+++..+...
T Consensus 166 I~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~-G~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 166 ILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE-GGMRDAASLLDQASTY 227 (486)
T ss_pred HHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 988 874 7999999999999999998887665422 23455665544 3556666666666543
No 147
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.67 E-value=0.00015 Score=69.03 Aligned_cols=123 Identities=26% Similarity=0.364 Sum_probs=77.0
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhh--hcCchHHHH----HHHHHHHHH--cCC--eEEEeccccccccccCCCCCCCc
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQK--YLGEGPRMV----RDVFRLAKE--NSP--AIIFIDEIDAIATKRFDAQTGAD 70 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~--~~gese~~l----~~~F~~a~~--~~P--~II~iDeiD~l~~~r~~~~~~~~ 70 (362)
|+||+++|..+|.+|+.|+++....+ ..|...-.. ...|+.-.. ... +|+|+|||+..-
T Consensus 57 T~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~----------- 125 (329)
T COG0714 57 TLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP----------- 125 (329)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCC-----------
Confidence 57999999999999999999754432 223211111 111111110 011 499999999653
Q ss_pred HHHHHHHHHHHHhcc------C-CCCCCCeEEEEEcC-----CCCCCCccccCCCcceeEEEccCCC-HHHHHHHHHHH
Q psy6770 71 REVQRILLELLNQMD------G-FDQTTNVKVIMATN-----RADTLDPALLRPGRLDRKIEFPLPD-RRQKRLVFSTI 136 (362)
Q Consensus 71 ~~~~~~l~~lL~~ld------~-l~~~~~v~vi~tTn-----~~~~ld~al~r~gRf~~~i~i~~P~-~~~r~~il~~~ 136 (362)
+.....+.+.+++.. + +.-..+.+||+|+| ....+++|+++ ||...++++.|+ ..+...+....
T Consensus 126 p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 126 PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 333455555555422 1 22346788889989 56678999999 999999999995 44444444443
No 148
>PLN03025 replication factor C subunit; Provisional
Probab=97.67 E-value=0.00023 Score=67.49 Aligned_cols=140 Identities=15% Similarity=0.213 Sum_probs=87.2
Q ss_pred CcHHHHHHhhhC-----CcEEEEechhhhhhhcCchHHHHHHHHHH-HHH------cCCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTELV-----TAFIRVVGSEFVQKYLGEGPRMVRDVFRL-AKE------NSPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~~-----~~~~~v~~s~l~~~~~gese~~l~~~F~~-a~~------~~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|.+|+++|+++. ..+++++.++..+. ..++...+. +.. ..+.||+|||+|.+....
T Consensus 48 Ttla~~la~~l~~~~~~~~~~eln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a------ 115 (319)
T PLN03025 48 TTSILALAHELLGPNYKEAVLELNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA------ 115 (319)
T ss_pred HHHHHHHHHHHhcccCccceeeecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH------
Confidence 468999999973 34677777654321 123332221 111 235799999999885321
Q ss_pred CcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCC
Q psy6770 69 ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVD 147 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~d 147 (362)
...+...+ +. ......+|.++|.++.+.+++++ |+ ..+.|+.|+.++....++..+...++. ++..
T Consensus 116 -----q~aL~~~l---E~--~~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~ 182 (319)
T PLN03025 116 -----QQALRRTM---EI--YSNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEG 182 (319)
T ss_pred -----HHHHHHHH---hc--ccCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 23333333 32 12345566788888899999998 87 578999999999999998887765543 2224
Q ss_pred HHHHHhcCCCCcHhhHHHHHHH
Q psy6770 148 LEDYVARPDRISGADINAICQE 169 (362)
Q Consensus 148 l~~la~~t~g~s~~di~~l~~~ 169 (362)
+..++.... +|++.+++.
T Consensus 183 l~~i~~~~~----gDlR~aln~ 200 (319)
T PLN03025 183 LEAIIFTAD----GDMRQALNN 200 (319)
T ss_pred HHHHHHHcC----CCHHHHHHH
Confidence 556665543 455555443
No 149
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.67 E-value=0.00045 Score=60.14 Aligned_cols=86 Identities=15% Similarity=0.257 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+.+.+.. ...-||+|||+|.+.. ...+.||..|+. .+....+|.+|+.+..+.+
T Consensus 78 ~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 78 VDQVRELVEFLSRTPQESGRRVVIIEDAERMNE--------------AAANALLKTLEE--PPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHHHHccCcccCCeEEEEEechhhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChHhChH
Confidence 3456666666654 2357999999998742 224456666664 3445667777788899999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTI 136 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~ 136 (362)
++++ |+ ..+++++|+.++...++...
T Consensus 142 ~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 142 TIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred HHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 9998 87 58999999999988888775
No 150
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00056 Score=62.27 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=102.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
+.||+-||+|+|+.+-..++..+..+ |+ +-.++.... ...|+||||||.+.+.- ..++-
T Consensus 66 TTLA~IIA~Emgvn~k~tsGp~leK~--gD----laaiLt~Le--~~DVLFIDEIHrl~~~v-----------EE~LY-- 124 (332)
T COG2255 66 TTLAHIIANELGVNLKITSGPALEKP--GD----LAAILTNLE--EGDVLFIDEIHRLSPAV-----------EEVLY-- 124 (332)
T ss_pred HHHHHHHHHHhcCCeEecccccccCh--hh----HHHHHhcCC--cCCeEEEehhhhcChhH-----------HHHhh--
Confidence 46999999999999999999887543 22 222333322 23899999999986432 12222
Q ss_pred HHhccCC--------C--------CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-
Q psy6770 81 LNQMDGF--------D--------QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS- 143 (362)
Q Consensus 81 L~~ld~l--------~--------~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~- 143 (362)
..|+++ . .-++.-+|++|.+...+..-++. ||.....+...+.++..+|+........+.
T Consensus 125 -paMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i 201 (332)
T COG2255 125 -PAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEI 201 (332)
T ss_pred -hhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCC
Confidence 223322 0 12457899999999999999999 999999999999999999999888766654
Q ss_pred CcCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 144 DEVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 144 ~~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
++.....+|.++.| ||.-...+++.....
T Consensus 202 ~~~~a~eIA~rSRG-TPRIAnRLLrRVRDf 230 (332)
T COG2255 202 DEEAALEIARRSRG-TPRIANRLLRRVRDF 230 (332)
T ss_pred ChHHHHHHHHhccC-CcHHHHHHHHHHHHH
Confidence 22245667777666 445455555554443
No 151
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00033 Score=71.62 Aligned_cols=121 Identities=20% Similarity=0.231 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+.+.+... ..-|++|||+|.+.. ...+.||..|+. ..+.+++|.+|+.++.|.+
T Consensus 101 v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~--------------~a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 101 VDDIRELRENVKYLPSRSRYKIFIIDEVHMLST--------------NAFNALLKTLEE--PPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEChhhCCH--------------HHHHHHHHHHHc--CCCCeEEEEEeCChhhhhH
Confidence 45567776665432 124999999997742 335666666664 4567888888899999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
.+++ |+ ..++|..++..+....+...++..++. ++..+..++..+.| +..++.+++..++.
T Consensus 165 tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldqlia 226 (576)
T PRK14965 165 TILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQVLA 226 (576)
T ss_pred HHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9998 87 578999999988888888777665543 22234555555444 44555455444433
No 152
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00017 Score=66.50 Aligned_cols=86 Identities=26% Similarity=0.398 Sum_probs=61.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhh-hhcCch-HHHHHHHHHHHH----HcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLAK----ENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~-~~~ges-e~~l~~~F~~a~----~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
+|||+.+|..+++||..-+++.+.. .|+||- |..+.++.+.|. +-...||+|||||.+..+..+.+-..+-...
T Consensus 111 TlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGE 190 (408)
T COG1219 111 TLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGE 190 (408)
T ss_pred HHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCch
Confidence 5899999999999999999999986 499975 555666665552 2234899999999999887554433332223
Q ss_pred HHHHHHHHhccC
Q psy6770 75 RILLELLNQMDG 86 (362)
Q Consensus 75 ~~l~~lL~~ld~ 86 (362)
.+-..||..+.|
T Consensus 191 GVQQALLKiiEG 202 (408)
T COG1219 191 GVQQALLKIIEG 202 (408)
T ss_pred HHHHHHHHHHcC
Confidence 444556666665
No 153
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.63 E-value=0.00041 Score=72.35 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=88.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHH-----cCCeEEEeccccccccccCCCCCCCcHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE-----NSPAIIFIDEIDAIATKRFDAQTGADREVQR 75 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~-----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~ 75 (362)
|.||+++|++++.+|+.++++.. +.+.++..++.+.. ....+|||||+|.+....
T Consensus 66 TTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q------------- 125 (725)
T PRK13341 66 TTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ------------- 125 (725)
T ss_pred HHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH-------------
Confidence 46899999999999999987531 11233444444321 245799999999874211
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEcC-CC-CCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHcc-------CCCC-Cc
Q psy6770 76 ILLELLNQMDGFDQTTNVKVIMATN-RA-DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK-------MNLS-DE 145 (362)
Q Consensus 76 ~l~~lL~~ld~l~~~~~v~vi~tTn-~~-~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~-------~~~~-~~ 145 (362)
-..|+..++ ...+++|++|+ .| ..+++++++ |+ ..+.+++++.+++..+++..+.. ..+. ++
T Consensus 126 -QdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~d 197 (725)
T PRK13341 126 -QDALLPWVE----NGTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEP 197 (725)
T ss_pred -HHHHHHHhc----CceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCH
Confidence 122333333 34567776553 33 468899998 75 56899999999999999988762 1111 12
Q ss_pred CCHHHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 146 VDLEDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 146 ~dl~~la~~t~g~s~~di~~l~~~a~ 171 (362)
..++.++....| ..+++.++++.++
T Consensus 198 eaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 198 EAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 235566665432 3444445555544
No 154
>KOG2028|consensus
Probab=97.62 E-value=0.00028 Score=66.19 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=102.8
Q ss_pred CcHHHHHHhhhCCc---EEEEechhhhhhhcCchHHHHHHHHHHHHHc-----CCeEEEeccccccccccCCCCCCCcHH
Q psy6770 1 YLLCTSFDTELVTA---FIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN-----SPAIIFIDEIDAIATKRFDAQTGADRE 72 (362)
Q Consensus 1 slLakaiA~e~~~~---~~~v~~s~l~~~~~gese~~l~~~F~~a~~~-----~P~II~iDeiD~l~~~r~~~~~~~~~~ 72 (362)
+.||+.||....-+ |++++...- ..+-++.+|+.++.. +..|+|||||+.+-...
T Consensus 176 TtlArlia~tsk~~SyrfvelSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ---------- 238 (554)
T KOG2028|consen 176 TTLARLIASTSKKHSYRFVELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ---------- 238 (554)
T ss_pred HHHHHHHHhhcCCCceEEEEEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh----------
Confidence 36899999988877 777777533 246688999998753 46999999999885332
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEE-cCCCC-CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccC--------CC
Q psy6770 73 VQRILLELLNQMDGFDQTTNVKVIMA-TNRAD-TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM--------NL 142 (362)
Q Consensus 73 ~~~~l~~lL~~ld~l~~~~~v~vi~t-Tn~~~-~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~--------~~ 142 (362)
-..||-.. +++.|.+|++ |..|. .+..++++ |+ .++.+...+..+-..|+...+... ++
T Consensus 239 ----QD~fLP~V----E~G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l 307 (554)
T KOG2028|consen 239 ----QDTFLPHV----ENGDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPL 307 (554)
T ss_pred ----hhccccee----ccCceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCC
Confidence 11223222 4677888875 44454 78899998 87 556676667777777776533311 11
Q ss_pred CC------cCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhh
Q psy6770 143 SD------EVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDR 192 (362)
Q Consensus 143 ~~------~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~ 192 (362)
.+ +.-++.++..+.|=....+..+--.+.+.+.|....+...+....+.+
T Consensus 308 ~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke 363 (554)
T KOG2028|consen 308 PNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKE 363 (554)
T ss_pred CCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHH
Confidence 11 112566777777776666655544444555555444444444444433
No 155
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.61 E-value=0.0016 Score=58.46 Aligned_cols=147 Identities=18% Similarity=0.293 Sum_probs=100.3
Q ss_pred CcHHHHHHhh---hCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHc-CCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTE---LVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN-SPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e---~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~-~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|.|+||+.++ -|+.+++|...++.. +-.+++..+.. .+.|||+||+- |.. .+.. -+.
T Consensus 66 SSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe~-------~d~~-yk~ 126 (249)
T PF05673_consen 66 SSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLLRDRPYKFILFCDDLS--FEE-------GDTE-YKA 126 (249)
T ss_pred HHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHHhcCCCCEEEEecCCC--CCC-------CcHH-HHH
Confidence 6899999985 468999999888743 55667776643 47899999743 321 1222 244
Q ss_pred HHHHHHhccC-C-CCCCCeEEEEEcCCCCCCCccccC---------------------CCcceeEEEccCCCHHHHHHHH
Q psy6770 77 LLELLNQMDG-F-DQTTNVKVIMATNRADTLDPALLR---------------------PGRLDRKIEFPLPDRRQKRLVF 133 (362)
Q Consensus 77 l~~lL~~ld~-l-~~~~~v~vi~tTn~~~~ld~al~r---------------------~gRf~~~i~i~~P~~~~r~~il 133 (362)
++.+| +| + ....+|++.+|+|+-..++..+.. .-||...|.|..|+.++=.+|+
T Consensus 127 LKs~L---eGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV 203 (249)
T PF05673_consen 127 LKSVL---EGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIV 203 (249)
T ss_pred HHHHh---cCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHH
Confidence 55554 43 2 345689999999998777654332 1289999999999999999999
Q ss_pred HHHHccCCCCCc-CCH----HHHHhcCCCCcHhhHHHHHHH
Q psy6770 134 STITAKMNLSDE-VDL----EDYVARPDRISGADINAICQE 169 (362)
Q Consensus 134 ~~~~~~~~~~~~-~dl----~~la~~t~g~s~~di~~l~~~ 169 (362)
+.++...++.-+ .++ .+.+..-.|.||.-..+.+..
T Consensus 204 ~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 204 RHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999987766532 122 223344567777777776654
No 156
>PRK08727 hypothetical protein; Validated
Probab=97.59 E-value=0.0006 Score=61.60 Aligned_cols=131 Identities=18% Similarity=0.258 Sum_probs=78.7
Q ss_pred CcHHHHHHhh---hCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTE---LVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e---~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|.|++|+|++ .|...+.++..++.. .+..+++... +..+|+|||+|.+.... .....+
T Consensus 55 ThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~---------~~~~~l 115 (233)
T PRK08727 55 THLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR---------EDEVAL 115 (233)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh---------HHHHHH
Confidence 3467777554 355556666554332 2333444333 44799999999886432 112233
Q ss_pred HHHHHhccCCCCCCCeEEEEEc-CCCCCC---CccccCCCcc--eeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHH
Q psy6770 78 LELLNQMDGFDQTTNVKVIMAT-NRADTL---DPALLRPGRL--DRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLED 150 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v~vi~tT-n~~~~l---d~al~r~gRf--~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~ 150 (362)
..+++... .. +.-+|.|+ ..|..+ ++++++ || ...+.++.|+.+++..+++.......+. ++..++.
T Consensus 116 f~l~n~~~---~~-~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~ 189 (233)
T PRK08727 116 FDFHNRAR---AA-GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDW 189 (233)
T ss_pred HHHHHHHH---Hc-CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34444432 22 33344444 456655 789998 97 5678999999999999999866544332 2234666
Q ss_pred HHhcCC
Q psy6770 151 YVARPD 156 (362)
Q Consensus 151 la~~t~ 156 (362)
++..+.
T Consensus 190 La~~~~ 195 (233)
T PRK08727 190 LLTHGE 195 (233)
T ss_pred HHHhCC
Confidence 777755
No 157
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.00088 Score=69.30 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+.+.+... ...|++|||+|.+-. ...+.||..|+. +...+++|.+|+.++.+.+
T Consensus 100 vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------~A~NALLKtLEE--PP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 100 VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------SAFNALLKTLEE--PPKHVIFILATTEVHKIPL 163 (725)
T ss_pred HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------HHHHHHHHHhhc--CCCceEEEEEcCChhhhhH
Confidence 45577777766543 346999999998742 245667766664 3457788888889999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCc-CCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDE-VDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~-~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
.+++ |+ .+++|..|+.++....++..+...++.-+ ..+..++..+. -+.+++..++..+..
T Consensus 164 TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~-GslR~AlslLekl~~ 225 (725)
T PRK07133 164 TILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSS-GSLRDALSIAEQVSI 225 (725)
T ss_pred HHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 9998 88 48999999999999888887776554322 12445555543 445555565555443
No 158
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.58 E-value=0.00041 Score=65.99 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=90.9
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHH
Q psy6770 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEA 301 (362)
Q Consensus 223 ~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a 301 (362)
++.+|++||++..+++++.. ||+..+.++.|+.+++.++++......++. ++-.++.|++.+.|.- ..+..++..+
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 36889999999999999988 999999999999999999999988766543 2223778888888755 7777888887
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhCchH---HHHHHHHh-chHHHh
Q psy6770 302 GMHAVRENRYIVLPKDFEKGYKKCAGMHA---VRENRYIV-LPKDFE 344 (362)
Q Consensus 302 ~~~a~~~~~~~v~~~~~~~a~~~~~~~~~---~~~~~~~~-~~~~~~ 344 (362)
...+...+...++.+++..++........ ....+|.. +.+.|.
T Consensus 227 ~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (328)
T PRK00080 227 RDFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFG 273 (328)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcC
Confidence 77776666678999999999988755322 23444443 555543
No 159
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.56 E-value=0.00019 Score=72.59 Aligned_cols=96 Identities=22% Similarity=0.189 Sum_probs=76.4
Q ss_pred eEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHH
Q psy6770 224 LQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAG 302 (362)
Q Consensus 224 v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~ 302 (362)
.++.+|||.|+.|+|++++ |+. .|+|+.+..++...|++..+.+..+. ++-.++.++..+ ++++++.++|+.|+
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa 309 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAA 309 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHH
Confidence 3455667789999999999 985 57787778899999999999876543 222355666654 48999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHH
Q psy6770 303 MHAVRENRYIVLPKDFEKGYKK 324 (362)
Q Consensus 303 ~~a~~~~~~~v~~~~~~~a~~~ 324 (362)
..|..+++..|+.+|+..++..
T Consensus 310 ~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 310 GIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHhhCCCcEEcHHHHHHHhCC
Confidence 9998888888999999999764
No 160
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.55 E-value=0.0003 Score=63.61 Aligned_cols=145 Identities=17% Similarity=0.095 Sum_probs=82.6
Q ss_pred CcHHHHHHhhhC---CcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTELV---TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~~---~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|.|++++|+++. .....++....... ...+.+.... -.+|+|||++.+..+. .....+
T Consensus 59 ThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~---------~~~~~l 119 (235)
T PRK08084 59 SHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE---------LWEMAI 119 (235)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH---------HHHHHH
Confidence 457888887654 33444444443211 1122222222 2689999999875322 112233
Q ss_pred HHHHHhccCCCCCCCe-EEEEEcCCCCC---CCccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHH
Q psy6770 78 LELLNQMDGFDQTTNV-KVIMATNRADT---LDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLED 150 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v-~vi~tTn~~~~---ld~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~ 150 (362)
-.+++.+- ++++. +++.+++.|.. +.|.+++ |+. .++.+..|+.+++.++++......++. ++.-++.
T Consensus 120 f~l~n~~~---e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~ 194 (235)
T PRK08084 120 FDLYNRIL---ESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRF 194 (235)
T ss_pred HHHHHHHH---HcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 33333322 23333 44444555555 5789999 986 889999999999999998866554433 2223455
Q ss_pred HHhcCCCCcHhhHHHHHHHH
Q psy6770 151 YVARPDRISGADINAICQEV 170 (362)
Q Consensus 151 la~~t~g~s~~di~~l~~~a 170 (362)
++.+.. =+.+.+..++...
T Consensus 195 L~~~~~-~d~r~l~~~l~~l 213 (235)
T PRK08084 195 LLKRLD-REMRTLFMTLDQL 213 (235)
T ss_pred HHHhhc-CCHHHHHHHHHHH
Confidence 665543 3555666666553
No 161
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00089 Score=68.16 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=74.7
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCH
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 126 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~ 126 (362)
.-|++|||+|.+-. ...+.||..|+. ....+++|.+|+.++.+.+.+++ |+ .+++|..++.
T Consensus 119 ~KVvIIDEah~Lt~--------------~A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~ 179 (584)
T PRK14952 119 YRIFIVDEAHMVTT--------------AGFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPP 179 (584)
T ss_pred ceEEEEECCCcCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCH
Confidence 35999999998742 245666766664 45578888888889999999998 85 6899999999
Q ss_pred HHHHHHHHHHHccCCCCC-cCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 127 RQKRLVFSTITAKMNLSD-EVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 127 ~~r~~il~~~~~~~~~~~-~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
++....+...+...+..- +..+..++. ..|-+..++.+++..++..
T Consensus 180 ~~i~~~L~~i~~~egi~i~~~al~~Ia~-~s~GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 180 RTMRALIARICEQEGVVVDDAVYPLVIR-AGGGSPRDTLSVLDQLLAG 226 (584)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH-HcCCCHHHHHHHHHHHHhc
Confidence 998888888887665432 212333443 3445566666666665443
No 162
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.51 E-value=0.00049 Score=64.65 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=81.8
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHH
Q psy6770 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEA 301 (362)
Q Consensus 223 ~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a 301 (362)
++.+|++||++..++++++. ||...+.++.|+.++..++++......... ++-.++.+++.+.|.- ..+..+|..+
T Consensus 129 ~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred CeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 36899999999999999998 999999999999999999999988754443 2224667888888855 6778888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 302 GMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 302 ~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
...|...+...++.+++..++..+.
T Consensus 206 ~~~a~~~~~~~it~~~v~~~l~~l~ 230 (305)
T TIGR00635 206 RDFAQVRGQKIINRDIALKALEMLM 230 (305)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 7776666667799999999988753
No 163
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.00075 Score=68.45 Aligned_cols=121 Identities=16% Similarity=0.223 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+.+.+... ..-|++|||+|.+-. ...+.||..|+. +...+++|.+|+.+..+.+
T Consensus 101 Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 101 VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNALLKTLEE--PPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred HHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHHHHHHHh--CCCcEEEEEECCChHhhhH
Confidence 34466666555432 235999999998731 224556665663 3456788888888999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
++++ |+. .++|+.|+..+....++..+...+.. ++..+..++..+.| +.+++.+.+..+..
T Consensus 165 TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLekL~~ 226 (605)
T PRK05896 165 TIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQLST 226 (605)
T ss_pred HHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHh
Confidence 9998 884 78999999999998888877665432 22235556666554 55555566655433
No 164
>CHL00181 cbbX CbbX; Provisional
Probab=97.48 E-value=0.00053 Score=63.93 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=74.4
Q ss_pred hhhhhhhhhhhhhhhccCCeEEEEecCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCC--CCCC
Q psy6770 205 RLVFSTITAKMNFMLNIGNLQVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL--SDEV 277 (362)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~-----~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~--~~~~ 277 (362)
..+...++..|+.. .++++||+|++... .++|++.+ ||+.+|+|+.++.+++.+|++.++.+... .++
T Consensus 145 ~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~- 219 (287)
T CHL00181 145 SEAIEILLQVMENQ--RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE- 219 (287)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh-
Confidence 45677788878754 35688888876422 34699999 99999999999999999999999976543 222
Q ss_pred CHHHHhh----C--CCCCC-HHHHHHHHHHHHHHHHH----hcCCCCCHHHH
Q psy6770 278 DLEDYVA----R--PDRIS-GADINAICQEAGMHAVR----ENRYIVLPKDF 318 (362)
Q Consensus 278 ~~~~la~----~--~~g~s-gadi~~~~~~a~~~a~~----~~~~~v~~~~~ 318 (362)
....+.. . .+.|. |.++++++.+|...... .+...++.+|+
T Consensus 220 ~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 220 AEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 1222222 2 35666 89999999988555433 23334455544
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.48 E-value=0.00067 Score=54.67 Aligned_cols=114 Identities=27% Similarity=0.381 Sum_probs=74.1
Q ss_pred CcHHHHHHhhhCCc---EEEEechhhhhh--------------hcCchHHHHHHHHHHHHHcCCeEEEeccccccccccC
Q psy6770 1 YLLCTSFDTELVTA---FIRVVGSEFVQK--------------YLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRF 63 (362)
Q Consensus 1 slLakaiA~e~~~~---~~~v~~s~l~~~--------------~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~ 63 (362)
|.+++++|..++.. ++.++++..... ..+.....++.++..++...|.+|+|||++.+.....
T Consensus 16 Ttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~ 95 (148)
T smart00382 16 TTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQ 95 (148)
T ss_pred HHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 57899999999986 888888765432 2245677788999999998899999999999865431
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCC-CCCCCccccCCCcceeEEEccCC
Q psy6770 64 DAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR-ADTLDPALLRPGRLDRKIEFPLP 124 (362)
Q Consensus 64 ~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~-~~~ld~al~r~gRf~~~i~i~~P 124 (362)
. ...................+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 96 ~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 96 E--------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred H--------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 0 00000000000000113456778888886 4445555665 88888888665
No 166
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.46 E-value=0.001 Score=70.95 Aligned_cols=155 Identities=18% Similarity=0.308 Sum_probs=93.3
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhh------------hcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCC
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQK------------YLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDA 65 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~------------~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~ 65 (362)
|.||++||..+ +..++.++.+.+..+ |+|..+. ..+.+..+.+.++||+|||||..-
T Consensus 610 T~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~------ 681 (852)
T TIGR03345 610 TETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH------ 681 (852)
T ss_pred HHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC------
Confidence 46899999998 468899998876432 4443211 113345556677999999999543
Q ss_pred CCCCcHHHHHHHHHHHHhccCC-C------CCCCeEEEEEcCCCC-----------------------------CCCccc
Q psy6770 66 QTGADREVQRILLELLNQMDGF-D------QTTNVKVIMATNRAD-----------------------------TLDPAL 109 (362)
Q Consensus 66 ~~~~~~~~~~~l~~lL~~ld~l-~------~~~~v~vi~tTn~~~-----------------------------~ld~al 109 (362)
+.....+.++++.-. + + .-.+.++|.|||... ...|++
T Consensus 682 -----~~v~~~Llq~ld~g~-l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf 755 (852)
T TIGR03345 682 -----PDVLELFYQVFDKGV-MEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAF 755 (852)
T ss_pred -----HHHHHHHHHHhhcce-eecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHH
Confidence 222334444443210 0 0 114688999998622 134666
Q ss_pred cCCCcceeEEEccCCCHHHHHHHHHHHHccC--------CCC---CcCCHHHHHhcCC--CCcHhhHHHHHHHHHH
Q psy6770 110 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKM--------NLS---DEVDLEDYVARPD--RISGADINAICQEVIM 172 (362)
Q Consensus 110 ~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~--------~~~---~~~dl~~la~~t~--g~s~~di~~l~~~a~~ 172 (362)
+. |++ +|.|.+.+.++...|+...+... ++. ++.-++.++.... .+-...+.++++.-+.
T Consensus 756 ln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~ 828 (852)
T TIGR03345 756 LG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred hc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 76 887 78899999999999987766542 111 1112445555532 2456666666665443
No 167
>PHA02244 ATPase-like protein
Probab=97.46 E-value=0.0014 Score=62.65 Aligned_cols=110 Identities=22% Similarity=0.298 Sum_probs=68.2
Q ss_pred CcHHHHHHhhhCCcEEEEechh----hhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSE----FVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~----l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|.||+++|..+|.+|+.++... +.+ +.+........-|-.|.. ...+++|||++.+-+. ....
T Consensus 133 TtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~-----------vq~~ 199 (383)
T PHA02244 133 NHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPE-----------ALII 199 (383)
T ss_pred HHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCCHH-----------HHHH
Confidence 4799999999999999998531 111 111111111112223333 4589999999976432 2344
Q ss_pred HHHHHHh-----ccC-CCCCCCeEEEEEcCCC-----------CCCCccccCCCcceeEEEccCCCH
Q psy6770 77 LLELLNQ-----MDG-FDQTTNVKVIMATNRA-----------DTLDPALLRPGRLDRKIEFPLPDR 126 (362)
Q Consensus 77 l~~lL~~-----ld~-l~~~~~v~vi~tTn~~-----------~~ld~al~r~gRf~~~i~i~~P~~ 126 (362)
++.++.. .++ .....+.-+|+|+|.+ ..+++|++. ||- .|+++.|+.
T Consensus 200 L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 200 INSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred HHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 5555431 111 1224578899999973 577999999 995 699999984
No 168
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.002 Score=66.33 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 30 EGPRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 30 ese~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+...++.+.+.+... ..-||+|||+|.+-. ...+.||..|+. ....+++|++|+.+..+
T Consensus 101 ~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~--------------~a~naLLK~LEe--Pp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 101 TGVDNIRELIERAQFAPVQARWKVYVIDECHMLST--------------AAFNALLKTLEE--PPPRVVFVLATTDPQRV 164 (620)
T ss_pred CCHHHHHHHHHHHhhChhcCCceEEEEECccccCH--------------HHHHHHHHHHhc--CCcCeEEEEEeCChhhh
Confidence 4456788888776532 236999999998731 345666766664 34567778888889999
Q ss_pred CccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHH
Q psy6770 106 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQ 168 (362)
Q Consensus 106 d~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~ 168 (362)
-+.+++ |+ ..++|..++.++-...+.....+.+.. ....+..++..+.|- ..++.++++
T Consensus 165 lpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~-lr~A~~lLe 224 (620)
T PRK14948 165 LPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG-LRDAESLLD 224 (620)
T ss_pred hHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHH
Confidence 999998 87 668898888887777776666554332 112355556555542 244444443
No 169
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0014 Score=66.70 Aligned_cols=121 Identities=15% Similarity=0.203 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCcc
Q psy6770 33 RMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 108 (362)
Q Consensus 33 ~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~a 108 (362)
..++.+.+.+.. ...-|++|||+|.+- ....+.||..++. ....+++|.+|+.++.+.++
T Consensus 102 ddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 102 QDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLKTIEE--PPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred HHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHHhhcc--CCCCEEEEEecCChHHhHHH
Confidence 445555544432 235699999999873 1345667776664 45677888888889999999
Q ss_pred ccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 109 LLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 109 l~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
+++ |+. .++|..|+.++....++..+...+.. ++..+..++....| +..++.+++..++..
T Consensus 166 I~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdklis~ 227 (563)
T PRK06647 166 IKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVVSF 227 (563)
T ss_pred HHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhh
Confidence 998 885 68999999999998888877655543 22245556666554 677777777665544
No 170
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.0024 Score=63.40 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=73.9
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCC
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 125 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~ 125 (362)
...||+|||+|.+.. ...+.|+..|+. ..+.+++|.+|+.+..+.+++++ |+ ..++|..++
T Consensus 121 ~~kvvIIdead~lt~--------------~~~n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~ 181 (451)
T PRK06305 121 RYKIYIIDEVHMLTK--------------EAFNSLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIP 181 (451)
T ss_pred CCEEEEEecHHhhCH--------------HHHHHHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCC
Confidence 468999999998742 234566666664 34577777888889999999998 88 468999999
Q ss_pred HHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 126 RRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 126 ~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~ 171 (362)
.++....+...++..+.. ++..+..++..+.| +...+.+.+....
T Consensus 182 ~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lekl~ 227 (451)
T PRK06305 182 EETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDYVV 227 (451)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999888888877665533 22245666666543 4555555555443
No 171
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.38 E-value=0.0033 Score=59.23 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=84.8
Q ss_pred CcHHHHHHhhhC-----CcEEEEechhhhhhhcCchHHHHHHHH-HHHHH-----cCCeEEEeccccccccccCCCCCCC
Q psy6770 1 YLLCTSFDTELV-----TAFIRVVGSEFVQKYLGEGPRMVRDVF-RLAKE-----NSPAIIFIDEIDAIATKRFDAQTGA 69 (362)
Q Consensus 1 slLakaiA~e~~-----~~~~~v~~s~l~~~~~gese~~l~~~F-~~a~~-----~~P~II~iDeiD~l~~~r~~~~~~~ 69 (362)
|.+++++++++. ..++.+++++-.+ ...++..+ +.+.. ..+.+|+|||+|.+...
T Consensus 52 t~~~~~l~~~l~~~~~~~~~i~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------- 117 (319)
T PRK00440 52 TTAALALARELYGEDWRENFLELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------- 117 (319)
T ss_pred HHHHHHHHHHHcCCccccceEEeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH--------
Confidence 467888988873 3456665543211 11222222 22222 22569999999987421
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCH
Q psy6770 70 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDL 148 (362)
Q Consensus 70 ~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl 148 (362)
....++..++.. ..+..+|.++|.+..+.+++.+ |+. .++++.|+.++...+++..+...+.. ++..+
T Consensus 118 ------~~~~L~~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al 186 (319)
T PRK00440 118 ------AQQALRRTMEMY--SQNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDAL 186 (319)
T ss_pred ------HHHHHHHHHhcC--CCCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 122333334432 2345566677888888888888 875 58999999999999999888766543 22346
Q ss_pred HHHHhcCCCCcHhhHHHHHHHH
Q psy6770 149 EDYVARPDRISGADINAICQEV 170 (362)
Q Consensus 149 ~~la~~t~g~s~~di~~l~~~a 170 (362)
..++..+.| ....+.+.++.+
T Consensus 187 ~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 187 EAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred HHHHHHcCC-CHHHHHHHHHHH
Confidence 667666443 333344444433
No 172
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.0033 Score=63.29 Aligned_cols=121 Identities=22% Similarity=0.291 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCC-----eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 33 RMVRDVFRLAKENSP-----AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 33 ~~l~~~F~~a~~~~P-----~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
..++.+.+.+. ..| -|++|||+|.+.. ...+.||..|+. ....+.+|.+|+.+..+.+
T Consensus 100 d~IRelie~~~-~~P~~~~~KVvIIDEad~Lt~--------------~A~NALLK~LEE--pp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 100 DDIRELIEQTK-YKPSMARFKIFIIDEVHMLTK--------------EAFNALLKTLEE--PPSYVKFILATTDPLKLPA 162 (535)
T ss_pred HHHHHHHHHHh-hCcccCCeEEEEEECcccCCH--------------HHHHHHHHHHhh--cCCceEEEEEECChhhCch
Confidence 44555554432 223 4999999987731 335566666664 3455667777788899999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
++++ |+ ..++|..++.++....++..+...+.. .+..+..++....| +.+++.+++..++..+
T Consensus 163 tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 163 TILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhc
Confidence 9999 86 688999999999888888877766543 22245566666554 7777778877776654
No 173
>KOG1969|consensus
Probab=97.28 E-value=0.0061 Score=62.14 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=92.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHH--------HcCCeEEEeccccccccccCCCCCCCcHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAK--------ENSPAIIFIDEIDAIATKRFDAQTGADRE 72 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~--------~~~P~II~iDeiD~l~~~r~~~~~~~~~~ 72 (362)
|.||+.||+++|..+++|+.|+=-+. ..++.-...|- ..+|.+++|||||-- ...
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~------~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-----------~~~ 402 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTA------PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-----------PRA 402 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccH------HHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------cHH
Confidence 57999999999999999999976432 22222222221 256999999999932 122
Q ss_pred HHHHHHHHHHhc--cCC-CCC-------------CCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHH
Q psy6770 73 VQRILLELLNQM--DGF-DQT-------------TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI 136 (362)
Q Consensus 73 ~~~~l~~lL~~l--d~l-~~~-------------~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~ 136 (362)
...++..++..- ... ++. =.-.+|+.+|.. --|||+.---|.+.|.|..|...--.+=++..
T Consensus 403 ~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~I 480 (877)
T KOG1969|consen 403 AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEI 480 (877)
T ss_pred HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHH
Confidence 233444443310 000 000 014577888854 45777643378899999999877666666666
Q ss_pred HccCCCCCc-CCHHHHHhcCCCCcHhhHHHHHHHHHHhhcc
Q psy6770 137 TAKMNLSDE-VDLEDYVARPDRISGADINAICQEVIMATNR 176 (362)
Q Consensus 137 ~~~~~~~~~-~dl~~la~~t~g~s~~di~~l~~~a~~~~~r 176 (362)
+...++..+ ..+..|++. +..||++.++.....+.+
T Consensus 481 C~rE~mr~d~~aL~~L~el----~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 481 CHRENMRADSKALNALCEL----TQNDIRSCINTLQFLASN 517 (877)
T ss_pred HhhhcCCCCHHHHHHHHHH----hcchHHHHHHHHHHHHHh
Confidence 665555422 234455544 556777777665554443
No 174
>KOG0745|consensus
Probab=97.26 E-value=0.0012 Score=63.41 Aligned_cols=86 Identities=24% Similarity=0.409 Sum_probs=59.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhh-hhcCch-HHHHHHHHHHHH----HcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLAK----ENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~-~~~ges-e~~l~~~F~~a~----~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
+|||+.||.-+++||..-+|+.+.. .|+||- |..|.+++..|. ..+..||||||+|.|..+..+.+..-|-.-.
T Consensus 240 TllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGE 319 (564)
T KOG0745|consen 240 TLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGE 319 (564)
T ss_pred hHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccch
Confidence 5899999999999999999999985 599964 777888887663 2234899999999998554333322121112
Q ss_pred HHHHHHHHhccC
Q psy6770 75 RILLELLNQMDG 86 (362)
Q Consensus 75 ~~l~~lL~~ld~ 86 (362)
.+-..||..+++
T Consensus 320 GVQQaLLKllEG 331 (564)
T KOG0745|consen 320 GVQQALLKLLEG 331 (564)
T ss_pred hHHHHHHHHhcc
Confidence 333444444444
No 175
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0043 Score=63.52 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+.+.+... ..-||+|||+|.+.. ...+.||..|+. ....+++|.+|+.++.+.+
T Consensus 114 vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------------~a~naLLKtLEe--Pp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 114 VDDIREIIESVRYRPVSARYKVYIIDEVHMLST--------------AAFNALLKTLEE--PPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------------HHHHHHHHHHHh--CCCCeEEEEEeCChhhhhH
Confidence 45577777766532 246999999998731 235566666664 3456777777788888988
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCC-cCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSD-EVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~-~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
.+++ |+ ..++|..|+.++....++..+.+.+..- +..+..++..+.| +..++.+.+.+++..
T Consensus 178 tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkli~~ 240 (598)
T PRK09111 178 TVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQAIAH 240 (598)
T ss_pred HHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhh
Confidence 8988 87 5799999999999999988887665432 2234555655544 677777777665443
No 176
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.20 E-value=0.0083 Score=61.90 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=38.0
Q ss_pred CeEEEE-EcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCC
Q psy6770 92 NVKVIM-ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 141 (362)
Q Consensus 92 ~v~vi~-tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~ 141 (362)
.+++|+ ||+.++.+++++++ ||. .+++++++.++...|++..+....
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKIN 370 (615)
T ss_pred eEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcC
Confidence 355555 56678999999998 986 578888999999999999888654
No 177
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.11 E-value=0.0021 Score=62.87 Aligned_cols=107 Identities=25% Similarity=0.349 Sum_probs=65.0
Q ss_pred CcHHHHHHhhhCC-------cEEEEec----hhhhhhhcCc--hH----HHHHHHHHHHHHc--CCeEEEeccccccccc
Q psy6770 1 YLLCTSFDTELVT-------AFIRVVG----SEFVQKYLGE--GP----RMVRDVFRLAKEN--SPAIIFIDEIDAIATK 61 (362)
Q Consensus 1 slLakaiA~e~~~-------~~~~v~~----s~l~~~~~ge--se----~~l~~~F~~a~~~--~P~II~iDeiD~l~~~ 61 (362)
|.+|+.+|..++. ..+.++. .++++.+... +- ..+.++.+.|+.. .|++++||||+.--..
T Consensus 208 T~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ 287 (459)
T PRK11331 208 TFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS 287 (459)
T ss_pred HHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH
Confidence 5689999988753 2333433 2444333211 11 1234455666653 5899999999965332
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhcc--------------------CCCCCCCeEEEEEcCCCC----CCCccccCCCccee
Q psy6770 62 RFDAQTGADREVQRILLELLNQMD--------------------GFDQTTNVKVIMATNRAD----TLDPALLRPGRLDR 117 (362)
Q Consensus 62 r~~~~~~~~~~~~~~l~~lL~~ld--------------------~l~~~~~v~vi~tTn~~~----~ld~al~r~gRf~~ 117 (362)
+++.++++.|+ .+.-..++.+|+|+|..+ .+|.|++| ||..
T Consensus 288 -------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f 352 (459)
T PRK11331 288 -------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF 352 (459)
T ss_pred -------------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe
Confidence 22223222222 234457899999999988 79999999 9955
Q ss_pred EEEccC
Q psy6770 118 KIEFPL 123 (362)
Q Consensus 118 ~i~i~~ 123 (362)
|++.+
T Consensus 353 -i~i~p 357 (459)
T PRK11331 353 -IDIEP 357 (459)
T ss_pred -EEecC
Confidence 55553
No 178
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.003 Score=61.17 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=93.3
Q ss_pred cHHHHHHhhhC-----CcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 2 LLCTSFDTELV-----TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 2 lLakaiA~e~~-----~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
-|.+|++++.. +.++.++...+...++...-..=..-|+.-- +=.+++|||++.+.++. ..+.+.-.+
T Consensus 128 HLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~-----~~qeefFh~ 200 (408)
T COG0593 128 HLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE-----RTQEEFFHT 200 (408)
T ss_pred HHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh-----hHHHHHHHH
Confidence 36667766654 3577788877776554332111111233322 22799999999997653 112222334
Q ss_pred HHHHHHhccCCCCCCCeEEEEEcCCCCCCC---ccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCCCcCC-HHH
Q psy6770 77 LLELLNQMDGFDQTTNVKVIMATNRADTLD---PALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLSDEVD-LED 150 (362)
Q Consensus 77 l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld---~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~~~~d-l~~ 150 (362)
+|.+. ..++-+|+.+-..|..+. +.+++ ||. ..+.+.+|+.+.|..|++......++.-.-+ +..
T Consensus 201 FN~l~-------~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~ 271 (408)
T COG0593 201 FNALL-------ENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEF 271 (408)
T ss_pred HHHHH-------hcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 44443 344556666666677654 78888 986 5668889999999999999777665543223 333
Q ss_pred HHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 151 YVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 151 la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
++.+ -.=+..++..++......+
T Consensus 272 la~~-~~~nvReLegaL~~l~~~a 294 (408)
T COG0593 272 LAKR-LDRNVRELEGALNRLDAFA 294 (408)
T ss_pred HHHH-hhccHHHHHHHHHHHHHHH
Confidence 4444 3345666666665554433
No 179
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.05 E-value=0.0025 Score=67.63 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=57.8
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh-----ccCCCC-C--CC---CHHHHhhC-CCCC
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT-----AKMNLS-D--EV---DLEDYVAR-PDRI 289 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l-----~~~~~~-~--~~---~~~~la~~-~~g~ 289 (362)
+++++|+|||.++.||+++++ ||+ .|.|+.|+.+++..|++.++ ....+. . .+ .+..+++. |..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 579999999999999999999 996 78999999999999999887 211221 1 12 34445542 2222
Q ss_pred CH----HHHHHHHHHHHHHHHH
Q psy6770 290 SG----ADINAICQEAGMHAVR 307 (362)
Q Consensus 290 sg----adi~~~~~~a~~~a~~ 307 (362)
.. ..|+.+|+.++...+.
T Consensus 539 g~R~l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAVKLVE 560 (775)
T ss_pred CChHHHHHHHHHHHHHHHHHHh
Confidence 22 3566677777666554
No 180
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0018 Score=64.42 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 30 EGPRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 30 ese~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+...+|.+-+.+.- ...-|.+|||+|-+. +..+|.||..++. +...|++|.+|..|+.+
T Consensus 99 ~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLEE--PP~hV~FIlATTe~~Ki 162 (515)
T COG2812 99 TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLEE--PPSHVKFILATTEPQKI 162 (515)
T ss_pred cChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhccccc--CccCeEEEEecCCcCcC
Confidence 345566666666642 235699999999773 4668888887774 56789999999999999
Q ss_pred CccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCC-HHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 106 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVD-LEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 106 d~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~d-l~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
++.+++ |+ .++.|..-+.++....+...+.+.++.-+.+ +.-++....| +.+|..+++..+...+
T Consensus 163 p~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 163 PNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIAFG 228 (515)
T ss_pred chhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHHcc
Confidence 999999 88 6688888888899999999888777664333 4455555444 6677777777776654
No 181
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.03 E-value=0.00034 Score=49.23 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHh
Q psy6770 311 YIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFE 344 (362)
Q Consensus 311 ~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~ 344 (362)
.+|+.+||+.|+++++||+. .+.++|++|+++|+
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 37899999999999999998 78899999999996
No 182
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.02 E-value=0.009 Score=64.07 Aligned_cols=123 Identities=23% Similarity=0.363 Sum_probs=78.0
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhh------------hcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCC
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQK------------YLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDA 65 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~------------~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~ 65 (362)
+.+|++||..+ +.+++.++++.+... |+|-.+ -..+.+..+...-+||||||||.+-
T Consensus 609 t~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~------ 680 (852)
T TIGR03346 609 TELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAH------ 680 (852)
T ss_pred HHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCC------
Confidence 46899999877 468999998765432 122111 1123344444445799999999663
Q ss_pred CCCCcHHHHHHHHHHHHhc---cCC---CCCCCeEEEEEcCCCCC-------------------------CCccccCCCc
Q psy6770 66 QTGADREVQRILLELLNQM---DGF---DQTTNVKVIMATNRADT-------------------------LDPALLRPGR 114 (362)
Q Consensus 66 ~~~~~~~~~~~l~~lL~~l---d~l---~~~~~v~vi~tTn~~~~-------------------------ld~al~r~gR 114 (362)
+.....+.++|.+= |+- -.-.+.++|+|||.... ..|.|.. |
T Consensus 681 -----~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--R 753 (852)
T TIGR03346 681 -----PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--R 753 (852)
T ss_pred -----HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--C
Confidence 22334444444220 110 01246889999998321 2356776 9
Q ss_pred ceeEEEccCCCHHHHHHHHHHHHc
Q psy6770 115 LDRKIEFPLPDRRQKRLVFSTITA 138 (362)
Q Consensus 115 f~~~i~i~~P~~~~r~~il~~~~~ 138 (362)
+|.++.|.+++.+...+|+...+.
T Consensus 754 id~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 754 IDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred cCeEEecCCcCHHHHHHHHHHHHH
Confidence 999999999999999999987765
No 183
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.96 E-value=0.002 Score=55.34 Aligned_cols=99 Identities=22% Similarity=0.297 Sum_probs=61.7
Q ss_pred cHHHHHHhhhCC----cEEEEechhhhhhhcCchHHHHHHHHHHH----HHcCCeEEEeccccccccccCCCCCCCcHHH
Q psy6770 2 LLCTSFDTELVT----AFIRVVGSEFVQKYLGEGPRMVRDVFRLA----KENSPAIIFIDEIDAIATKRFDAQTGADREV 73 (362)
Q Consensus 2 lLakaiA~e~~~----~~~~v~~s~l~~~~~gese~~l~~~F~~a----~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~ 73 (362)
.||+++|..++. +++.++++.+... ++.+..+..+...+ ......|||+||||.+.+.. ..+.+..-
T Consensus 18 ~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~~---~~~~~v~~ 92 (171)
T PF07724_consen 18 ELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPSN---SGGADVSG 92 (171)
T ss_dssp HHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHTT---TTCSHHHH
T ss_pred HHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhccccc---cccchhhH
Confidence 589999999997 9999999988761 12223333333222 11112499999999998862 22223333
Q ss_pred HHHHHHHHHhccCC---------CCCCCeEEEEEcCCCCCC
Q psy6770 74 QRILLELLNQMDGF---------DQTTNVKVIMATNRADTL 105 (362)
Q Consensus 74 ~~~l~~lL~~ld~l---------~~~~~v~vi~tTn~~~~l 105 (362)
..+.+.||+.|++= -..+++++|+|+|.-...
T Consensus 93 ~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 93 EGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp HHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHH
T ss_pred HHHHHHHHHHhcccceecccceEEEeCCceEEEecccccch
Confidence 45666677666531 123579999999975543
No 184
>PRK06620 hypothetical protein; Validated
Probab=96.95 E-value=0.0059 Score=54.40 Aligned_cols=102 Identities=14% Similarity=0.240 Sum_probs=65.5
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCC--CCccccCCCcce--eEEEcc
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT--LDPALLRPGRLD--RKIEFP 122 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~--ld~al~r~gRf~--~~i~i~ 122 (362)
..+++|||||.+ .+ ..+-.+++.+. +.++.++|+++..|.. + +++++ |+. .++.+.
T Consensus 86 ~d~lliDdi~~~----------~~----~~lf~l~N~~~---e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~ 145 (214)
T PRK06620 86 YNAFIIEDIENW----------QE----PALLHIFNIIN---EKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLN 145 (214)
T ss_pred CCEEEEeccccc----------hH----HHHHHHHHHHH---hcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeC
Confidence 378999999943 11 12334443333 4456777877766664 5 78888 986 368999
Q ss_pred CCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHH
Q psy6770 123 LPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQE 169 (362)
Q Consensus 123 ~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~ 169 (362)
.|+.+.+..+++.......+. ++.-++.++.+.. =+.+.+..++..
T Consensus 146 ~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~-~d~r~l~~~l~~ 192 (214)
T PRK06620 146 SPDDELIKILIFKHFSISSVTISRQIIDFLLVNLP-REYSKIIEILEN 192 (214)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 999999999998888755443 2223555665543 345555555554
No 185
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.93 E-value=0.0044 Score=66.20 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=73.2
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhh-----h-------hcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCC
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQ-----K-------YLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDA 65 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~-----~-------~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~ 65 (362)
+.||++||..+ +.+++.++.+++.. + |+|-.+ ...+.+..+....+||+|||+|..-
T Consensus 553 t~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~------ 624 (821)
T CHL00095 553 TELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAH------ 624 (821)
T ss_pred HHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCC------
Confidence 46899999987 46899998877632 1 223211 1234455555555899999999763
Q ss_pred CCCCcHHHHHHHHHHHHhccCC---------CCCCCeEEEEEcCCCCC--------------------------------
Q psy6770 66 QTGADREVQRILLELLNQMDGF---------DQTTNVKVIMATNRADT-------------------------------- 104 (362)
Q Consensus 66 ~~~~~~~~~~~l~~lL~~ld~l---------~~~~~v~vi~tTn~~~~-------------------------------- 104 (362)
+ .+.+.|++.|+.- -...+.++|+|||....
T Consensus 625 -----~---~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~ 696 (821)
T CHL00095 625 -----P---DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNE 696 (821)
T ss_pred -----H---HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHH
Confidence 2 3344444444421 01257899999997532
Q ss_pred -----CCccccCCCcceeEEEccCCCHHHHHHHHHHHHc
Q psy6770 105 -----LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA 138 (362)
Q Consensus 105 -----ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~ 138 (362)
..|.++. |+|.+|.|.+.+.++..+|+...+.
T Consensus 697 ~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 697 ELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred HHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 1133444 6666777777777777776665554
No 186
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.93 E-value=0.0036 Score=60.29 Aligned_cols=103 Identities=23% Similarity=0.210 Sum_probs=75.0
Q ss_pred CCeEEEEecCCCC---CCCccccCCCCcc-eeEEecCCCHHHHHHHHHHHhccCCCCCCCC---HHHHhh---CCCCCCH
Q psy6770 222 GNLQVIMATNRAD---TLDPALLRPGRLD-RKIEFPLPDRRQKRLVFSTITAKMNLSDEVD---LEDYVA---RPDRISG 291 (362)
Q Consensus 222 ~~v~vi~aTn~~~---~lD~a~~RpgRfd-~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~---~~~la~---~~~g~sg 291 (362)
.++.+|++||.++ .+++.+.+ ||. ..++|+.++.++..+|++..+........++ ++.++. .+.|. .
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd-~ 240 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD-A 240 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC-H
Confidence 5789999999987 58888877 775 6799999999999999999885211111121 233333 33443 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 292 ADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 292 adi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
..+-.+|+.|+..|..++...|+.+|+.+|+.....
T Consensus 241 R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 241 RKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK 276 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 244458899999998888889999999999887754
No 187
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.86 E-value=0.0051 Score=59.89 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=81.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCC---CCCccccCCCCcc-eeEEecCCCHHHHHHHHHHHhccCC---CCCCCCH
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRAD---TLDPALLRPGRLD-RKIEFPLPDRRQKRLVFSTITAKMN---LSDEVDL 279 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~---~lD~a~~RpgRfd-~~i~~~~P~~~~r~~i~~~~l~~~~---~~~~~~~ 279 (362)
++..++..++.... .++.+|+++|.++ .+|+.+.. ||. ..|+|+.++.++..++++..+..-- .-++-.+
T Consensus 158 ~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l 234 (394)
T PRK00411 158 VLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVL 234 (394)
T ss_pred HHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHH
Confidence 34455544443332 3688888888764 56777655 664 5789999999999999998875321 1122235
Q ss_pred HHHhhCCCCCCH--HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 280 EDYVARPDRISG--ADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 280 ~~la~~~~g~sg--adi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
+.+++.+.+.+| ..+-.+|..|+..|..++...|+.+|+..|+..+.+
T Consensus 235 ~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 235 DLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 667776654443 234478899999998888889999999999988744
No 188
>PRK09087 hypothetical protein; Validated
Probab=96.86 E-value=0.0045 Score=55.64 Aligned_cols=92 Identities=23% Similarity=0.265 Sum_probs=59.3
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC--CC-CccccCCCcce--eEEEcc
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD--TL-DPALLRPGRLD--RKIEFP 122 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~--~l-d~al~r~gRf~--~~i~i~ 122 (362)
.+|+|||+|.+.. .... +-.+++.+. +.++.++|.++..|. .. .+.+++ ||. ..+++.
T Consensus 89 ~~l~iDDi~~~~~--------~~~~----lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~ 151 (226)
T PRK09087 89 GPVLIEDIDAGGF--------DETG----LFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIG 151 (226)
T ss_pred CeEEEECCCCCCC--------CHHH----HHHHHHHHH---hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecC
Confidence 5788999997521 1122 333333222 334556666665554 33 678888 986 889999
Q ss_pred CCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCC
Q psy6770 123 LPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPD 156 (362)
Q Consensus 123 ~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~ 156 (362)
.|+.+.|..+++..+....+. ++.-++.++.+..
T Consensus 152 ~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 152 EPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME 186 (226)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 999999999999999876543 2224556666644
No 189
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.017 Score=59.48 Aligned_cols=120 Identities=17% Similarity=0.235 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+.+.+... ..-|++|||+|.+.. ...+.|+..|+. .....++|.+|+.+..+-+
T Consensus 103 vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~--------------~a~naLLK~LEe--pp~~tifIL~tt~~~kIl~ 166 (614)
T PRK14971 103 VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ--------------AAFNAFLKTLEE--PPSYAIFILATTEKHKILP 166 (614)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEEECcccCCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCCchhchH
Confidence 45566666665432 134999999998732 235566666664 3345667777777889999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCc-CCHHHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDE-VDLEDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~-~dl~~la~~t~g~s~~di~~l~~~a~ 171 (362)
++++ |+ ..++|..++.++....++..+...++.-+ ..+..++..+. -+.+++.+.+....
T Consensus 167 tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~-gdlr~al~~Lekl~ 227 (614)
T PRK14971 167 TILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD-GGMRDALSIFDQVV 227 (614)
T ss_pred HHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 9998 87 56999999999988888887776665422 23556666653 35555555554443
No 190
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.017 Score=59.34 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...|+.+-+.+.. ...-||+|||+|.+.. ...+.||..|+. ....+++|.+|+.+..+-+
T Consensus 109 vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------~a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 109 VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------AAFNAFLKTLEE--PPPHAIFIFATTELHKIPA 172 (620)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhH
Confidence 3455555544421 1246999999998742 224566666664 3345666666777889988
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
.+++ |. ..++|..++..+....++..+...+.. ++..++.++..+.| +..++.+.+.....
T Consensus 173 TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeKL~~ 234 (620)
T PRK14954 173 TIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQVIA 234 (620)
T ss_pred HHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 8888 76 689999999999888888777654432 22245566666554 44444444444333
No 191
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.0083 Score=58.62 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHH---c-CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKE---N-SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~---~-~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+.+.+.. . ..-||+|||+|.+.. ...+.|+..++. ..+..++|.+|+.+..+-+
T Consensus 109 id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 109 VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------AAFNAFLKTLEE--PPPHAIFIFATTELHKIPA 172 (397)
T ss_pred HHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHH
Confidence 3455655555531 1 235999999998742 123445555553 3345666666677888888
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
++++ |+. .+++..++.++....++..++..+.. ++..++.++..+.| +...+.+.+..+...+
T Consensus 173 tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~~~ 236 (397)
T PRK14955 173 TIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQVIAFS 236 (397)
T ss_pred HHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 8887 774 78999999988888888877655432 22235556655543 5666666666655544
No 192
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.023 Score=58.46 Aligned_cols=119 Identities=17% Similarity=0.248 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCcc
Q psy6770 33 RMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 108 (362)
Q Consensus 33 ~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~a 108 (362)
..++.+-+.+.. ...-||+|||+|.+.. ...+.||..++. ....+++|.+++.++.+.+.
T Consensus 103 d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------------~a~naLLk~LEe--pp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 103 DDAREIIERVQFRPALARYKVYIIDEVHMLST--------------AAFNALLKTLEE--PPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred HHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChhhhhHH
Confidence 345555444332 2246999999997741 235556666664 23456777777778888888
Q ss_pred ccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 109 LLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 109 l~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~ 171 (362)
+++ |+ ..++|..++..+....++..+...+.. ++..+..++..+.| +..++.+.++...
T Consensus 167 I~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL~ 226 (585)
T PRK14950 167 ILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQLA 226 (585)
T ss_pred HHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 887 77 468999999999888888877665543 22235566666554 6666666666543
No 193
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.014 Score=55.53 Aligned_cols=87 Identities=14% Similarity=0.309 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+-+.+.. .+.-|++||++|.+-. ...+.||..++. +..++++|.+|+.++.+.|
T Consensus 88 id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~--------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~ 151 (328)
T PRK05707 88 VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNR--------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLP 151 (328)
T ss_pred HHHHHHHHHHHhhccccCCCeEEEECChhhCCH--------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcH
Confidence 4556665555543 2356889999998742 446666766664 4568889999999999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 137 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~ 137 (362)
.+++ |+.. +.|++|+.++-.+.+....
T Consensus 152 TI~S--Rc~~-~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 152 TIKS--RCQQ-QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred HHHh--hcee-eeCCCcCHHHHHHHHHHhc
Confidence 9999 9854 8999999998877776543
No 194
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.019 Score=55.11 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=55.6
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCC
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 125 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~ 125 (362)
+.-||+|||+|.+-. ...+.+|..++. ...+.++|..|+.|+.+.|.+++ |+ ..+.+++|+
T Consensus 141 ~~rVviIDeAd~l~~--------------~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~ 201 (351)
T PRK09112 141 NWRIVIIDPADDMNR--------------NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLD 201 (351)
T ss_pred CceEEEEEchhhcCH--------------HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCC
Confidence 457999999998832 234556666664 34466677777889999999998 98 699999999
Q ss_pred HHHHHHHHHHH
Q psy6770 126 RRQKRLVFSTI 136 (362)
Q Consensus 126 ~~~r~~il~~~ 136 (362)
.++-..++...
T Consensus 202 ~~~~~~~L~~~ 212 (351)
T PRK09112 202 DDELKKALSHL 212 (351)
T ss_pred HHHHHHHHHHh
Confidence 99999998874
No 195
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.70 E-value=0.0063 Score=56.65 Aligned_cols=98 Identities=13% Similarity=0.214 Sum_probs=68.3
Q ss_pred hhhhhhhhhhhhhhhccCCeEEEEecCC--CCC---CCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCC
Q psy6770 205 RLVFSTITAKMNFMLNIGNLQVIMATNR--ADT---LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVD 278 (362)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~v~vi~aTn~--~~~---lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~ 278 (362)
..+.+.++..|+.. .++++||+||+. ++. ++|++.+ ||+..|+||.++.+++..|++.++.+.... +.-.
T Consensus 144 ~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a 219 (284)
T TIGR02880 144 QEAIEILLQVMENQ--RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA 219 (284)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH
Confidence 34567788877743 367888888764 333 4899999 999999999999999999999999875432 1111
Q ss_pred HHHHhhC------CCCCC-HHHHHHHHHHHHHHHH
Q psy6770 279 LEDYVAR------PDRIS-GADINAICQEAGMHAV 306 (362)
Q Consensus 279 ~~~la~~------~~g~s-gadi~~~~~~a~~~a~ 306 (362)
++.+.+. -+.+. +.++++++..|..+..
T Consensus 220 ~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~ 254 (284)
T TIGR02880 220 EEAFADYIALRRTQPHFANARSIRNAIDRARLRQA 254 (284)
T ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH
Confidence 2223222 13333 7899999988865544
No 196
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.63 E-value=0.021 Score=52.36 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=64.1
Q ss_pred hhhhhhhhhhhhhhccCCeEEEEecCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCH
Q psy6770 206 LVFSTITAKMNFMLNIGNLQVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDL 279 (362)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~v~vi~aTn~~~-----~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~ 279 (362)
..++.++..|+... +++++|++++..+ .++|++.+ ||+..|+|+.++.+++..|++.++...... ++--+
T Consensus 128 ~~i~~Ll~~~e~~~--~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~ 203 (261)
T TIGR02881 128 EAIDTLVKGMEDNR--NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAK 203 (261)
T ss_pred HHHHHHHHHHhccC--CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHH
Confidence 34667777776543 4566666654322 37899999 999999999999999999999999765432 11113
Q ss_pred HHHhh---------CCCCCCHHHHHHHHHHHHHHHH
Q psy6770 280 EDYVA---------RPDRISGADINAICQEAGMHAV 306 (362)
Q Consensus 280 ~~la~---------~~~g~sgadi~~~~~~a~~~a~ 306 (362)
..+++ ....-.|..+.+++..|..+..
T Consensus 204 ~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 204 WKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 33322 1122347788888888765554
No 197
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.60 E-value=0.016 Score=56.83 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=81.3
Q ss_pred hhhhhhhhhhhccCCeEEEEecCCCCC---CCccccCCCCcce--eEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHH
Q psy6770 209 STITAKMNFMLNIGNLQVIMATNRADT---LDPALLRPGRLDR--KIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDY 282 (362)
Q Consensus 209 ~~~l~~~~~~~~~~~v~vi~aTn~~~~---lD~a~~RpgRfd~--~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~l 282 (362)
.+++..++...+.+..+||.+++.|.. +++.+.. ||.. .+.++.|+.++|..|++..+...++. ++--++.|
T Consensus 219 ~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~i 296 (405)
T TIGR00362 219 EEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFI 296 (405)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345555666655566677777666765 4577776 9975 78999999999999999998765443 22236667
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 283 a~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
|+... -+..+++.++..-...+...+ .+++.+.+.+++...
T Consensus 297 a~~~~-~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 297 AKNIR-SNVRELEGALNRLLAYASLTG-KPITLELAKEALKDL 337 (405)
T ss_pred HHhcC-CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 76654 367889888888776665544 678999998888875
No 198
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.48 E-value=0.00047 Score=56.74 Aligned_cols=101 Identities=27% Similarity=0.292 Sum_probs=57.0
Q ss_pred CcHHHHHHhhhCCcEEEEechhhh------hhhcCc--hHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFV------QKYLGE--GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADRE 72 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~------~~~~ge--se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~ 72 (362)
|.||+.+|..++.+++.++++... +.|.-. ........+-.+.. .++|++|||++..- ..
T Consensus 13 t~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~-----------~~ 80 (139)
T PF07728_consen 13 TTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP-----------PE 80 (139)
T ss_dssp HHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG-------------HH
T ss_pred HHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-----------HH
Confidence 579999999999999999887532 222211 00000000000111 57999999999652 22
Q ss_pred HHHHHHHHHHhccCC--------CCCC------CeEEEEEcCCCC----CCCccccCCCcc
Q psy6770 73 VQRILLELLNQMDGF--------DQTT------NVKVIMATNRAD----TLDPALLRPGRL 115 (362)
Q Consensus 73 ~~~~l~~lL~~ld~l--------~~~~------~v~vi~tTn~~~----~ld~al~r~gRf 115 (362)
....+..++..-.-. ...+ +..+|+|+|..+ .+++++++ ||
T Consensus 81 v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 81 VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 334444444321100 0111 389999999988 99999999 87
No 199
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.42 E-value=0.058 Score=48.28 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=96.7
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHc-CCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN-SPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~-~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|+|+||+-++. |..+++|+.+++.. +-.+++..+.. .+.|||+|++- |. .+...-+.
T Consensus 99 SSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS--Fe--------~gd~~yK~ 159 (287)
T COG2607 99 SSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLS--FE--------EGDDAYKA 159 (287)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCC--CC--------CCchHHHH
Confidence 78999998776 46899999988864 45577777765 36899999742 21 11122344
Q ss_pred HHHHHHhccC-C-CCCCCeEEEEEcCCCCCCCcccc-C-------------------CCcceeEEEccCCCHHHHHHHHH
Q psy6770 77 LLELLNQMDG-F-DQTTNVKVIMATNRADTLDPALL-R-------------------PGRLDRKIEFPLPDRRQKRLVFS 134 (362)
Q Consensus 77 l~~lL~~ld~-l-~~~~~v~vi~tTn~~~~ld~al~-r-------------------~gRf~~~i~i~~P~~~~r~~il~ 134 (362)
++..| +| + ....+|++-+|+|+-..++..+. + +-||..-+.|.+|+.++-..|+.
T Consensus 160 LKs~L---eG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~ 236 (287)
T COG2607 160 LKSAL---EGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVD 236 (287)
T ss_pred HHHHh---cCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHH
Confidence 55554 43 2 24568999999999887764332 1 23899999999999999999999
Q ss_pred HHHccCCCCCc-CCHH----HHHhcCCCCcHhhHHHHHHH
Q psy6770 135 TITAKMNLSDE-VDLE----DYVARPDRISGADINAICQE 169 (362)
Q Consensus 135 ~~~~~~~~~~~-~dl~----~la~~t~g~s~~di~~l~~~ 169 (362)
.+.+..+++-+ ..++ +.|..-.|=||.-..+.++.
T Consensus 237 ~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 237 HYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHH
Confidence 99988876532 1122 12223345555555555544
No 200
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.42 E-value=0.014 Score=62.53 Aligned_cols=123 Identities=24% Similarity=0.393 Sum_probs=76.6
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhh-----hc-------CchHHHHHHHHHHHHHcCC-eEEEeccccccccccCC
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQK-----YL-------GEGPRMVRDVFRLAKENSP-AIIFIDEIDAIATKRFD 64 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~-----~~-------gese~~l~~~F~~a~~~~P-~II~iDeiD~l~~~r~~ 64 (362)
|.||++||..+ +.+++.++++.+... .+ |..+ ...+..+....| ++|+|||+|.+-
T Consensus 612 T~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~---~g~l~~~v~~~p~~vLllDEieka~----- 683 (857)
T PRK10865 612 TELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE---GGYLTEAVRRRPYSVILLDEVEKAH----- 683 (857)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch---hHHHHHHHHhCCCCeEEEeehhhCC-----
Confidence 46899999887 457999999876432 11 2111 112233333344 899999999653
Q ss_pred CCCCCcHHHHHHHHHHHHhc---cCC---CCCCCeEEEEEcCCCC-------------------------CCCccccCCC
Q psy6770 65 AQTGADREVQRILLELLNQM---DGF---DQTTNVKVIMATNRAD-------------------------TLDPALLRPG 113 (362)
Q Consensus 65 ~~~~~~~~~~~~l~~lL~~l---d~l---~~~~~v~vi~tTn~~~-------------------------~ld~al~r~g 113 (362)
......+.+++..= ++- -...+.++|+|||... ...|+++.
T Consensus 684 ------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln-- 755 (857)
T PRK10865 684 ------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN-- 755 (857)
T ss_pred ------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--
Confidence 22334444444321 110 0123567888999731 23467777
Q ss_pred cceeEEEccCCCHHHHHHHHHHHHcc
Q psy6770 114 RLDRKIEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 114 Rf~~~i~i~~P~~~~r~~il~~~~~~ 139 (362)
|++.++.|.+++.+....|++..+..
T Consensus 756 Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 756 RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 99999999999998888888877754
No 201
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.016 Score=55.24 Aligned_cols=85 Identities=15% Similarity=0.301 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+.+.+... +--|++||++|.+-. ..-|.||..++. +.+++++|.+|+.|+.+.|
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~LLp 177 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNV--------------AAANALLKTLEE--PPPGTVFLLVSARIDRLLP 177 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCH--------------HHHHHHHHHhcC--CCcCcEEEEEECChhhCcH
Confidence 34566665554322 234999999998742 445667777774 6778999999999999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFST 135 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~ 135 (362)
.+++ |+ ..+.|++|+.++..+.+..
T Consensus 178 TI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 178 TILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 9999 99 6899999999888887765
No 202
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.41 E-value=0.017 Score=57.39 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=82.7
Q ss_pred hhhhhhhhhhhccCCeEEEEecCCCCC---CCccccCCCCcc--eeEEecCCCHHHHHHHHHHHhccCC--CCCCCCHHH
Q psy6770 209 STITAKMNFMLNIGNLQVIMATNRADT---LDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMN--LSDEVDLED 281 (362)
Q Consensus 209 ~~~l~~~~~~~~~~~v~vi~aTn~~~~---lD~a~~RpgRfd--~~i~~~~P~~~~r~~i~~~~l~~~~--~~~~~~~~~ 281 (362)
.+++..++...+.+..+||+++..|.. +++.+.. ||. ..+.+..|+.++|..|++..+...+ ++++ -++.
T Consensus 231 ~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e-~l~~ 307 (450)
T PRK00149 231 EEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDE-VLEF 307 (450)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHH
Confidence 345566666666666677777666665 6788776 997 5788999999999999999987543 3333 3667
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 282 la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
||+...| +..++..++......+...+ .+++...+.+++....
T Consensus 308 ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 308 IAKNITS-NVRELEGALNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHcCcCC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 7776543 67888888888876666554 5689999999998763
No 203
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.045 Score=52.76 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHH-cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC---CCCc
Q psy6770 32 PRMVRDVFRLAKE-NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD---TLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~-~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~---~ld~ 107 (362)
.+.++.+++.... ..+.||++||+|.++.+.+ ..+-+|+...+.. ..+|.+|+.+|..+ .+|+
T Consensus 108 ~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 108 LEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhh
Confidence 3445555555554 3467889999999986541 3455555444433 56789999999874 7788
Q ss_pred cccCCCcce-eEEEccCCCHHHHHHHHHHHHccCCCCCc--CCHHHHHhcCCCCcHhhHH---HHHHHHHHhhcc
Q psy6770 108 ALLRPGRLD-RKIEFPLPDRRQKRLVFSTITAKMNLSDE--VDLEDYVARPDRISGADIN---AICQEVIMATNR 176 (362)
Q Consensus 108 al~r~gRf~-~~i~i~~P~~~~r~~il~~~~~~~~~~~~--~dl~~la~~t~g~s~~di~---~l~~~a~~~~~r 176 (362)
-+.+ +|. ..|.||+.+.+|...|++......-..+. -+.-+++....+..++|.+ .+|+.|...|-+
T Consensus 175 rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 175 RVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred hhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHh
Confidence 8887 653 55899999999999999887764321111 1333444433333443544 455566555543
No 204
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.20 E-value=0.042 Score=52.99 Aligned_cols=86 Identities=14% Similarity=0.219 Sum_probs=62.3
Q ss_pred HHHHHHHHHHH----HcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCcc
Q psy6770 33 RMVRDVFRLAK----ENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 108 (362)
Q Consensus 33 ~~l~~~F~~a~----~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~a 108 (362)
..++.+-+.+. ..+|-||+|||+|.+-. ...+.||..+.. ...++++|.+|+.++.+.+.
T Consensus 124 dqiR~l~~~~~~~~~~~~~kVviIDead~m~~--------------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpt 187 (365)
T PRK07471 124 DEVRELISFFGLTAAEGGWRVVIVDTADEMNA--------------NAANALLKVLEE--PPARSLFLLVSHAPARLLPT 187 (365)
T ss_pred HHHHHHHHHhCcCcccCCCEEEEEechHhcCH--------------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHH
Confidence 44555544443 34578999999997731 334556655553 34567788899999999999
Q ss_pred ccCCCcceeEEEccCCCHHHHHHHHHHHH
Q psy6770 109 LLRPGRLDRKIEFPLPDRRQKRLVFSTIT 137 (362)
Q Consensus 109 l~r~gRf~~~i~i~~P~~~~r~~il~~~~ 137 (362)
+++ |+ ..+.++.|+.++-.+++....
T Consensus 188 i~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 188 IRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred hhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 888 87 678999999999888887654
No 205
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.17 E-value=0.032 Score=52.87 Aligned_cols=86 Identities=13% Similarity=0.235 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+-+.+... +--|++||++|.+-. ..-|.||..++. +..++++|.+|+.++.+-|
T Consensus 89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~--------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llp 152 (325)
T PRK06871 89 VDQVREINEKVSQHAQQGGNKVVYIQGAERLTE--------------AAANALLKTLEE--PRPNTYFLLQADLSAALLP 152 (325)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEechhhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCch
Confidence 45566655444322 235999999998742 345666766664 5678899999999999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTI 136 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~ 136 (362)
.+++ |+ ..+.|++|+.++..+.+...
T Consensus 153 TI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 153 TIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9999 88 66799999998877777654
No 206
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.038 Score=52.02 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=76.1
Q ss_pred cHHHHHHhhhC------------------------CcEEEEechhhhhhhcCchHHHHHHHHHHHHHc----CCeEEEec
Q psy6770 2 LLCTSFDTELV------------------------TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN----SPAIIFID 53 (362)
Q Consensus 2 lLakaiA~e~~------------------------~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~----~P~II~iD 53 (362)
.+|.++|++++ -+++++++++....- -....++.+-+..... ..-||+||
T Consensus 39 t~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiid 116 (325)
T COG0470 39 TAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIID 116 (325)
T ss_pred HHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeC
Confidence 46788888888 588999998765431 2344455544444332 35799999
Q ss_pred cccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHH
Q psy6770 54 EIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 133 (362)
Q Consensus 54 eiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il 133 (362)
|+|.+.. ..-+.++..+.. ...+..+|.+||.++.+-+.+++ |+ ..+.|++|+........
T Consensus 117 ead~mt~--------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 117 EADKLTE--------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred cHHHHhH--------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHh
Confidence 9998854 234444444442 56678899999999999999998 87 56788776665555444
Q ss_pred H
Q psy6770 134 S 134 (362)
Q Consensus 134 ~ 134 (362)
+
T Consensus 178 e 178 (325)
T COG0470 178 E 178 (325)
T ss_pred h
Confidence 4
No 207
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.018 Score=53.83 Aligned_cols=92 Identities=24% Similarity=0.392 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCC--------CCCCCeEEEEE----cCCCC
Q psy6770 36 RDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGF--------DQTTNVKVIMA----TNRAD 103 (362)
Q Consensus 36 ~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l--------~~~~~v~vi~t----Tn~~~ 103 (362)
+...+.|.++ .||||||||.++.+.+.++.+.+. ..+-..+|-.+.|- -..+.+++|++ ...|.
T Consensus 242 ~eAi~~aE~~--GIvFIDEIDKIa~~~~~g~~dvSR--EGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPS 317 (444)
T COG1220 242 QEAIDAAEQN--GIVFIDEIDKIAKRGGSGGPDVSR--EGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPS 317 (444)
T ss_pred HHHHHHHHhc--CeEEEehhhHHHhcCCCCCCCcch--hhhcccccccccCceeeccccccccceEEEEecCceecCChh
Confidence 3344444444 799999999999876533222222 34445566555553 23456888886 46688
Q ss_pred CCCccccCCCcceeEEEccCCCHHHHHHHH
Q psy6770 104 TLDPALLRPGRLDRKIEFPLPDRRQKRLVF 133 (362)
Q Consensus 104 ~ld~al~r~gRf~~~i~i~~P~~~~r~~il 133 (362)
++=|.|.- ||..++++...+.+.-..|+
T Consensus 318 DLiPELQG--RfPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 318 DLIPELQG--RFPIRVELDALTKEDFERIL 345 (444)
T ss_pred hcChhhcC--CCceEEEcccCCHHHHHHHH
Confidence 88889986 99999999999998888877
No 208
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.015 Score=60.52 Aligned_cols=120 Identities=23% Similarity=0.388 Sum_probs=80.8
Q ss_pred cHHHHHHhhhC---CcEEEEechhhhhh------------hcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCC
Q psy6770 2 LLCTSFDTELV---TAFIRVVGSEFVQK------------YLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQ 66 (362)
Q Consensus 2 lLakaiA~e~~---~~~~~v~~s~l~~~------------~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~ 66 (362)
-||++||..+. -.++.++.|++..+ |+|-.+- -.+-+..+++-.|||++||||.--
T Consensus 536 ELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH------- 606 (786)
T COG0542 536 ELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH------- 606 (786)
T ss_pred HHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC-------
Confidence 58999999999 89999999987632 3442110 112234444445999999999642
Q ss_pred CCCcHHHHHHHHHHHHhccC--C-CC------CCCeEEEEEcCCCCC----------------------------CCccc
Q psy6770 67 TGADREVQRILLELLNQMDG--F-DQ------TTNVKVIMATNRADT----------------------------LDPAL 109 (362)
Q Consensus 67 ~~~~~~~~~~l~~lL~~ld~--l-~~------~~~v~vi~tTn~~~~----------------------------ld~al 109 (362)
+ .+++-||+-||. + +. -.+.++|+|||.-.. ..|++
T Consensus 607 ----p---dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEF 679 (786)
T COG0542 607 ----P---DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEF 679 (786)
T ss_pred ----H---HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHH
Confidence 3 567777777763 1 11 135889999986421 13556
Q ss_pred cCCCcceeEEEccCCCHHHHHHHHHHHHcc
Q psy6770 110 LRPGRLDRKIEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 110 ~r~gRf~~~i~i~~P~~~~r~~il~~~~~~ 139 (362)
+. |+|.+|.|..-+.+...+|+...+..
T Consensus 680 LN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 680 LN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred Hh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 66 88888888888888888888776654
No 209
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.03 E-value=0.027 Score=51.65 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=72.2
Q ss_pred HHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC---CCC----ccccCCCcc
Q psy6770 43 KENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD---TLD----PALLRPGRL 115 (362)
Q Consensus 43 ~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~---~ld----~al~r~gRf 115 (362)
....+.+|+|||+|.+-.. ....+..+.+... .+...+.|..+..|+ .+. ..+.+ |+
T Consensus 120 ~~~~~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~---~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~ 183 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPE-----------LLEELRMLSNFQT---DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RI 183 (269)
T ss_pred hCCCCeEEEEECcccCCHH-----------HHHHHHHHhCccc---CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--he
Confidence 3456789999999987321 1223333322211 122222222223332 111 23555 78
Q ss_pred eeEEEccCCCHHHHHHHHHHHHccCCCC-----CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhccc
Q psy6770 116 DRKIEFPLPDRRQKRLVFSTITAKMNLS-----DEVDLEDYVARPDRISGADINAICQEVIMATNRA 177 (362)
Q Consensus 116 ~~~i~i~~P~~~~r~~il~~~~~~~~~~-----~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~ 177 (362)
...+++++.+.++...++...+...+.. .+..+..+++.+.|... .|..+|..+...+...
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE 249 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc
Confidence 8899999999999999998887654321 22356778888999854 4999999998776443
No 210
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.051 Score=51.28 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=73.0
Q ss_pred cHHHHHHhhhCC--------cEEEEechhhhhhhcCchHHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCC
Q psy6770 2 LLCTSFDTELVT--------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGA 69 (362)
Q Consensus 2 lLakaiA~e~~~--------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~ 69 (362)
.+|+++|..+.+ +++.+.+. .++. -+...++.+-+.+.. .+.-|++||++|.+-.
T Consensus 41 ~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~--------- 107 (313)
T PRK05564 41 LLAKEIALKILGKSQQREYVDIIEFKPI--NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE--------- 107 (313)
T ss_pred HHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------
Confidence 478888887654 33344331 1111 123446665554432 2346999999987731
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHH
Q psy6770 70 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 137 (362)
Q Consensus 70 ~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~ 137 (362)
..-+.||..++. +.+++++|.+|+.++.+-+.+++ |+ ..++|+.|+.++....++...
T Consensus 108 -----~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 108 -----QAQNAFLKTIEE--PPKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred -----HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 234566666664 44567777777889999999998 88 589999999988877776544
No 211
>KOG0989|consensus
Probab=95.90 E-value=0.02 Score=52.90 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=61.8
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHH
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 127 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~ 127 (362)
-||+|||+|++... .-+.|..-|+. ....+.+|..+|+++.|.+-+.+ |+.+ +.|+.-..+
T Consensus 131 KiiIlDEcdsmtsd--------------aq~aLrr~mE~--~s~~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~ 191 (346)
T KOG0989|consen 131 KIIILDECDSMTSD--------------AQAALRRTMED--FSRTTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDE 191 (346)
T ss_pred eEEEEechhhhhHH--------------HHHHHHHHHhc--cccceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchH
Confidence 59999999988532 12333344443 35678889999999999999998 9855 566655555
Q ss_pred HHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHH
Q psy6770 128 QKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAIC 167 (362)
Q Consensus 128 ~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~ 167 (362)
.....++......++. ++-.++.++.. +++|++.+.
T Consensus 192 ~iv~rL~~Ia~~E~v~~d~~al~~I~~~----S~GdLR~Ai 228 (346)
T KOG0989|consen 192 DIVDRLEKIASKEGVDIDDDALKLIAKI----SDGDLRRAI 228 (346)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcHHHHH
Confidence 5556666666555544 22235556655 444555443
No 212
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.055 Score=51.12 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+-+.+.. .+--|++||++|.+.. ..-|.||..++. +..++++|..|+.++.+-|
T Consensus 90 vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLp 153 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE--------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLP 153 (319)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEecchhhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChH
Confidence 3455555444432 2246999999998742 345666666664 5677999999999999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFST 135 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~ 135 (362)
.+++ |+ ..+.|+.|+.++..+.+..
T Consensus 154 TI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 154 TIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 9999 98 5789999999887776643
No 213
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.042 Score=52.33 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+-+.+.. .+--|++||++|.+-. ..-|.||..++. +..++++|.+|+.++.+-|
T Consensus 90 idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 90 VDAVREVTEKLYEHARLGGAKVVWLPDAALLTD--------------AAANALLKTLEE--PPENTWFFLACREPARLLA 153 (334)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEcchHhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChH
Confidence 4455555544432 2346999999998742 345667776674 5678999999999999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFST 135 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~ 135 (362)
.+++ |+. .+.|+.|+.++....+..
T Consensus 154 TIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 154 TLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred HHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 9999 986 579999998887776643
No 214
>KOG1514|consensus
Probab=95.80 E-value=0.11 Score=53.14 Aligned_cols=152 Identities=19% Similarity=0.304 Sum_probs=93.5
Q ss_pred CcEEEEechhhh----------hhhcCch------HHHHHHHHHHH-HHcCCeEEEeccccccccccCCCCCCCcHHHHH
Q psy6770 13 TAFIRVVGSEFV----------QKYLGEG------PRMVRDVFRLA-KENSPAIIFIDEIDAIATKRFDAQTGADREVQR 75 (362)
Q Consensus 13 ~~~~~v~~s~l~----------~~~~ges------e~~l~~~F~~a-~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~ 75 (362)
..|++|++-.+. ..+.|+. -..|..-|... ....|+||+|||.|.|+..+ ..
T Consensus 458 f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----------Qd 526 (767)
T KOG1514|consen 458 FDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----------QD 526 (767)
T ss_pred ccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----------HH
Confidence 478888885543 3344443 22233333322 23458999999999998654 35
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccC--CCcce-eEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHH
Q psy6770 76 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLR--PGRLD-RKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYV 152 (362)
Q Consensus 76 ~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r--~gRf~-~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la 152 (362)
++-.|+++-. .++.+.+||+..|..+....-+-. ..|++ .+|.|.+.+.+|.++|+...+++...-.. +..+++
T Consensus 527 VlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~-~aielv 603 (767)
T KOG1514|consen 527 VLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFEN-KAIELV 603 (767)
T ss_pred HHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcch-hHHHHH
Confidence 6666665544 356788888888876643322221 12544 67899999999999999999987743322 445565
Q ss_pred hcCCCCcHhhH---HHHHHHHHHhhcccc
Q psy6770 153 ARPDRISGADI---NAICQEVIMATNRAD 178 (362)
Q Consensus 153 ~~t~g~s~~di---~~l~~~a~~~~~r~~ 178 (362)
.+--+-..+|. ..+|+.|...+....
T Consensus 604 arkVAavSGDaRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 604 ARKVAAVSGDARRALDICRRAAEIAEERN 632 (767)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhhhc
Confidence 55444444444 356677766655443
No 215
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.55 E-value=0.14 Score=48.47 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcC----CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKENS----PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~~----P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...|+.+-+.+.... --|++||++|.+.. ..-|.||.-++. +..++++|.+|+.++.+-|
T Consensus 95 idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 95 IEQVREISQKLALTPQYGIAQVVIVDPADAINR--------------AACNALLKTLEE--PSPGRYLWLISAQPARLPA 158 (319)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH--------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCch
Confidence 455666665554332 25999999998842 345566666664 5567888889999999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFST 135 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~ 135 (362)
.+++ |+ ..+.|+.|+.++-.+.+..
T Consensus 159 TIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 159 TIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred HHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 9999 98 6678999998877666653
No 216
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.53 E-value=0.024 Score=58.38 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=78.5
Q ss_pred CCeEEEEecCCC--CCCCccccCCCCcc---eeEEec--CCC-HHHHHHHHHHHh---ccCCCCCCCCH---HHHhh---
Q psy6770 222 GNLQVIMATNRA--DTLDPALLRPGRLD---RKIEFP--LPD-RRQKRLVFSTIT---AKMNLSDEVDL---EDYVA--- 284 (362)
Q Consensus 222 ~~v~vi~aTn~~--~~lD~a~~RpgRfd---~~i~~~--~P~-~~~r~~i~~~~l---~~~~~~~~~~~---~~la~--- 284 (362)
-++.+|+++|.. ..+||+++. ||+ ..++|+ .|+ .+.|..+.+.+. .+....+.++- ..|.+
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Confidence 367899999874 579999999 999 777664 354 455555444322 22211123332 22321
Q ss_pred -C-----CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCchHHHHHHHHhchHHH
Q psy6770 285 -R-----PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVRENRYIVLPKDF 343 (362)
Q Consensus 285 -~-----~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (362)
. .-..+..+|.++|++|...|..++...|+.+|+++|++..........++|.+-.+.+
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~~~~i~~~~l~~~~~~ 409 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTLEKQLADNYIERKKRY 409 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHHHHHHHHHhccCcccC
Confidence 1 1224568999999999877777788899999999999988776555556665544333
No 217
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.27 E-value=0.14 Score=52.80 Aligned_cols=156 Identities=11% Similarity=0.145 Sum_probs=85.5
Q ss_pred CcHHHHHHhhhCCcEEE-Eechhh----------------hhhhcCchHHHHHHHHHHHHH----------cCCeEEEec
Q psy6770 1 YLLCTSFDTELVTAFIR-VVGSEF----------------VQKYLGEGPRMVRDVFRLAKE----------NSPAIIFID 53 (362)
Q Consensus 1 slLakaiA~e~~~~~~~-v~~s~l----------------~~~~~gese~~l~~~F~~a~~----------~~P~II~iD 53 (362)
|.+++++|++++..+++ +++... +..+ ......++.+...+.. ....|||||
T Consensus 124 TTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILID 202 (637)
T TIGR00602 124 STTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVE 202 (637)
T ss_pred HHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEee
Confidence 46889999999987655 222110 1111 1223445566666542 246799999
Q ss_pred cccccccccCCCCCCCcHHHHHHHHHHHH-hccCCCCCCCeEEEEEcC-CCC--------------CCCccccCCCccee
Q psy6770 54 EIDAIATKRFDAQTGADREVQRILLELLN-QMDGFDQTTNVKVIMATN-RAD--------------TLDPALLRPGRLDR 117 (362)
Q Consensus 54 eiD~l~~~r~~~~~~~~~~~~~~l~~lL~-~ld~l~~~~~v~vi~tTn-~~~--------------~ld~al~r~gRf~~ 117 (362)
|++.++... ...+..+|. ... +.+.+.+|++++ .|. .+.++++...|. .
T Consensus 203 EiPn~~~r~-----------~~~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~ 267 (637)
T TIGR00602 203 DLPNQFYRD-----------TRALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-S 267 (637)
T ss_pred cchhhchhh-----------HHHHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-e
Confidence 999876321 122333333 111 233444444433 222 133566642233 4
Q ss_pred EEEccCCCHHHHHHHHHHHHccCCCC--------CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcc
Q psy6770 118 KIEFPLPDRRQKRLVFSTITAKMNLS--------DEVDLEDYVARPDRISGADINAICQEVIMATNR 176 (362)
Q Consensus 118 ~i~i~~P~~~~r~~il~~~~~~~~~~--------~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r 176 (362)
+|.|++....+....|+..+...... ....+..++. .+.+|++.++..-...+.+
T Consensus 268 ~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 268 NISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred EEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhc
Confidence 78999999988777777666543211 1123555555 5778888887765555443
No 218
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=95.27 E-value=0.075 Score=54.62 Aligned_cols=124 Identities=15% Similarity=0.251 Sum_probs=74.3
Q ss_pred CcHHHHHHhhhCC--cEEEEechhhhhhhcCch--HHHHHH---HHH--HHHHcCCeEEEeccccccccccCCCCCCCcH
Q psy6770 1 YLLCTSFDTELVT--AFIRVVGSEFVQKYLGEG--PRMVRD---VFR--LAKENSPAIIFIDEIDAIATKRFDAQTGADR 71 (362)
Q Consensus 1 slLakaiA~e~~~--~~~~v~~s~l~~~~~ges--e~~l~~---~F~--~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~ 71 (362)
|++|++|+..+.. +|+.+..+..-+..+|.- +..+.. .|+ ........++|+||++.+-+
T Consensus 30 s~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~----------- 98 (589)
T TIGR02031 30 TALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDD----------- 98 (589)
T ss_pred HHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCCH-----------
Confidence 5789999998764 688888643334444431 000100 000 00001126999999998742
Q ss_pred HHHHHHHHHHHhc----c--CC--CCCCCeEEEEEcCCCC---CCCccccCCCcceeEEEcc-CCCHHHHHHHHHHHH
Q psy6770 72 EVQRILLELLNQM----D--GF--DQTTNVKVIMATNRAD---TLDPALLRPGRLDRKIEFP-LPDRRQKRLVFSTIT 137 (362)
Q Consensus 72 ~~~~~l~~lL~~l----d--~l--~~~~~v~vi~tTn~~~---~ld~al~r~gRf~~~i~i~-~P~~~~r~~il~~~~ 137 (362)
.....+.+.+.+= . +. ....++.+|+|+|..+ .+.+++.. ||...+.+. +|+..+|.+|++..+
T Consensus 99 ~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 99 GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 2234444444321 1 11 1124678888888765 78899999 999988876 457788999998765
No 219
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.25 E-value=0.053 Score=53.77 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=61.4
Q ss_pred CcHHHHHHhhhCC--cEEEEec-----hhhhhhhcCchHHHH--HHHHHHHH-H-c-CCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTELVT--AFIRVVG-----SEFVQKYLGEGPRMV--RDVFRLAK-E-N-SPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~~~--~~~~v~~-----s~l~~~~~gese~~l--~~~F~~a~-~-~-~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|+||++|+...+. +|..+.+ +++++.. +-... ..-|.... . . ...++|+|||...-
T Consensus 53 T~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l---~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras--------- 120 (498)
T PRK13531 53 SLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL---SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG--------- 120 (498)
T ss_pred HHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH---HHhhhhhcCchhhhcCCccccccEEeecccccCC---------
Confidence 5799999987754 3443332 3333321 11111 11232111 1 0 22499999997432
Q ss_pred CcHHHHHHHHHHHHhccCC--------CCCCCeEEEEEcCCCC---CCCccccCCCcceeEEEccCCC-HHHHHHHHHHH
Q psy6770 69 ADREVQRILLELLNQMDGF--------DQTTNVKVIMATNRAD---TLDPALLRPGRLDRKIEFPLPD-RRQKRLVFSTI 136 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~ld~l--------~~~~~v~vi~tTn~~~---~ld~al~r~gRf~~~i~i~~P~-~~~r~~il~~~ 136 (362)
+ ...+.||..|..- ..-+..+++++||... ...+++.. ||-..+.+|.|+ .++-..++...
T Consensus 121 --p---~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 121 --P---AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred --H---HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 2 3445555555211 1112245555556321 12248888 999999999997 45557777653
No 220
>PRK06893 DNA replication initiation factor; Validated
Probab=95.19 E-value=0.11 Score=46.63 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=70.9
Q ss_pred hhhhhhhhhccCC-eEEEEecCCCCCCC---ccccCCCCcceeEEecCCCHHHHHHHHHHHhcc--CCCCCCCCHHHHhh
Q psy6770 211 ITAKMNFMLNIGN-LQVIMATNRADTLD---PALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK--MNLSDEVDLEDYVA 284 (362)
Q Consensus 211 ~l~~~~~~~~~~~-v~vi~aTn~~~~lD---~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~--~~~~~~~~~~~la~ 284 (362)
+...++...+.+. ++++.++..|..++ |.+....++...+.++.|+.+.|.++++..... +.+++++ ++.|++
T Consensus 113 l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~ 191 (229)
T PRK06893 113 IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLK 191 (229)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHH
Confidence 4444555555444 45566666687765 788773345678889999999999999987753 3344333 666777
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
..+| +.+.+..++..-...++. ...+||...+++.+
T Consensus 192 ~~~~-d~r~l~~~l~~l~~~~~~-~~~~it~~~v~~~L 227 (229)
T PRK06893 192 RLDR-DMHTLFDALDLLDKASLQ-AQRKLTIPFVKEIL 227 (229)
T ss_pred hccC-CHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHh
Confidence 6553 466666666655433333 33578888887765
No 221
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=95.19 E-value=0.056 Score=56.09 Aligned_cols=76 Identities=20% Similarity=0.393 Sum_probs=50.0
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhc------cCC--CCCCCeEEEEEcCCC-CCCCccccCCCcceeE
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM------DGF--DQTTNVKVIMATNRA-DTLDPALLRPGRLDRK 118 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l------d~l--~~~~~v~vi~tTn~~-~~ld~al~r~gRf~~~ 118 (362)
.|+||||++.+-. .....+.+++..= ++. ....++.+|+|+|-. ..+.+++.. ||+..
T Consensus 128 GiL~lDEi~~l~~-----------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~ 194 (633)
T TIGR02442 128 GILYIDEVNLLDD-----------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLC 194 (633)
T ss_pred CeEEeChhhhCCH-----------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceE
Confidence 6999999998742 1223333333210 111 112468889988843 368889999 99999
Q ss_pred EEccCCC-HHHHHHHHHHH
Q psy6770 119 IEFPLPD-RRQKRLVFSTI 136 (362)
Q Consensus 119 i~i~~P~-~~~r~~il~~~ 136 (362)
|.++.|. .+++.++++..
T Consensus 195 i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 195 VDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred EEccCCCchHHHHHHHHHH
Confidence 9998775 57777777653
No 222
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.17 E-value=0.058 Score=51.60 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=70.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.++..++... .++++|++||.++.+.+++.. |+ ..+.|+.|+..+...+++.++.+.+.. ++-.+..+++.
T Consensus 133 ~~~~Ll~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 133 AFNALLKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HHHHHHHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3566776665533 467788888999989998887 87 478999999999999999988765442 22235556766
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
+.| +...+.+.+..+...+ ...++.+++.+.+
T Consensus 208 ~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 554 5555555555554432 2346666665443
No 223
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.13 E-value=0.07 Score=47.23 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHcC-CeEEEeccccccc-cccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCC------
Q psy6770 31 GPRMVRDVFRLAKENS-PAIIFIDEIDAIA-TKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA------ 102 (362)
Q Consensus 31 se~~l~~~F~~a~~~~-P~II~iDeiD~l~-~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~------ 102 (362)
....+..+++...... +.||+|||+|.+. ... ... ..+..+...++......++.+|.+++..
T Consensus 102 ~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~---~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~ 172 (234)
T PF01637_consen 102 SFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDK---DFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEF 172 (234)
T ss_dssp -G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTH---HHHHHHHHHHHH----TTEEEEEEESSHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chH---HHHHHHHHHHhhccccCCceEEEECCchHHHHHh
Confidence 3566778888877654 4999999999998 221 122 3344444444433334455444444332
Q ss_pred CCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCC-C-CCcCCHHHHHhcCCCC
Q psy6770 103 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN-L-SDEVDLEDYVARPDRI 158 (362)
Q Consensus 103 ~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~-~-~~~~dl~~la~~t~g~ 158 (362)
..-...+.. |+.. +.++.-+.++..++++..+.... + .++.+++.+...+.|.
T Consensus 173 ~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 173 LDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp T-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-
T ss_pred hcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC
Confidence 122233444 8877 99999999999999999877651 1 1344566777666665
No 224
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.05 E-value=0.076 Score=50.62 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=70.7
Q ss_pred CCeEEEEecCCCC-CCCccccCCCCcceeEEecCCCH-HHHHHHHHHHhccC----------------------------
Q psy6770 222 GNLQVIMATNRAD-TLDPALLRPGRLDRKIEFPLPDR-RQKRLVFSTITAKM---------------------------- 271 (362)
Q Consensus 222 ~~v~vi~aTn~~~-~lD~a~~RpgRfd~~i~~~~P~~-~~r~~i~~~~l~~~---------------------------- 271 (362)
.++++|+++|-.+ .+.++++. ||..++.++.|.. ++|.+|++......
T Consensus 173 ~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~ 250 (337)
T TIGR02030 173 ARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLL 250 (337)
T ss_pred CCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHh
Confidence 4688888888655 68999999 9999999999976 88889888743210
Q ss_pred ---CCCCCC--CHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 272 ---NLSDEV--DLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 272 ---~~~~~~--~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
.+++.+ -+-.++..+..-|..--..+++-|.-.|+.+|++.|+.+|+..+..-+-+
T Consensus 251 ~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 251 PQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred ccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 011000 01122233332243444467788888888899999999999988665443
No 225
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.11 Score=50.28 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=73.7
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
++.++..|+... +++.+|++|+.++.+.+.+.. |+ ..+.|+.|+.++....++..+.+.+.. ++..++.++..+
T Consensus 136 ~naLLk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s 210 (363)
T PRK14961 136 FNALLKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHA 210 (363)
T ss_pred HHHHHHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 456666665533 466777788888889888766 77 578899999999999999888765432 233466677776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
.| +..++.+.+..+... +...++.+++.+.+.
T Consensus 211 ~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 211 HG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 65 666666776665432 356678887776554
No 226
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.02 E-value=0.093 Score=52.78 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=76.5
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.++..|+.. ..++++|.+|+.++.+++++.. |. ..+.|..++.++....++..+++.+.. ++-.++.|++.
T Consensus 144 a~naLLk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356677666643 3567888888999999999887 77 578899999999999999999765443 22346778887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
+.| +..++.+.+..+...+-.+ ...|+.+++.+.
T Consensus 219 s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~l 252 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMSAKS-DNIISPQVINQM 252 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHH
Confidence 776 7888888888775543211 224666665544
No 227
>PRK08116 hypothetical protein; Validated
Probab=94.84 E-value=0.051 Score=50.15 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=61.6
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhc----CchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYL----GEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREV 73 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~----gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~ 73 (362)
|.||.|||+++ |.+++.++.++++..+. +.+......+++... ...+|+|||+...- .....
T Consensus 128 ThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~---------~t~~~ 196 (268)
T PRK08116 128 TYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER---------DTEWA 196 (268)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC---------CCHHH
Confidence 57899999985 78999999988776432 111112223333332 34699999986421 11222
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEEcCCC-CC----CCccccCCCcc---eeEEEccCCCH
Q psy6770 74 QRILLELLNQMDGFDQTTNVKVIMATNRA-DT----LDPALLRPGRL---DRKIEFPLPDR 126 (362)
Q Consensus 74 ~~~l~~lL~~ld~l~~~~~v~vi~tTn~~-~~----ld~al~r~gRf---~~~i~i~~P~~ 126 (362)
...+..+++..- ..+..+|.|||.+ .. ++..+.. |+ ...|.++-|+.
T Consensus 197 ~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 197 REKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 333444444321 2334588888875 33 3555665 64 34566666664
No 228
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.79 E-value=0.15 Score=50.45 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=78.2
Q ss_pred hhhhhhhhhhhccCCeEEEEecCCCCCC---CccccCCCCcc--eeEEecCCCHHHHHHHHHHHhccC--CCCCCCCHHH
Q psy6770 209 STITAKMNFMLNIGNLQVIMATNRADTL---DPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKM--NLSDEVDLED 281 (362)
Q Consensus 209 ~~~l~~~~~~~~~~~v~vi~aTn~~~~l---D~a~~RpgRfd--~~i~~~~P~~~~r~~i~~~~l~~~--~~~~~~~~~~ 281 (362)
.++...++.+.+.+..+|+++++.|..+ ++.+.. ||. ..+.+..|+.+.|..|++...... .+++++ ++.
T Consensus 214 ~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~ 290 (440)
T PRK14088 214 TELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNF 290 (440)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHH
Confidence 3455556666666666666666677654 556666 775 466788999999999999988643 333333 666
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 282 la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
||+...| +..+|+.++.+-...+...+ .+++.....+++...
T Consensus 291 Ia~~~~~-~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~ 332 (440)
T PRK14088 291 VAENVDD-NLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDF 332 (440)
T ss_pred HHhcccc-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 7776554 67788888887765555544 678999998888876
No 229
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=0.15 Score=48.43 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCcc
Q psy6770 33 RMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 108 (362)
Q Consensus 33 ~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~a 108 (362)
..++.+-+.+.. ...-|++|||+|.+- ....+.||..++. +.+.+++|.+|+.+..+-|+
T Consensus 93 d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 93 DQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLLKFLEE--PSGGTTAILLTENKHQILPT 156 (329)
T ss_pred HHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHHHHhcC--CCCCceEEEEeCChHhCcHH
Confidence 445555544432 124699999998773 2345667777774 45677788888899999999
Q ss_pred ccCCCcceeEEEccCCCHHHHHHHHHH
Q psy6770 109 LLRPGRLDRKIEFPLPDRRQKRLVFST 135 (362)
Q Consensus 109 l~r~gRf~~~i~i~~P~~~~r~~il~~ 135 (362)
+++ |+ ..+++..|+.++-...++.
T Consensus 157 IrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 157 ILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 998 87 6789999998887666653
No 230
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=94.39 E-value=0.44 Score=42.91 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=64.6
Q ss_pred cHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHH
Q psy6770 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELL 81 (362)
Q Consensus 2 lLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL 81 (362)
-.+|.+|..+|.+++..++++-.+ .+.+.++|.-+...+ +.+.|||++.+-. ....++.+.+
T Consensus 47 etik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl~~-----------~vLS~i~~~i 108 (231)
T PF12774_consen 47 ETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRLSE-----------EVLSVISQQI 108 (231)
T ss_dssp HHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSSH-----------HHHHHHHHHH
T ss_pred hHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhhhH-----------HHHHHHHHHH
Confidence 368999999999999999987664 467889999998887 9999999998732 2223333333
Q ss_pred Hhc----cC-----------CCCCCCeEEEEEcC----CCCCCCccccCCCcceeEEEccCCCHHHHHHHH
Q psy6770 82 NQM----DG-----------FDQTTNVKVIMATN----RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 133 (362)
Q Consensus 82 ~~l----d~-----------l~~~~~v~vi~tTn----~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il 133 (362)
..+ .. +.-++..-++.|.| .-..+|+.++. +-+.+.+..||.....+++
T Consensus 109 ~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 109 QSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHHHHH
T ss_pred HHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHHHHH
Confidence 222 11 01122334455555 23478888874 4478899999987766655
No 231
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.38 E-value=0.26 Score=46.68 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=67.8
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCC------------CCCCCccccCCCc
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR------------ADTLDPALLRPGR 114 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~------------~~~ld~al~r~gR 114 (362)
|.|+||||++-| |-+.-.+++.-+ .+ .-.++ +|.+||+ |.-|+..++. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAl---Es--e~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRAL---ES--ELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHh---hc--ccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 999999999976 222334444444 21 22334 4555553 6677778887 7
Q ss_pred ceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhccc
Q psy6770 115 LDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMATNRA 177 (362)
Q Consensus 115 f~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~ 177 (362)
. ..|...+.+.++.++|++.-.....+. ++..++.|+....--|..---+++.-|...+.++
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r 415 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR 415 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh
Confidence 6 556666778999999999877765543 2234666666655555555555555444444433
No 232
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.34 E-value=0.2 Score=44.57 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=66.9
Q ss_pred hhhhhccCCeEEEEecCCCCCCC---ccccCCCCc--ceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCC
Q psy6770 215 MNFMLNIGNLQVIMATNRADTLD---PALLRPGRL--DRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDR 288 (362)
Q Consensus 215 ~~~~~~~~~v~vi~aTn~~~~lD---~a~~RpgRf--d~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g 288 (362)
++.....+..+|+.++..+..++ +.+.. |+ ...+.++.|+.+++..+++.+..+..+. ++--+..|++. -+
T Consensus 116 l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~ 192 (226)
T TIGR03420 116 YNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GS 192 (226)
T ss_pred HHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-cc
Confidence 33333333445554444454443 66666 66 4789999999999999999887654332 22235666763 55
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 289 ISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 289 ~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
-+..++.+++.++...+...+ ..|+.+.+.+.+
T Consensus 193 gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 193 RDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 677899999988776555544 568887776654
No 233
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.31 E-value=0.12 Score=47.96 Aligned_cols=131 Identities=18% Similarity=0.314 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC--CCCccccC
Q psy6770 34 MVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD--TLDPALLR 111 (362)
Q Consensus 34 ~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~--~ld~al~r 111 (362)
.-..+....+..++-+|+|||++.++..+ . .-.+.+..+|..+.. .-.-+++.+||-.-.. .-|+-+.+
T Consensus 133 ~~~~~~~llr~~~vrmLIIDE~H~lLaGs-----~---~~qr~~Ln~LK~L~N-eL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 133 LEQQVLRLLRRLGVRMLIIDEFHNLLAGS-----Y---RKQREFLNALKFLGN-ELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred HHHHHHHHHHHcCCcEEEeechHHHhccc-----H---HHHHHHHHHHHHHhh-ccCCCeEEeccHHHHHHhccCHHHHh
Confidence 34445677888899999999999986432 1 112333333333321 1123566666644333 33777777
Q ss_pred CCcceeEEEccCCC-HHHHHHHHHHHHccCCCCC--cC---CH-HHHHhcCCCCcHhhHHHHHHHHHHhhccc
Q psy6770 112 PGRLDRKIEFPLPD-RRQKRLVFSTITAKMNLSD--EV---DL-EDYVARPDRISGADINAICQEVIMATNRA 177 (362)
Q Consensus 112 ~gRf~~~i~i~~P~-~~~r~~il~~~~~~~~~~~--~~---dl-~~la~~t~g~s~~di~~l~~~a~~~~~r~ 177 (362)
||+ .+.+|... .++-..++..+-...++.. .. ++ ..+...+.|.+| ++..++..|+..|.+.
T Consensus 204 --RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 204 --RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred --ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 995 45666654 3445556666665555442 22 22 344556677655 6677777777766554
No 234
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.28 E-value=0.25 Score=48.58 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=63.9
Q ss_pred cCCeEEEEecC--CCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC-----CCCCCCCHHHHhhCCCCCCHHH
Q psy6770 221 IGNLQVIMATN--RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM-----NLSDEVDLEDYVARPDRISGAD 293 (362)
Q Consensus 221 ~~~v~vi~aTn--~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~-----~~~~~~~~~~la~~~~g~sgad 293 (362)
.+.+++|++|+ ....++++++. |+ ..+.|..|+.++...+++..+... .+. +-.++.+++.+.| ....
T Consensus 118 ~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~ 192 (413)
T PRK13342 118 DGTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARR 192 (413)
T ss_pred cCcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHH
Confidence 35677777653 34589999999 98 778899999999999999887542 222 1224566666533 3344
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 294 INAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 294 i~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
+.+++..+... ...|+.+++...+....
T Consensus 193 aln~Le~~~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 193 ALNLLELAALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHHHHHHHHc-----cCCCCHHHHHHHHhhhh
Confidence 44444444332 45789999988887643
No 235
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.26 E-value=0.085 Score=50.35 Aligned_cols=77 Identities=23% Similarity=0.337 Sum_probs=48.1
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcC------------CCCCCCccccCCCc
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN------------RADTLDPALLRPGR 114 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn------------~~~~ld~al~r~gR 114 (362)
|.|+||||+|-| |-+.-..++..+. ..-.-++|.+|| .|.-+|..|+. |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralE------s~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALE------SELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHT------STT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhc------CCCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 899999999976 3344455666652 223345666666 46677888888 8
Q ss_pred ceeEEEccCCCHHHHHHHHHHHHccCCCC
Q psy6770 115 LDRKIEFPLPDRRQKRLVFSTITAKMNLS 143 (362)
Q Consensus 115 f~~~i~i~~P~~~~r~~il~~~~~~~~~~ 143 (362)
+ ..|...+.+.++..+|++..++..++.
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 7 677888889999999999988876543
No 236
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.25 E-value=0.12 Score=49.12 Aligned_cols=77 Identities=19% Similarity=0.403 Sum_probs=53.5
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhc------cCC--CCCCCeEEEEEcCCCC-CCCccccCCCcceeE
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM------DGF--DQTTNVKVIMATNRAD-TLDPALLRPGRLDRK 118 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l------d~l--~~~~~v~vi~tTn~~~-~ld~al~r~gRf~~~ 118 (362)
.++|+||++.+-+ .....+.+.+.+= ++. ....++++++|+|-.+ .+++++.. ||...
T Consensus 130 GiL~lDEInrl~~-----------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~ 196 (334)
T PRK13407 130 GYLYIDEVNLLED-----------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLS 196 (334)
T ss_pred CeEEecChHhCCH-----------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceE
Confidence 5899999998632 2233444444321 111 1235688888888544 58899999 99999
Q ss_pred EEccCCCH-HHHHHHHHHHH
Q psy6770 119 IEFPLPDR-RQKRLVFSTIT 137 (362)
Q Consensus 119 i~i~~P~~-~~r~~il~~~~ 137 (362)
+.++.|.. ++|.++++...
T Consensus 197 v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 197 VEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred EEcCCCCcHHHHHHHHHHhh
Confidence 99998876 89999998754
No 237
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.13 E-value=0.15 Score=50.89 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=69.0
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.++..|+... +++++|++||.|..+++++.. |+. .+.|..|+.++...+++..+...++. ++-.++.|++.+
T Consensus 134 ~~~LLk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s 208 (472)
T PRK14962 134 FNALLKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208 (472)
T ss_pred HHHHHHHHHhCC--CcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 455666555433 467788888888999999998 884 78899999999888888887654332 222366777755
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~ 324 (362)
.| +..++-+.+..+.. ..+ ..|+.+++.+++..
T Consensus 209 ~G-dlR~aln~Le~l~~---~~~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 209 SG-GLRDALTMLEQVWK---FSE-GKITLETVHEALGL 241 (472)
T ss_pred CC-CHHHHHHHHHHHHH---hcC-CCCCHHHHHHHHcC
Confidence 43 33333344433222 122 34888888777643
No 238
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.12 E-value=0.44 Score=45.04 Aligned_cols=105 Identities=16% Similarity=0.296 Sum_probs=69.5
Q ss_pred HHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccc
Q psy6770 34 MVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPAL 109 (362)
Q Consensus 34 ~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al 109 (362)
.++.+-+.+.. ...-|++||++|.+-. ..-+.||..|+.. . +.++|..|+.++.+-|.+
T Consensus 108 ~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~--------------~aaNaLLK~LEEP--p-~~~fILi~~~~~~Ll~TI 170 (314)
T PRK07399 108 QIREIKRFLSRPPLEAPRKVVVIEDAETMNE--------------AAANALLKTLEEP--G-NGTLILIAPSPESLLPTI 170 (314)
T ss_pred HHHHHHHHHccCcccCCceEEEEEchhhcCH--------------HHHHHHHHHHhCC--C-CCeEEEEECChHhCcHHH
Confidence 45666555543 2357999999997732 3355666666643 2 556777888999999999
Q ss_pred cCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 110 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 110 ~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
++ |+ ..+.|+.|+.++..+++......... +.+...++....|--+
T Consensus 171 ~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~a~Gs~~ 216 (314)
T PRK07399 171 VS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLALAQGSPG 216 (314)
T ss_pred Hh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHHHcCCCHH
Confidence 99 87 78899999999998888865432111 1123556655554433
No 239
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.11 E-value=0.14 Score=43.43 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=56.4
Q ss_pred hhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhcc
Q psy6770 10 ELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMD 85 (362)
Q Consensus 10 e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 85 (362)
...-+++.+++..-.. . -+...++.+.+.+... ..-|++||++|.+-. ..-+.||..|+
T Consensus 65 ~~~~d~~~~~~~~~~~-~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~--------------~a~NaLLK~LE 127 (162)
T PF13177_consen 65 GNHPDFIIIKPDKKKK-S--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE--------------EAQNALLKTLE 127 (162)
T ss_dssp T-CTTEEEEETTTSSS-S--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H--------------HHHHHHHHHHH
T ss_pred ccCcceEEEecccccc-h--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH--------------HHHHHHHHHhc
Confidence 3345666666543311 1 1235566665555332 356999999998742 44566666666
Q ss_pred CCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccC
Q psy6770 86 GFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 123 (362)
Q Consensus 86 ~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~ 123 (362)
. ...++.+|.+|+.++.|-|.+++ |+ ..+.|+.
T Consensus 128 e--pp~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 128 E--PPENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp S--TTTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred C--CCCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 3 55789999999999999999999 87 4455543
No 240
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.07 E-value=0.42 Score=47.41 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=70.9
Q ss_pred hhhhhhhhhhccCCeEEEEecCCCC---CCCccccCCCCcc--eeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHh
Q psy6770 210 TITAKMNFMLNIGNLQVIMATNRAD---TLDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYV 283 (362)
Q Consensus 210 ~~l~~~~~~~~~~~v~vi~aTn~~~---~lD~a~~RpgRfd--~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la 283 (362)
++...++.+...+..+|+.+++.|. .+++.+.. ||. ..+.+..|+.++|..|++.......+. ++--++.|+
T Consensus 223 elf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la 300 (445)
T PRK12422 223 EFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLI 300 (445)
T ss_pred HHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444444444445555555555564 46788888 996 667777799999999999988765432 111244466
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHH
Q psy6770 284 ARPDRISGADINAICQEAGMHAVRE--NRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 284 ~~~~g~sgadi~~~~~~a~~~a~~~--~~~~v~~~~~~~a~~~~ 325 (362)
.... -+..++...+...+...+.. ...+++.+++.+++...
T Consensus 301 ~~~~-~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 301 EALS-SNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HhcC-CCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 5433 24556666666553221111 23678999999999876
No 241
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.07 E-value=0.37 Score=44.04 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=66.9
Q ss_pred CcceeEEecCCCHHHHHHHHHHHhccCCCC-----CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy6770 245 RLDRKIEFPLPDRRQKRLVFSTITAKMNLS-----DEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319 (362)
Q Consensus 245 Rfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-----~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~ 319 (362)
|+...++++..+.++-.+++...+...+.. ++-.++.|++.|.|..+. |..+|..+...|..++...|+.+++.
T Consensus 182 r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~~~~i~~~~v~ 260 (269)
T TIGR03015 182 RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEEKREIGGEEVR 260 (269)
T ss_pred heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 788889999999999999998888644321 223477788999999766 99999999999999999999999999
Q ss_pred HHHHHHh
Q psy6770 320 KGYKKCA 326 (362)
Q Consensus 320 ~a~~~~~ 326 (362)
.++..+.
T Consensus 261 ~~~~~~~ 267 (269)
T TIGR03015 261 EVIAEID 267 (269)
T ss_pred HHHHHhh
Confidence 9988753
No 242
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.06 E-value=0.21 Score=51.10 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=71.0
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.|+..|+.. ..++++|.+|+.|+.|.+.++. |.. .+.|..|+..+-...++.++.+.++. ++-.+..+++.
T Consensus 135 a~naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~ 209 (559)
T PRK05563 135 AFNALLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARA 209 (559)
T ss_pred HHHHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 366777766654 3467788888889999999887 775 57788899988888888888765543 22346677877
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~ 319 (362)
+.| +..+..+.+..+.... ...|+.+++.
T Consensus 210 s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~ 238 (559)
T PRK05563 210 AEG-GMRDALSILDQAISFG----DGKVTYEDAL 238 (559)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCCCHHHHH
Confidence 766 6777777776664432 2345555443
No 243
>PRK08727 hypothetical protein; Validated
Probab=94.04 E-value=0.33 Score=43.70 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=64.6
Q ss_pred hhhhhccCCeEEEEecCCCCCC---CccccCCCCc--ceeEEecCCCHHHHHHHHHHHhcc--CCCCCCCCHHHHhhCCC
Q psy6770 215 MNFMLNIGNLQVIMATNRADTL---DPALLRPGRL--DRKIEFPLPDRRQKRLVFSTITAK--MNLSDEVDLEDYVARPD 287 (362)
Q Consensus 215 ~~~~~~~~~v~vi~aTn~~~~l---D~a~~RpgRf--d~~i~~~~P~~~~r~~i~~~~l~~--~~~~~~~~~~~la~~~~ 287 (362)
++...+.+.-+++.+.+.|..+ +|++.. || -..+.++.|+.+++..+++.+... +.++. -.++.|++.+.
T Consensus 119 ~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~-e~~~~La~~~~ 195 (233)
T PRK08727 119 HNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDE-AAIDWLLTHGE 195 (233)
T ss_pred HHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhCC
Confidence 3444444433555555567765 789988 97 556778889999999999986643 33332 23667787755
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy6770 288 RISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324 (362)
Q Consensus 288 g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~ 324 (362)
| +...+.+++......+...+ ..+|...+.+.+..
T Consensus 196 r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 196 R-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred C-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhh
Confidence 2 22233333544433343333 47888888877754
No 244
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.96 E-value=0.34 Score=45.13 Aligned_cols=82 Identities=13% Similarity=0.304 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+-+.+... ..-|++||++|.+.. ..-|.||..++. +..++++|.+|+.++.+-|
T Consensus 86 idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~--------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLp 149 (290)
T PRK07276 86 TDTIRELVKNFSQSGYEGKQQVFIIKDADKMHV--------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLP 149 (290)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeehhhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCch
Confidence 45566655544332 236999999998742 345666666664 4567899999999999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVF 133 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il 133 (362)
.+++ |+ ..+.|+. +.++-.+++
T Consensus 150 TI~S--Rc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 150 TIKS--RT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred HHHH--cc-eeeeCCC-cHHHHHHHH
Confidence 9999 98 5677765 444444444
No 245
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.90 E-value=0.26 Score=48.95 Aligned_cols=116 Identities=9% Similarity=0.105 Sum_probs=78.1
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCC---CCccccCCCCccee--EEecCCCHHHHHHHHHHHhccCCCCCCC---CH
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADT---LDPALLRPGRLDRK--IEFPLPDRRQKRLVFSTITAKMNLSDEV---DL 279 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~---lD~a~~RpgRfd~~--i~~~~P~~~~r~~i~~~~l~~~~~~~~~---~~ 279 (362)
..++...++...+.+.-+|+.+...|.. +++.+.. ||... +.+..|+.++|.+|++..+....+...+ -+
T Consensus 225 ~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl 302 (450)
T PRK14087 225 NEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAI 302 (450)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 3445555666666555455554444544 4677777 88644 4466789999999999999764321122 25
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Q psy6770 280 EDYVARPDRISGADINAICQEAGMHAVREN-RYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 280 ~~la~~~~g~sgadi~~~~~~a~~~a~~~~-~~~v~~~~~~~a~~~~~ 326 (362)
+.|+..+.| +...+..+|.+....+.... ..+++.+.+.+++..+.
T Consensus 303 ~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 303 NFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 556666554 68889999998876666653 36899999999998764
No 246
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.83 E-value=0.22 Score=47.47 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=67.9
Q ss_pred CCeEEEEecCCCC-CCCccccCCCCcceeEEecCCCH-HHHHHHHHHHhccCC--C--------CC--------------
Q psy6770 222 GNLQVIMATNRAD-TLDPALLRPGRLDRKIEFPLPDR-RQKRLVFSTITAKMN--L--------SD-------------- 275 (362)
Q Consensus 222 ~~v~vi~aTn~~~-~lD~a~~RpgRfd~~i~~~~P~~-~~r~~i~~~~l~~~~--~--------~~-------------- 275 (362)
.++++++++|-.+ .++++++. ||..++.++.|.. ++|.+|++.....-. . ..
T Consensus 170 ~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~ 247 (334)
T PRK13407 170 ARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARL 247 (334)
T ss_pred CCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhc
Confidence 4688888888644 68999999 9999999999977 999999987543110 0 00
Q ss_pred -C--CC---HH---HHhhC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 276 -E--VD---LE---DYVAR--PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 276 -~--~~---~~---~la~~--~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
. ++ ++ .++.. ++|. =|+|. +++.|.-.|+.+|++.|+.+|+..+..
T Consensus 248 ~~V~v~~~~~~yi~~l~~~~~~~s~-Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~ 304 (334)
T PRK13407 248 PQLKTPNTVLHDCAALCIALGSDGL-RGELT-LLRAARALAAFEGAEAVGRSHLRSVAT 304 (334)
T ss_pred CCcccCHHHHHHHHHHHHHHCCCCc-hHHHH-HHHHHHHHHHHcCCCeeCHHHHHHHHH
Confidence 0 00 11 12222 2333 34455 888899999999999999999977653
No 247
>PRK09087 hypothetical protein; Validated
Probab=93.70 E-value=0.4 Score=43.00 Aligned_cols=112 Identities=16% Similarity=0.079 Sum_probs=74.2
Q ss_pred hhhhhhhhhhccCCeEEEEecCCCCCC---CccccCCCCcc--eeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHh
Q psy6770 210 TITAKMNFMLNIGNLQVIMATNRADTL---DPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYV 283 (362)
Q Consensus 210 ~~l~~~~~~~~~~~v~vi~aTn~~~~l---D~a~~RpgRfd--~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la 283 (362)
++...++...+.+..+||+++..|..+ .|++.- ||. ..+.+..|+.+.|.++++.++....+. ++--++.|+
T Consensus 105 ~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La 182 (226)
T PRK09087 105 GLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLV 182 (226)
T ss_pred HHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 355666677777777888887666644 566666 887 677788899999999999999764432 222366677
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 284 ARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 284 ~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
+... =+-+.+..++..-...+...+ .++|...++++++.+
T Consensus 183 ~~~~-r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 183 SRME-RSLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHhh-hhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 7654 233344444445544454444 668988888888754
No 248
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.65 E-value=0.17 Score=45.96 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=54.2
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCc---hHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGE---GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~ge---se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|.|+.+||+++ |..++.++.++++....+. +......+++... ...+|+|||++.... .....
T Consensus 113 ThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~---------s~~~~ 181 (244)
T PRK07952 113 NHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE---------SRYEK 181 (244)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC---------CHHHH
Confidence 56899999988 7888999998887643321 1112234444433 568999999987531 12234
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEcCCC
Q psy6770 75 RILLELLNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 75 ~~l~~lL~~ld~l~~~~~v~vi~tTn~~ 102 (362)
.++.++++.- ..++-.+|.|||..
T Consensus 182 ~~l~~Ii~~R----y~~~~~tiitSNl~ 205 (244)
T PRK07952 182 VIINQIVDRR----SSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHHHHH----HhCCCCEEEeCCCC
Confidence 5666666541 12345588888864
No 249
>PF13173 AAA_14: AAA domain
Probab=93.54 E-value=0.45 Score=38.38 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=58.3
Q ss_pred CcHHHHHHhhhC--CcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHH
Q psy6770 1 YLLCTSFDTELV--TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILL 78 (362)
Q Consensus 1 slLakaiA~e~~--~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~ 78 (362)
|.|++.++.++. -.++.++..+.......... +.+.|......++.+|||||+..+- .....+.
T Consensus 16 Ttll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------------~~~~~lk 81 (128)
T PF13173_consen 16 TTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------------DWEDALK 81 (128)
T ss_pred HHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------------cHHHHHH
Confidence 567888888876 77777777665443211111 2233322222367999999999761 1234555
Q ss_pred HHHHhccCCCCCCCeEEEEEcCCCCCCCc--cccCCCcceeEEEccCCCHHH
Q psy6770 79 ELLNQMDGFDQTTNVKVIMATNRADTLDP--ALLRPGRLDRKIEFPLPDRRQ 128 (362)
Q Consensus 79 ~lL~~ld~l~~~~~v~vi~tTn~~~~ld~--al~r~gRf~~~i~i~~P~~~~ 128 (362)
.+.+. ..++-++.|++....+.. +-.=+||.. .+++.+.+..|
T Consensus 82 ~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 82 FLVDN------GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred HHHHh------ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 55542 134445555444433321 122235764 67777777654
No 250
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.41 E-value=0.63 Score=41.50 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=69.0
Q ss_pred hhhhhhhhhccCCeEEEEecCCCC---CCCccccCCCCc--ceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhh
Q psy6770 211 ITAKMNFMLNIGNLQVIMATNRAD---TLDPALLRPGRL--DRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVA 284 (362)
Q Consensus 211 ~l~~~~~~~~~~~v~vi~aTn~~~---~lD~a~~RpgRf--d~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~ 284 (362)
+..-++...+.+..+++.+++.+. .+.+.+.. || ...+.++.|+.+++..+++.+..+..+. ++--++.|++
T Consensus 110 L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~ 187 (227)
T PRK08903 110 LFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLT 187 (227)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444455555555544555554432 24455554 76 5789999999988999998877654433 2223555666
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
. -+=+..++..++..-...+...+ ..|+...+.+.+.
T Consensus 188 ~-~~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 188 H-FRRDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred h-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 3 33456777778877555554444 6889888888765
No 251
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.35 E-value=0.22 Score=47.52 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=54.1
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHh----c--cCC--CCCCCeEEEEEcCCCC-CCCccccCCCccee
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ----M--DGF--DQTTNVKVIMATNRAD-TLDPALLRPGRLDR 117 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~----l--d~l--~~~~~v~vi~tTn~~~-~ld~al~r~gRf~~ 117 (362)
..++|+||++.+-+ .....+.+.+.+ + ++. ....++++++|+|-.+ .+++++.. ||..
T Consensus 132 ~GvL~lDEi~~L~~-----------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l 198 (337)
T TIGR02030 132 RGILYIDEVNLLED-----------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGL 198 (337)
T ss_pred CCEEEecChHhCCH-----------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcce
Confidence 47999999998632 223444444432 1 111 1234678888887544 68999999 9999
Q ss_pred EEEccCCCH-HHHHHHHHHHH
Q psy6770 118 KIEFPLPDR-RQKRLVFSTIT 137 (362)
Q Consensus 118 ~i~i~~P~~-~~r~~il~~~~ 137 (362)
.+.++.|.. ++|.+|++...
T Consensus 199 ~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 199 HAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred EEECCCCCCHHHHHHHHHhhh
Confidence 999999975 88999998743
No 252
>PRK04195 replication factor C large subunit; Provisional
Probab=93.27 E-value=0.36 Score=48.50 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=65.4
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHH
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQE 300 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~ 300 (362)
.+..+|+++|.++.+++..+| +.-..|.|+.|+..+...+++.++.+.++. ++-.++.|++.+ ++|++.+++.
T Consensus 129 ~~~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ain~ 202 (482)
T PRK04195 129 AKQPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRSAIND 202 (482)
T ss_pred CCCCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHH
Confidence 345677788999988886667 566789999999999999999988665443 223466777654 5588888776
Q ss_pred HHHHHHHhcCCCCCHHHHHHHH
Q psy6770 301 AGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 301 a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
.... ..+...++.+++....
T Consensus 203 Lq~~--a~~~~~it~~~v~~~~ 222 (482)
T PRK04195 203 LQAI--AEGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHH--hcCCCCCcHHHHHHhh
Confidence 6553 2344566777665443
No 253
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=93.26 E-value=0.42 Score=43.15 Aligned_cols=111 Identities=11% Similarity=0.086 Sum_probs=73.0
Q ss_pred hhCCcEEEEechhhhhhh-cCchHHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhc
Q psy6770 10 ELVTAFIRVVGSEFVQKY-LGEGPRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM 84 (362)
Q Consensus 10 e~~~~~~~v~~s~l~~~~-~gese~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l 84 (362)
...-+++.+.+..-..+. -.-+...+|++-+.+.. ..--|++|+++|.+.. ...+.||.-+
T Consensus 48 ~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~--------------~AANALLKtL 113 (263)
T PRK06581 48 ENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNL--------------NAANSCLKIL 113 (263)
T ss_pred CCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCH--------------HHHHHHHHhh
Confidence 344466666553211000 01134556665554432 2346999999998842 3456666666
Q ss_pred cCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHcc
Q psy6770 85 DGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 85 d~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~ 139 (362)
+. +..++++|..|+.+..+.|.+++ |+ ..+.++.|+...-.+.+...+..
T Consensus 114 EE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~~~~~~~p 163 (263)
T PRK06581 114 ED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNELYSQFIQP 163 (263)
T ss_pred cC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHHHHHhccc
Confidence 64 56678888888899999999999 88 67899999987777777666543
No 254
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.12 E-value=0.37 Score=46.09 Aligned_cols=104 Identities=19% Similarity=0.151 Sum_probs=68.9
Q ss_pred CCeEEEEecCCCC-CCCccccCCCCcceeEEecCCC-HHHHHHHHHHHhccC--CCC--------C--------------
Q psy6770 222 GNLQVIMATNRAD-TLDPALLRPGRLDRKIEFPLPD-RRQKRLVFSTITAKM--NLS--------D-------------- 275 (362)
Q Consensus 222 ~~v~vi~aTn~~~-~lD~a~~RpgRfd~~i~~~~P~-~~~r~~i~~~~l~~~--~~~--------~-------------- 275 (362)
.++++|++.|-.+ .+.++++. ||..++.++.|. .+.|.+|++...... +.. .
T Consensus 186 ~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~ 263 (350)
T CHL00081 186 ARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLL 263 (350)
T ss_pred CCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhc
Confidence 4688888888655 69999999 999999999997 599999988754211 000 0
Q ss_pred -CCC--------HHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 276 -EVD--------LEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 276 -~~~--------~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
.+. +-.++..+.--|..---.+++.|.-.|+.+|++.|+++|+..+..-+-+
T Consensus 264 ~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 264 PKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred CCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 010 1112222222233333356677777778889999999999988765443
No 255
>KOG2680|consensus
Probab=93.07 E-value=0.65 Score=43.09 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=68.9
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEE---------cC--CCCCCCccccCCCc
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA---------TN--RADTLDPALLRPGR 114 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~t---------Tn--~~~~ld~al~r~gR 114 (362)
-|.|+||||++-| +-+.-.++|.-|.. .-.++++++| || .|.-+|-.++. |
T Consensus 288 vpGVLFIDEvHML-----------DIEcFsFlNrAlE~-----d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----------DIECFSFLNRALEN-----DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred ccceEEEeeehhh-----------hhHHHHHHHHHhhh-----ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 3999999999976 22334555555531 1234444332 22 25567777776 6
Q ss_pred ceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccc
Q psy6770 115 LDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178 (362)
Q Consensus 115 f~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~ 178 (362)
. ..|...+.+.++...|++..+....+. ++..++.|.......+..---.++..|.+.|.+++
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk 413 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK 413 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 5 456666778899999999877665443 12234444444455555556667777777776654
No 256
>KOG1051|consensus
Probab=93.03 E-value=0.32 Score=51.69 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=79.4
Q ss_pred CCcEEEEechhhh--hhhcCchHHHHHHHHHHHHHc-CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCC
Q psy6770 12 VTAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKEN-SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 88 (362)
Q Consensus 12 ~~~~~~v~~s~l~--~~~~gese~~l~~~F~~a~~~-~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~ 88 (362)
+..++.++...+. .++-|+.+.+++.+.+.+... ...|+||||++.+.+...+ .+ .......+..+|
T Consensus 243 ~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--~~-~~d~~nlLkp~L------- 312 (898)
T KOG1051|consen 243 DKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--YG-AIDAANLLKPLL------- 312 (898)
T ss_pred ccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc--ch-HHHHHHhhHHHH-------
Confidence 4566777776444 457789999999999999854 5578899999999977643 11 112234444444
Q ss_pred CCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHcc
Q psy6770 89 QTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 89 ~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~ 139 (362)
..+.+-+|+||+.-. .-||++-| ||+. +.++.|+.+.-..|++.+-..
T Consensus 313 ~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 313 ARGGLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred hcCCeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhhhh
Confidence 234488999877432 44999999 9965 578889877766677665554
No 257
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.89 E-value=0.36 Score=45.65 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=66.8
Q ss_pred hhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCC
Q psy6770 210 TITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDR 288 (362)
Q Consensus 210 ~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g 288 (362)
.+...|+.... ...+|.+|+.+..+.+.+.. |. ..+.+..|+.++...+++.++.+.++. ++..++.|++.+
T Consensus 144 ~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-- 216 (337)
T PRK12402 144 ALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-- 216 (337)
T ss_pred HHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--
Confidence 34444444332 34456666677777777766 75 578899999999999999988765443 233466677654
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy6770 289 ISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324 (362)
Q Consensus 289 ~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~ 324 (362)
|+|+..+++.....+. +...|+.+++.+.+..
T Consensus 217 --~gdlr~l~~~l~~~~~--~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 217 --GGDLRKAILTLQTAAL--AAGEITMEAAYEALGD 248 (337)
T ss_pred --CCCHHHHHHHHHHHHH--cCCCCCHHHHHHHhCC
Confidence 4567776665554442 2346888888776554
No 258
>PF14516 AAA_35: AAA-like domain
Probab=92.78 E-value=1.1 Score=42.68 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=60.1
Q ss_pred HHHHHHHHHH---HHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccc
Q psy6770 33 RMVRDVFRLA---KENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPAL 109 (362)
Q Consensus 33 ~~l~~~F~~a---~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al 109 (362)
......|+.. ...+|-||+|||+|.++... ......-..+..+-.+=..-....+..++.+...+..+....
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~ 185 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDI 185 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCC
Confidence 3445555532 23579999999999998532 111111122222221111001112233333222222222222
Q ss_pred cCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHHHH
Q psy6770 110 LRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEV 170 (362)
Q Consensus 110 ~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~~a 170 (362)
.+ .-|. ..|+++.-+.++-..+++.+-.. .... .++.+...|.|. |.=+..+|...
T Consensus 186 ~~-SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~-~~~~l~~~tgGh-P~Lv~~~~~~l 243 (331)
T PF14516_consen 186 NQ-SPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQE-QLEQLMDWTGGH-PYLVQKACYLL 243 (331)
T ss_pred CC-CCcccccceeCCCCCHHHHHHHHHhhhcc--CCHH-HHHHHHHHHCCC-HHHHHHHHHHH
Confidence 11 1343 45666666788888888776433 2222 377777777773 34444555443
No 259
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.67 E-value=1.2 Score=45.85 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=76.1
Q ss_pred hhhhhhhhhhccCCeEEEEecCC-CC---CCCccccCCCCcceeE--EecCCCHHHHHHHHHHHhccCCCC--CCCCHHH
Q psy6770 210 TITAKMNFMLNIGNLQVIMATNR-AD---TLDPALLRPGRLDRKI--EFPLPDRRQKRLVFSTITAKMNLS--DEVDLED 281 (362)
Q Consensus 210 ~~l~~~~~~~~~~~v~vi~aTn~-~~---~lD~a~~RpgRfd~~i--~~~~P~~~~r~~i~~~~l~~~~~~--~~~~~~~ 281 (362)
++...++.+.+.++-+|| ++|. |. .+++.|.. ||...+ .+..||.+.|.+|++.......+. .++ ++-
T Consensus 398 eLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~y 473 (617)
T PRK14086 398 EFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEF 473 (617)
T ss_pred HHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHH
Confidence 344555555555544444 5555 33 56888888 996655 677799999999999988755443 332 555
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 282 la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
|++...+ +-.+|+.++.+-...+...+ ..|+....+..++.+.+
T Consensus 474 La~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 474 IASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 6665442 57788888887765555544 67899999999887755
No 260
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.65 E-value=1.1 Score=46.59 Aligned_cols=113 Identities=23% Similarity=0.401 Sum_probs=59.3
Q ss_pred cHHHHHHhhhC---CcEEEEechhhh-----hhhcCch----HHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCC
Q psy6770 2 LLCTSFDTELV---TAFIRVVGSEFV-----QKYLGEG----PRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGA 69 (362)
Q Consensus 2 lLakaiA~e~~---~~~~~v~~s~l~-----~~~~ges----e~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~ 69 (362)
++|++|-+... .+|+.|+|..+- +.++|.. ..--...|+.| ....|||||||.+-..
T Consensus 363 ~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~-------- 431 (638)
T PRK11388 363 LLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPE-------- 431 (638)
T ss_pred HHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHH--------
Confidence 68899877654 699999997652 2233311 00000012222 3578999999987422
Q ss_pred cHHHHHHHHHHHHhc--cCCCCC----CCeEEEEEcCCCCCCCccccCCCcce-------eEEEccCCCHHHHHH
Q psy6770 70 DREVQRILLELLNQM--DGFDQT----TNVKVIMATNRADTLDPALLRPGRLD-------RKIEFPLPDRRQKRL 131 (362)
Q Consensus 70 ~~~~~~~l~~lL~~l--d~l~~~----~~v~vi~tTn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~ 131 (362)
....+..+|+.= ..+... -++-+|+||+..- . .+...|+|. ..+.+.+|...+|.+
T Consensus 432 ---~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~ 500 (638)
T PRK11388 432 ---LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADL--A-MLVEQNRFSRQLYYALHAFEITIPPLRMRRE 500 (638)
T ss_pred ---HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCH--H-HHHhcCCChHHHhhhhceeEEeCCChhhhhh
Confidence 233444444321 111111 1466888888542 1 222334552 245677777777643
No 261
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.52 E-value=0.52 Score=50.09 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=68.3
Q ss_pred cCCeEEEEecCC---CCCCCccccCCCCcce-eEEecCCCHHHHHHHHHHHhccCC-CCCCCCHHHHhhCCCCCCHHHHH
Q psy6770 221 IGNLQVIMATNR---ADTLDPALLRPGRLDR-KIEFPLPDRRQKRLVFSTITAKMN-LSDEVDLEDYVARPDRISGADIN 295 (362)
Q Consensus 221 ~~~v~vi~aTn~---~~~lD~a~~RpgRfd~-~i~~~~P~~~~r~~i~~~~l~~~~-~~~~~~~~~la~~~~g~sgadi~ 295 (362)
..+++||+.+|. ++.|||.+.. ||.. .|.|++++.++..+|++..+.... +-++--++.+|+..... ++|++
T Consensus 900 ~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~-SGDAR 976 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV-SGDIR 976 (1164)
T ss_pred CCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-CCHHH
Confidence 356899999986 6678888776 7654 378889999999999999887532 11122255566644433 34666
Q ss_pred H---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 296 A---ICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 296 ~---~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
. +|+.|+.. .+...|+.+|+.+|+..+..
T Consensus 977 KALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 977 KALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 4 56666553 23457899999999877643
No 262
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.30 E-value=0.58 Score=44.43 Aligned_cols=86 Identities=17% Similarity=0.288 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 31 GPRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 31 se~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
+...++.+-+.+... +.-|++||++|.+-+ ...+.++..++.. ..++.+|.+|+.++.+.
T Consensus 94 ~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------------~a~naLLk~LEep--~~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 94 KIDAVREIIDNVYLTSVRGGLRVILIHPAESMNL--------------QAANSLLKVLEEP--PPQVVFLLVSHAADKVL 157 (325)
T ss_pred CHHHHHHHHHHHhhCcccCCceEEEEechhhCCH--------------HHHHHHHHHHHhC--cCCCEEEEEeCChHhCh
Confidence 356677777666542 245889999997732 2233444444433 23466777999999999
Q ss_pred ccccCCCcceeEEEccCCCHHHHHHHHHH
Q psy6770 107 PALLRPGRLDRKIEFPLPDRRQKRLVFST 135 (362)
Q Consensus 107 ~al~r~gRf~~~i~i~~P~~~~r~~il~~ 135 (362)
+.+++ |+ ..+.|+.|+.++..+.+..
T Consensus 158 ~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 158 PTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99998 87 6788999999887766643
No 263
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=92.25 E-value=0.66 Score=46.68 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 288 RISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 288 g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
++|..-...+++-|.-.|-.++.+.|+.+|+.+|+.
T Consensus 462 ~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 462 GLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred CCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 467778889999998888888999999999999975
No 264
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.12 E-value=0.74 Score=41.51 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=67.7
Q ss_pred hhhhhhhccCCe-EEEEecCCCCC---CCccccCCCCcc--eeEEecCCCHHHHHHHHHHHhcc--CCCCCCCCHHHHhh
Q psy6770 213 AKMNFMLNIGNL-QVIMATNRADT---LDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAK--MNLSDEVDLEDYVA 284 (362)
Q Consensus 213 ~~~~~~~~~~~v-~vi~aTn~~~~---lD~a~~RpgRfd--~~i~~~~P~~~~r~~i~~~~l~~--~~~~~~~~~~~la~ 284 (362)
..++...+.++. +++.+++.|.. +.|++.. |+. ..+.+..|+.+++.++++..... +.+.+++ ++-|++
T Consensus 121 ~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~ 197 (235)
T PRK08084 121 DLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLK 197 (235)
T ss_pred HHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHH
Confidence 334444445554 55555555555 5788887 987 77888899999999999886644 3333333 566776
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
..+| +.+.+..++......++.. ..+||...+.+++
T Consensus 198 ~~~~-d~r~l~~~l~~l~~~~l~~-~~~it~~~~k~~l 233 (235)
T PRK08084 198 RLDR-EMRTLFMTLDQLDRASITA-QRKLTIPFVKEIL 233 (235)
T ss_pred hhcC-CHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 6553 5667777777654333333 3568888777765
No 265
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.09 E-value=0.74 Score=46.61 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=71.6
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
..+.++..|+... .++.+|.+|+.+..|.+++.- |. .+++|..++.++-...++..+.+-++. ++-.+..|++.
T Consensus 133 A~NALLK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~ 207 (535)
T PRK08451 133 AFNALLKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARS 207 (535)
T ss_pred HHHHHHHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3567777777663 456777777888999999877 84 588899999888888888877654432 23346677877
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
+.| +..++.+++..+...+ ...|+.+++.+
T Consensus 208 s~G-dlR~alnlLdqai~~~----~~~It~~~V~~ 237 (535)
T PRK08451 208 GNG-SLRDTLTLLDQAIIYC----KNAITESKVAD 237 (535)
T ss_pred cCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHH
Confidence 665 6777777777665543 23455555543
No 266
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.04 E-value=0.51 Score=47.26 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=74.6
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.+|.++..|+... .++.+|.+|+.++.|.+.++. |. ..+.|..++.++....++..+.+.+.. ++-.+..|++.
T Consensus 132 A~NaLLK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~ 206 (491)
T PRK14964 132 AFNALLKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN 206 (491)
T ss_pred HHHHHHHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4677777776544 467888888888999988877 76 557888889988888888888765443 23347778887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
+.| +..++.+.+..+.... + ..|+.+++.+.
T Consensus 207 s~G-slR~alslLdqli~y~---~-~~It~e~V~~l 237 (491)
T PRK14964 207 SSG-SMRNALFLLEQAAIYS---N-NKISEKSVRDL 237 (491)
T ss_pred cCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHH
Confidence 765 7777878877766542 2 35676666554
No 267
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.96 E-value=0.54 Score=48.54 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=71.7
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.++..|+... +++.+|++|+.++.+.+.++. |. .++.|..++.++-...++.++.+..+. ++..+..|++.
T Consensus 134 A~NALLKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 134 SFNALLKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHHHHHHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3567777666543 567888888889999888776 77 578888889988888888888765443 23346677877
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
+.| +..++.+++..+... +...|+.+++...
T Consensus 209 S~G-dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 209 AQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 665 666666666655432 3445666666543
No 268
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.91 E-value=0.35 Score=46.27 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=54.2
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHh----c--cCC--CCCCCeEEEEEcCCCC-CCCccccCCCccee
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ----M--DGF--DQTTNVKVIMATNRAD-TLDPALLRPGRLDR 117 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~----l--d~l--~~~~~v~vi~tTn~~~-~ld~al~r~gRf~~ 117 (362)
..++|+||++.+-+. ....+.+.+.+ + ++. ....++++|+|.|-.+ .+.+++.. ||..
T Consensus 145 ~GiL~lDEInrL~~~-----------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l 211 (350)
T CHL00081 145 RGILYVDEVNLLDDH-----------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGM 211 (350)
T ss_pred CCEEEecChHhCCHH-----------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCc
Confidence 379999999987432 23334444432 1 111 1234677888777544 68999999 9999
Q ss_pred EEEccCCC-HHHHHHHHHHHH
Q psy6770 118 KIEFPLPD-RRQKRLVFSTIT 137 (362)
Q Consensus 118 ~i~i~~P~-~~~r~~il~~~~ 137 (362)
.+.++.|+ .+.+.+|++...
T Consensus 212 ~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 212 HAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred eeecCCCCChHHHHHHHHhhh
Confidence 99999998 699999998753
No 269
>KOG2227|consensus
Probab=91.82 E-value=0.43 Score=46.83 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=71.2
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccC----CCcceeEEEcc
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLR----PGRLDRKIEFP 122 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r----~gRf~~~i~i~ 122 (362)
|-++++||+|.|+..+ ..++..+ -++..+ .+.++++||..|..+.-|..|-| -+--...+.|+
T Consensus 257 ~~llVlDEmD~L~tr~-----------~~vLy~l-Fewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~ 323 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRS-----------QTVLYTL-FEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFP 323 (529)
T ss_pred eEEEEechhhHHhhcc-----------cceeeee-hhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeec
Confidence 7899999999998433 1222222 234443 46689999999998877765543 11123678999
Q ss_pred CCCHHHHHHHHHHHHccCCCCCcCC--HHHHHhcCCCCcHhhHHHH
Q psy6770 123 LPDRRQKRLVFSTITAKMNLSDEVD--LEDYVARPDRISGADINAI 166 (362)
Q Consensus 123 ~P~~~~r~~il~~~~~~~~~~~~~d--l~~la~~t~g~s~~di~~l 166 (362)
+.+.++..+|++.-+.........+ +.-.|.+-.|.|| |++.+
T Consensus 324 PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRka 368 (529)
T KOG2227|consen 324 PYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKA 368 (529)
T ss_pred CCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHH
Confidence 9999999999999988776554333 4455666666665 55443
No 270
>KOG1942|consensus
Probab=91.80 E-value=1.8 Score=40.20 Aligned_cols=96 Identities=25% Similarity=0.300 Sum_probs=53.7
Q ss_pred cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCC-------------CCCCCccccC
Q psy6770 45 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR-------------ADTLDPALLR 111 (362)
Q Consensus 45 ~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~-------------~~~ld~al~r 111 (362)
.-|.|+||||++-+ +- ..+..|-..+.+ +-.-+||.+||+ |.-+++.++.
T Consensus 295 lvPGVLFIDEVhML-----------Di---EcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 295 LVPGVLFIDEVHML-----------DI---ECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred hcCcceEeeehhhh-----------hh---HHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh
Confidence 35999999999966 11 334444333332 223345555553 4566777776
Q ss_pred CCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcH
Q psy6770 112 PGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISG 160 (362)
Q Consensus 112 ~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~ 160 (362)
|+ ..|..-+.+.++.++|++...+..++. .+..+..++.....-|.
T Consensus 358 --Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsL 404 (456)
T KOG1942|consen 358 --RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSL 404 (456)
T ss_pred --he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhH
Confidence 66 344444556777788887766655543 22235555554333333
No 271
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.78 E-value=0.5 Score=50.28 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=38.4
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhc
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA 269 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~ 269 (362)
+++++|+|||.. .|+||++. |++ .|.+..++.++..+|.+.|+-
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 679999999987 59999999 996 688888889999999999883
No 272
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.59 E-value=0.7 Score=44.56 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=63.8
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
++.++..++.. ....++|++||.+..+.+++.+ |+. .+.+..|+.++...++...+.+.++. ++-.++.++..+
T Consensus 125 ~~~ll~~le~~--~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~ 199 (367)
T PRK14970 125 FNAFLKTLEEP--PAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKA 199 (367)
T ss_pred HHHHHHHHhCC--CCceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 45566555442 2345677777888999999887 763 68899999999888888877665542 233466677654
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
.| +...+.+.+.....+ .+.. ++.+++...+
T Consensus 200 ~g-dlr~~~~~lekl~~y---~~~~-it~~~v~~~~ 230 (367)
T PRK14970 200 DG-ALRDALSIFDRVVTF---CGKN-ITRQAVTENL 230 (367)
T ss_pred CC-CHHHHHHHHHHHHHh---cCCC-CCHHHHHHHh
Confidence 43 444444444433322 2222 5555555443
No 273
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.51 E-value=2.8 Score=39.85 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=58.6
Q ss_pred cHHHHHHhhh---CCcEEEEechhhhhhh-----cCchH-------HHHHHHHHHHHHcCCeEEEeccccccccccCCCC
Q psy6770 2 LLCTSFDTEL---VTAFIRVVGSEFVQKY-----LGEGP-------RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQ 66 (362)
Q Consensus 2 lLakaiA~e~---~~~~~~v~~s~l~~~~-----~gese-------~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~ 66 (362)
++|++|-... +.+|+.|+|+.+-... +|... ..-...|+.| ....|||||||.+-.
T Consensus 37 ~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~------ 107 (329)
T TIGR02974 37 LIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL------ 107 (329)
T ss_pred HHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEeCChHhCCH------
Confidence 5778775544 4699999998653221 11100 0001123322 358999999998742
Q ss_pred CCCcHHHHHHHHHHHHhc--cCC----CCCCCeEEEEEcCCC-------CCCCccccCCCcceeEEEccCCCHHHHHH
Q psy6770 67 TGADREVQRILLELLNQM--DGF----DQTTNVKVIMATNRA-------DTLDPALLRPGRLDRKIEFPLPDRRQKRL 131 (362)
Q Consensus 67 ~~~~~~~~~~l~~lL~~l--d~l----~~~~~v~vi~tTn~~-------~~ld~al~r~gRf~~~i~i~~P~~~~r~~ 131 (362)
.....+..+|+.- ..+ ....++-+|++||.. ....+.|.. |+. .+.|.+|...+|.+
T Consensus 108 -----~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~e 177 (329)
T TIGR02974 108 -----LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQE 177 (329)
T ss_pred -----HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhh
Confidence 2234444454321 111 012357788888753 122333433 442 35667777666654
No 274
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.47 E-value=3.5 Score=37.48 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=79.2
Q ss_pred HHHHHHHH-cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC-C---ccccC
Q psy6770 37 DVFRLAKE-NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL-D---PALLR 111 (362)
Q Consensus 37 ~~F~~a~~-~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l-d---~al~r 111 (362)
.+....++ ..|.++++||.+.+..+- ...+.-|.+.-.+....-+++.++-...-..+ - ..+..
T Consensus 121 ~L~al~~~g~r~v~l~vdEah~L~~~~-----------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~ 189 (269)
T COG3267 121 ELAALVKKGKRPVVLMVDEAHDLNDSA-----------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ 189 (269)
T ss_pred HHHHHHHhCCCCeEEeehhHhhhChhH-----------HHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh
Confidence 34444333 457999999999885321 12233333322221111246666643321111 1 13334
Q ss_pred CCcceeEEEccCCCHHHHHHHHHHHHccCCCC----CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccc
Q psy6770 112 PGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS----DEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178 (362)
Q Consensus 112 ~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~----~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~ 178 (362)
|++.+|++++-+.++-...++..++..... ++-.+..+...+.| .|.-|.++|..|...+...+
T Consensus 190 --R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~ 257 (269)
T COG3267 190 --RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAG 257 (269)
T ss_pred --eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcC
Confidence 888889999999998888998888876433 33346667777788 78899999999988776554
No 275
>PRK06620 hypothetical protein; Validated
Probab=91.41 E-value=1.1 Score=39.71 Aligned_cols=107 Identities=10% Similarity=0.153 Sum_probs=70.0
Q ss_pred hhhhhhhhhccCCeEEEEecCCCCCCC-ccccCCCCcce--eEEecCCCHHHHHHHHHHHhccCC--CCCCCCHHHHhhC
Q psy6770 211 ITAKMNFMLNIGNLQVIMATNRADTLD-PALLRPGRLDR--KIEFPLPDRRQKRLVFSTITAKMN--LSDEVDLEDYVAR 285 (362)
Q Consensus 211 ~l~~~~~~~~~~~v~vi~aTn~~~~lD-~a~~RpgRfd~--~i~~~~P~~~~r~~i~~~~l~~~~--~~~~~~~~~la~~ 285 (362)
+..-.+.+.+.+..++|++|..|..+. |++.- |+.. .+.+..|+.+.+..+++......+ +++++ ++-|++.
T Consensus 102 lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~ 178 (214)
T PRK06620 102 LLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVN 178 (214)
T ss_pred HHHHHHHHHhcCCEEEEEcCCCccccchHHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Confidence 444455666777888888887777531 66655 8864 577888999999999988876433 33333 5567766
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
.. =+.+.+.+++......+.. ....||...+.+++
T Consensus 179 ~~-~d~r~l~~~l~~l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 179 LP-REYSKIIEILENINYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred cc-CCHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 53 3566777777664333333 33568887777664
No 276
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=91.35 E-value=1 Score=42.28 Aligned_cols=81 Identities=19% Similarity=0.369 Sum_probs=47.9
Q ss_pred cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccC---------CC--
Q psy6770 45 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLR---------PG-- 113 (362)
Q Consensus 45 ~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r---------~g-- 113 (362)
..|-||+|||+|.+-+.. +.++|..+..+-..+++++|.+.+. +.+..++.. .|
T Consensus 171 ~~~iViiIDdLDR~~~~~--------------i~~~l~~ik~~~~~~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEE--------------IVELLEAIKLLLDFPNIIFILAFDP-EILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred CceEEEEEcchhcCCcHH--------------HHHHHHHHHHhcCCCCeEEEEEecH-HHHHHHHHhhcCcccccccHHH
Confidence 457899999999884321 2222222222223367777776653 222222211 00
Q ss_pred ----cceeEEEccCCCHHHHHHHHHHHHccC
Q psy6770 114 ----RLDRKIEFPLPDRRQKRLVFSTITAKM 140 (362)
Q Consensus 114 ----Rf~~~i~i~~P~~~~r~~il~~~~~~~ 140 (362)
-|+..+.+|.|+..+...++...+...
T Consensus 236 yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 236 YLEKIIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred HHHhhcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 367889999999988888887775544
No 277
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.24 E-value=1 Score=44.82 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=67.2
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++++|..|+.. ..++++|++|+.++.|.++++. |.. ++.|..+..++-...++.++.+.++. ++-.+..|++.
T Consensus 137 A~NALLKtLEEP--p~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~ 211 (484)
T PRK14956 137 SFNALLKTLEEP--PAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK 211 (484)
T ss_pred HHHHHHHHhhcC--CCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 467777766543 3678999999999999999988 874 57777777777777788877654443 23346777776
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
+.|- ..|.-+++..+... ....|+.+++.+.
T Consensus 212 S~Gd-~RdAL~lLeq~i~~----~~~~it~~~V~~~ 242 (484)
T PRK14956 212 GDGS-VRDMLSFMEQAIVF----TDSKLTGVKIRKM 242 (484)
T ss_pred cCCh-HHHHHHHHHHHHHh----CCCCcCHHHHHHH
Confidence 6653 44444444443321 1224555555443
No 278
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.09 E-value=0.92 Score=46.81 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=69.5
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
+|.++..|+... +++.+|++|+.++.+.+.++. |. ..+.|..++.++-...++..+.+.++. ++-.+..|++.+
T Consensus 141 ~NaLLKtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 666776665533 567788888888888888766 66 677888888888888888888665443 223467778776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
.| +..++.+++.++... +...|+.+++.+.
T Consensus 216 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~ 245 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAF----GSGQLQEAAVRQM 245 (618)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 66 666777766555433 2345665555443
No 279
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.01 E-value=0.56 Score=49.06 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=61.7
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.|+..|+... +.+++|++|+.++.|.+.++. |.. ++.|..|+.++-...++..+.+.++. ++..+..+|+.
T Consensus 134 A~NALLKtLEEPP--~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~l 208 (725)
T PRK07133 134 AFNALLKTLEEPP--KHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKL 208 (725)
T ss_pred HHHHHHHHhhcCC--CceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4677777776543 567888888899999999887 884 78999999999888888877655443 12235667765
Q ss_pred CCCCCHHHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEA 301 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a 301 (362)
+.| +..++..++...
T Consensus 209 S~G-slR~AlslLekl 223 (725)
T PRK07133 209 SSG-SLRDALSIAEQV 223 (725)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 543 334444554444
No 280
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.84 E-value=1.3 Score=46.53 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=63.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.+|.||..|+... .++.+|++||.++.|.+.++- |. .++.|..+..++-...++.++.+.++. ++-.+..|++.
T Consensus 135 A~NALLKtLEEPP--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~ 209 (830)
T PRK07003 135 AFNAMLKTLEEPP--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA 209 (830)
T ss_pred HHHHHHHHHHhcC--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3677777666543 478899999999999888877 77 677888888888888888888755443 23346677777
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAG 302 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~ 302 (362)
++|- ..+.-+++.++.
T Consensus 210 A~Gs-mRdALsLLdQAi 225 (830)
T PRK07003 210 AQGS-MRDALSLTDQAI 225 (830)
T ss_pred cCCC-HHHHHHHHHHHH
Confidence 7764 344445544444
No 281
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.79 E-value=0.45 Score=46.40 Aligned_cols=81 Identities=7% Similarity=0.045 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPD 287 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~ 287 (362)
.|.+|..|+... .++++|.+|+.++.|.|.+++ |. ..++|+.|+.++....+.... .+. ......++..+.
T Consensus 134 anaLLk~LEep~--~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~ 204 (394)
T PRK07940 134 ANALLKAVEEPP--PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQ 204 (394)
T ss_pred HHHHHHHhhcCC--CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcC
Confidence 467777776543 345555555569999999988 87 689999999988777665322 222 234567888899
Q ss_pred CCCHHHHHHH
Q psy6770 288 RISGADINAI 297 (362)
Q Consensus 288 g~sgadi~~~ 297 (362)
|..|..+.-+
T Consensus 205 G~~~~A~~l~ 214 (394)
T PRK07940 205 GHIGRARRLA 214 (394)
T ss_pred CCHHHHHHHh
Confidence 9888766544
No 282
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.68 E-value=1.4 Score=44.37 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=68.1
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.++..|+... .++++|.+||.++.+.+++.. |.. ++.|..|+.++-...++.++.+.++. ++-.++.|++.
T Consensus 132 a~naLLk~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~ 206 (504)
T PRK14963 132 AFNALLKTLEEPP--EHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARL 206 (504)
T ss_pred HHHHHHHHHHhCC--CCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3566776666543 467888888999999999987 765 78999999999999999888765443 22235667765
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
+.| +-.++.+.+..+.. . ...|+.+++.+.+
T Consensus 207 s~G-dlR~aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 207 ADG-AMRDAESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred cCC-CHHHHHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 543 23334344443322 1 2356766665543
No 283
>PRK05642 DNA replication initiation factor; Validated
Probab=90.55 E-value=2.2 Score=38.46 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=71.5
Q ss_pred hhhhhhhhhhhccCCeEEEEecCCCCCC---CccccCCCCcc--eeEEecCCCHHHHHHHHHHHhccC--CCCCCCCHHH
Q psy6770 209 STITAKMNFMLNIGNLQVIMATNRADTL---DPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKM--NLSDEVDLED 281 (362)
Q Consensus 209 ~~~l~~~~~~~~~~~v~vi~aTn~~~~l---D~a~~RpgRfd--~~i~~~~P~~~~r~~i~~~~l~~~--~~~~~~~~~~ 281 (362)
.++...++...+.+..++++++..|..+ .|++.- ||. ..+.+..|+.++|..+++...... .++++ -++.
T Consensus 117 ~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~e-v~~~ 193 (234)
T PRK05642 117 EALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDE-VGHF 193 (234)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHH
Confidence 3455666677777777888887766544 677777 985 555567889999999999655433 33322 2555
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 282 la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
|++..+ -+++.+..++..--..++.. ..+||..-+.+++
T Consensus 194 L~~~~~-~d~r~l~~~l~~l~~~~l~~-~~~it~~~~~~~L 232 (234)
T PRK05642 194 ILTRGT-RSMSALFDLLERLDQASLQA-QRKLTIPFLKETL 232 (234)
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHHHHc-CCcCCHHHHHHHh
Confidence 666544 46777777777665544443 3667887777665
No 284
>smart00350 MCM minichromosome maintenance proteins.
Probab=90.46 E-value=2.4 Score=42.96 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=70.0
Q ss_pred CCeEEEEecCCCC-------------CCCccccCCCCcceeEEe-cCCCHHHHHHHHHHHhccCC---------CCCCCC
Q psy6770 222 GNLQVIMATNRAD-------------TLDPALLRPGRLDRKIEF-PLPDRRQKRLVFSTITAKMN---------LSDEVD 278 (362)
Q Consensus 222 ~~v~vi~aTn~~~-------------~lD~a~~RpgRfd~~i~~-~~P~~~~r~~i~~~~l~~~~---------~~~~~~ 278 (362)
.+..||+|+|-.. .|+++++. |||..+.+ +.|+.+...+|.+..+.... ....++
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~ 419 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPIS 419 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCC
Confidence 4678999999542 69999999 99997664 78999999998887653211 000011
Q ss_pred H-----------------------HHHh------hC---------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 279 L-----------------------EDYV------AR---------PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 279 ~-----------------------~~la------~~---------~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
. +.+. +. .-+.|...++.+++-|.-.|....++.|+.+|+..
T Consensus 420 ~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ 499 (509)
T smart00350 420 QEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEE 499 (509)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 1 1010 10 12457778888888887777777888899999988
Q ss_pred HHHHHh
Q psy6770 321 GYKKCA 326 (362)
Q Consensus 321 a~~~~~ 326 (362)
|+.=+.
T Consensus 500 ai~l~~ 505 (509)
T smart00350 500 AIRLLR 505 (509)
T ss_pred HHHHHH
Confidence 876543
No 285
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.43 E-value=0.69 Score=46.74 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=71.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.+|.++..|+... .++.+|++|+.++.+.+.++. |. ..+.|..++..+-...++..+.+.++. ++..+..+++.
T Consensus 135 a~naLLk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~ 209 (509)
T PRK14958 135 SFNALLKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA 209 (509)
T ss_pred HHHHHHHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3677777776654 467788888889998888766 76 556777777777777777777655443 23346677777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
+.| +..++.+++..+... +...|+.+++...+.
T Consensus 210 s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 210 ANG-SVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred cCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 665 667777777766432 334566666665543
No 286
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=90.34 E-value=2.9 Score=42.36 Aligned_cols=113 Identities=22% Similarity=0.325 Sum_probs=59.1
Q ss_pred cHHHHHHhhh---CCcEEEEechhhhhh-----hcCchHH-------HHHHHHHHHHHcCCeEEEeccccccccccCCCC
Q psy6770 2 LLCTSFDTEL---VTAFIRVVGSEFVQK-----YLGEGPR-------MVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQ 66 (362)
Q Consensus 2 lLakaiA~e~---~~~~~~v~~s~l~~~-----~~gese~-------~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~ 66 (362)
++|++|-... +.+|+.|+|..+-.. .+|.... .-...|+.| ....|||||||.+-..
T Consensus 225 ~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~----- 296 (509)
T PRK05022 225 LVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA----- 296 (509)
T ss_pred HHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-----
Confidence 5788887664 479999999876321 1221000 000123332 2478999999998532
Q ss_pred CCCcHHHHHHHHHHHHhcc--CCC----CCCCeEEEEEcCCCCCCCccccCCCcce-------eEEEccCCCHHHHHH
Q psy6770 67 TGADREVQRILLELLNQMD--GFD----QTTNVKVIMATNRADTLDPALLRPGRLD-------RKIEFPLPDRRQKRL 131 (362)
Q Consensus 67 ~~~~~~~~~~l~~lL~~ld--~l~----~~~~v~vi~tTn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~ 131 (362)
....+..+++.-. .+. ...++-+|++||..- . .+...|+|. ..+.|.+|...+|.+
T Consensus 297 ------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l--~-~~~~~~~f~~dL~~rl~~~~i~lPpLreR~e 365 (509)
T PRK05022 297 ------LQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDL--R-EEVRAGRFRADLYHRLSVFPLSVPPLRERGD 365 (509)
T ss_pred ------HHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCH--H-HHHHcCCccHHHHhcccccEeeCCCchhchh
Confidence 2334444443211 111 113577888887642 1 122223332 245677777766654
No 287
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=90.27 E-value=0.75 Score=43.70 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=35.6
Q ss_pred CCeEEEEecC-----CCCCCCccccCCCCcceeEEecCC-CHHHHHHHHHHHh
Q psy6770 222 GNLQVIMATN-----RADTLDPALLRPGRLDRKIEFPLP-DRRQKRLVFSTIT 268 (362)
Q Consensus 222 ~~v~vi~aTn-----~~~~lD~a~~RpgRfd~~i~~~~P-~~~~r~~i~~~~l 268 (362)
...+||+|+| .-..|++|+++ ||...+++++| ...+...+.....
T Consensus 153 ~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 153 PPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred CCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCc
Confidence 5678888889 77889999999 99999999999 5555555555544
No 288
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.20 E-value=1.1 Score=44.92 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=68.3
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
++.++..|+... .++++|.+|+.++.+.+++.. |+. .+.|..|+..+....++.++.+..+. ++-.+..++..+
T Consensus 136 ~naLLk~LEepp--~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s 210 (486)
T PRK14953 136 FNALLKTLEEPP--PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS 210 (486)
T ss_pred HHHHHHHHhcCC--CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 466776666543 356777777888899988887 764 68899999999999999988765543 222356677665
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
.| +..++.+.+..+... +...++.+++...
T Consensus 211 ~G-~lr~al~~Ldkl~~~----~~~~It~~~V~~~ 240 (486)
T PRK14953 211 EG-GMRDAASLLDQASTY----GEGKVTIKVVEEF 240 (486)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 53 345555566555433 2334666665553
No 289
>PRK09183 transposase/IS protein; Provisional
Probab=90.06 E-value=0.57 Score=42.95 Aligned_cols=87 Identities=11% Similarity=0.192 Sum_probs=50.0
Q ss_pred CcHHHHHHhh---hCCcEEEEechhhhhhhcC-chHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTE---LVTAFIRVVGSEFVQKYLG-EGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e---~~~~~~~v~~s~l~~~~~g-ese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|.|+.+|+.+ .|..+..++..++...+.. .....+..+|+.. ...|.+++|||++....++ .....
T Consensus 116 ThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~~~---------~~~~~ 185 (259)
T PRK09183 116 THLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPFSQ---------EEANL 185 (259)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCCCh---------HHHHH
Confidence 5788888755 4777778887777644321 1112244555543 3467899999998653221 22334
Q ss_pred HHHHHHhccCCCCCCCeEEEEEcCCC
Q psy6770 77 LLELLNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 77 l~~lL~~ld~l~~~~~v~vi~tTn~~ 102 (362)
+-++++...+ .. -+|.|||.+
T Consensus 186 lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 186 FFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred HHHHHHHHHh---cC--cEEEecCCC
Confidence 5555544321 22 267788875
No 290
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=90.02 E-value=1.2 Score=45.83 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=68.8
Q ss_pred CCeEEEEecCCCC---CCCccccCCCCcceeEEecC-CCHHHHHHHHHHHhccC-------------------------C
Q psy6770 222 GNLQVIMATNRAD---TLDPALLRPGRLDRKIEFPL-PDRRQKRLVFSTITAKM-------------------------N 272 (362)
Q Consensus 222 ~~v~vi~aTn~~~---~lD~a~~RpgRfd~~i~~~~-P~~~~r~~i~~~~l~~~-------------------------~ 272 (362)
.++.||+++|..+ .+.++++. ||+.++.+.. |...+|.+|++.++... .
T Consensus 126 ~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~ 203 (589)
T TIGR02031 126 AKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVT 203 (589)
T ss_pred CceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCcc
Confidence 3578888888765 79999999 9999998875 57788899888765211 1
Q ss_pred CCCCCCHHHHhhC--CCCCCH--HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 273 LSDEVDLEDYVAR--PDRISG--ADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 273 ~~~~~~~~~la~~--~~g~sg--adi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
+.++ .++.++.. .-|.+| ++| .+++-|.-.|..+++..|+.+|+..++.-+-+
T Consensus 204 i~~~-~~~~l~~~~~~~gv~s~Ra~i-~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 204 ISAE-QVKELVLTAASLGISGHRADL-FAVRAAKAHAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred CCHH-HHHHHHHHHHHcCCCCccHHH-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 1111 12223322 234442 333 45566666777889999999999999876543
No 291
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=89.93 E-value=0.69 Score=36.96 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=35.7
Q ss_pred CcHHHHHHhhh--------CCcEEEEechhhhh--------------hhc--CchHHHHHHHHHHHHHcCCeEEEecccc
Q psy6770 1 YLLCTSFDTEL--------VTAFIRVVGSEFVQ--------------KYL--GEGPRMVRDVFRLAKENSPAIIFIDEID 56 (362)
Q Consensus 1 slLakaiA~e~--------~~~~~~v~~s~l~~--------------~~~--gese~~l~~~F~~a~~~~P~II~iDeiD 56 (362)
|.+++.++.++ +.+++.++++...+ ... +......+.+.+.+......+|+|||+|
T Consensus 18 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~ 97 (131)
T PF13401_consen 18 TTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEAD 97 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTH
T ss_pred HHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEEEeChH
Confidence 35666777666 67777777653320 001 1234444555566666665699999999
Q ss_pred ccc
Q psy6770 57 AIA 59 (362)
Q Consensus 57 ~l~ 59 (362)
.+.
T Consensus 98 ~l~ 100 (131)
T PF13401_consen 98 HLF 100 (131)
T ss_dssp HHH
T ss_pred hcC
Confidence 975
No 292
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.78 E-value=0.68 Score=42.48 Aligned_cols=93 Identities=19% Similarity=0.196 Sum_probs=58.0
Q ss_pred CeEEEEecCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHh------h---CCCC
Q psy6770 223 NLQVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYV------A---RPDR 288 (362)
Q Consensus 223 ~v~vi~aTn~~~-----~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la------~---~~~g 288 (362)
+..||+|+|... .+++|+++ || ..+++++|+.++-.+|++.+.+ +... ..+.++ + ....
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~-~~~~iv~~~~~~R~~~~~~~ 223 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAED-SAATIVRLVREFRASGDEIT 223 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHH-HHHHHHHHHHHHHhhCCccC
Confidence 567899999763 67999999 99 6899999999999999998753 2221 122221 1 1122
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 289 ISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 289 ~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
.+ ++..+.-|...+....+..++++||.+....+
T Consensus 224 ~~---~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (262)
T TIGR02640 224 SG---LRASLMIAEVATQQDIPVDVDDEDFVDLCIDI 257 (262)
T ss_pred Cc---HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Confidence 23 34433333333333445677888887765543
No 293
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=89.74 E-value=2 Score=39.25 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=46.2
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCC
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 124 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P 124 (362)
--|++|+++|.+-. ..-|.||..++. +..++++|.+|+.++.+-|.+++ |. ..+.++.+
T Consensus 89 ~KV~II~~ae~m~~--------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLNK--------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred CEEEEeccHhhhCH--------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--he-eeeecCCh
Confidence 47999999998742 446667766664 56789999999999999999999 97 44666666
No 294
>KOG2035|consensus
Probab=89.72 E-value=2.2 Score=39.33 Aligned_cols=91 Identities=19% Similarity=0.320 Sum_probs=62.6
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHH
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 127 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~ 127 (362)
-+|+|-|.|.+.... ....++..... .++.-+|...|....+=+.+++ |+ ..|.+|.|+.+
T Consensus 129 Kvvvi~ead~LT~dA-------Q~aLRRTMEkY---------s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~e 189 (351)
T KOG2035|consen 129 KVVVINEADELTRDA-------QHALRRTMEKY---------SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDE 189 (351)
T ss_pred EEEEEechHhhhHHH-------HHHHHHHHHHH---------hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHH
Confidence 389999999985321 22223332222 2345577777888888888988 86 56899999999
Q ss_pred HHHHHHHHHHccCCCCCc-CCHHHHHhcCCC
Q psy6770 128 QKRLVFSTITAKMNLSDE-VDLEDYVARPDR 157 (362)
Q Consensus 128 ~r~~il~~~~~~~~~~~~-~dl~~la~~t~g 157 (362)
+...++...+++.++.-. .-+..+++.+.|
T Consensus 190 eI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 190 EITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 999999999988776532 234566666443
No 295
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.68 E-value=0.67 Score=47.46 Aligned_cols=103 Identities=14% Similarity=0.192 Sum_probs=68.2
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.|+..|+... +++++|++|+.++.|.+.++. |.. .+.|..|+..+....++..+.+.+.. ++-.+..+++.+
T Consensus 136 ~NaLLKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS 210 (605)
T PRK05896 136 WNALLKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLA 210 (605)
T ss_pred HHHHHHHHHhCC--CcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 566777666544 467888888899999999888 875 78999999999888888888654432 222366677766
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
.| +.+++.+.+...... .+ ..++.+++..
T Consensus 211 ~G-dlR~AlnlLekL~~y---~~-~~It~e~V~e 239 (605)
T PRK05896 211 DG-SLRDGLSILDQLSTF---KN-SEIDIEDINK 239 (605)
T ss_pred CC-cHHHHHHHHHHHHhh---cC-CCCCHHHHHH
Confidence 55 455555555543322 22 2266655544
No 296
>PF05729 NACHT: NACHT domain
Probab=89.65 E-value=1.7 Score=36.01 Aligned_cols=88 Identities=16% Similarity=0.256 Sum_probs=49.5
Q ss_pred HHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCC--CCCCCccccCCCcceeE
Q psy6770 41 LAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR--ADTLDPALLRPGRLDRK 118 (362)
Q Consensus 41 ~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~--~~~ld~al~r~gRf~~~ 118 (362)
.+....+.+|+||.+|.+...... .........+..++.. ....++-++.|++. ...+...+.. ...
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred HHHcCCceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 334556789999999999764311 1111223445555543 11223334444432 2122222222 156
Q ss_pred EEccCCCHHHHHHHHHHHHcc
Q psy6770 119 IEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 119 i~i~~P~~~~r~~il~~~~~~ 139 (362)
++++.-+.+++.++++.+++.
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEECCCCHHHHHHHHHHHhhc
Confidence 889888999999999998864
No 297
>PRK08181 transposase; Validated
Probab=89.45 E-value=1 Score=41.55 Aligned_cols=86 Identities=10% Similarity=0.163 Sum_probs=51.6
Q ss_pred CcHHHHHHhh---hCCcEEEEechhhhhhhcC-chHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTE---LVTAFIRVVGSEFVQKYLG-EGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e---~~~~~~~v~~s~l~~~~~g-ese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|.|+.|||++ .|..++.++..+++..... .....+.++++.. .++.+|+|||++.+..+ ......
T Consensus 120 THLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~---------~~~~~~ 188 (269)
T PRK08181 120 SHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD---------QAETSV 188 (269)
T ss_pred HHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC---------HHHHHH
Confidence 5688888864 4778888888888765421 1112233344433 35689999999876432 222345
Q ss_pred HHHHHHhccCCCCCCCeEEEEEcCCC
Q psy6770 77 LLELLNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 77 l~~lL~~ld~l~~~~~v~vi~tTn~~ 102 (362)
+-++++...+ . --+|.|||.+
T Consensus 189 Lf~lin~R~~---~--~s~IiTSN~~ 209 (269)
T PRK08181 189 LFELISARYE---R--RSILITANQP 209 (269)
T ss_pred HHHHHHHHHh---C--CCEEEEcCCC
Confidence 6666654322 1 2478888875
No 298
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=89.42 E-value=3 Score=42.43 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=74.7
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHH---------------HHHcCCeEEEecccccccccc
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRL---------------AKENSPAIIFIDEIDAIATKR 62 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~---------------a~~~~P~II~iDeiD~l~~~r 62 (362)
+++|++|.... +.+|+.|+|..+-..+. -..+|-. ........|||||||.+-..
T Consensus 233 ~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~- 305 (534)
T TIGR01817 233 ELIAKAIHYLSPRAKRPFVKVNCAALSETLL------ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA- 305 (534)
T ss_pred HHHHHHHHHhCCCCCCCeEEeecCCCCHHHH------HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHH-
Confidence 36888888764 56999999987632211 0112210 01123478999999988432
Q ss_pred CCCCCCCcHHHHHHHHHHHHhc--cCCCC----CCCeEEEEEcCCCCCCCccccCCCccee-------EEEccCCCHHHH
Q psy6770 63 FDAQTGADREVQRILLELLNQM--DGFDQ----TTNVKVIMATNRADTLDPALLRPGRLDR-------KIEFPLPDRRQK 129 (362)
Q Consensus 63 ~~~~~~~~~~~~~~l~~lL~~l--d~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~~-------~i~i~~P~~~~r 129 (362)
....+..++..- ..... ..++-+|++|+.. +.. +...|+|.. .+.+.+|...+|
T Consensus 306 ----------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR 372 (534)
T TIGR01817 306 ----------FQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD--LEE-AVAKGEFRADLYYRINVVPIFLPPLRER 372 (534)
T ss_pred ----------HHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC--HHH-HHHcCCCCHHHHHHhcCCeeeCCCcccc
Confidence 234444444321 11101 1246788887753 221 222344422 334555554444
Q ss_pred ----HHHHHHHHccCC----CCCcCC---HHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 130 ----RLVFSTITAKMN----LSDEVD---LEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 130 ----~~il~~~~~~~~----~~~~~d---l~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
..+++.++.... ....++ +..|....=-=...++++++..++..+
T Consensus 373 ~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 373 REDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred cccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 345555554321 111222 222332221224556667777666543
No 299
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.40 E-value=3.2 Score=33.99 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 37 DVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 37 ~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
..+..+....|.+|+|||+..+...........+......+..++..+.. .++.+|++++.+...
T Consensus 76 ~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~~~~ 140 (165)
T cd01120 76 KAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK----GGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc----CCceEEEEEecCCcc
Confidence 34566677789999999999987543211112223334555566555432 355566666555433
No 300
>smart00350 MCM minichromosome maintenance proteins.
Probab=89.34 E-value=1.3 Score=44.81 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=54.5
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhc------cCC--CCCCCeEEEEEcCCCC-------------CC
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM------DGF--DQTTNVKVIMATNRAD-------------TL 105 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l------d~l--~~~~~v~vi~tTn~~~-------------~l 105 (362)
..+++|||+|.+-+ .....+.+.+.+= .+. .-+.+..+|+|+|-.. .+
T Consensus 301 ~Gil~iDEi~~l~~-----------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l 369 (509)
T smart00350 301 NGVCCIDEFDKMDD-----------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDL 369 (509)
T ss_pred CCEEEEechhhCCH-----------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCC
Confidence 47999999998732 2234445544321 111 1124678889988542 69
Q ss_pred CccccCCCcceeEEEc-cCCCHHHHHHHHHHHHcc
Q psy6770 106 DPALLRPGRLDRKIEF-PLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 106 d~al~r~gRf~~~i~i-~~P~~~~r~~il~~~~~~ 139 (362)
++++++ |||..+.+ +.|+.+...+|.++.+..
T Consensus 370 ~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 370 PAPILS--RFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred ChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 999999 99976555 789999999999886643
No 301
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=89.30 E-value=1.4 Score=43.40 Aligned_cols=117 Identities=21% Similarity=0.342 Sum_probs=60.7
Q ss_pred cHHHHHHhh---hCCcEEEEechhhhhhhcCchHHHHHHHHHH---------------HHHcCCeEEEeccccccccccC
Q psy6770 2 LLCTSFDTE---LVTAFIRVVGSEFVQKYLGEGPRMVRDVFRL---------------AKENSPAIIFIDEIDAIATKRF 63 (362)
Q Consensus 2 lLakaiA~e---~~~~~~~v~~s~l~~~~~gese~~l~~~F~~---------------a~~~~P~II~iDeiD~l~~~r~ 63 (362)
++|+++-.. .+.+|+.++|+.+...+. -..+|.. .....+.+|||||||.+-+.
T Consensus 177 ~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~-- 248 (441)
T PRK10365 177 LVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM-- 248 (441)
T ss_pred HHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH--
Confidence 466777543 457999999986643221 1112211 11223688999999998532
Q ss_pred CCCCCCcHHHHHHHHHHHHhcc--CCCC----CCCeEEEEEcCCCCCCCccccCCCccee-------EEEccCCCHHHHH
Q psy6770 64 DAQTGADREVQRILLELLNQMD--GFDQ----TTNVKVIMATNRADTLDPALLRPGRLDR-------KIEFPLPDRRQKR 130 (362)
Q Consensus 64 ~~~~~~~~~~~~~l~~lL~~ld--~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~~-------~i~i~~P~~~~r~ 130 (362)
....+..++..-. .+.. ..++-+|++|+.+- .....+|+|.. .+.+.+|...+|.
T Consensus 249 ---------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~ 316 (441)
T PRK10365 249 ---------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRR 316 (441)
T ss_pred ---------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcc
Confidence 1223333332210 1101 12456777776532 13334556643 4677777777665
Q ss_pred H----HHHHHHc
Q psy6770 131 L----VFSTITA 138 (362)
Q Consensus 131 ~----il~~~~~ 138 (362)
+ +++.++.
T Consensus 317 ~Di~~l~~~~l~ 328 (441)
T PRK10365 317 EDIPLLAGHFLQ 328 (441)
T ss_pred hhHHHHHHHHHH
Confidence 4 4444444
No 302
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=89.15 E-value=3.9 Score=35.83 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcC-CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCcccc
Q psy6770 32 PRMVRDVFRLAKENS-PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALL 110 (362)
Q Consensus 32 e~~l~~~F~~a~~~~-P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~ 110 (362)
...++.+.+.+.... ..-++|+++|.+. ....|.||.-++. +..++++|..|+.+..+.|.++
T Consensus 39 Vd~iReii~~~~~~~~~~k~iI~~a~~l~--------------~~A~NaLLK~LEE--Pp~~~~fiL~t~~~~~llpTI~ 102 (206)
T PRK08485 39 IEDAKEVIAEAYIAESEEKIIVIAAPSYG--------------IEAQNALLKILEE--PPKNICFIIVAKSKNLLLPTIR 102 (206)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCchHHH
Confidence 345666666554321 2334577888663 2446677777774 5667888888888999999999
Q ss_pred CCCccee------------EEEccCCCHHHHHHHHHH
Q psy6770 111 RPGRLDR------------KIEFPLPDRRQKRLVFST 135 (362)
Q Consensus 111 r~gRf~~------------~i~i~~P~~~~r~~il~~ 135 (362)
+ |+.. .+.+...+.++....++.
T Consensus 103 S--Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 103 S--RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred h--hheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 8 8854 467778888888888877
No 303
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.14 E-value=1.8 Score=44.61 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=70.5
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.|+..|+... .++.+|.+|+.++.+.+.+.. |. ..+.|..|+.++-...++..+.+.... ++-.++.|++.
T Consensus 148 a~naLLKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~ 222 (598)
T PRK09111 148 AFNALLKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA 222 (598)
T ss_pred HHHHHHHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3677777766654 456777778888888888765 66 578899999999888888888765443 22345666776
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
+.| +..++.+.+.++... +...|+.+++.+.+
T Consensus 223 a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred cCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 665 666676666665433 22346666665443
No 304
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.12 E-value=0.81 Score=47.08 Aligned_cols=103 Identities=8% Similarity=0.103 Sum_probs=64.1
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.|+..|+... +++++|++||.++.+.+.++. |. .++.|..++.++-..+++..+.+..+. ++-.++.|++.+
T Consensus 136 ~naLLk~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s 210 (624)
T PRK14959 136 FNALLKTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRA 210 (624)
T ss_pred HHHHHHHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 466776665533 568888889999999888776 77 467898899988888888877654432 222466677654
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
. .|+..+++..-..+ ..+...|+.+++.+
T Consensus 211 ~----GdlR~Al~lLeqll-~~g~~~It~d~V~~ 239 (624)
T PRK14959 211 A----GSVRDSMSLLGQVL-ALGESRLTIDGARG 239 (624)
T ss_pred C----CCHHHHHHHHHHHH-HhcCCCcCHHHHHH
Confidence 4 33433333221111 22344566665443
No 305
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=89.06 E-value=3.7 Score=41.65 Aligned_cols=114 Identities=23% Similarity=0.369 Sum_probs=59.4
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhh-----hcCchH-------HHHHHHHHHHHHcCCeEEEeccccccccccCCC
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQK-----YLGEGP-------RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDA 65 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~-----~~gese-------~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~ 65 (362)
++||++|-... +.+|+.++|+.+-.. .+|... ..-..+|+.| ....|||||||.+-+.
T Consensus 241 ~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~---- 313 (520)
T PRK10820 241 DLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR---- 313 (520)
T ss_pred HHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH----
Confidence 36788874433 369999999876321 112100 0001233333 2478999999988432
Q ss_pred CCCCcHHHHHHHHHHHHh--ccCCC----CCCCeEEEEEcCCCC-------CCCccccCCCcceeEEEccCCCHHHHHH
Q psy6770 66 QTGADREVQRILLELLNQ--MDGFD----QTTNVKVIMATNRAD-------TLDPALLRPGRLDRKIEFPLPDRRQKRL 131 (362)
Q Consensus 66 ~~~~~~~~~~~l~~lL~~--ld~l~----~~~~v~vi~tTn~~~-------~ld~al~r~gRf~~~i~i~~P~~~~r~~ 131 (362)
....+..+++. +.... ...++-+|++|+.+- ...+.+.. |+. .+.+.+|...+|.+
T Consensus 314 -------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~ 382 (520)
T PRK10820 314 -------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQ 382 (520)
T ss_pred -------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChh
Confidence 23444455543 11111 113467888777642 12233433 543 36677777666653
No 306
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=88.99 E-value=2.2 Score=44.35 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=61.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.+|.||..|+... +++.+|++|+.++.|.+.++- |. ..++|..++.++-...++.++.+..+. ++-.+..|++.
T Consensus 135 a~NALLKtLEEPp--~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 135 SFNALLKTLEEPP--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA 209 (647)
T ss_pred HHHHHHHHHHcCC--CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4677777666543 577888888899999988777 75 778888889998888888888654433 22345667776
Q ss_pred CCCCCHHHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEA 301 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a 301 (362)
+.| +..+.-+++..|
T Consensus 210 s~G-s~R~Al~lldqa 224 (647)
T PRK07994 210 ADG-SMRDALSLTDQA 224 (647)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 655 344455555444
No 307
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.94 E-value=0.85 Score=42.51 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=62.1
Q ss_pred CCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC--CCCCHH----HHhhCCCCCCHHHHHHHHHHHHHHHHHhc
Q psy6770 236 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS--DEVDLE----DYVARPDRISGADINAICQEAGMHAVREN 309 (362)
Q Consensus 236 lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~--~~~~~~----~la~~~~g~sgadi~~~~~~a~~~a~~~~ 309 (362)
-|+.+-+ ||+-...=.-...++...++..+-+.+++. +.+.-. .|-..|+|.+| +|..+++.|+..|++.|
T Consensus 197 ~D~QLa~--RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 197 TDPQLAS--RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred cCHHHHh--ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcC
Confidence 3788877 988654422233455566777777777664 334333 34567899988 68899999999999999
Q ss_pred CCCCCHHHHHHHHHHHhCc
Q psy6770 310 RYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 310 ~~~v~~~~~~~a~~~~~~~ 328 (362)
.+.|+.+.+.. +..+.|+
T Consensus 274 ~E~It~~~l~~-~~~~~ps 291 (302)
T PF05621_consen 274 EERITREILDK-IDWVPPS 291 (302)
T ss_pred CceecHHHHhh-CCCcChh
Confidence 99999887755 3444444
No 308
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.93 E-value=1.1 Score=41.92 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=65.2
Q ss_pred hhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCC
Q psy6770 210 TITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDR 288 (362)
Q Consensus 210 ~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g 288 (362)
.+...++.... +..+|.++|.+..+.+++.+ |+. .+.|+.|+.++...+++.++++..+. ++-.++.+++.+.
T Consensus 121 ~L~~~le~~~~--~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~- 194 (319)
T PRK00440 121 ALRRTMEMYSQ--NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSE- 194 (319)
T ss_pred HHHHHHhcCCC--CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 34444444332 34566677888888788777 765 58999999999999999988765543 2334666776544
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy6770 289 ISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324 (362)
Q Consensus 289 ~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~ 324 (362)
+|+..+.+.....+.. ...|+.+++..++..
T Consensus 195 ---gd~r~~~~~l~~~~~~--~~~it~~~v~~~~~~ 225 (319)
T PRK00440 195 ---GDMRKAINALQAAAAT--GKEVTEEAVYKITGT 225 (319)
T ss_pred ---CCHHHHHHHHHHHHHc--CCCCCHHHHHHHhCC
Confidence 4455444433332222 356788877766543
No 309
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=88.85 E-value=4.9 Score=38.12 Aligned_cols=113 Identities=22% Similarity=0.318 Sum_probs=57.7
Q ss_pred cHHHHHHhhh---CCcEEEEechhhhh-----hhcCchH-------HHHHHHHHHHHHcCCeEEEeccccccccccCCCC
Q psy6770 2 LLCTSFDTEL---VTAFIRVVGSEFVQ-----KYLGEGP-------RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQ 66 (362)
Q Consensus 2 lLakaiA~e~---~~~~~~v~~s~l~~-----~~~gese-------~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~ 66 (362)
++|++|-... +.+|+.|+|..+-. .++|... ..-...|+.| ....+||||+|.+-..
T Consensus 44 ~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~----- 115 (326)
T PRK11608 44 LIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML----- 115 (326)
T ss_pred HHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-----
Confidence 5677775444 46999999987531 1222110 0001122222 3478999999988432
Q ss_pred CCCcHHHHHHHHHHHHhcc--CCC----CCCCeEEEEEcCCC-------CCCCccccCCCcceeEEEccCCCHHHHHH
Q psy6770 67 TGADREVQRILLELLNQMD--GFD----QTTNVKVIMATNRA-------DTLDPALLRPGRLDRKIEFPLPDRRQKRL 131 (362)
Q Consensus 67 ~~~~~~~~~~l~~lL~~ld--~l~----~~~~v~vi~tTn~~-------~~ld~al~r~gRf~~~i~i~~P~~~~r~~ 131 (362)
....+..+++.-. ... ...++-+|++|+.. ..+.+.+.. ||. .+.+.+|...+|.+
T Consensus 116 ------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 116 ------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 2334444443211 110 11247788877753 233444554 552 34556666666644
No 310
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.83 E-value=1.6 Score=44.67 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=69.5
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.++..|+.. ...+++|++|+.++.|.+++.. |.. .+.|..|+.++....++..+.+..+. ++-.+..|++.
T Consensus 135 a~naLLK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~ 209 (563)
T PRK06647 135 AFNALLKTIEEP--PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK 209 (563)
T ss_pred HHHHHHHhhccC--CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356677766643 3567888888889999998877 776 57888899998888888887654433 23346667776
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
+.| +..++.+++..+...+ + ..++.+++.+.
T Consensus 210 s~G-dlR~alslLdklis~~---~-~~It~e~V~~l 240 (563)
T PRK06647 210 STG-SVRDAYTLFDQVVSFS---D-SDITLEQIRSK 240 (563)
T ss_pred cCC-CHHHHHHHHHHHHhhc---C-CCCCHHHHHHH
Confidence 665 5666666666554321 2 34565555443
No 311
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=88.82 E-value=1.7 Score=45.14 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=62.2
Q ss_pred CeEEEEe-cCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHH
Q psy6770 223 NLQVIMA-TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQE 300 (362)
Q Consensus 223 ~v~vi~a-Tn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~ 300 (362)
++++|++ |+.++.+++++.. |+. .++++..+.++...|++.++.+.... ++--++.|++.+. .|...-+++..
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~ 397 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILAD 397 (615)
T ss_pred eEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHH
Confidence 4556654 5668899999877 997 46788889999999999998865432 1222444555432 45444444333
Q ss_pred HHHHHHHh--------cCCCCCHHHHHHHHHHHhC
Q psy6770 301 AGMHAVRE--------NRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 301 a~~~a~~~--------~~~~v~~~~~~~a~~~~~~ 327 (362)
+.-.++.. +...|+.+|+.+++..-+.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r~ 432 (615)
T TIGR02903 398 VYGYALYRAAEAGKENDKVTITQDDVYEVIQISRL 432 (615)
T ss_pred HHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCcC
Confidence 32222111 1236888999988876543
No 312
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.81 E-value=1.2 Score=44.44 Aligned_cols=104 Identities=10% Similarity=0.061 Sum_probs=64.9
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.++..|+... +++++|++||.++.|.+++.. |.. .+.|..|+.++-...++..+.+.+.. ++..++.|+..+
T Consensus 138 ~n~LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s 212 (451)
T PRK06305 138 FNSLLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAA 212 (451)
T ss_pred HHHHHHHhhcCC--CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 566777666643 467788888889999999887 774 68898899988888888877654432 223466677655
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
.| |+..+.+..-..+...+ ..|+.+++.+.
T Consensus 213 ~g----dlr~a~~~Lekl~~~~~-~~It~~~V~~l 242 (451)
T PRK06305 213 QG----SLRDAESLYDYVVGLFP-KSLDPDSVAKA 242 (451)
T ss_pred CC----CHHHHHHHHHHHHHhcc-CCcCHHHHHHH
Confidence 43 44444333322222222 23565555443
No 313
>PRK12377 putative replication protein; Provisional
Probab=88.80 E-value=1.2 Score=40.46 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=50.3
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCc--hHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGE--GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQR 75 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~ge--se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~ 75 (362)
|.||.|||+++ |..++.++..+++...... .......+++.. ....+|+|||+.....+ .....
T Consensus 115 ThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s---------~~~~~ 183 (248)
T PRK12377 115 NHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET---------KNEQV 183 (248)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC---------HHHHH
Confidence 46888999887 6778888888877643210 000112233332 35689999999765321 12245
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEcCCC
Q psy6770 76 ILLELLNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 76 ~l~~lL~~ld~l~~~~~v~vi~tTn~~ 102 (362)
++.++++.-. .+...+|.|||..
T Consensus 184 ~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 184 VLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHHHHHH----hcCCCEEEEcCCC
Confidence 5666664321 2234578889964
No 314
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=88.75 E-value=1.4 Score=41.35 Aligned_cols=71 Identities=15% Similarity=0.336 Sum_probs=52.2
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCC
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 125 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~ 125 (362)
..-|++||++|.+. ....+.||..++. +...+++|.+|+.++.+-+.+++ |+ ..+++..|+
T Consensus 90 ~~KvvII~~~e~m~--------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~ 150 (299)
T PRK07132 90 QKKILIIKNIEKTS--------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPD 150 (299)
T ss_pred CceEEEEecccccC--------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCC
Confidence 45799999988663 1345566666664 45667777777788999999988 77 568999999
Q ss_pred HHHHHHHHHH
Q psy6770 126 RRQKRLVFST 135 (362)
Q Consensus 126 ~~~r~~il~~ 135 (362)
.++....+..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8887766654
No 315
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=88.73 E-value=0.52 Score=45.78 Aligned_cols=156 Identities=19% Similarity=0.289 Sum_probs=75.4
Q ss_pred cHHHHHH---hh-hCCcEEEEechhhhhhhc-----Cc-------hHHHHHHHHHHHHHcCCeEEEeccccccccccCCC
Q psy6770 2 LLCTSFD---TE-LVTAFIRVVGSEFVQKYL-----GE-------GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDA 65 (362)
Q Consensus 2 lLakaiA---~e-~~~~~~~v~~s~l~~~~~-----ge-------se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~ 65 (362)
++|++|. .. .+.||+.+||..+-.... |- ....=.-+|+.|. -.++|+|||..+-+.
T Consensus 116 l~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~LP~~---- 188 (403)
T COG1221 116 LFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRLPPE---- 188 (403)
T ss_pred HHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhCCHh----
Confidence 4455544 33 467999999987753211 10 0000011222222 269999999988532
Q ss_pred CCCCcHHHHHHHHHHHHh-----ccCC-CCCCCeEEEEEcCCCCCCCccccC-----CCcceeEEEccCCCHHHHHH---
Q psy6770 66 QTGADREVQRILLELLNQ-----MDGF-DQTTNVKVIMATNRADTLDPALLR-----PGRLDRKIEFPLPDRRQKRL--- 131 (362)
Q Consensus 66 ~~~~~~~~~~~l~~lL~~-----ld~l-~~~~~v~vi~tTn~~~~ld~al~r-----~gRf~~~i~i~~P~~~~r~~--- 131 (362)
....+..+|+. +.+- ....+|-+|++||. +++.+++. .-|+ .+.|.+|...+|..
T Consensus 189 -------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~--~~~I~LPpLrER~~Di~ 257 (403)
T COG1221 189 -------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRLN--ILTITLPPLRERKEDIL 257 (403)
T ss_pred -------HHHHHHHHHHcCceEecCCCCCcCCCceeeecccc--CHHHHHHhhcchhhhhc--CceecCCChhhchhhHH
Confidence 23445555543 2210 12346888888874 34333332 0033 34455566655543
Q ss_pred -HHHHHHc----cCCCCCcCCH----HHHHhcCCCCcHhhHHHHHHHHHHhhc
Q psy6770 132 -VFSTITA----KMNLSDEVDL----EDYVARPDRISGADINAICQEVIMATN 175 (362)
Q Consensus 132 -il~~~~~----~~~~~~~~dl----~~la~~t~g~s~~di~~l~~~a~~~~~ 175 (362)
++..+++ +.+.....+. ..+-...--=.-+++++++..++..+.
T Consensus 258 ~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 258 LLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 4444443 3333211111 122211111145677788877776653
No 316
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=88.65 E-value=2.3 Score=42.12 Aligned_cols=113 Identities=22% Similarity=0.412 Sum_probs=58.9
Q ss_pred cHHHHHHhh---hCCcEEEEechhhhhhh-----cCchHH-------HHHHHHHHHHHcCCeEEEeccccccccccCCCC
Q psy6770 2 LLCTSFDTE---LVTAFIRVVGSEFVQKY-----LGEGPR-------MVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQ 66 (362)
Q Consensus 2 lLakaiA~e---~~~~~~~v~~s~l~~~~-----~gese~-------~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~ 66 (362)
++|+++... .+.+|+.++|..+-..+ +|.... .-...|.. ....+|||||+|.+-..
T Consensus 181 ~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~----- 252 (457)
T PRK11361 181 LIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLV----- 252 (457)
T ss_pred HHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHH-----
Confidence 577777554 44799999998763221 111000 00001111 22478999999988532
Q ss_pred CCCcHHHHHHHHHHHHhc--cCCCC----CCCeEEEEEcCCCCCCCccccCCCccee-------EEEccCCCHHHHHH
Q psy6770 67 TGADREVQRILLELLNQM--DGFDQ----TTNVKVIMATNRADTLDPALLRPGRLDR-------KIEFPLPDRRQKRL 131 (362)
Q Consensus 67 ~~~~~~~~~~l~~lL~~l--d~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~~-------~i~i~~P~~~~r~~ 131 (362)
....+..++..- ..+.. ..++-+|++||..- . .+.+.|+|.. .+.+.+|...+|.+
T Consensus 253 ------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l--~-~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~ 321 (457)
T PRK11361 253 ------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL--Q-AMVKEGTFREDLFYRLNVIHLILPPLRDRRE 321 (457)
T ss_pred ------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhchh
Confidence 223344444321 11111 13477888887532 1 2333344433 46777888777755
No 317
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=88.64 E-value=5.2 Score=42.09 Aligned_cols=113 Identities=20% Similarity=0.353 Sum_probs=60.8
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhh-----hhcCc--------hHHHHHHHHHHHHHcCCeEEEeccccccccccCC
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQ-----KYLGE--------GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFD 64 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~-----~~~ge--------se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~ 64 (362)
+++|++|.... +.+|+.++|..+-. ..+|. ..... ..|+.| ....+||||||.+-.
T Consensus 413 ~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~a---~~GtL~Ldei~~L~~---- 484 (686)
T PRK15429 413 ELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFELA---DKSSLFLDEVGDMPL---- 484 (686)
T ss_pred HHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchh-hHHHhc---CCCeEEEechhhCCH----
Confidence 36888887654 56999999976532 12221 11111 123332 348999999998742
Q ss_pred CCCCCcHHHHHHHHHHHHhc--cCCC----CCCCeEEEEEcCCCCCCCccccCCCccee-------EEEccCCCHHHHHH
Q psy6770 65 AQTGADREVQRILLELLNQM--DGFD----QTTNVKVIMATNRADTLDPALLRPGRLDR-------KIEFPLPDRRQKRL 131 (362)
Q Consensus 65 ~~~~~~~~~~~~l~~lL~~l--d~l~----~~~~v~vi~tTn~~~~ld~al~r~gRf~~-------~i~i~~P~~~~r~~ 131 (362)
.....+..+++.- ..+. ...++-+|++|+..- . .+...|+|.. .+.|.+|...+|.+
T Consensus 485 -------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l--~-~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~ 554 (686)
T PRK15429 485 -------ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDL--K-KMVADREFRSDLYYRLNVFPIHLPPLRERPE 554 (686)
T ss_pred -------HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCH--H-HHHHcCcccHHHHhccCeeEEeCCChhhhHh
Confidence 2234444454331 1111 123577888887642 1 1112223332 46677888777755
No 318
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=88.28 E-value=0.77 Score=41.01 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=46.8
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCC
Q psy6770 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRIS 290 (362)
Q Consensus 223 ~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~s 290 (362)
+..+|+||++...|.+.++- ||.....+.+=+.++-..|++.-.+.+.+. ++-....+|.++.|..
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 47789999999999999998 999999999889999888988877766554 2223556777777643
No 319
>KOG1051|consensus
Probab=88.25 E-value=2.3 Score=45.50 Aligned_cols=85 Identities=22% Similarity=0.334 Sum_probs=54.5
Q ss_pred HHHHHHhhhC---CcEEEEechh------hhhh---hcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCc
Q psy6770 3 LCTSFDTELV---TAFIRVVGSE------FVQK---YLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGAD 70 (362)
Q Consensus 3 LakaiA~e~~---~~~~~v~~s~------l~~~---~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~ 70 (362)
||+|+|..+- -.|+.|+.++ +++. |.|.++ .-.+.+..++.--+||||||||.- +
T Consensus 607 lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-----------h 673 (898)
T KOG1051|consen 607 LAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-----------H 673 (898)
T ss_pred HHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-----------C
Confidence 7888887653 4788898885 3332 556432 335666666666699999999953 3
Q ss_pred HHHHHHHHHHHHhccCCC---------CCCCeEEEEEcCCCC
Q psy6770 71 REVQRILLELLNQMDGFD---------QTTNVKVIMATNRAD 103 (362)
Q Consensus 71 ~~~~~~l~~lL~~ld~l~---------~~~~v~vi~tTn~~~ 103 (362)
. .+++.|++.+|.-+ .-.++++|+|+|.-.
T Consensus 674 ~---~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 674 P---DVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred H---HHHHHHHHHHhcCccccCCCcEeeccceEEEEecccch
Confidence 3 34555555555321 124699999988643
No 320
>KOG2228|consensus
Probab=87.92 E-value=2.1 Score=40.46 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=59.3
Q ss_pred cCchHHHHHHHHHHHHHc-----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCC
Q psy6770 28 LGEGPRMVRDVFRLAKEN-----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 28 ~gese~~l~~~F~~a~~~-----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~ 102 (362)
+|....++..+....+.. .|.|.++||||.+++.. -...+-.+++.-+ ....++.+|+.|.+.
T Consensus 114 ~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----------rQtllYnlfDisq--s~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 114 FGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----------RQTLLYNLFDISQ--SARAPICIIGVTTRL 181 (408)
T ss_pred ecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----------hhHHHHHHHHHHh--hcCCCeEEEEeeccc
Confidence 344445555565555432 34566778999998542 0123344443322 235689999998887
Q ss_pred CCC---CccccCCCcceeE-EEccCC-CHHHHHHHHHHHH
Q psy6770 103 DTL---DPALLRPGRLDRK-IEFPLP-DRRQKRLVFSTIT 137 (362)
Q Consensus 103 ~~l---d~al~r~gRf~~~-i~i~~P-~~~~r~~il~~~~ 137 (362)
+.+ ..-+++ ||..+ |++++| +.++-..+++..+
T Consensus 182 d~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 755 456677 99866 777655 3667777777776
No 321
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=87.73 E-value=2.3 Score=45.46 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=58.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.+|.||+.|+... .++++|++|+.++.|-+.+.- |. .++.|..+..++-...++.++++.++. ++..+..|++.
T Consensus 136 a~NaLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~ 210 (824)
T PRK07764 136 GFNALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA 210 (824)
T ss_pred HHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3567777666655 467888888888888888765 65 577888888888888888888655443 22235556666
Q ss_pred CCCCCHHHHHHHHHH
Q psy6770 286 PDRISGADINAICQE 300 (362)
Q Consensus 286 ~~g~sgadi~~~~~~ 300 (362)
+.| +-.++.+++.+
T Consensus 211 sgG-dlR~Al~eLEK 224 (824)
T PRK07764 211 GGG-SVRDSLSVLDQ 224 (824)
T ss_pred cCC-CHHHHHHHHHH
Confidence 554 44444444443
No 322
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.61 E-value=1.3 Score=45.84 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=63.5
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSD-EVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~-~~~~~~la~~ 285 (362)
.+|.||+.|+... +++++|++||.++.|.+.++. |. .++.|..++.++-.+.++.++.+.++.- +..+..|++.
T Consensus 140 AaNALLKTLEEPP--~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhccCC--CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4677887666543 578999999999999999887 77 6788888898888888888876544432 1225667776
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAG 302 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~ 302 (362)
+.| |..+.-+++.++.
T Consensus 215 A~G-s~RdALsLLdQai 230 (700)
T PRK12323 215 AQG-SMRDALSLTDQAI 230 (700)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 555 4555556655543
No 323
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=87.59 E-value=2.1 Score=44.61 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=67.1
Q ss_pred CCeEEEEecCCC-CCCCccccCCCCcceeEEecCCC-HHHHHHHHHHHhcc-----------------------------
Q psy6770 222 GNLQVIMATNRA-DTLDPALLRPGRLDRKIEFPLPD-RRQKRLVFSTITAK----------------------------- 270 (362)
Q Consensus 222 ~~v~vi~aTn~~-~~lD~a~~RpgRfd~~i~~~~P~-~~~r~~i~~~~l~~----------------------------- 270 (362)
.++.+|+++|-. ..+.++++. ||+.+|.++.|. .+++.++++..+..
T Consensus 168 ~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~ 245 (633)
T TIGR02442 168 ARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLL 245 (633)
T ss_pred CCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 468899999853 368899999 999999999874 57777777653320
Q ss_pred --CCCCCCCCHHHHhhCC--CCCC-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 271 --MNLSDEVDLEDYVARP--DRIS-GADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 271 --~~~~~~~~~~~la~~~--~g~s-gadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
+.+. +-.++.++..+ .|.+ ..-...+++-|.-.|..+++..|+.+|+..|+.-+-+
T Consensus 246 ~~V~is-~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 246 PSVRIS-DSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLP 306 (633)
T ss_pred CCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhh
Confidence 1111 11122233321 3442 3333456677777778889999999999998776543
No 324
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=87.59 E-value=1.6 Score=45.54 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=71.6
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.|+..|+... +++.+|++||.++.+.+.++. |+ ..+.|..++.++-...++.++.+.++. ++-.+..|++.
T Consensus 135 A~NALLKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~ 209 (709)
T PRK08691 135 AFNAMLKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA 209 (709)
T ss_pred HHHHHHHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 3677777777544 567888888899999888764 76 446666788888888888888765443 22246777776
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
+. =+..++.+++..+... +...|+.+++...+.
T Consensus 210 A~-GslRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 210 AA-GSMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred hC-CCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 64 4566777777665543 234566666555443
No 325
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=87.50 E-value=2 Score=41.76 Aligned_cols=83 Identities=20% Similarity=0.386 Sum_probs=56.3
Q ss_pred HHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHh------ccCC--CCCCCeEEEEEcCCC-CCCCccccCC
Q psy6770 42 AKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ------MDGF--DQTTNVKVIMATNRA-DTLDPALLRP 112 (362)
Q Consensus 42 a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~------ld~l--~~~~~v~vi~tTn~~-~~ld~al~r~ 112 (362)
|+.+. .|++|||+-.|- +.....+.+.+.+ .+|+ ....++++|+|+|-- ..|-|-|+.
T Consensus 141 a~AnR-GIlYvDEvnlL~-----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD- 207 (423)
T COG1239 141 ARANR-GILYVDEVNLLD-----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD- 207 (423)
T ss_pred hhccC-CEEEEecccccc-----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh-
Confidence 34444 799999987662 2223333333322 1222 345579999999963 477788888
Q ss_pred CcceeEEEccCCC-HHHHHHHHHHHHc
Q psy6770 113 GRLDRKIEFPLPD-RRQKRLVFSTITA 138 (362)
Q Consensus 113 gRf~~~i~i~~P~-~~~r~~il~~~~~ 138 (362)
||...+.+..|. .++|.+|++.-..
T Consensus 208 -Rfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 208 -RFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred -hhcceeeccCCCCHHHHHHHHHHHHH
Confidence 999999998775 7889999987654
No 326
>KOG1968|consensus
Probab=87.50 E-value=1.8 Score=46.35 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=91.9
Q ss_pred cHHHHHHhhhCCcEEEEechhhhhhhcC-----c--hHHHHHHHH---HHHH-HcCC-eEEEeccccccccccCCCCCCC
Q psy6770 2 LLCTSFDTELVTAFIRVVGSEFVQKYLG-----E--GPRMVRDVF---RLAK-ENSP-AIIFIDEIDAIATKRFDAQTGA 69 (362)
Q Consensus 2 lLakaiA~e~~~~~~~v~~s~l~~~~~g-----e--se~~l~~~F---~~a~-~~~P-~II~iDeiD~l~~~r~~~~~~~ 69 (362)
..+.++|.++|..+++.+.++.-+++.. + +...|..-| .... .+.+ .||+|||+|-++..
T Consensus 372 ~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-------- 443 (871)
T KOG1968|consen 372 TAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-------- 443 (871)
T ss_pred hhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch--------
Confidence 4578899999999999999876554332 1 122233333 0001 1122 39999999987641
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCH
Q psy6770 70 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDL 148 (362)
Q Consensus 70 ~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl 148 (362)
+......+..+.. .....+|.+.|..+....-... |....|.|+.|+.+.+..-+...+...... ++-.+
T Consensus 444 dRg~v~~l~~l~~-------ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l 514 (871)
T KOG1968|consen 444 DRGGVSKLSSLCK-------KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVL 514 (871)
T ss_pred hhhhHHHHHHHHH-------hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHH
Confidence 1122344445543 2345578888887766663333 555789999999998887777666544332 23356
Q ss_pred HHHHhcCCCCcHhhHHHHHHHHH
Q psy6770 149 EDYVARPDRISGADINAICQEVI 171 (362)
Q Consensus 149 ~~la~~t~g~s~~di~~l~~~a~ 171 (362)
+++...+ ++||++....-.
T Consensus 515 ~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 515 EEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred HHHHHhc----ccCHHHHHHHHh
Confidence 7777665 778877765443
No 327
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=87.48 E-value=4.6 Score=34.38 Aligned_cols=87 Identities=22% Similarity=0.384 Sum_probs=47.7
Q ss_pred CcHHHHHHhhhC---CcEEEEechhhhhh-----hcCchH-------HHHHHHHHHHHHcCCeEEEeccccccccccCCC
Q psy6770 1 YLLCTSFDTELV---TAFIRVVGSEFVQK-----YLGEGP-------RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDA 65 (362)
Q Consensus 1 slLakaiA~e~~---~~~~~v~~s~l~~~-----~~gese-------~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~ 65 (362)
+++|++|-+... .||+.|+|+.+-.. .+|... ..-.-+|+.| .-..+||||||.+-+
T Consensus 36 ~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~Ld~I~~L~~----- 107 (168)
T PF00158_consen 36 ELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFLDEIEDLPP----- 107 (168)
T ss_dssp HHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEEETGGGS-H-----
T ss_pred HHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceEEeecchhhhHH-----
Confidence 368888887654 69999999876322 111100 0001233333 338999999998843
Q ss_pred CCCCcHHHHHHHHHHHHhcc--CCC----CCCCeEEEEEcCC
Q psy6770 66 QTGADREVQRILLELLNQMD--GFD----QTTNVKVIMATNR 101 (362)
Q Consensus 66 ~~~~~~~~~~~l~~lL~~ld--~l~----~~~~v~vi~tTn~ 101 (362)
.....+..+|+.-. .+. ...++-+|++|+.
T Consensus 108 ------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 108 ------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ------HHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 23455666665321 111 1236889999885
No 328
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=87.35 E-value=1.5 Score=38.71 Aligned_cols=65 Identities=29% Similarity=0.441 Sum_probs=38.3
Q ss_pred cCchHHHHHHHHHHHHHcC-C-eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 28 LGEGPRMVRDVFRLAKENS-P-AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 28 ~gese~~l~~~F~~a~~~~-P-~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.|.+++++=.++..+.... + .+++|||.|.-+ ++...+.+..++..... .++-+|.||+.|.-|
T Consensus 237 ~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~L----------Hp~~q~~l~~~l~~~~~----~~~QviitTHSp~il 302 (303)
T PF13304_consen 237 LSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHL----------HPSWQRKLIELLKELSK----KNIQVIITTHSPFIL 302 (303)
T ss_dssp --HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTS----------SHHHHHHHHHHHHHTGG----GSSEEEEEES-GGG-
T ss_pred CCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCC----------CHHHHHHHHHHHHhhCc----cCCEEEEeCccchhc
Confidence 3666777645555554443 3 999999999643 34344444455544432 467799999998765
Q ss_pred C
Q psy6770 106 D 106 (362)
Q Consensus 106 d 106 (362)
|
T Consensus 303 d 303 (303)
T PF13304_consen 303 D 303 (303)
T ss_dssp -
T ss_pred C
Confidence 4
No 329
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=87.28 E-value=3.1 Score=41.29 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=30.4
Q ss_pred cHHHHHHhh---hCCcEEEEechhhhhhh-----cCchHHHHHHHHHH--------HHHcCCeEEEeccccccc
Q psy6770 2 LLCTSFDTE---LVTAFIRVVGSEFVQKY-----LGEGPRMVRDVFRL--------AKENSPAIIFIDEIDAIA 59 (362)
Q Consensus 2 lLakaiA~e---~~~~~~~v~~s~l~~~~-----~gese~~l~~~F~~--------a~~~~P~II~iDeiD~l~ 59 (362)
++|+++... .+.+|+.++|..+-..+ +|.. +..|.. ........|||||+|.+-
T Consensus 172 ~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~----~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~ 241 (463)
T TIGR01818 172 LVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE----KGAFTGANTRRQGRFEQADGGTLFLDEIGDMP 241 (463)
T ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCC----CCCCCCcccCCCCcEEECCCCeEEEEchhhCC
Confidence 467777655 35699999997763321 1110 000100 112235789999999884
No 330
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.21 E-value=1.4 Score=45.15 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=60.5
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.+|.||..|+... +++++|++|+.++.|.+.+.- | -.++.|..++.++-...++.++.+.+.. ++-.+..+++.
T Consensus 134 A~NALLK~LEEpp--~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~ 208 (584)
T PRK14952 134 GFNALLKIVEEPP--EHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA 208 (584)
T ss_pred HHHHHHHHHhcCC--CCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4677887777544 478888888999999998876 7 3678888898888888888888765432 22234455554
Q ss_pred CCCCCHHHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEA 301 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a 301 (362)
+. -+..++.+++...
T Consensus 209 s~-GdlR~aln~Ldql 223 (584)
T PRK14952 209 GG-GSPRDTLSVLDQL 223 (584)
T ss_pred cC-CCHHHHHHHHHHH
Confidence 33 3445555555544
No 331
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=87.11 E-value=2.4 Score=39.49 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+-+.+... .--|++||++|.+-. ..-|.||.-++. +..++++|..|+.++.+.|
T Consensus 77 idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~--------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 77 IETPRAIKKQIWIHPYESPYKIYIIHEADRMTL--------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred HHHHHHHHHHHhhCccCCCceEEEEechhhcCH--------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcH
Confidence 44455554444322 235999999998842 334556665663 5678899999999999999
Q ss_pred cccCCCcceeEEEccCC
Q psy6770 108 ALLRPGRLDRKIEFPLP 124 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P 124 (362)
.+++ |+ ..+.|+.+
T Consensus 141 TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 141 TIRS--RS-LSIHIPME 154 (290)
T ss_pred HHHh--cc-eEEEccch
Confidence 9998 87 45566654
No 332
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=87.10 E-value=0.84 Score=39.77 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=41.5
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCC
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 124 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P 124 (362)
..++|+|||+..++++|....... ...+ +++.+. +..+.-++.+|-.|..+|+.+++ ..+..+.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~----~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKV----PEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T--------HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccc----hHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 569999999999999884421111 2334 444443 34467799999999999999987 88888777544
No 333
>PRK06921 hypothetical protein; Provisional
Probab=87.06 E-value=3 Score=38.42 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=32.6
Q ss_pred CcHHHHHHhhh----CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccc
Q psy6770 1 YLLCTSFDTEL----VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDA 57 (362)
Q Consensus 1 slLakaiA~e~----~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~ 57 (362)
|.|+.|||+++ |..++.++..+++..... ........++. -....+|+|||++.
T Consensus 131 ThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~-~~~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 131 THLLTAAANELMRKKGVPVLYFPFVEGFGDLKD-DFDLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred HHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH-HHHHHHHHHHH--hcCCCEEEEecccc
Confidence 56889999876 677888887776553211 11111222222 23468999999943
No 334
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=86.59 E-value=2.1 Score=45.21 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=62.2
Q ss_pred ccCCeEEEEecCC--CCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc-------CCCC-CCCCHHHHhhCCCCC
Q psy6770 220 NIGNLQVIMATNR--ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK-------MNLS-DEVDLEDYVARPDRI 289 (362)
Q Consensus 220 ~~~~v~vi~aTn~--~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~-------~~~~-~~~~~~~la~~~~g~ 289 (362)
+.+.+++|++|+. ...++++++. |. ..+.|+.++.++...+++.++.. ..+. ++--++.|++.+.|
T Consensus 134 E~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G- 209 (725)
T PRK13341 134 ENGTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG- 209 (725)
T ss_pred cCceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-
Confidence 3466778876643 3568999987 74 46889999999999999998862 1111 12235667766533
Q ss_pred CHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q psy6770 290 SGADINAICQEAGMHAVRENR--YIVLPKDFEKGYKK 324 (362)
Q Consensus 290 sgadi~~~~~~a~~~a~~~~~--~~v~~~~~~~a~~~ 324 (362)
...++.+++..+...+...+. ..++.+++.+++.+
T Consensus 210 D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 210 DARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 345555666655432221111 23677777777655
No 335
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.48 E-value=1.9 Score=43.85 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=65.8
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.++..|+... +.+.+|++|+.+..+.+.++. |. ..++|..++.++-...++..+.+.++. ++-.+..+++.
T Consensus 135 a~naLLK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~ 209 (546)
T PRK14957 135 SFNALLKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYH 209 (546)
T ss_pred HHHHHHHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4566776666433 567777777778888888665 66 778899899988888888877765443 22335666665
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
+. -+..++-+++..+... .+ ..++.+++.+.
T Consensus 210 s~-GdlR~alnlLek~i~~---~~-~~It~~~V~~~ 240 (546)
T PRK14957 210 AK-GSLRDALSLLDQAISF---CG-GELKQAQIKQM 240 (546)
T ss_pred cC-CCHHHHHHHHHHHHHh---cc-CCCCHHHHHHH
Confidence 53 3445555555544322 12 34566555543
No 336
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=86.39 E-value=1 Score=38.92 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=42.2
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHH
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI 267 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~ 267 (362)
.+.++..|+... .+.++|++||.++.|++++.. |. ..+.|..|+.++...+++..
T Consensus 113 ~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 113 ANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred HHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 456777666633 356677778888999999988 77 48999999999988887775
No 337
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=86.31 E-value=1.4 Score=35.84 Aligned_cols=97 Identities=25% Similarity=0.358 Sum_probs=44.5
Q ss_pred CcHHHHHHhhhCCcEEEEech-hhh-hhhcCc----hHHHHHHHHHHHHHcC---CeEEEeccccccccccCCCCCCCcH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGS-EFV-QKYLGE----GPRMVRDVFRLAKENS---PAIIFIDEIDAIATKRFDAQTGADR 71 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s-~l~-~~~~ge----se~~l~~~F~~a~~~~---P~II~iDeiD~l~~~r~~~~~~~~~ 71 (362)
|++|+++|+.+|..|..|..+ ++. +...|. ... .-|+.- .+ -.|+++|||-..-++
T Consensus 13 T~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~--~GPif~~ill~DEiNrappk---------- 77 (131)
T PF07726_consen 13 TTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFR--PGPIFTNILLADEINRAPPK---------- 77 (131)
T ss_dssp HHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEE--E-TT-SSEEEEETGGGS-HH----------
T ss_pred HHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEee--cChhhhceeeecccccCCHH----------
Confidence 478999999999999998775 332 111111 000 001000 11 259999998865332
Q ss_pred HHHHHHHHHHHhcc----C--CCCCCCeEEEEEcCCCC-----CCCccccCCCcc
Q psy6770 72 EVQRILLELLNQMD----G--FDQTTNVKVIMATNRAD-----TLDPALLRPGRL 115 (362)
Q Consensus 72 ~~~~~l~~lL~~ld----~--l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf 115 (362)
....+.+.+.+-. + ..-..+.+||+|-|..+ .++.+++. ||
T Consensus 78 -tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 78 -TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 2333444443311 1 11234588888888655 56666666 65
No 338
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=86.22 E-value=3.5 Score=42.80 Aligned_cols=117 Identities=23% Similarity=0.343 Sum_probs=79.7
Q ss_pred CeEEEEecCCC-----CCCCccccCCCCcceeEEec--CC-CHHHHHHHHHHHhccCCCC---CCCC---HHHHh----h
Q psy6770 223 NLQVIMATNRA-----DTLDPALLRPGRLDRKIEFP--LP-DRRQKRLVFSTITAKMNLS---DEVD---LEDYV----A 284 (362)
Q Consensus 223 ~v~vi~aTn~~-----~~lD~a~~RpgRfd~~i~~~--~P-~~~~r~~i~~~~l~~~~~~---~~~~---~~~la----~ 284 (362)
+..+|++-|+- ..+|+.++. -|....++. .| ..+.|.++|..+...+..+ +.++ +..|. +
T Consensus 276 d~klI~~Gn~~~l~~l~~~~~~r~~--g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R 353 (647)
T COG1067 276 DLKLILAGNREDLEDLHEPDRSRIE--GFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAAR 353 (647)
T ss_pred ceEEEeeCCHHHHHhhcccCHHHHh--hcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 46667766653 345666555 566656665 56 5688888888877433211 2223 22222 1
Q ss_pred CC-----CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCchHHHHHHHHhchH
Q psy6770 285 RP-----DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVRENRYIVLPK 341 (362)
Q Consensus 285 ~~-----~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (362)
.+ -..++.||.++++.|+..|..++..-++.+|++.|++.-.+......++|.+-.+
T Consensus 354 ~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~e~~l~e~~~~~~~ 415 (647)
T COG1067 354 RAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKRELREGQLAERYIEDIK 415 (647)
T ss_pred hccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 22 3457999999999999999999999999999999999988776666666655444
No 339
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=86.06 E-value=0.78 Score=43.82 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=46.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHH
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI 267 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~ 267 (362)
..|.+|+.|+. ...++++|..|++|+.|.|.++. |. ..+.|+.|+.++..+.+...
T Consensus 148 AaNaLLKtLEE--Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 148 AANALLKTLEE--PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHhcC--CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 35888888874 34678999999999999999888 88 68999999998888877653
No 340
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.01 E-value=2.1 Score=44.08 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=60.1
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.+|.|+..|+... +++++|.+||.++.|.+.++. |. ..+.|..++..+-...++.++++.++. ++-.+..+++.
T Consensus 135 a~naLLk~LEepp--~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~ 209 (576)
T PRK14965 135 AFNALLKTLEEPP--PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARK 209 (576)
T ss_pred HHHHHHHHHHcCC--CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3577777776543 578888899999999998876 65 467788788888777777777655443 23346667776
Q ss_pred CCCCCHHHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEA 301 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a 301 (362)
+.| +-.++.+.+..+
T Consensus 210 a~G-~lr~al~~Ldql 224 (576)
T PRK14965 210 GDG-SMRDSLSTLDQV 224 (576)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 665 344444444433
No 341
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=85.95 E-value=3.7 Score=40.56 Aligned_cols=110 Identities=20% Similarity=0.357 Sum_probs=57.8
Q ss_pred cHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHH---------------HHHcCCeEEEeccccccccccC
Q psy6770 2 LLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRL---------------AKENSPAIIFIDEIDAIATKRF 63 (362)
Q Consensus 2 lLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~---------------a~~~~P~II~iDeiD~l~~~r~ 63 (362)
.+|+++-... +.+|+.++|..+-..+. -..+|-. ........|||||+|.+-..
T Consensus 177 ~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-- 248 (445)
T TIGR02915 177 VLARALHQLSDRKDKRFVAINCAAIPENLL------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLN-- 248 (445)
T ss_pred HHHHHHHHhCCcCCCCeEEEECCCCChHHH------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHH--
Confidence 4677776554 46999999987632211 1112211 11123578999999988432
Q ss_pred CCCCCCcHHHHHHHHHHHHhc--cCCC----CCCCeEEEEEcCCCC-------CCCccccCCCcceeEEEccCCCHHHHH
Q psy6770 64 DAQTGADREVQRILLELLNQM--DGFD----QTTNVKVIMATNRAD-------TLDPALLRPGRLDRKIEFPLPDRRQKR 130 (362)
Q Consensus 64 ~~~~~~~~~~~~~l~~lL~~l--d~l~----~~~~v~vi~tTn~~~-------~ld~al~r~gRf~~~i~i~~P~~~~r~ 130 (362)
....+..++..- ..+. ...++-+|++|+..- ...+.+.. |+ ..+.+.+|...+|.
T Consensus 249 ---------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~ 316 (445)
T TIGR02915 249 ---------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRD 316 (445)
T ss_pred ---------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhch
Confidence 233444444321 1111 112567888877541 22232322 33 23567777777776
Q ss_pred H
Q psy6770 131 L 131 (362)
Q Consensus 131 ~ 131 (362)
+
T Consensus 317 ~ 317 (445)
T TIGR02915 317 G 317 (445)
T ss_pred h
Confidence 5
No 342
>PRK06526 transposase; Provisional
Probab=85.94 E-value=1.7 Score=39.70 Aligned_cols=86 Identities=10% Similarity=0.197 Sum_probs=47.8
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCc-hHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGE-GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~ge-se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|.||.+|+.++ |..++.++.++++...... ....+...++. -..+.+|+|||++.+... ......
T Consensus 112 ThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~~~---------~~~~~~ 180 (254)
T PRK06526 112 THLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIPFE---------PEAANL 180 (254)
T ss_pred HHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCCCC---------HHHHHH
Confidence 46788887764 6677777777766543210 01112222222 234689999999976422 223345
Q ss_pred HHHHHHhccCCCCCCCeEEEEEcCCC
Q psy6770 77 LLELLNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 77 l~~lL~~ld~l~~~~~v~vi~tTn~~ 102 (362)
+.++++...+ . ..+|.|||.+
T Consensus 181 L~~li~~r~~---~--~s~IitSn~~ 201 (254)
T PRK06526 181 FFQLVSSRYE---R--ASLIVTSNKP 201 (254)
T ss_pred HHHHHHHHHh---c--CCEEEEcCCC
Confidence 6666654321 1 2378888876
No 343
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.69 E-value=7.3 Score=38.08 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=89.6
Q ss_pred hhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCC---ccccCCCCcceeEE--ecCCCHHHHHHHHHHHhccCCC--CC
Q psy6770 203 QKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLD---PALLRPGRLDRKIE--FPLPDRRQKRLVFSTITAKMNL--SD 275 (362)
Q Consensus 203 ~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD---~a~~RpgRfd~~i~--~~~P~~~~r~~i~~~~l~~~~~--~~ 275 (362)
+|...-.++-...+.+.+.++-+|+.+-..|..+. |-+.. ||+-.+. +..|+.+.|..|++......++ .+
T Consensus 189 gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ 266 (408)
T COG0593 189 GKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPD 266 (408)
T ss_pred CChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 33333344555556666666667777766777654 66666 9877655 6679999999999996654433 33
Q ss_pred CCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhh
Q psy6770 276 EVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEK 345 (362)
Q Consensus 276 ~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 345 (362)
++ ..-+|... .-+..+++.++.+....+...++ .+|...+.++++....... ...+..++...+++.
T Consensus 267 ev-~~~la~~~-~~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~~~itie~I~~~Va~~y~ 334 (408)
T COG0593 267 EV-LEFLAKRL-DRNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRAGEKITIEDIQKIVAEYYN 334 (408)
T ss_pred HH-HHHHHHHh-hccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcccccCCHHHHHHHHHHHhC
Confidence 33 44455542 34678888888888888777664 8899999888888766422 333444444444443
No 344
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.29 E-value=3.2 Score=39.51 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=48.7
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCc---hHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGE---GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~ge---se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|.|+.|||+++ |..++.++..+++...... ........++.. ....+|+|||+.....+ ....
T Consensus 197 ThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~t---------~~~~ 265 (329)
T PRK06835 197 TFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKIT---------EFSK 265 (329)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCCC---------HHHH
Confidence 57899999886 7788999998887643210 001111112322 24589999999765321 2223
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEcCCC
Q psy6770 75 RILLELLNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 75 ~~l~~lL~~ld~l~~~~~v~vi~tTn~~ 102 (362)
..+-.+++.--. .+-.+|.|||.+
T Consensus 266 ~~Lf~iin~R~~----~~k~tIiTSNl~ 289 (329)
T PRK06835 266 SELFNLINKRLL----RQKKMIISTNLS 289 (329)
T ss_pred HHHHHHHHHHHH----CCCCEEEECCCC
Confidence 344444443211 123377888863
No 345
>PRK08939 primosomal protein DnaI; Reviewed
Probab=85.02 E-value=1.1 Score=42.12 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=50.2
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCc-hHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHH-H
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGE-GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ-R 75 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~ge-se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~-~ 75 (362)
|.|+.|||+++ |.+...+..++++...... ....+...++.. ....+|+|||+..-- .+.... .
T Consensus 170 ThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e~---------~s~~~~~~ 238 (306)
T PRK08939 170 SYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAEQ---------MSSWVRDE 238 (306)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCcc---------ccHHHHHH
Confidence 57899999988 7888888888776543211 011123333333 245899999986532 112222 3
Q ss_pred HHHHHHH-hccCCCCCCCeEEEEEcCCC
Q psy6770 76 ILLELLN-QMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 76 ~l~~lL~-~ld~l~~~~~v~vi~tTn~~ 102 (362)
++..+++ .+. .+..+|.|||.+
T Consensus 239 ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 239 VLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred HHHHHHHHHHH-----CCCeEEEECCCC
Confidence 4455543 222 345689999975
No 346
>KOG2028|consensus
Probab=84.76 E-value=4.8 Score=38.61 Aligned_cols=104 Identities=22% Similarity=0.246 Sum_probs=64.8
Q ss_pred ccCCeEEEEec--CCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhc----------cCCCC----CCCCHHHHh
Q psy6770 220 NIGNLQVIMAT--NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA----------KMNLS----DEVDLEDYV 283 (362)
Q Consensus 220 ~~~~v~vi~aT--n~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~----------~~~~~----~~~~~~~la 283 (362)
+.+.|++|+|| |--..|..|++- |.-..+-=.+| .+.-..|+..-+. .++.. ++--++-++
T Consensus 247 E~G~I~lIGATTENPSFqln~aLlS--RC~VfvLekL~-~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla 323 (554)
T KOG2028|consen 247 ENGDITLIGATTENPSFQLNAALLS--RCRVFVLEKLP-VNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLA 323 (554)
T ss_pred ccCceEEEecccCCCccchhHHHHh--ccceeEeccCC-HHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHH
Confidence 46788888876 334478999988 65433333343 4444555554221 11111 111256688
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHh
Q psy6770 284 ARPDRISGADINAICQEAGMHAVREN---RYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 284 ~~~~g~sgadi~~~~~~a~~~a~~~~---~~~v~~~~~~~a~~~~~ 326 (362)
..++|=+-+-+..+=-.+.+.+.|++ +.+++.+|+.+++.+-.
T Consensus 324 ~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 324 YLSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HhcCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhcc
Confidence 88888877777666555567777766 35899999999988754
No 347
>PRK14700 recombination factor protein RarA; Provisional
Probab=84.72 E-value=3.5 Score=38.44 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=71.5
Q ss_pred ccCCeEEEEec--CCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCC-CC---CCC---CHHHHhhCCCCCC
Q psy6770 220 NIGNLQVIMAT--NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN-LS---DEV---DLEDYVARPDRIS 290 (362)
Q Consensus 220 ~~~~v~vi~aT--n~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~-~~---~~~---~~~~la~~~~g~s 290 (362)
++|.+++|+|| |--..+.+|++- |. +.+.+...+.+.-..+++.-+.... .. -.+ -++.|++ ++
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~----~a 77 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN----YN 77 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH----hc
Confidence 56788888866 334589999998 87 7788888899999999998885411 11 112 2444554 56
Q ss_pred HHHHHHHHHHHHHHHH-Hhc--CCCCCHHHHHHHHHHHhCchHHHHHHHHhchHHHhhh
Q psy6770 291 GADINAICQEAGMHAV-REN--RYIVLPKDFEKGYKKCAGMHAVRENRYIVLPKDFEKG 346 (362)
Q Consensus 291 gadi~~~~~~a~~~a~-~~~--~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (362)
++|.+...+---+.+. ..+ ...|+.+++++.+.+.....+..-+++=.+-.-|-|+
T Consensus 78 ~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KS 136 (300)
T PRK14700 78 EGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKS 136 (300)
T ss_pred CCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHH
Confidence 6687766554333221 111 1238888888887665443333323333333344433
No 348
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=83.93 E-value=4.2 Score=42.10 Aligned_cols=115 Identities=19% Similarity=0.314 Sum_probs=64.0
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhc----cCC------------CCCCCeEEEEEcCCC--CCCCcc
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM----DGF------------DQTTNVKVIMATNRA--DTLDPA 108 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l----d~l------------~~~~~v~vi~tTn~~--~~ld~a 108 (362)
..++||||++.+-+ .....+..+|+.= .+. .-..++.+|+++|.. ..+|+.
T Consensus 218 gGtL~Ldei~~L~~-----------~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~ 286 (608)
T TIGR00764 218 KGVLYIDEIKTMPL-----------EVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPA 286 (608)
T ss_pred CCEEEEEChHhCCH-----------HHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHH
Confidence 37999999998842 2233444444321 010 012357788888864 579999
Q ss_pred ccCCCcce---eEEEcc--CCC-HHHHHHHHHHH---HccCCCCCcCCH---HHHH---hcCC------CCcHhhHHHHH
Q psy6770 109 LLRPGRLD---RKIEFP--LPD-RRQKRLVFSTI---TAKMNLSDEVDL---EDYV---ARPD------RISGADINAIC 167 (362)
Q Consensus 109 l~r~gRf~---~~i~i~--~P~-~~~r~~il~~~---~~~~~~~~~~dl---~~la---~~t~------g~s~~di~~l~ 167 (362)
++. ||+ ..++++ .|+ .+.+..+++.. ++..+..+.++- ..+. .+.. ..+..+|.+++
T Consensus 287 l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~ll 364 (608)
T TIGR00764 287 LRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLV 364 (608)
T ss_pred HHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 999 999 666664 344 55555554432 222211122332 2222 1111 24568899999
Q ss_pred HHHHHhh
Q psy6770 168 QEVIMAT 174 (362)
Q Consensus 168 ~~a~~~~ 174 (362)
++|...+
T Consensus 365 R~A~~iA 371 (608)
T TIGR00764 365 RAAGDIA 371 (608)
T ss_pred HHHHHHH
Confidence 9885544
No 349
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=83.86 E-value=5 Score=39.88 Aligned_cols=113 Identities=25% Similarity=0.418 Sum_probs=60.9
Q ss_pred cHHHHHHhhhCC---cEEEEechhhhhh-----hcCchHH-------HHHHHHHHHHHcCCeEEEeccccccccccCCCC
Q psy6770 2 LLCTSFDTELVT---AFIRVVGSEFVQK-----YLGEGPR-------MVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQ 66 (362)
Q Consensus 2 lLakaiA~e~~~---~~~~v~~s~l~~~-----~~gese~-------~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~ 66 (362)
++|++|-..... ||+.|||..+-.. .+|...- .=.-.|+.|. -..+|+|||..+-.
T Consensus 179 lvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~mpl------ 249 (464)
T COG2204 179 LVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEMPL------ 249 (464)
T ss_pred HHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccCCH------
Confidence 356666655554 9999999755321 2221000 0001233322 37999999997742
Q ss_pred CCCcHHHHHHHHHHHHh--ccCCCC----CCCeEEEEEcCCCCCCCccccCCCcce-------eEEEccCCCHHHHHH
Q psy6770 67 TGADREVQRILLELLNQ--MDGFDQ----TTNVKVIMATNRADTLDPALLRPGRLD-------RKIEFPLPDRRQKRL 131 (362)
Q Consensus 67 ~~~~~~~~~~l~~lL~~--ld~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~ 131 (362)
....-+..+|++ +..+.. +-+|=||++||.. +...+ ..|+|. .++.+.+|...+|.+
T Consensus 250 -----~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d--L~~~v-~~G~FReDLyyRLnV~~i~iPpLRER~E 319 (464)
T COG2204 250 -----ELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD--LEEEV-AAGRFREDLYYRLNVVPLRLPPLRERKE 319 (464)
T ss_pred -----HHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC--HHHHH-HcCCcHHHHHhhhccceecCCcccccch
Confidence 223334444432 222211 1247799999963 43333 235653 456788888877766
No 350
>PF12846 AAA_10: AAA-like domain
Probab=83.83 E-value=1.7 Score=40.04 Aligned_cols=71 Identities=31% Similarity=0.391 Sum_probs=52.5
Q ss_pred cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC-----ccccCCCcceeEE
Q psy6770 45 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD-----PALLRPGRLDRKI 119 (362)
Q Consensus 45 ~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld-----~al~r~gRf~~~i 119 (362)
..|.+++|||++.+.... .....+..++.+.. +.++.++.+|..|.+++ ++++. -+...|
T Consensus 219 ~~~~~i~iDEa~~~~~~~---------~~~~~~~~~~~~~R----k~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~i 283 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNP---------SGAEFLDELLREGR----KYGVGLILATQSPSDLPKSPIEDAILA--NCNTKI 283 (304)
T ss_pred CceEEEEeCCcccccccc---------chhhhhhHHHHHHH----hcCCEEEEeeCCHHHHhccchHHHHHH--hCCcEE
Confidence 468999999999987552 12345666665544 45778999999999998 77877 777888
Q ss_pred EccCCCHHHHH
Q psy6770 120 EFPLPDRRQKR 130 (362)
Q Consensus 120 ~i~~P~~~~r~ 130 (362)
.+..++.+...
T Consensus 284 ~~~~~~~~~~~ 294 (304)
T PF12846_consen 284 IFRLEDSDDAE 294 (304)
T ss_pred EecCChHHHHH
Confidence 88888766655
No 351
>KOG0478|consensus
Probab=83.53 E-value=43 Score=34.90 Aligned_cols=76 Identities=8% Similarity=0.011 Sum_probs=46.2
Q ss_pred ecCCCHHHHHHHHHHHhccCCCC---CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 252 FPLPDRRQKRLVFSTITAKMNLS---DEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 252 ~~~P~~~~r~~i~~~~l~~~~~~---~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
++.-+-++...+++.-++....+ ..+|...++-.-.-.++-+.+.++..-...+....+..++...+..|+...+.
T Consensus 712 ve~~dV~eA~~l~R~aL~~~a~d~~tg~vd~~~l~tg~s~~~~~~~~~~~~ai~~~l~~~~~~~~~~~~~~~al~~l~~ 790 (804)
T KOG0478|consen 712 VEEIDVEEAVRLLREALKQSATDPATGKVDMDILATGNSVVSRKKVEILGGAILKMLKDESQKGIEEEMFLEALEELQK 790 (804)
T ss_pred cchhhHHHHHHHHHHHhcccCCCCCCCceeehhhhhcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 33446678888888888765443 45677777765556667777777665555554332334445555566655543
No 352
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=83.31 E-value=16 Score=33.95 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=76.2
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHH
Q psy6770 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEA 301 (362)
Q Consensus 223 ~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a 301 (362)
+.-+|+||-+.-.|-.-+.- ||.....+.+=+.++-..|++.....+.+. .+-....+|+++.|.- .=-..++++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP-RIAnRLLrRV 227 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP-RIANRLLRRV 227 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc-HHHHHHHHHH
Confidence 57789999999999998888 999999999999999999999988777665 3334667888877753 3333455666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 302 GMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 302 ~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
.-.|.-.+...|+.+-..+|++...
T Consensus 228 RDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 228 RDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHhC
Confidence 6666556667777777777777654
No 353
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=83.31 E-value=5.8 Score=38.46 Aligned_cols=121 Identities=19% Similarity=0.204 Sum_probs=67.8
Q ss_pred ccCCeEEEEec-CCC-CCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh--ccCCCC------CCCCHHHHhhCCCCC
Q psy6770 220 NIGNLQVIMAT-NRA-DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT--AKMNLS------DEVDLEDYVARPDRI 289 (362)
Q Consensus 220 ~~~~v~vi~aT-n~~-~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l--~~~~~~------~~~~~~~la~~~~g~ 289 (362)
+++.|++|+|| -.| ..|.+|++- |- .++.+...+.++-..+++.-+ ....++ ++--++.++. .
T Consensus 129 E~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~----~ 201 (436)
T COG2256 129 ENGTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR----L 201 (436)
T ss_pred cCCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHH----h
Confidence 46778888865 334 489999987 64 345555667777777777733 222222 1112444555 4
Q ss_pred CHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhCchHHHHHHHHhchHHHhhhc
Q psy6770 290 SGADINAICQEAGMHAVREN-RYIVLPKDFEKGYKKCAGMHAVRENRYIVLPKDFEKGY 347 (362)
Q Consensus 290 sgadi~~~~~~a~~~a~~~~-~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (362)
|.+|.+.+.+-.-+.+.... ...++.+.+++.+.+-.+..+..-+.+=.+-..|-|+.
T Consensus 202 s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSv 260 (436)
T COG2256 202 SNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSV 260 (436)
T ss_pred cCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhh
Confidence 45577776665544333221 22445788888888777655544333333444444433
No 354
>PLN03025 replication factor C subunit; Provisional
Probab=82.90 E-value=2.8 Score=39.57 Aligned_cols=100 Identities=10% Similarity=0.087 Sum_probs=61.0
Q ss_pred hhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCC
Q psy6770 209 STITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPD 287 (362)
Q Consensus 209 ~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~ 287 (362)
+.++..|+.+. ....+|.+||.++.+.+++.. |. ..+.|+.|+.++....++..+.+-++. ++..++.++..+.
T Consensus 117 ~aL~~~lE~~~--~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~ 191 (319)
T PLN03025 117 QALRRTMEIYS--NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD 191 (319)
T ss_pred HHHHHHHhccc--CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 33444444433 234567788888899888877 76 478899999999999888888654432 2234666666543
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy6770 288 RISGADINAICQEAGMHAVRENRYIVLPKDFE 319 (362)
Q Consensus 288 g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~ 319 (362)
.|++.+++.--... .+...++.+++.
T Consensus 192 ----gDlR~aln~Lq~~~--~~~~~i~~~~v~ 217 (319)
T PLN03025 192 ----GDMRQALNNLQATH--SGFGFVNQENVF 217 (319)
T ss_pred ----CCHHHHHHHHHHHH--hcCCCCCHHHHH
Confidence 46665554433211 123345555543
No 355
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.68 E-value=5.6 Score=41.03 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=66.2
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
++.|+..|+... .++++|++|+.++.+.+.+.. |.. ++.|..++..+-...++....+.++. ++-.+..|++.+
T Consensus 137 ~naLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s 211 (585)
T PRK14950 137 FNALLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAA 211 (585)
T ss_pred HHHHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 566666665544 456777777778888887765 654 57888888888888888877654432 222366777776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
.| +..++.+.+...+.+ +...|+.+++..
T Consensus 212 ~G-dlr~al~~LekL~~y----~~~~It~e~V~~ 240 (585)
T PRK14950 212 TG-SMRDAENLLQQLATT----YGGEISLSQVQS 240 (585)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCCCHHHHHH
Confidence 65 666666666654332 234566666544
No 356
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.41 E-value=3.6 Score=41.81 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=68.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.+|.++..|+... +++.+|++|+.++.+.+.++. |. ..+.|..|+.++-...++..+.+-++. ++..+..+++.
T Consensus 135 a~naLLK~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~ 209 (527)
T PRK14969 135 AFNAMLKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARA 209 (527)
T ss_pred HHHHHHHHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3567777666643 567888888888888887655 65 678888898888888888877654433 22235666766
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
+.| +..++.+++..+... +...|+.+++...+
T Consensus 210 s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 210 AAG-SMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 543 455666666655432 34456666555443
No 357
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=81.60 E-value=11 Score=36.24 Aligned_cols=98 Identities=20% Similarity=0.194 Sum_probs=67.7
Q ss_pred EEEEecCC------------CCCCCccccCCCCcceeEEec-CC-CHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCC
Q psy6770 225 QVIMATNR------------ADTLDPALLRPGRLDRKIEFP-LP-DRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRI 289 (362)
Q Consensus 225 ~vi~aTn~------------~~~lD~a~~RpgRfd~~i~~~-~P-~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~ 289 (362)
++|+|||+ |+-|+..++- | .+-+. .| +.++-++|++.-...-.+. ++-.++.|+....-.
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R---llII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~et 396 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--R---LLIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEET 396 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--h---eeEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhh
Confidence 67778886 5667777665 4 33332 45 5677788888877544433 333577788776655
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 290 SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 290 sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
|=.=--++..-|.+.|-+.+...|..+|++.|..-+..
T Consensus 397 SLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D 434 (450)
T COG1224 397 SLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLD 434 (450)
T ss_pred hHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhh
Confidence 55555577788888998989999999999998765543
No 358
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=81.43 E-value=1.5 Score=41.17 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=38.0
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhc
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA 269 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~ 269 (362)
+++.+|++||.++.+++++.+ |+. .+.|+.|+.+++..+++.++.
T Consensus 130 ~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 130 KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHH
Confidence 456888899999999999998 995 688999999999988776543
No 359
>PRK15115 response regulator GlrR; Provisional
Probab=81.30 E-value=10 Score=37.41 Aligned_cols=110 Identities=21% Similarity=0.388 Sum_probs=59.2
Q ss_pred cHHHHHHhh---hCCcEEEEechhhhhhhcCchHHHHHHHHHHH---------------HHcCCeEEEeccccccccccC
Q psy6770 2 LLCTSFDTE---LVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLA---------------KENSPAIIFIDEIDAIATKRF 63 (362)
Q Consensus 2 lLakaiA~e---~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a---------------~~~~P~II~iDeiD~l~~~r~ 63 (362)
++|+++... .+.+|+.++|..+-.... -..+|-.+ .......|||||+|.+-..
T Consensus 172 ~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-- 243 (444)
T PRK15115 172 ILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP-- 243 (444)
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHH--
Confidence 467777655 347999999987632211 11122111 1123478999999988532
Q ss_pred CCCCCCcHHHHHHHHHHHHhc--cCCCC----CCCeEEEEEcCCCCCCCccccCCCcce-------eEEEccCCCHHHHH
Q psy6770 64 DAQTGADREVQRILLELLNQM--DGFDQ----TTNVKVIMATNRADTLDPALLRPGRLD-------RKIEFPLPDRRQKR 130 (362)
Q Consensus 64 ~~~~~~~~~~~~~l~~lL~~l--d~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~ 130 (362)
....+..++..- ..+.. ..++-+|+||+.. ++..+. .|+|. ..+.+.+|...+|.
T Consensus 244 ---------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~-~~~f~~~l~~~l~~~~i~lPpLr~R~ 311 (444)
T PRK15115 244 ---------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMA-RGEFREDLYYRLNVVSLKIPALAERT 311 (444)
T ss_pred ---------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHH-cCCccHHHHHhhceeeecCCChHhcc
Confidence 233344444321 11111 1257788888853 443333 34552 24567778877775
Q ss_pred H
Q psy6770 131 L 131 (362)
Q Consensus 131 ~ 131 (362)
+
T Consensus 312 e 312 (444)
T PRK15115 312 E 312 (444)
T ss_pred c
Confidence 4
No 360
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=81.04 E-value=5.1 Score=36.73 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccC
Q psy6770 32 PRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLR 111 (362)
Q Consensus 32 e~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r 111 (362)
+...+.+.+..+.. +++|++|+++... .+..+...+.. ...+.-+|.||.... +-..+.
T Consensus 88 ~~~~~~l~~~L~~~-~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~~~kilvTTR~~~-v~~~~~- 146 (287)
T PF00931_consen 88 EELQDQLRELLKDK-RCLLVLDDVWDEE----------------DLEELREPLPS--FSSGSKILVTTRDRS-VAGSLG- 146 (287)
T ss_dssp HHHHHHHHHHHCCT-SEEEEEEEE-SHH----------------HH-------HC--HHSS-EEEEEESCGG-GGTTHH-
T ss_pred ccccccchhhhccc-cceeeeeeecccc----------------ccccccccccc--ccccccccccccccc-cccccc-
Confidence 34444455544444 8999999988542 12222211111 123455777877643 221111
Q ss_pred CCcceeEEEccCCCHHHHHHHHHHHHccCCC---C-CcCCHHHHHhcCCCC
Q psy6770 112 PGRLDRKIEFPLPDRRQKRLVFSTITAKMNL---S-DEVDLEDYVARPDRI 158 (362)
Q Consensus 112 ~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~---~-~~~dl~~la~~t~g~ 158 (362)
.-...++++..+.++-.+++......... . .......++..+.|+
T Consensus 147 --~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 147 --GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp --SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred --ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11578999999999999999888765431 1 111245677777664
No 361
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=80.54 E-value=3.8 Score=42.58 Aligned_cols=115 Identities=16% Similarity=0.245 Sum_probs=70.3
Q ss_pred CeEEEEecCCC--CCCCccccCCCCcc---eeEEec--CCC-HHHHHHHHHHHhccCCC---CCCCCHHH---HhhC---
Q psy6770 223 NLQVIMATNRA--DTLDPALLRPGRLD---RKIEFP--LPD-RRQKRLVFSTITAKMNL---SDEVDLED---YVAR--- 285 (362)
Q Consensus 223 ~v~vi~aTn~~--~~lD~a~~RpgRfd---~~i~~~--~P~-~~~r~~i~~~~l~~~~~---~~~~~~~~---la~~--- 285 (362)
++-||++||.. ..+||++.. ||. ..++|. .|+ .+.+..+++.+-..... ...++-+. |.+.
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 56889999884 577999988 886 455544 232 34444444433322211 12333332 2221
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCchHHHHHHHHhc
Q psy6770 286 PDR------ISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVRENRYIVL 339 (362)
Q Consensus 286 ~~g------~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (362)
..| +.-.+|..++++|...|..++...++.+|+.+|+...........++|.+-
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~~~~i~~~~~~~~l~~ 414 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKIARSIEQQLADRYIER 414 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHhhhhhhHHHHHHHhCC
Confidence 111 346899999999999998888899999999999865433333444555443
No 362
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=80.10 E-value=7.6 Score=38.65 Aligned_cols=153 Identities=17% Similarity=0.259 Sum_probs=75.1
Q ss_pred cHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHH---------------HHcCCeEEEeccccccccccC
Q psy6770 2 LLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLA---------------KENSPAIIFIDEIDAIATKRF 63 (362)
Q Consensus 2 lLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a---------------~~~~P~II~iDeiD~l~~~r~ 63 (362)
++|++|.... +.+|+.++|+.+...+ .-..+|... .......+||||+|.+-..
T Consensus 176 ~lA~~ih~~s~~~~~~~i~i~c~~~~~~~------~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~-- 247 (469)
T PRK10923 176 LVAHALHRHSPRAKAPFIALNMAAIPKDL------IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD-- 247 (469)
T ss_pred HHHHHHHhcCCCCCCCeEeeeCCCCCHHH------HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH--
Confidence 5778877765 4699999998763221 111222211 1112468999999988532
Q ss_pred CCCCCCcHHHHHHHHHHHHhcc--CCCC----CCCeEEEEEcCCCC-------CCCccccCCCcceeEEEccCCCHHHHH
Q psy6770 64 DAQTGADREVQRILLELLNQMD--GFDQ----TTNVKVIMATNRAD-------TLDPALLRPGRLDRKIEFPLPDRRQKR 130 (362)
Q Consensus 64 ~~~~~~~~~~~~~l~~lL~~ld--~l~~----~~~v~vi~tTn~~~-------~ld~al~r~gRf~~~i~i~~P~~~~r~ 130 (362)
....+..+++.-. .... ..++-+|+||+..- .+.+.+.. ||. .+.+.+|...+|.
T Consensus 248 ---------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~ 315 (469)
T PRK10923 248 ---------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERR 315 (469)
T ss_pred ---------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccch
Confidence 2334444443211 1111 12467788877531 23344444 442 3455566655554
Q ss_pred H----HHHHHHccCC----CC-CcCC---HHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 131 L----VFSTITAKMN----LS-DEVD---LEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 131 ~----il~~~~~~~~----~~-~~~d---l~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
+ +++.++.... .. ..++ +..|....=--...+++++++.++..+
T Consensus 316 ~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 316 EDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 3 5555554321 10 0111 222333222234556677776666543
No 363
>PRK13531 regulatory ATPase RavA; Provisional
Probab=80.06 E-value=18 Score=36.22 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=61.6
Q ss_pred EEEEecCCCC---CCCccccCCCCcceeEEecCCC-HHHHHHHHHHHhcc--CCC--CCCCC------------------
Q psy6770 225 QVIMATNRAD---TLDPALLRPGRLDRKIEFPLPD-RRQKRLVFSTITAK--MNL--SDEVD------------------ 278 (362)
Q Consensus 225 ~vi~aTn~~~---~lD~a~~RpgRfd~~i~~~~P~-~~~r~~i~~~~l~~--~~~--~~~~~------------------ 278 (362)
++++|||... ...+|++- ||-.++.+|+|+ .++-.+|+...... .+. ..-+.
T Consensus 149 fiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d 226 (498)
T PRK13531 149 LLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPD 226 (498)
T ss_pred EEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCH
Confidence 5566667321 12348999 998899999997 45556677653211 111 01111
Q ss_pred -----HHHHhh---CC---CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 279 -----LEDYVA---RP---DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 279 -----~~~la~---~~---~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
+-.|+. .+ ...|..--..+++-|.-.|+.+|+..|+++|+. .+..+
T Consensus 227 ~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~v 283 (498)
T PRK13531 227 HVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDC 283 (498)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHH
Confidence 112222 12 237888888888888888999999999999998 54443
No 364
>PRK09862 putative ATP-dependent protease; Provisional
Probab=79.34 E-value=4.6 Score=40.71 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~ 324 (362)
-|+|......+++-|.-.|-.++++.|+.+|+.+|+.-
T Consensus 454 ~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 454 LGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 46888889999999999999999999999999999874
No 365
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=78.82 E-value=1.1 Score=36.50 Aligned_cols=71 Identities=24% Similarity=0.446 Sum_probs=39.3
Q ss_pred cHHHHHHhhhCC---cEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHH
Q psy6770 2 LLCTSFDTELVT---AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILL 78 (362)
Q Consensus 2 lLakaiA~e~~~---~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~ 78 (362)
++|++|....+. +|+.+++...- .++++.+ .+..+||+|+|.+-. .....+.
T Consensus 36 ~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~-----------~~Q~~L~ 90 (138)
T PF14532_consen 36 LLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP-----------EAQRRLL 90 (138)
T ss_dssp HHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H-----------HHHHHHH
T ss_pred HHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH-----------HHHHHHH
Confidence 355666555543 55555555432 3344444 668999999998843 2345566
Q ss_pred HHHHhccCCCCCCCeEEEEEcCC
Q psy6770 79 ELLNQMDGFDQTTNVKVIMATNR 101 (362)
Q Consensus 79 ~lL~~ld~l~~~~~v~vi~tTn~ 101 (362)
.++...+ ..++-+|++++.
T Consensus 91 ~~l~~~~----~~~~RlI~ss~~ 109 (138)
T PF14532_consen 91 DLLKRQE----RSNVRLIASSSQ 109 (138)
T ss_dssp HHHHHCT----TTTSEEEEEECC
T ss_pred HHHHhcC----CCCeEEEEEeCC
Confidence 6665532 334455655553
No 366
>PRK09862 putative ATP-dependent protease; Provisional
Probab=77.83 E-value=13 Score=37.52 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCC---------------------CCCccccCCCCcceeEEecCCCHH
Q psy6770 222 GNLQVIMATNRAD---------------------TLDPALLRPGRLDRKIEFPLPDRR 258 (362)
Q Consensus 222 ~~v~vi~aTn~~~---------------------~lD~a~~RpgRfd~~i~~~~P~~~ 258 (362)
.++.+|+|+|... .|..+++- |||.++.++.|+.+
T Consensus 336 a~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 336 ARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 3578999999742 46778898 99999999999765
No 367
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=77.79 E-value=5.6 Score=40.48 Aligned_cols=113 Identities=25% Similarity=0.400 Sum_probs=60.4
Q ss_pred cHHHHHHhh-----------hCCcEEEEechhhhhh-----hcCchHH--------HHHHHHHHHHHcCCeEEEeccccc
Q psy6770 2 LLCTSFDTE-----------LVTAFIRVVGSEFVQK-----YLGEGPR--------MVRDVFRLAKENSPAIIFIDEIDA 57 (362)
Q Consensus 2 lLakaiA~e-----------~~~~~~~v~~s~l~~~-----~~gese~--------~l~~~F~~a~~~~P~II~iDeiD~ 57 (362)
++|++|-+. .+.||+.|+|+.+-.. .+|..+. .-..+|+.|. ...||||||+.
T Consensus 257 ~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~ 333 (538)
T PRK15424 257 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGE 333 (538)
T ss_pred HHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHh
Confidence 578888665 5579999999876322 1221000 0001333332 37899999998
Q ss_pred cccccCCCCCCCcHHHHHHHHHHHHhcc--CCCC----CCCeEEEEEcCCCCCCCccccCCCccee-------EEEccCC
Q psy6770 58 IATKRFDAQTGADREVQRILLELLNQMD--GFDQ----TTNVKVIMATNRADTLDPALLRPGRLDR-------KIEFPLP 124 (362)
Q Consensus 58 l~~~r~~~~~~~~~~~~~~l~~lL~~ld--~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~~-------~i~i~~P 124 (362)
+-.. ....+..+|++-. .+.. ..++-+|++||.. +. .+...|+|.. .+.+.+|
T Consensus 334 Lp~~-----------~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lP 399 (538)
T PRK15424 334 MPLP-----------LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLP 399 (538)
T ss_pred CCHH-----------HHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCC
Confidence 7422 2344444554311 1111 1245688888754 22 2223345542 4677778
Q ss_pred CHHHHHH
Q psy6770 125 DRRQKRL 131 (362)
Q Consensus 125 ~~~~r~~ 131 (362)
...+|.+
T Consensus 400 PLReR~e 406 (538)
T PRK15424 400 PLRERVA 406 (538)
T ss_pred Chhhchh
Confidence 8777654
No 368
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.18 E-value=6.5 Score=40.78 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=56.7
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSD-EVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~-~~~~~~la~~~ 286 (362)
.+.|+..|+... ..+++|++|+.+..|-+++.. |. ..+.|..++..+-...++.++.+.++.- .-.+..|+..+
T Consensus 138 ~naLLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s 212 (614)
T PRK14971 138 FNAFLKTLEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKA 212 (614)
T ss_pred HHHHHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 566776666544 456677777777888888877 65 4588888888888888888776655432 22366777765
Q ss_pred CCCCHHHHHHHHHH
Q psy6770 287 DRISGADINAICQE 300 (362)
Q Consensus 287 ~g~sgadi~~~~~~ 300 (362)
.| +..++.+.+..
T Consensus 213 ~g-dlr~al~~Lek 225 (614)
T PRK14971 213 DG-GMRDALSIFDQ 225 (614)
T ss_pred CC-CHHHHHHHHHH
Confidence 43 44444444433
No 369
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=76.99 E-value=10 Score=39.05 Aligned_cols=102 Identities=15% Similarity=0.048 Sum_probs=65.9
Q ss_pred CCeEEEEecCCC---CCCCccccCCCCcceeEEecCCCHHHH---------HHHHHHHhccCCCCCCCCHHHHhhC--CC
Q psy6770 222 GNLQVIMATNRA---DTLDPALLRPGRLDRKIEFPLPDRRQK---------RLVFSTITAKMNLSDEVDLEDYVAR--PD 287 (362)
Q Consensus 222 ~~v~vi~aTn~~---~~lD~a~~RpgRfd~~i~~~~P~~~~r---------~~i~~~~l~~~~~~~~~~~~~la~~--~~ 287 (362)
.+.++|++-|.. ..|.++++- ||+.++.++.|...+- ..-.+..+.+..+.+. .++.++.. .-
T Consensus 135 a~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~ 211 (584)
T PRK13406 135 ARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAAL 211 (584)
T ss_pred CCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHh
Confidence 356666653322 358999999 9999999998875432 2222223343333322 23333332 24
Q ss_pred CC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 288 RI-SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 288 g~-sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
|. |..---.+++-|.-.|..+++..|+.+|+..|+.-+-
T Consensus 212 gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 212 GIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred CCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 55 6666667788888888889999999999999987654
No 370
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=76.88 E-value=4.3 Score=41.76 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=68.7
Q ss_pred CcHHHHHHhhhC--CcEEEEechhhhhhhcCch--HHHHHH---HH---HHHHHcCCeEEEeccccccccccCCCCCCCc
Q psy6770 1 YLLCTSFDTELV--TAFIRVVGSEFVQKYLGEG--PRMVRD---VF---RLAKENSPAIIFIDEIDAIATKRFDAQTGAD 70 (362)
Q Consensus 1 slLakaiA~e~~--~~~~~v~~s~l~~~~~ges--e~~l~~---~F---~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~ 70 (362)
|.++++++.-+- .||..+..+--....+|.. +..|+. +| ..+..+ ..|+|+||+..+-
T Consensus 39 s~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah-~GvL~lDe~n~~~----------- 106 (584)
T PRK13406 39 DRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD-GGVLVLAMAERLE----------- 106 (584)
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc-CCEEEecCcccCC-----------
Confidence 457788887765 4888877765555555532 222211 11 111222 2799999998663
Q ss_pred HHHHHHHHHHHHhccC---------C--CCCCCeEEEEEcCC---CCCCCccccCCCcceeEEEccCCCHHH
Q psy6770 71 REVQRILLELLNQMDG---------F--DQTTNVKVIMATNR---ADTLDPALLRPGRLDRKIEFPLPDRRQ 128 (362)
Q Consensus 71 ~~~~~~l~~lL~~ld~---------l--~~~~~v~vi~tTn~---~~~ld~al~r~gRf~~~i~i~~P~~~~ 128 (362)
..++..|++-|+. . ....+.++|++-|. -..+.++++. ||+..+.++.|+..+
T Consensus 107 ---~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 107 ---PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred ---HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence 2556666666653 1 12345777776332 1358889999 999999999887543
No 371
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.40 E-value=24 Score=38.08 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=60.6
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
.++.||..|+... +++.+|++|+.++.|.+.++. |. .++.|..++.++-...++..+....+. .+-.+..|++.
T Consensus 135 AqNALLKtLEEPP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~ 209 (944)
T PRK14949 135 SFNALLKTLEEPP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKA 209 (944)
T ss_pred HHHHHHHHHhccC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4577777666543 567788888889999888776 66 567788888888888888877653332 22236667776
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAG 302 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~ 302 (362)
+.| +.+++-++|..+.
T Consensus 210 S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 210 ANG-SMRDALSLTDQAI 225 (944)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 655 3455666665544
No 372
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=75.30 E-value=23 Score=33.17 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=50.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARP 286 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~ 286 (362)
..|.+|..++... .++++|..|+.++.|-|.+.- |. ..++|..|+.++-...++..... . ++.+++.++..+
T Consensus 109 a~naLLK~LEepp--~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~ 180 (313)
T PRK05564 109 AQNAFLKTIEEPP--KGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFS 180 (313)
T ss_pred HHHHHHHHhcCCC--CCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHc
Confidence 4677887777543 566777777889999888766 66 48889888888877666655432 1 122345566655
Q ss_pred CCCCH
Q psy6770 287 DRISG 291 (362)
Q Consensus 287 ~g~sg 291 (362)
.|-.|
T Consensus 181 ~g~~~ 185 (313)
T PRK05564 181 DGIPG 185 (313)
T ss_pred CCCHH
Confidence 55433
No 373
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=74.93 E-value=20 Score=36.45 Aligned_cols=158 Identities=13% Similarity=0.171 Sum_probs=81.1
Q ss_pred CcHHHHHHhhhCCcEEEE-echhhh------hhhcCch---H---HHHH---HH-HHHHHH-----------cCCeEEEe
Q psy6770 1 YLLCTSFDTELVTAFIRV-VGSEFV------QKYLGEG---P---RMVR---DV-FRLAKE-----------NSPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v-~~s~l~------~~~~ges---e---~~l~---~~-F~~a~~-----------~~P~II~i 52 (362)
|..+++||+|+|..+.+- ++..+. ..+.+.. . ..+. .+ ++.++. ..+.||+|
T Consensus 59 tttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILV 138 (519)
T PF03215_consen 59 TTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILV 138 (519)
T ss_pred HHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEe
Confidence 457899999999999884 333311 1111110 0 1111 11 222221 24689999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCC-CeEEEEE-cC------CCC--------CCCccccCCCcce
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMA-TN------RAD--------TLDPALLRPGRLD 116 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~-~v~vi~t-Tn------~~~--------~ld~al~r~gRf~ 116 (362)
||+=.++... . ......+.+++.. ... ++|+|.| +. ... .+++.++...++
T Consensus 139 EDlPN~~~~~------~-~~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i- 205 (519)
T PF03215_consen 139 EDLPNVFHRD------T-SRFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI- 205 (519)
T ss_pred eccccccchh------H-HHHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-
Confidence 9988665332 1 3334445555432 223 6666666 11 111 345555543333
Q ss_pred eEEEccCCCHHHHHHHHHHHHccC--------CCCCcCC-HHHHHhcCCCCcHhhHHHHHHHHHHhhc
Q psy6770 117 RKIEFPLPDRRQKRLVFSTITAKM--------NLSDEVD-LEDYVARPDRISGADINAICQEVIMATN 175 (362)
Q Consensus 117 ~~i~i~~P~~~~r~~il~~~~~~~--------~~~~~~d-l~~la~~t~g~s~~di~~l~~~a~~~~~ 175 (362)
..|.|.+=...--..-|+..+... ......+ ++.++.. +.+||+.++..-...+.
T Consensus 206 ~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~----s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 206 TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAES----SNGDIRSAINNLQFWCL 269 (519)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHh----cCchHHHHHHHHHHHhc
Confidence 567776655544444444333322 1111122 5666655 45899999887776666
No 374
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=74.49 E-value=17 Score=32.95 Aligned_cols=67 Identities=15% Similarity=0.301 Sum_probs=50.3
Q ss_pred hhhhhhhhhhhh--ccCCeEEEEecCCCCCCCccc----------cCC-----------CCcceeEEecCCCHHHHHHHH
Q psy6770 208 FSTITAKMNFML--NIGNLQVIMATNRADTLDPAL----------LRP-----------GRLDRKIEFPLPDRRQKRLVF 264 (362)
Q Consensus 208 ~~~~l~~~~~~~--~~~~v~vi~aTn~~~~lD~a~----------~Rp-----------gRfd~~i~~~~P~~~~r~~i~ 264 (362)
++++-+-|+|-- ..+||++.+|+|+-+.+..-. +.| -||...|.|..|+.++=.+|+
T Consensus 124 yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV 203 (249)
T PF05673_consen 124 YKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIV 203 (249)
T ss_pred HHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHH
Confidence 344555566543 346899999999988775532 222 289999999999999999999
Q ss_pred HHHhccCCCC
Q psy6770 265 STITAKMNLS 274 (362)
Q Consensus 265 ~~~l~~~~~~ 274 (362)
+.++.+..+.
T Consensus 204 ~~~~~~~g~~ 213 (249)
T PF05673_consen 204 RHYAERYGLE 213 (249)
T ss_pred HHHHHHcCCC
Confidence 9999876554
No 375
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=74.33 E-value=12 Score=37.37 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=84.2
Q ss_pred cHHHHHHhhhC---CcEEEEechhhhhhhcCchHH--HHHHHHHHHHHcC--------CeEEEeccccccccccCCCCCC
Q psy6770 2 LLCTSFDTELV---TAFIRVVGSEFVQKYLGEGPR--MVRDVFRLAKENS--------PAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 2 lLakaiA~e~~---~~~~~v~~s~l~~~~~gese~--~l~~~F~~a~~~~--------P~II~iDeiD~l~~~r~~~~~~ 68 (362)
++||+|=.... -||+.+||..+=.... |||- ..+-.|.-|-... ..-+|+|||-.+-.
T Consensus 261 lvAraIH~~S~R~~kPfV~~NCAAlPesLl-ESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL-------- 331 (550)
T COG3604 261 LVARAIHQLSPRRDKPFVKLNCAALPESLL-ESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL-------- 331 (550)
T ss_pred HHHHHHHhhCcccCCCceeeeccccchHHH-HHHHhcccccccccchhccCcceeecCCCeEechhhccCCH--------
Confidence 46677655444 5999999975532110 1111 1334555554332 36899999987632
Q ss_pred CcHHHHHHHHHHHH--hccCCCCCC----CeEEEEEcCCCCCCCccccCCCcce-------eEEEccCCCHHHHHH----
Q psy6770 69 ADREVQRILLELLN--QMDGFDQTT----NVKVIMATNRADTLDPALLRPGRLD-------RKIEFPLPDRRQKRL---- 131 (362)
Q Consensus 69 ~~~~~~~~l~~lL~--~ld~l~~~~----~v~vi~tTn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~---- 131 (362)
....-+...|+ +++.+-.+. .|=+|++||+ ++..+++ .|+|. .++.+.+|...+|..
T Consensus 332 ---~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIpl 405 (550)
T COG3604 332 ---ALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPL 405 (550)
T ss_pred ---HHHHHHHHHHhhcceeecCCCceeEEEEEEEeccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHH
Confidence 22333444444 344442222 4889999996 4544444 46774 345566787766644
Q ss_pred HHHHHHccC----CC-CCcCC---HHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 132 VFSTITAKM----NL-SDEVD---LEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 132 il~~~~~~~----~~-~~~~d---l~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
+.++++.+. +. ...++ ++.+....--=+..++++++..|+..+
T Consensus 406 LA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 406 LAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 333444332 22 11112 233333222225577888888888765
No 376
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=73.27 E-value=5.8 Score=39.15 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHc----CCe-EEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCcc
Q psy6770 34 MVRDVFRLAKEN----SPA-IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 108 (362)
Q Consensus 34 ~l~~~F~~a~~~----~P~-II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~a 108 (362)
.|.++|+..-.. +|- |+||||.|-+|... .......+.+.... -.+.+|=|+..|-.|.+||..
T Consensus 238 LLsELfe~LPEvGD~dkPklVfFfDEAHLLF~da-------~kall~~ieqvvrL----IRSKGVGv~fvTQ~P~DiP~~ 306 (502)
T PF05872_consen 238 LLSELFEQLPEVGDLDKPKLVFFFDEAHLLFNDA-------PKALLDKIEQVVRL----IRSKGVGVYFVTQNPTDIPDD 306 (502)
T ss_pred HHHHHHHhCccCCCCCCceEEEEEechhhhhcCC-------CHHHHHHHHHHHHH----hhccCceEEEEeCCCCCCCHH
Confidence 467778777543 465 56899999998532 22223333333333 346788899999999999988
Q ss_pred ccC
Q psy6770 109 LLR 111 (362)
Q Consensus 109 l~r 111 (362)
++.
T Consensus 307 VL~ 309 (502)
T PF05872_consen 307 VLG 309 (502)
T ss_pred HHH
Confidence 876
No 377
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.13 E-value=6.2 Score=38.53 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=63.3
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.++..++... ...++|.+|+.+..+-+++.. |.. .+.|..++.++-...++..+.+.... ++-.++.|+..+
T Consensus 144 ~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 144 FNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 345555554332 355666677777888888776 664 68888888888777777777544332 222356666655
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVR-ENRYIVLPKDFEKGY 322 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~-~~~~~v~~~~~~~a~ 322 (362)
.| +...+.+.+......+-. .+...|+.+++.+.+
T Consensus 219 ~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 43 444555555544433311 123466766665443
No 378
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=72.58 E-value=9.3 Score=33.97 Aligned_cols=90 Identities=17% Similarity=0.264 Sum_probs=53.4
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCC---CccccCCCCcce--eEEecCCCHHHHHHHHHHHhccCCCC--CCCCHH
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTL---DPALLRPGRLDR--KIEFPLPDRRQKRLVFSTITAKMNLS--DEVDLE 280 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~l---D~a~~RpgRfd~--~i~~~~P~~~~r~~i~~~~l~~~~~~--~~~~~~ 280 (362)
-.++...++.+.+.++-+|+.+...|..+ ++.+.- ||.- .+.+..|+.+.|.+|++.......+. +++ ++
T Consensus 116 q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~ 192 (219)
T PF00308_consen 116 QEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IE 192 (219)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HH
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HH
Confidence 45566667777777777777777777765 455555 7665 66677899999999999988755443 222 44
Q ss_pred HHhhCCCCCCHHHHHHHHHHH
Q psy6770 281 DYVARPDRISGADINAICQEA 301 (362)
Q Consensus 281 ~la~~~~g~sgadi~~~~~~a 301 (362)
.|++... -+..+|..++.+-
T Consensus 193 ~l~~~~~-~~~r~L~~~l~~l 212 (219)
T PF00308_consen 193 YLARRFR-RDVRELEGALNRL 212 (219)
T ss_dssp HHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHhhc-CCHHHHHHHHHHH
Confidence 4555433 2556666665544
No 379
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=72.39 E-value=5.4 Score=40.55 Aligned_cols=120 Identities=19% Similarity=0.298 Sum_probs=61.5
Q ss_pred cHHHHHHhh---hCCcEEEEechhhhhh-----hcCchHH--------HHHHHHHHHHHcCCeEEEeccccccccccCCC
Q psy6770 2 LLCTSFDTE---LVTAFIRVVGSEFVQK-----YLGEGPR--------MVRDVFRLAKENSPAIIFIDEIDAIATKRFDA 65 (362)
Q Consensus 2 lLakaiA~e---~~~~~~~v~~s~l~~~-----~~gese~--------~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~ 65 (362)
++|++|-+. .+.||+.|+|..+-.. .+|..+. .-..+|+.|. ...|||||||.+-.
T Consensus 250 ~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~----- 321 (526)
T TIGR02329 250 LVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPL----- 321 (526)
T ss_pred HHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCH-----
Confidence 578888755 4569999999866321 1221000 0012333332 37899999998742
Q ss_pred CCCCcHHHHHHHHHHHHhcc--CCCC----CCCeEEEEEcCCCCCCCccccCCCccee-------EEEccCCCHHHHHH-
Q psy6770 66 QTGADREVQRILLELLNQMD--GFDQ----TTNVKVIMATNRADTLDPALLRPGRLDR-------KIEFPLPDRRQKRL- 131 (362)
Q Consensus 66 ~~~~~~~~~~~l~~lL~~ld--~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~~-------~i~i~~P~~~~r~~- 131 (362)
.....+..+|++-. .+.. ..++-+|++||..- . .+...|+|.. .+.+.+|...+|.+
T Consensus 322 ------~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l--~-~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eD 392 (526)
T TIGR02329 322 ------PLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCAL--T-TAVQQGRFRRDLFYRLSILRIALPPLRERPGD 392 (526)
T ss_pred ------HHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCH--H-HHhhhcchhHHHHHhcCCcEEeCCCchhchhH
Confidence 22344455554311 1111 12356788877542 1 1122234332 35666777666654
Q ss_pred ---HHHHHHc
Q psy6770 132 ---VFSTITA 138 (362)
Q Consensus 132 ---il~~~~~ 138 (362)
++..++.
T Consensus 393 I~~L~~~fl~ 402 (526)
T TIGR02329 393 ILPLAAEYLV 402 (526)
T ss_pred HHHHHHHHHH
Confidence 4444444
No 380
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=72.11 E-value=2.5 Score=37.14 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=25.2
Q ss_pred CCChhhhhhhhhhhhhhhhh------hhhccCCeEEEEecCC
Q psy6770 197 PLPDRRQKRLVFSTITAKMN------FMLNIGNLQVIMATNR 232 (362)
Q Consensus 197 ~~~~~~~k~~~~~~~l~~~~------~~~~~~~v~vi~aTn~ 232 (362)
-+|||+|||.++..++..+. ......++++++.||.
T Consensus 23 ~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~ 64 (236)
T PF13086_consen 23 QGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNA 64 (236)
T ss_dssp E-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHH
T ss_pred ECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCch
Confidence 34899999998888888772 2444566777777775
No 381
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.96 E-value=14 Score=38.43 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=62.3
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.|+..|+... +.+++|.+|+.++.|-+.+.. |. ..+.|..++..+-...++..+.+.... ++-.++.|+..+
T Consensus 144 ~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s 218 (620)
T PRK14954 144 FNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKA 218 (620)
T ss_pred HHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 456666665544 345666667778888888766 54 578888888888777777777654332 233466677765
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVR-ENRYIVLPKDFEKG 321 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~-~~~~~v~~~~~~~a 321 (362)
.| +..++.+.+......+.. .+...|+.+++.+.
T Consensus 219 ~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~l 253 (620)
T PRK14954 219 QG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAEL 253 (620)
T ss_pred CC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHH
Confidence 54 334444444333322210 11345565555443
No 382
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=71.84 E-value=11 Score=35.82 Aligned_cols=82 Identities=24% Similarity=0.310 Sum_probs=45.2
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhc-cCCCC-------CCCeEEEEEcCCCC-------------CC
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM-DGFDQ-------TTNVKVIMATNRAD-------------TL 105 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l-d~l~~-------~~~v~vi~tTn~~~-------------~l 105 (362)
..|++|||+|.+-. .....+.+.+.+= -.+.. +.+.-|++++|-.. .+
T Consensus 122 ~GiccIDe~dk~~~-----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l 190 (331)
T PF00493_consen 122 GGICCIDEFDKMKE-----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINL 190 (331)
T ss_dssp TSEEEECTTTT--C-----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S
T ss_pred Cceeeecccccccc-----------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhccc
Confidence 38999999998732 1133444444320 00111 23567888888665 58
Q ss_pred CccccCCCcceeEEEc-cCCCHHHHHHHHHHHHccCC
Q psy6770 106 DPALLRPGRLDRKIEF-PLPDRRQKRLVFSTITAKMN 141 (362)
Q Consensus 106 d~al~r~gRf~~~i~i-~~P~~~~r~~il~~~~~~~~ 141 (362)
++.++. |||..+.+ ..|+.+.-..+.++.+....
T Consensus 191 ~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~ 225 (331)
T PF00493_consen 191 PPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHR 225 (331)
T ss_dssp -CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT-
T ss_pred chhhHh--hcCEEEEeccccccccccccceEEEeccc
Confidence 899999 99998775 67787777777777776543
No 383
>PRK14700 recombination factor protein RarA; Provisional
Probab=70.48 E-value=7.3 Score=36.33 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCCCeEEEEE-cCCCC-CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCC------CC-CcCCHHHHHhcCCCCc
Q psy6770 89 QTTNVKVIMA-TNRAD-TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN------LS-DEVDLEDYVARPDRIS 159 (362)
Q Consensus 89 ~~~~v~vi~t-Tn~~~-~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~------~~-~~~dl~~la~~t~g~s 159 (362)
+++.+.+||+ |..|. .+.+|+++ |+ .++.+...+.++...+++..+.... +. ++.-++.|+. ++
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~----~a 77 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN----YN 77 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH----hc
Confidence 4567888875 55564 89999999 88 7899999999999999998886421 11 1112344444 45
Q ss_pred HhhHHHHHHHH
Q psy6770 160 GADINAICQEV 170 (362)
Q Consensus 160 ~~di~~l~~~a 170 (362)
.+|.+.+++..
T Consensus 78 ~GDaR~aLN~L 88 (300)
T PRK14700 78 EGDCRKILNLL 88 (300)
T ss_pred CCHHHHHHHHH
Confidence 56766665543
No 384
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.62 E-value=17 Score=37.78 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=54.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVAR 285 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~ 285 (362)
..+.||..|+... +++++|++|+.++.+-+.+.. |. ..+.|..|..++-...++.+..+.+.. +...+..+++.
T Consensus 137 a~naLLK~LEePp--~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~ 211 (620)
T PRK14948 137 AFNALLKTLEEPP--PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQR 211 (620)
T ss_pred HHHHHHHHHhcCC--cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4577777777433 567888888889988888776 66 457777777776666666666543322 12236667776
Q ss_pred CCCCCHHHHHHHHH
Q psy6770 286 PDRISGADINAICQ 299 (362)
Q Consensus 286 ~~g~sgadi~~~~~ 299 (362)
+.|- ..++.+++.
T Consensus 212 s~G~-lr~A~~lLe 224 (620)
T PRK14948 212 SQGG-LRDAESLLD 224 (620)
T ss_pred cCCC-HHHHHHHHH
Confidence 6552 234444443
No 385
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=69.27 E-value=12 Score=36.00 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=52.8
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPD 287 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~ 287 (362)
.|.+|..|+... .++++|..|+.|+.+.|.+.- |. .++.++.|+.++-..+++......+++ +..+..+++.+.
T Consensus 158 anaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~~s~ 231 (351)
T PRK09112 158 ANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALLQRSK 231 (351)
T ss_pred HHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHHHHcC
Confidence 466777776533 456777778889999877654 88 699999999999888888743222111 112455666666
Q ss_pred CCCHHH
Q psy6770 288 RISGAD 293 (362)
Q Consensus 288 g~sgad 293 (362)
|--+.-
T Consensus 232 G~pr~A 237 (351)
T PRK09112 232 GSVRKA 237 (351)
T ss_pred CCHHHH
Confidence 554443
No 386
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.85 E-value=8.6 Score=35.12 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=32.4
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcC-----chHHHHHHHHHHHHHcCCeEEEecccccc
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLG-----EGPRMVRDVFRLAKENSPAIIFIDEIDAI 58 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~g-----ese~~l~~~F~~a~~~~P~II~iDeiD~l 58 (362)
|.||-|||+++ |..++.+..++++..... ..+..+... -....+++|||+-..
T Consensus 119 ThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-----l~~~dlLIiDDlG~~ 179 (254)
T COG1484 119 THLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-----LKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-----hhcCCEEEEecccCc
Confidence 35666666655 788999999988765322 112211111 224589999998754
No 387
>KOG2680|consensus
Probab=67.54 E-value=43 Score=31.47 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=60.8
Q ss_pred EEEEecCC------------CCCCCccccCCCCcceeEEec-CC-CHHHHHHHHHHHhccCCCCC-CCCHHHHhhCCCCC
Q psy6770 225 QVIMATNR------------ADTLDPALLRPGRLDRKIEFP-LP-DRRQKRLVFSTITAKMNLSD-EVDLEDYVARPDRI 289 (362)
Q Consensus 225 ~vi~aTn~------------~~~lD~a~~RpgRfd~~i~~~-~P-~~~~r~~i~~~~l~~~~~~~-~~~~~~la~~~~g~ 289 (362)
++++|||+ |+-|+..++- |. +-+. .| ..++-..|++.-...-.+.- +-.++.|.......
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~---lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~t 393 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM---LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEAT 393 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh---heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhh
Confidence 56666664 5566666655 43 3322 33 55667778887664332221 11245555555544
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 290 SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 290 sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
|=.=--+++..|.+.|.+.....+..+|+.++..-+-
T Consensus 394 sLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 394 SLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFL 430 (454)
T ss_pred hHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHh
Confidence 5444457888899999999889999999999977543
No 388
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=66.78 E-value=18 Score=32.89 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=43.5
Q ss_pred CCeEEEEecCCCCCCCcccc-C-------------------CCCcceeEEecCCCHHHHHHHHHHHhccCCCC
Q psy6770 222 GNLQVIMATNRADTLDPALL-R-------------------PGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS 274 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~-R-------------------pgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~ 274 (362)
.+|++.+++|+-+.|..-.. + +-||...+.|..|+.++=..|+..|.++..++
T Consensus 173 ~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 173 ANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred CeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 57999999999988873321 1 23899999999999999999999999887765
No 389
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=65.85 E-value=61 Score=32.76 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=27.5
Q ss_pred CCeEEEEecCCC------C-----------------CCCccccCCCCcceeEEecCCCHH
Q psy6770 222 GNLQVIMATNRA------D-----------------TLDPALLRPGRLDRKIEFPLPDRR 258 (362)
Q Consensus 222 ~~v~vi~aTn~~------~-----------------~lD~a~~RpgRfd~~i~~~~P~~~ 258 (362)
.++.+|++||.. + .|...++- |||.++.++.++..
T Consensus 337 a~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 337 ARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred CCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 367889999852 1 48888899 99999999977554
No 390
>PRK04132 replication factor C small subunit; Provisional
Probab=64.97 E-value=19 Score=38.68 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=48.2
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCC
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRI 289 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~ 289 (362)
+++.+|++||.++.+-+++.. |. ..+.|..|+.++-...++....+.++. ++-.+..++..+.|-
T Consensus 659 ~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GD 724 (846)
T PRK04132 659 SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGD 724 (846)
T ss_pred CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC
Confidence 578999999999999988876 75 667888888888887788777654332 233577777766653
No 391
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=64.95 E-value=3.2 Score=41.07 Aligned_cols=33 Identities=33% Similarity=0.364 Sum_probs=27.3
Q ss_pred hhccCCeEEEEecCCCC----CCCccccCCCCcceeEEec
Q psy6770 218 MLNIGNLQVIMATNRAD----TLDPALLRPGRLDRKIEFP 253 (362)
Q Consensus 218 ~~~~~~v~vi~aTn~~~----~lD~a~~RpgRfd~~i~~~ 253 (362)
+.-..++.+|+|+|..| .+|.|++| ||.. |.+.
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~ 356 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIE 356 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEec
Confidence 44567899999999999 89999999 9965 4554
No 392
>KOG0480|consensus
Probab=64.43 E-value=98 Score=32.19 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCch
Q psy6770 255 PDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMH 329 (362)
Q Consensus 255 P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~ 329 (362)
-+.++...+.+.|.+- ...+ .....+.+.+.|-.+++.+++-+--.|--+.++.++.+|.++|.+=.+.|.
T Consensus 577 ls~ea~~~lve~Y~~l-R~~~---~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 577 LSKEASEMLVEKYKGL-RQRD---AQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKSI 647 (764)
T ss_pred ccHHHHHHHHHHHHHH-HHhh---ccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhh
Confidence 3555555565555431 1111 111224466788999999999886666666778999999999988877654
No 393
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=64.05 E-value=19 Score=34.66 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=52.7
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCC--C--C-----CCCeEEEEEcCCC-------CCCCccccC
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGF--D--Q-----TTNVKVIMATNRA-------DTLDPALLR 111 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l--~--~-----~~~v~vi~tTn~~-------~~ld~al~r 111 (362)
.|+-|+|++..- ..++..||+.++.- + + .-..++|++||.. .....++++
T Consensus 238 Gi~~f~Ei~K~~--------------~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d 303 (361)
T smart00763 238 GILEFVEMFKAD--------------IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD 303 (361)
T ss_pred ceEEEeehhcCC--------------HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh
Confidence 567677766431 35677777766632 1 1 1236788999987 366889999
Q ss_pred CCcceeEEEccCCC-HHHHHHHHHHHHcc
Q psy6770 112 PGRLDRKIEFPLPD-RRQKRLVFSTITAK 139 (362)
Q Consensus 112 ~gRf~~~i~i~~P~-~~~r~~il~~~~~~ 139 (362)
|+. .+.+|.|. ..+-.+|.++.+..
T Consensus 304 --R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 304 --RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred --ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 997 88998875 67788888888864
No 394
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=63.69 E-value=6.3 Score=33.86 Aligned_cols=86 Identities=10% Similarity=0.212 Sum_probs=44.0
Q ss_pred CcHHHHHHhh---hCCcEEEEechhhhhhhcCc-hHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTE---LVTAFIRVVGSEFVQKYLGE-GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e---~~~~~~~v~~s~l~~~~~ge-se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|.||.|+|++ .|.+.+.++.++++...... ........++... .+.+++|||+-..- .+......
T Consensus 61 ThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~---------~~~~~~~~ 129 (178)
T PF01695_consen 61 THLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP---------LSEWEAEL 129 (178)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS------------HHHHHC
T ss_pred HHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee---------eccccccc
Confidence 3566777654 57888899999887653321 1111233344333 45889999985321 12223344
Q ss_pred HHHHHHhccCCCCCCCeEEEEEcCCC
Q psy6770 77 LLELLNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 77 l~~lL~~ld~l~~~~~v~vi~tTn~~ 102 (362)
+-++++.-- . .+ .+|.|||..
T Consensus 130 l~~ii~~R~---~-~~-~tIiTSN~~ 150 (178)
T PF01695_consen 130 LFEIIDERY---E-RK-PTIITSNLS 150 (178)
T ss_dssp THHHHHHHH---H-T--EEEEEESS-
T ss_pred chhhhhHhh---c-cc-CeEeeCCCc
Confidence 555554322 1 12 477799964
No 395
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=63.59 E-value=14 Score=35.06 Aligned_cols=46 Identities=7% Similarity=0.131 Sum_probs=38.5
Q ss_pred CeEEEEecCCCC------------CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc
Q psy6770 223 NLQVIMATNRAD------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK 270 (362)
Q Consensus 223 ~v~vi~aTn~~~------------~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~ 270 (362)
+..||+|+|-.. .++.|++- ||-.++.+++|+.++-.+|+......
T Consensus 178 ~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 178 AFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred CeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 577899999754 46899999 99999999999999999998876543
No 396
>PRK11823 DNA repair protein RadA; Provisional
Probab=63.47 E-value=40 Score=33.52 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCeEEEecccccccccc
Q psy6770 34 MVRDVFRLAKENSPAIIFIDEIDAIATKR 62 (362)
Q Consensus 34 ~l~~~F~~a~~~~P~II~iDeiD~l~~~r 62 (362)
.+..+++.++...|.+|+||.+-.+....
T Consensus 144 ~l~~i~~~i~~~~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 144 NLEAILATIEEEKPDLVVIDSIQTMYSPE 172 (446)
T ss_pred CHHHHHHHHHhhCCCEEEEechhhhcccc
Confidence 35667777788899999999999987543
No 397
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=63.45 E-value=20 Score=27.73 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=9.2
Q ss_pred eEEEeccccccc
Q psy6770 48 AIIFIDEIDAIA 59 (362)
Q Consensus 48 ~II~iDeiD~l~ 59 (362)
.++++||+...-
T Consensus 51 ~vvi~DD~~~~~ 62 (107)
T PF00910_consen 51 PVVIIDDFGQDN 62 (107)
T ss_pred cEEEEeecCccc
Confidence 788899987653
No 398
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=62.10 E-value=36 Score=32.91 Aligned_cols=104 Identities=20% Similarity=0.163 Sum_probs=70.7
Q ss_pred cCCeEEEEecCCCC---CCCccccCCCCcc-eeEEecCCCHHHHHHHHHHHhccCCCCC---CCCHHHHhhCCCCCCHHH
Q psy6770 221 IGNLQVIMATNRAD---TLDPALLRPGRLD-RKIEFPLPDRRQKRLVFSTITAKMNLSD---EVDLEDYVARPDRISGAD 293 (362)
Q Consensus 221 ~~~v~vi~aTn~~~---~lD~a~~RpgRfd-~~i~~~~P~~~~r~~i~~~~l~~~~~~~---~~~~~~la~~~~g~sgad 293 (362)
..++.+|+.+|..+ .+||-+.. ||- ..|.|+.=+.+|-..|++.-...--... +--++.+|....-.+| |
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-D 230 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-D 230 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-c
Confidence 45688999998864 77888766 543 3367777788999999998775321111 1123334433322332 4
Q ss_pred HH---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 294 IN---AICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 294 i~---~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
.+ .+|+.|+..|-+++...++.+|...|......
T Consensus 231 AR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 231 ARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 44 58999999999999999999999999555544
No 399
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=61.83 E-value=8.8 Score=36.99 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=30.6
Q ss_pred cHHHHHHhhhC--CcEEEEechhhhhhhcCchHHHHHHHHHHH
Q psy6770 2 LLCTSFDTELV--TAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 42 (362)
Q Consensus 2 lLakaiA~e~~--~~~~~v~~s~l~~~~~gese~~l~~~F~~a 42 (362)
-||-+||.++| +||..+++|++++..+..+| .|.+.|+.|
T Consensus 65 AlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~Rra 106 (398)
T PF06068_consen 65 ALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRA 106 (398)
T ss_dssp HHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCS
T ss_pred HHHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHh
Confidence 47899999999 89999999999998777765 466667666
No 400
>PRK04841 transcriptional regulator MalT; Provisional
Probab=60.49 E-value=49 Score=35.75 Aligned_cols=107 Identities=14% Similarity=0.234 Sum_probs=57.8
Q ss_pred HHHHHHHHHH-cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc-cccCC
Q psy6770 35 VRDVFRLAKE-NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP-ALLRP 112 (362)
Q Consensus 35 l~~~F~~a~~-~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~-al~r~ 112 (362)
+..++..... ..|.+|+|||++.+- +......+..++..+ .+++.+|.++...-.++- .+...
T Consensus 109 ~~~~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~ 173 (903)
T PRK04841 109 FAQLFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR 173 (903)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc
Confidence 4444444433 579999999999872 122345666666543 233444445544211211 11111
Q ss_pred CcceeEEEcc----CCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHh
Q psy6770 113 GRLDRKIEFP----LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGA 161 (362)
Q Consensus 113 gRf~~~i~i~----~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~ 161 (362)
+..+++. .-+.++-..++...+... + +..+...+.+.|.|...+
T Consensus 174 ---~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 174 ---DQLLEIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGWATA 221 (903)
T ss_pred ---CcceecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCChHHH
Confidence 2244555 457888888887655432 2 223567777888877543
No 401
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=60.48 E-value=39 Score=30.88 Aligned_cols=57 Identities=26% Similarity=0.411 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 36 RDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 36 ~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
|-++.+|-.+.|.++++|| .-.+.|......+.++|.++. .. +..|++.|..+..+-
T Consensus 147 RV~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~~v~ 203 (254)
T COG1121 147 RVLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKELR---QE-GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCcHHhH
Confidence 3356888889999999998 223455555677777777665 23 666777777766553
No 402
>PHA00012 I assembly protein
Probab=59.54 E-value=11 Score=35.83 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=39.7
Q ss_pred CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccC
Q psy6770 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLR 111 (362)
Q Consensus 47 P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r 111 (362)
-+++++||+...++.|..+.... ..+.+++... ...+.-+|.+|-+|..+|..++.
T Consensus 82 gsLlVlDEaq~~fp~R~~~sk~p-----~~vie~l~~h----Rh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 82 NGLLVLDECGTWFNSRSWNDKER-----QPVIDWFLHA----RKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CcEEEEECcccccCCCCcCcCCc-----HHHHHHHHHh----ccCCceEEEEcCCHHHHhHHHHH
Confidence 47999999999999996544332 2233333332 34567799999999999998863
No 403
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=59.20 E-value=21 Score=34.44 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=41.2
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCC-CCCCccccCCCcceeEEEccCCCH
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA-DTLDPALLRPGRLDRKIEFPLPDR 126 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~-~~ld~al~r~gRf~~~i~i~~P~~ 126 (362)
.+|+|||++-- |....-++..|+..+= ..+|++|+|+|.+ ++|=+ +.+.+...+|
T Consensus 129 ~lLcfDEF~V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~-----~gl~r~~Flp---- 184 (362)
T PF03969_consen 129 RLLCFDEFQVT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYK-----NGLQRERFLP---- 184 (362)
T ss_pred CEEEEeeeecc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC-----CcccHHHHHH----
Confidence 59999999842 1112344555554432 3589999999983 43322 1222211111
Q ss_pred HHHHHHHHHHHccCCCCCcCCHHH
Q psy6770 127 RQKRLVFSTITAKMNLSDEVDLED 150 (362)
Q Consensus 127 ~~r~~il~~~~~~~~~~~~~dl~~ 150 (362)
-..+++..+.-..++++.|+-.
T Consensus 185 --~I~~l~~~~~vv~ld~~~DyR~ 206 (362)
T PF03969_consen 185 --FIDLLKRRCDVVELDGGVDYRR 206 (362)
T ss_pred --HHHHHHhceEEEEecCCCchhh
Confidence 2445666666556666656543
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=58.99 E-value=46 Score=28.97 Aligned_cols=60 Identities=22% Similarity=0.380 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHH-HHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 33 RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ-RILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 33 ~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~-~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
+.++.+++.+....|.++++||.-+ +.+.... .+...++..+.. .+..+|.+|+.++.+.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~----------glD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~~ 152 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFK----------GTNSRERQAASAAVLKFLKN----KNTIGIISTHDLELAD 152 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccC----------CCCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHHH
Confidence 5577777777666899999999532 1222222 233444544432 2456778888776553
No 405
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=58.93 E-value=31 Score=31.54 Aligned_cols=74 Identities=18% Similarity=0.082 Sum_probs=54.4
Q ss_pred CcceeEEecCCCHHHHHHHHHHHhccCCCC----CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy6770 245 RLDRKIEFPLPDRRQKRLVFSTITAKMNLS----DEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319 (362)
Q Consensus 245 Rfd~~i~~~~P~~~~r~~i~~~~l~~~~~~----~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~ 319 (362)
|++-+|..++-+..+-...++..+++-... .+-.+..+...+.| .+.-|.++|..|...|...+.+.|+.....
T Consensus 190 R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 190 RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 677776677667777778888888654322 23345567777788 677799999999999999998888876543
No 406
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=58.92 E-value=23 Score=25.45 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=39.8
Q ss_pred HHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 261 RLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 261 ~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
.++++..-+...+++++ .+.|.+.++ .=+..++..|...|...++..|+..|+.-++++.
T Consensus 8 ~~lv~~id~~~~~~~da-~~~l~~~~e----~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 8 QELLKEIDPREQLDPDV-EELLLEIAD----DFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred HHHHHhhCCCCCcCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 34555554444444332 333444332 2467889999999999999999999999988764
No 407
>COG3899 Predicted ATPase [General function prediction only]
Probab=57.31 E-value=68 Score=34.80 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=72.2
Q ss_pred HHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEcc
Q psy6770 43 KENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 122 (362)
Q Consensus 43 ~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~ 122 (362)
....|-|||+||++.. |......+..++....-.....+.+....++.+. +.+..++.+++ ..|.+.
T Consensus 151 ~~~~plVi~leDlhWa-----------D~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~-~~~~~~~~~~i-~~I~L~ 217 (849)
T COG3899 151 AEEHPLVIVLEDLHWA-----------DSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPT-LGEILKSATNI-TTITLA 217 (849)
T ss_pred hccCCeEEEEeccccc-----------ChhHHHHHHHHHHhcchhhhhccccccCCCccch-hhHHhhcCCce-eEEecC
Confidence 3445999999999975 3333455555555443000111222222333332 23333332222 678999
Q ss_pred CCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 123 LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 123 ~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
+-+..+-..++...++............+.++|.| .|-=+.++++....
T Consensus 218 PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~G-nPfFi~e~lk~l~~ 266 (849)
T COG3899 218 PLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKG-NPFFIEEFLKALYE 266 (849)
T ss_pred cCchhhHHHHHHHHhCCcccccchHHHHHHHHhcC-CCccHHHHHHHHHh
Confidence 99999999999998887444444467888999999 99999988876554
No 408
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=56.95 E-value=36 Score=30.50 Aligned_cols=67 Identities=31% Similarity=0.448 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcc
Q psy6770 36 RDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRL 115 (362)
Q Consensus 36 ~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf 115 (362)
|-...+|-...|.||+-|| ..++-|......+..++.++. ...+..+|..|..+ .+.. ++
T Consensus 150 RVAIARAL~~~P~iilADE----------PTgnLD~~t~~~V~~ll~~~~---~~~g~tii~VTHd~-----~lA~--~~ 209 (226)
T COG1136 150 RVAIARALINNPKIILADE----------PTGNLDSKTAKEVLELLRELN---KERGKTIIMVTHDP-----ELAK--YA 209 (226)
T ss_pred HHHHHHHHhcCCCeEEeeC----------ccccCChHHHHHHHHHHHHHH---HhcCCEEEEEcCCH-----HHHH--hC
Confidence 3456777788999999998 222334444455556665553 22243455555544 4444 66
Q ss_pred eeEEEcc
Q psy6770 116 DRKIEFP 122 (362)
Q Consensus 116 ~~~i~i~ 122 (362)
|++|++.
T Consensus 210 dr~i~l~ 216 (226)
T COG1136 210 DRVIELK 216 (226)
T ss_pred CEEEEEe
Confidence 7777663
No 409
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=56.69 E-value=18 Score=31.46 Aligned_cols=68 Identities=12% Similarity=0.248 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 35 VRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 35 l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
+..+.+.+....|.+|+||-+..++..... ... ....+.+..++..|..+....++.++.|.......
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~~~~~--~~~-~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~ 153 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYRLELS--DDR-ISRNRELARQLTLLLSLARKKNLAVVITNQVYTDV 153 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhHHHhC--Ccc-HHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEec
Confidence 555555666668999999999998743211 111 11122333333333333334566666664433333
No 410
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=56.51 E-value=54 Score=28.51 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=36.3
Q ss_pred HHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 39 FRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 39 F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
+-.|-...|.++++||-- .+.|......+.++|.++.. . +.-+|.+|+.++.++.
T Consensus 138 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~~---~-~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 138 LARLLVSNRPIWILDEPT----------AALDAAAVALFAELIRAHLA---Q-GGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHHHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCchhhcc
Confidence 455556689999999944 34455556666677665431 2 4457888888877774
No 411
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=56.06 E-value=12 Score=29.62 Aligned_cols=31 Identities=52% Similarity=0.600 Sum_probs=25.3
Q ss_pred cCCeEEEEecCCCC--CCCccccCCCCcceeEEec
Q psy6770 221 IGNLQVIMATNRAD--TLDPALLRPGRLDRKIEFP 253 (362)
Q Consensus 221 ~~~v~vi~aTn~~~--~lD~a~~RpgRfd~~i~~~ 253 (362)
..++.+|++||.+. .+++.+.. ||+.++.++
T Consensus 118 ~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 118 RENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred CCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 46788999999887 78888877 999888775
No 412
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=56.04 E-value=5.8 Score=32.07 Aligned_cols=22 Identities=45% Similarity=0.750 Sum_probs=19.0
Q ss_pred CeEEEEecCCCC----CCCccccCCCCc
Q psy6770 223 NLQVIMATNRAD----TLDPALLRPGRL 246 (362)
Q Consensus 223 ~v~vi~aTn~~~----~lD~a~~RpgRf 246 (362)
+..+|+|+|..+ .+++|+++ ||
T Consensus 114 ~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 114 NFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 589999999999 99999999 97
No 413
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=56.01 E-value=1.2e+02 Score=28.54 Aligned_cols=123 Identities=11% Similarity=0.059 Sum_probs=64.3
Q ss_pred HHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC-----
Q psy6770 35 VRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL----- 105 (362)
Q Consensus 35 l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l----- 105 (362)
+..+++.+... .+-+|+|++.+.+-.+. ....+..+...+ ...+.+.++++..++..+.-
T Consensus 61 ~~~l~~~~~t~~lF~~~klvii~~~~~l~~~~----------~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k 129 (340)
T PRK05574 61 WDDVLEACQSLPLFSDRKLVELRLPEFLTGAK----------GEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSA 129 (340)
T ss_pred HHHHHHHhhccCccccCeEEEEECCCCCCchh----------HHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhH
Confidence 44455555433 24678888877653221 123344555444 33333345555555543211
Q ss_pred -CccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCc-CCHHHHHhcCCCCcHhhHHHHHHHHHH
Q psy6770 106 -DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDE-VDLEDYVARPDRISGADINAICQEVIM 172 (362)
Q Consensus 106 -d~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~-~dl~~la~~t~g~s~~di~~l~~~a~~ 172 (362)
-.++.. ....++++.|+..+....++..+...+..-+ .....+++... -....+.+-+.....
T Consensus 130 ~~k~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~-~d~~~l~~El~KL~l 194 (340)
T PRK05574 130 WFKALKK---KAVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVE-GNLLALAQELEKLAL 194 (340)
T ss_pred HHHHHHh---CceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC-chHHHHHHHHHHHHh
Confidence 112322 2367889999999999999999988765421 13444454432 233334443333333
No 414
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=55.96 E-value=89 Score=29.31 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=48.6
Q ss_pred ceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 247 DRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 247 d~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
...+.++.|+..+....++.++.+.+.. +.-.++.|++. +|.|+..+-++....++..+...|+.+++.+.+...
T Consensus 138 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~----~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~ 213 (340)
T PRK05574 138 AVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAER----VEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDS 213 (340)
T ss_pred ceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----hCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhh
Confidence 4677788889888889999999776543 12234445543 445777777766666655432337888777665553
Q ss_pred h
Q psy6770 326 A 326 (362)
Q Consensus 326 ~ 326 (362)
.
T Consensus 214 ~ 214 (340)
T PRK05574 214 A 214 (340)
T ss_pred h
Confidence 3
No 415
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=55.40 E-value=70 Score=31.35 Aligned_cols=98 Identities=14% Similarity=0.217 Sum_probs=49.4
Q ss_pred CcHHHHHHhhhCC-----c-EEEEechh---------------hhhhhcCchHHHHH---HHHHHHHHc----CCeEEEe
Q psy6770 1 YLLCTSFDTELVT-----A-FIRVVGSE---------------FVQKYLGEGPRMVR---DVFRLAKEN----SPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~~~-----~-~~~v~~s~---------------l~~~~~gese~~l~---~~F~~a~~~----~P~II~i 52 (362)
|.|++.|++.... . ++.+.... +.+.+-...+..++ .+++.|+.. ..++|||
T Consensus 183 TTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~i 262 (416)
T PRK09376 183 TVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILL 262 (416)
T ss_pred hHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4678888876643 3 33333322 22333333444444 445555432 4689999
Q ss_pred ccccccccccC--------CCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEE
Q psy6770 53 DEIDAIATKRF--------DAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 98 (362)
Q Consensus 53 DeiD~l~~~r~--------~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~t 98 (362)
||++.+..... ....+-+.........|+..-..+.+.+.+-.|+|
T Consensus 263 DsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T 316 (416)
T PRK09376 263 DSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIAT 316 (416)
T ss_pred EChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEE
Confidence 99999865421 11222333333445566554444433334444444
No 416
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=55.27 E-value=20 Score=33.12 Aligned_cols=85 Identities=21% Similarity=0.500 Sum_probs=46.3
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCC--------CCCCCeEEEEEcCCCC---CCCccccCCCc
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGF--------DQTTNVKVIMATNRAD---TLDPALLRPGR 114 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l--------~~~~~v~vi~tTn~~~---~ld~al~r~gR 114 (362)
+.+|+||||+..-.+.. .+..+ ...++.++++. .|+ ..-.++.++++.+.+. .+++.+.| .
T Consensus 100 k~lv~fiDDlN~p~~d~----ygtq~-~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDK----YGTQP-PIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp SEEEEEEETTT-S---T----TS--H-HHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred cEEEEEecccCCCCCCC----CCCcC-HHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 35799999988654433 11111 22445555532 121 1113578888877432 36677776 5
Q ss_pred ceeEEEccCCCHHHHHHHHHHHHcc
Q psy6770 115 LDRKIEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 115 f~~~i~i~~P~~~~r~~il~~~~~~ 139 (362)
| .++.++.|+.+.-..|+...+..
T Consensus 172 f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 172 F-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E-EEEE----TCCHHHHHHHHHHHH
T ss_pred e-EEEEecCCChHHHHHHHHHHHhh
Confidence 5 68999999999888888777654
No 417
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=55.07 E-value=37 Score=31.67 Aligned_cols=70 Identities=23% Similarity=0.408 Sum_probs=45.7
Q ss_pred hhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCC
Q psy6770 22 EFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR 101 (362)
Q Consensus 22 ~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~ 101 (362)
..++.+.+.-.+++ .+-.|-...|.++++|| ..++-|+.....+.+++..+. ...+..|+.+|+.
T Consensus 132 ~~~~~lS~G~kqrl--~ia~aL~~~P~lliLDE----------Pt~GLDp~~~~~~~~~l~~l~---~~g~~tvlissH~ 196 (293)
T COG1131 132 KKVRTLSGGMKQRL--SIALALLHDPELLILDE----------PTSGLDPESRREIWELLRELA---KEGGVTILLSTHI 196 (293)
T ss_pred cchhhcCHHHHHHH--HHHHHHhcCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHH---hCCCcEEEEeCCc
Confidence 33444444333333 35566777899999999 334567777777777776665 3344778888888
Q ss_pred CCCCC
Q psy6770 102 ADTLD 106 (362)
Q Consensus 102 ~~~ld 106 (362)
++.+.
T Consensus 197 l~e~~ 201 (293)
T COG1131 197 LEEAE 201 (293)
T ss_pred HHHHH
Confidence 87664
No 418
>KOG1942|consensus
Probab=54.76 E-value=39 Score=31.64 Aligned_cols=88 Identities=18% Similarity=0.133 Sum_probs=52.9
Q ss_pred CCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy6770 233 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVRENRY 311 (362)
Q Consensus 233 ~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~ 311 (362)
|+-+++.++- |+=-.=..+++ .++-++|++.-...-.+. ++-.++.+++.....|=.=--++..-|...|-..+++
T Consensus 348 PhGip~dllD--Rl~Iirt~~y~-~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~ 424 (456)
T KOG1942|consen 348 PHGIPPDLLD--RLLIIRTLPYD-EEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRK 424 (456)
T ss_pred CCCCCHHHhh--heeEEeeccCC-HHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCc
Confidence 5566777666 54333233344 445556666655433332 2334667777655555555556777777888778888
Q ss_pred CCCHHHHHHHHH
Q psy6770 312 IVLPKDFEKGYK 323 (362)
Q Consensus 312 ~v~~~~~~~a~~ 323 (362)
.|+.+|+++.-+
T Consensus 425 ~i~v~dvee~~~ 436 (456)
T KOG1942|consen 425 EISVEDVEEVTE 436 (456)
T ss_pred eeecccHHHHHH
Confidence 888888876644
No 419
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=54.73 E-value=22 Score=33.80 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=44.7
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 268 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l 268 (362)
..|.+|..|+... +++++|.+|+.++.|.|.++- |.-. +.|+.|+.++-...++...
T Consensus 122 aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 122 AANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RCQQ-QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred HHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hcee-eeCCCcCHHHHHHHHHHhc
Confidence 4677887776644 578899999999999999877 7766 8888898888777776543
No 420
>KOG3406|consensus
Probab=54.14 E-value=11 Score=30.08 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=25.6
Q ss_pred HHHHHHhhhCCcEEEEechhhhhhhcC
Q psy6770 3 LCTSFDTELVTAFIRVVGSEFVQKYLG 29 (362)
Q Consensus 3 LakaiA~e~~~~~~~v~~s~l~~~~~g 29 (362)
|++|+|++.+.|+|.|.....++.|.|
T Consensus 68 LVeALcaeh~iplikV~d~k~LGew~G 94 (134)
T KOG3406|consen 68 LVEALCAEHQIPLIKVGDAKELGEWAG 94 (134)
T ss_pred HHHHHHhhcCCCeEEeccchhhhhhhc
Confidence 789999999999999999999999988
No 421
>PHA02244 ATPase-like protein
Probab=53.57 E-value=29 Score=33.61 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=28.5
Q ss_pred CCeEEEEecCCC-----------CCCCccccCCCCcceeEEecCCCHHH
Q psy6770 222 GNLQVIMATNRA-----------DTLDPALLRPGRLDRKIEFPLPDRRQ 259 (362)
Q Consensus 222 ~~v~vi~aTn~~-----------~~lD~a~~RpgRfd~~i~~~~P~~~~ 259 (362)
.+.-+|+|+|.+ ..|++|++- ||- .|+|++|+..+
T Consensus 220 ~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~~E 265 (383)
T PHA02244 220 EDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEKIE 265 (383)
T ss_pred CCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcHHH
Confidence 467899999973 678999999 995 79999998533
No 422
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=53.52 E-value=59 Score=29.51 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=23.7
Q ss_pred echhhhhhhcCc--hHHHHHHHHHHHHHcCCeEEEecc
Q psy6770 19 VGSEFVQKYLGE--GPRMVRDVFRLAKENSPAIIFIDE 54 (362)
Q Consensus 19 ~~s~l~~~~~ge--se~~l~~~F~~a~~~~P~II~iDe 54 (362)
..+++.++|..+ +..+=|-.+.+|-...|-|+++||
T Consensus 119 gL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 119 GLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred CCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 334555666654 223334467777888999999998
No 423
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.00 E-value=75 Score=34.07 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=62.1
Q ss_pred HHHHHHHHH-HHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCC
Q psy6770 34 MVRDVFRLA-KENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRP 112 (362)
Q Consensus 34 ~l~~~F~~a-~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~ 112 (362)
.+..+|... .-.+|+.++|||.+-+- ++.....+.-|++. ..+++.+|.+|...-.+.-+=.|
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~----------~~~l~~~l~fLl~~-----~P~~l~lvv~SR~rP~l~la~lR- 179 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLIS----------DPALHEALRFLLKH-----APENLTLVVTSRSRPQLGLARLR- 179 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccC----------cccHHHHHHHHHHh-----CCCCeEEEEEeccCCCCccccee-
Confidence 455666544 44579999999999773 23344556666654 34566677666653333333222
Q ss_pred CcceeEEEccC----CCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 113 GRLDRKIEFPL----PDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 113 gRf~~~i~i~~----P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
-=+..++++. -+.+|-.+++....+ .++ +..+++.+...+.|+..
T Consensus 180 -lr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~L-d~~~~~~L~~~teGW~~ 228 (894)
T COG2909 180 -LRDELLEIGSEELRFDTEEAAAFLNDRGS-LPL-DAADLKALYDRTEGWAA 228 (894)
T ss_pred -ehhhHHhcChHhhcCChHHHHHHHHHcCC-CCC-ChHHHHHHHhhcccHHH
Confidence 1134555553 356666667665442 222 23467778888887644
No 424
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=52.97 E-value=96 Score=29.06 Aligned_cols=123 Identities=11% Similarity=0.104 Sum_probs=62.5
Q ss_pred HHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCC---CCc
Q psy6770 35 VRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT---LDP 107 (362)
Q Consensus 35 l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~---ld~ 107 (362)
+..++..+... .+-+|++++.+.+-.. . ......|...+.+.. .+.++++.+++.++. ...
T Consensus 46 ~~~~~~~~~t~pff~~~rlVvv~~~~~~~~~--------~---~~~~~~L~~~l~~~~-~~~~li~~~~~~~d~r~k~~k 113 (326)
T PRK07452 46 AIQALNEAMTPPFGSGGRLVWLKNSPLCQGC--------S---EELLAELERTLPLIP-ENTHLLLTNTKKPDGRLKSTK 113 (326)
T ss_pred HHHHHHHhcCCCCCCCceEEEEeCchhhccC--------C---HHHHHHHHHHHcCCC-CCcEEEEEeCCCcchHHHHHH
Confidence 66777776443 3568888886543211 1 123344555555542 345555555443321 222
Q ss_pred cccCCCcceeEEEccCC---CHHHHHHHHHHHHccCCCCC-cCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 108 ALLRPGRLDRKIEFPLP---DRRQKRLVFSTITAKMNLSD-EVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P---~~~~r~~il~~~~~~~~~~~-~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
.+.. +....++..| +.++....++..+...+..- ...+..++..+ |.....+.+-+.....+
T Consensus 114 ~l~k---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~-g~dl~~l~~EleKL~ly 179 (326)
T PRK07452 114 LLQK---LAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAV-GNDSRRLYNELEKLALY 179 (326)
T ss_pred HHHH---ceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CccHHHHHHHHHHHHHh
Confidence 2332 3345565544 45567778888887776542 22344455443 33555555555554444
No 425
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=51.98 E-value=24 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
=|..++.+|...|..+++..|+.+|+..|+
T Consensus 36 Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 36 FIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 366788899999989999999999999875
No 426
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=51.80 E-value=59 Score=30.87 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCC-CCc--HHHHHHHHHHHHhccCCCCCCCeEEEEEcCC
Q psy6770 31 GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQT-GAD--REVQRILLELLNQMDGFDQTTNVKVIMATNR 101 (362)
Q Consensus 31 se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~-~~~--~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~ 101 (362)
.++.+..+-..++...+.+|+||-+-++.+...-.+. +.. ....+.+.++|..+...-...++.+|.+...
T Consensus 118 ~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQv 191 (325)
T cd00983 118 GEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQL 191 (325)
T ss_pred HHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 3445555555566678999999999999874211111 111 1123445565555554434456667766443
No 427
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=51.71 E-value=60 Score=35.22 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=50.4
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhc----c--CC--CCCCCeEEEEEcCCCC-------------CCC
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM----D--GF--DQTTNVKVIMATNRAD-------------TLD 106 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l----d--~l--~~~~~v~vi~tTn~~~-------------~ld 106 (362)
.+++|||+|.+-. .....+.+.+.+= . |+ .-+.+.-||+|+|-.+ .++
T Consensus 559 GtL~IDEidkms~-----------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp 627 (915)
T PTZ00111 559 GVCCIDELDKCHN-----------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINIS 627 (915)
T ss_pred CeEEecchhhCCH-----------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCC
Confidence 6999999998732 2234455555321 1 11 1134688899988642 567
Q ss_pred ccccCCCcceeEE-EccCCCHHHHHHHHHHHHc
Q psy6770 107 PALLRPGRLDRKI-EFPLPDRRQKRLVFSTITA 138 (362)
Q Consensus 107 ~al~r~gRf~~~i-~i~~P~~~~r~~il~~~~~ 138 (362)
++++. |||..+ -++.|+.+.-..|-.+.++
T Consensus 628 ~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 628 PSLFT--RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred hHHhh--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 89999 999775 4577887776666555553
No 428
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=50.95 E-value=1.1e+02 Score=31.91 Aligned_cols=115 Identities=19% Similarity=0.359 Sum_probs=61.0
Q ss_pred hhCCcEEEEechhhhhhhcCchHHH------H-HHHHHHHH-----HcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 10 ELVTAFIRVVGSEFVQKYLGEGPRM------V-RDVFRLAK-----ENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 10 e~~~~~~~v~~s~l~~~~~gese~~------l-~~~F~~a~-----~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
..+.||+..++... +..+|.-+.. + ..-|..++ +-...++|+||++.+-+ .....+
T Consensus 179 ~~~aPvi~~~~p~~-~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~-----------~~q~~L 246 (637)
T PRK13765 179 KKTAPFVDATGAHA-GALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDL-----------ESQQSL 246 (637)
T ss_pred CCCCCEEEeCCCCH-HHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCH-----------HHHHHH
Confidence 35688998887763 3344432211 0 11122211 11237999999998821 122334
Q ss_pred HHHHHhcc----C---------C---CCCCCeEEEEEcCCC--CCCCccccCCCcce---eEEEcc--CCC-HHHHHHHH
Q psy6770 78 LELLNQMD----G---------F---DQTTNVKVIMATNRA--DTLDPALLRPGRLD---RKIEFP--LPD-RRQKRLVF 133 (362)
Q Consensus 78 ~~lL~~ld----~---------l---~~~~~v~vi~tTn~~--~~ld~al~r~gRf~---~~i~i~--~P~-~~~r~~il 133 (362)
..+|+.=. + + .-..++.+|+++|.. ..+||+|.. ||. ..+++. .|+ .+.+..++
T Consensus 247 lr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~ 324 (637)
T PRK13765 247 LTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLV 324 (637)
T ss_pred HHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHH
Confidence 44442110 0 0 011256788888774 577999988 886 556655 233 55566666
Q ss_pred HHHHc
Q psy6770 134 STITA 138 (362)
Q Consensus 134 ~~~~~ 138 (362)
+...+
T Consensus 325 ~~iaq 329 (637)
T PRK13765 325 RFVAQ 329 (637)
T ss_pred HHHHH
Confidence 54443
No 429
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=50.26 E-value=34 Score=24.25 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
-|..++++|...+....+..++.+|+..||+
T Consensus 36 rlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 36 RLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 4678999999998888899999999999874
No 430
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=49.03 E-value=85 Score=30.40 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCeEEEecccccccccc
Q psy6770 33 RMVRDVFRLAKENSPAIIFIDEIDAIATKR 62 (362)
Q Consensus 33 ~~l~~~F~~a~~~~P~II~iDeiD~l~~~r 62 (362)
..+..+++.+....|.+|+||++..+....
T Consensus 145 ~~le~I~~~i~~~~~~lVVIDSIq~l~~~~ 174 (372)
T cd01121 145 TNLEDILASIEELKPDLVIIDSIQTVYSSE 174 (372)
T ss_pred CcHHHHHHHHHhcCCcEEEEcchHHhhccc
Confidence 346677788888899999999999987543
No 431
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=48.84 E-value=1.4e+02 Score=27.38 Aligned_cols=133 Identities=9% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcC----CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCcc--
Q psy6770 35 VRDVFRLAKENS----PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA-- 108 (362)
Q Consensus 35 l~~~F~~a~~~~----P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~a-- 108 (362)
...+++.+...+ .-+|+|++++.+..+ .....++..+.. ..+..++|..++.++.-...
T Consensus 31 ~~~l~~~~~~~slf~~~kliii~~~~~~~~~-------------~~~~~L~~~l~~--~~~~~~~i~~~~~~~~~~~~~k 95 (302)
T TIGR01128 31 WNQLLEEAQTLPLFSERRLVELRNPEGKPGA-------------KGLKALEEYLAN--PPPDTLLLIEAPKLDKRKKLTK 95 (302)
T ss_pred HHHHHHHhhccCcccCCeEEEEECCCCCCCH-------------HHHHHHHHHHhc--CCCCEEEEEecCCCCHhHHHHH
Q ss_pred ccCCCc--ceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCccc
Q psy6770 109 LLRPGR--LDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALL 185 (362)
Q Consensus 109 l~r~gR--f~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i 185 (362)
... - -...+++..|+..+....++..+...+..-+.+...+.....|.....+.+-+......+... .++...+
T Consensus 96 ~~~--~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~-~It~e~I 171 (302)
T TIGR01128 96 WLK--ALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDG-KITLEDV 171 (302)
T ss_pred HHH--HhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCC-CCCHHHH
No 432
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=48.32 E-value=54 Score=28.88 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=14.5
Q ss_pred cCCeEEEeccccccccc
Q psy6770 45 NSPAIIFIDEIDAIATK 61 (362)
Q Consensus 45 ~~P~II~iDeiD~l~~~ 61 (362)
..+.+|+||-+.+++..
T Consensus 106 ~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 106 ENVGLIVLDSATSLYRL 122 (225)
T ss_pred hcccEEEEeCcHHHhHH
Confidence 57899999999998753
No 433
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=47.67 E-value=87 Score=27.08 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=36.0
Q ss_pred HHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 39 FRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 39 F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
+-.|-...|.++++||-- .+-|......+.+++.++.. . +..+|.+|++++.++.
T Consensus 140 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 140 LARLWLTRAPLWILDEPF----------TAIDKQGVARLEALLAQHAE---Q-GGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHHHhcCCCEEEEeCCC----------ccCCHHHHHHHHHHHHHHHH---C-CCEEEEEecChhhhcc
Confidence 455556689999999954 23455556667777766531 1 3457778888887763
No 434
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=47.51 E-value=1.2e+02 Score=29.74 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=56.5
Q ss_pred HHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHH
Q psy6770 3 LCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLN 82 (362)
Q Consensus 3 LakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~ 82 (362)
|.+-+.....-.++.++..+...... ....+...+..+.....+.||+|||..+= ...+.+..+.+
T Consensus 53 ll~~l~~~~~~~~iy~~~~d~~~~~~--~l~d~~~~~~~~~~~~~~yifLDEIq~v~------------~W~~~lk~l~d 118 (398)
T COG1373 53 LLKLLIKGLLEEIIYINFDDLRLDRI--ELLDLLRAYIELKEREKSYIFLDEIQNVP------------DWERALKYLYD 118 (398)
T ss_pred HHHHHHhhCCcceEEEEecchhcchh--hHHHHHHHHHHhhccCCceEEEecccCch------------hHHHHHHHHHc
Confidence 34555555544455555544433221 11112222222222255899999999651 12355666552
Q ss_pred hccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHH
Q psy6770 83 QMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 131 (362)
Q Consensus 83 ~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~ 131 (362)
.. ..++++.+++...-.-..+-.=+||. ..+++.+-+..|...
T Consensus 119 ~~-----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 119 RG-----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred cc-----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 21 11455555555544444444556794 667777778777754
No 435
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=47.45 E-value=99 Score=26.48 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=34.8
Q ss_pred HHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 39 FRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 39 F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
+-.|-...|.++++||--+ +.|......+..++.++. . .+..+|.+|+++..+..
T Consensus 134 la~al~~~p~~lllDEP~~----------~LD~~~~~~l~~~l~~~~---~-~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 134 IARLIACQSDLWLLDEVET----------NLSKENRDLLNNLIVMKA---N-SGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCccccch
Confidence 4455556899999999553 344555666666665432 1 24567778888776654
No 436
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=46.45 E-value=1.5e+02 Score=26.88 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=28.5
Q ss_pred CCeEEEecccccccccc-------C-CCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEE
Q psy6770 46 SPAIIFIDEIDAIATKR-------F-DAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 98 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r-------~-~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~t 98 (362)
.+.++||||+..+...- + ..+.+.....-..+.+++..-..+..++.+..+.|
T Consensus 103 ~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T 163 (249)
T cd01128 103 KDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIAT 163 (249)
T ss_pred CCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeee
Confidence 57899999999875432 1 11122233333445566654333334556666644
No 437
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=46.34 E-value=95 Score=26.41 Aligned_cols=52 Identities=21% Similarity=0.407 Sum_probs=32.8
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 103 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~ 103 (362)
.+-.|-...|.++++||-- .+-|......+.+++.++.. . +..+|.+|+.++
T Consensus 137 ~laral~~~p~llllDEPt----------~~LD~~~~~~~~~~l~~~~~---~-~~tili~sH~~~ 188 (190)
T TIGR01166 137 AIAGAVAMRPDVLLLDEPT----------AGLDPAGREQMLAILRRLRA---E-GMTVVISTHDVD 188 (190)
T ss_pred HHHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHHH---c-CCEEEEEeeccc
Confidence 3455566789999999933 34455556667777766532 2 345666666654
No 438
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=46.28 E-value=37 Score=29.68 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=36.6
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhc-cCCC---------CCCCeEEEEEcCCCCCC-CccccCCCcce
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM-DGFD---------QTTNVKVIMATNRADTL-DPALLRPGRLD 116 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l-d~l~---------~~~~v~vi~tTn~~~~l-d~al~r~gRf~ 116 (362)
-||.+||++.+..+ . ...++.+++.- +.++ .....++|+|||..+-+ |+.=-| ||
T Consensus 97 ~iveldEl~~~~k~-------~----~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf- 162 (198)
T PF05272_consen 97 WIVELDELDGLSKK-------D----VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF- 162 (198)
T ss_pred HheeHHHHhhcchh-------h----HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-
Confidence 68899999986511 1 23455555432 2221 12347789999998755 555556 77
Q ss_pred eEEEccC
Q psy6770 117 RKIEFPL 123 (362)
Q Consensus 117 ~~i~i~~ 123 (362)
..|++..
T Consensus 163 ~~v~v~~ 169 (198)
T PF05272_consen 163 WPVEVSK 169 (198)
T ss_pred EEEEEcC
Confidence 5555554
No 439
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=46.05 E-value=68 Score=34.50 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=54.5
Q ss_pred cEEEEechhhhhhhcCchHHHHHHHHHHHH---HcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCC
Q psy6770 14 AFIRVVGSEFVQKYLGEGPRMVRDVFRLAK---ENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQT 90 (362)
Q Consensus 14 ~~~~v~~s~l~~~~~gese~~l~~~F~~a~---~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~ 90 (362)
+++.++.+++.+.-.. ..-.+.-+|..+. ...|.++++||....+.. +.....+.+++..+. .
T Consensus 608 ~~~~fdl~~l~~~~~~-~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~~---------~~~~~~i~~~lk~~R----K 673 (800)
T PRK13898 608 RVFGFEMGELLKDPVS-LAPVLLYLFHRISISLDGTPSMIVLDEAWALIDN---------PVFAPKIKDWLKVLR----K 673 (800)
T ss_pred cEEEEEchhhcCChhh-HHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCCC---------HHHHHHHHHHHHHHH----H
Confidence 4566666666543111 1123334554432 346999999999887631 233445555555443 2
Q ss_pred CCeEEEEEcCCCCCCC-----ccccCCCcceeEEEccCCCH
Q psy6770 91 TNVKVIMATNRADTLD-----PALLRPGRLDRKIEFPLPDR 126 (362)
Q Consensus 91 ~~v~vi~tTn~~~~ld-----~al~r~gRf~~~i~i~~P~~ 126 (362)
.+..++.+|..++++- .+++. -....|.+|.|..
T Consensus 674 ~~~~~i~~TQ~~~d~~~s~~~~~i~~--~~~t~I~lpn~~a 712 (800)
T PRK13898 674 LNTFVIFATQSVEDASKSAISDTLVQ--QTATQIFLPNLKA 712 (800)
T ss_pred cCCEEEEEeCCHHHHHhChhHHHHHH--hCCeEEEcCChhh
Confidence 2455677777776543 34444 4566778876653
No 440
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=45.98 E-value=1.2e+02 Score=30.73 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=63.8
Q ss_pred hhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhh
Q psy6770 206 LVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSD-EVDLEDYVA 284 (362)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~-~~~~~~la~ 284 (362)
..+|.+|..+.... .+|++|.||--|+.+++-++- |.- ++.|..-+.++-...++.++.+-.+.- +-.+..+++
T Consensus 134 ~afNALLKTLEEPP--~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~ 208 (515)
T COG2812 134 QAFNALLKTLEEPP--SHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIAR 208 (515)
T ss_pred HHHHHHhcccccCc--cCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Confidence 35778887666554 579999999999999999887 542 234455677787888888887665542 224666777
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q psy6770 285 RPDRISGADINAICQEAGMH 304 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~ 304 (362)
..+| |-.|...+...|.-.
T Consensus 209 ~a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 209 AAEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred HcCC-ChhhHHHHHHHHHHc
Confidence 7665 456777776666443
No 441
>KOG2004|consensus
Probab=45.63 E-value=27 Score=36.66 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=33.9
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCH--HHHHHHHHHHh
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDR--RQKRLVFSTIT 268 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~--~~r~~i~~~~l 268 (362)
.+|++|+|.|..+.|+++++- |... +.+|.+ ++...|-+.||
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RMEv---IelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RMEV---IELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhhe---eeccCccHHHHHHHHHHhh
Confidence 479999999999999999988 7653 445544 77778888888
No 442
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=45.36 E-value=71 Score=33.59 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=64.5
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh-----ccCCCC-CCC-----CHHHHhhC---CC
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT-----AKMNLS-DEV-----DLEDYVAR---PD 287 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l-----~~~~~~-~~~-----~~~~la~~---~~ 287 (362)
.+|++|+|.|..+.|+..|+- |.+ .|.++==..++..+|-+.|| +...+. .++ .+..+.+. -.
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREA 541 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREA 541 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhh
Confidence 479999999999999999998 775 45555456688888999888 222222 111 12233322 12
Q ss_pred CCC--HHHHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHh
Q psy6770 288 RIS--GADINAICQEAGMHAVRENRY---IVLPKDFEKGYKKCA 326 (362)
Q Consensus 288 g~s--gadi~~~~~~a~~~a~~~~~~---~v~~~~~~~a~~~~~ 326 (362)
|.= -.+|..+|+.++..-+..... .++..++.+-+...+
T Consensus 542 GVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~ 585 (782)
T COG0466 542 GVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPV 585 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcc
Confidence 222 237888888888887765443 345556666554433
No 443
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=44.99 E-value=78 Score=33.08 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=63.5
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHh----ccC----------CC-CCCCeEEEEEcCC-----CCCCCc
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ----MDG----------FD-QTTNVKVIMATNR-----ADTLDP 107 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~----ld~----------l~-~~~~v~vi~tTn~-----~~~ld~ 107 (362)
.|+||||+..|... .....|+.++.. +.. .. -.....+|+..|. ....|+
T Consensus 227 GVLiIdei~lL~~~----------~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~ 296 (647)
T COG1067 227 GVLIIDEIGLLAQP----------LQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDR 296 (647)
T ss_pred cEEEEEhhhhhCcH----------HHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCH
Confidence 79999999988532 122344444432 000 00 1233555665554 234455
Q ss_pred cccCCCcceeEEEccCC-CHHHHHHHHHHHHccCCCC---CcCCH------HHHHhcC------CCCcHhhHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLP-DRRQKRLVFSTITAKMNLS---DEVDL------EDYVARP------DRISGADINAICQEVI 171 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P-~~~~r~~il~~~~~~~~~~---~~~dl------~~la~~t------~g~s~~di~~l~~~a~ 171 (362)
.++.--+....+.-++| +.+.|..+|+.+.+..... +.++. ...+.+. --.++.+|.++++.|.
T Consensus 297 ~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~ 376 (647)
T COG1067 297 SRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAG 376 (647)
T ss_pred HHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhh
Confidence 55551122244555677 6888999998877654322 12221 1222222 2257778888888776
Q ss_pred Hhhccc
Q psy6770 172 MATNRA 177 (362)
Q Consensus 172 ~~~~r~ 177 (362)
..+...
T Consensus 377 ~ia~~~ 382 (647)
T COG1067 377 DIAVSE 382 (647)
T ss_pred HHHhcC
Confidence 665543
No 444
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=44.87 E-value=60 Score=31.36 Aligned_cols=78 Identities=9% Similarity=0.074 Sum_probs=51.2
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARP 286 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~ 286 (362)
..|.+|..+.... .+.++|.+|+.++.+.|.+.. |. ..+.|+.|+.++-.+++....... .+..+..+++.+
T Consensus 157 aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~~---~~~~~~~l~~~s 228 (365)
T PRK07471 157 AANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPDL---PDDPRAALAALA 228 (365)
T ss_pred HHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcccC---CHHHHHHHHHHc
Confidence 4566776665432 467888899999999887655 65 578888899888888887754321 111224566666
Q ss_pred CCCCHH
Q psy6770 287 DRISGA 292 (362)
Q Consensus 287 ~g~sga 292 (362)
.|--+.
T Consensus 229 ~Gsp~~ 234 (365)
T PRK07471 229 EGSVGR 234 (365)
T ss_pred CCCHHH
Confidence 665543
No 445
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=44.58 E-value=83 Score=29.12 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=15.8
Q ss_pred hcCCCCcHhhHHHHHHHHHH
Q psy6770 153 ARPDRISGADINAICQEVIM 172 (362)
Q Consensus 153 ~~t~g~s~~di~~l~~~a~~ 172 (362)
...-|||..+++.+++....
T Consensus 220 ~~~~GFT~~Ev~~ll~~~~~ 239 (284)
T PF09820_consen 220 SEYFGFTEEEVETLLKYYIE 239 (284)
T ss_pred hhhcCcCHHHHHHHHHHHHH
Confidence 34679999999999988643
No 446
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=44.20 E-value=81 Score=27.54 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=34.1
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+.. ..+..+|.+|++++.+
T Consensus 151 ~laral~~~p~illlDEPt----------~~LD~~~~~~l~~~l~~~~~---~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPT----------GNLDNNNAKIIFDLMLELNR---ELNTSFLVVTHDLELA 205 (221)
T ss_pred HHHHHHhCCCCEEEEeCCC----------CcCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 3455556789999999943 33455556667777765531 1234567777776544
No 447
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=43.96 E-value=1.4e+02 Score=25.49 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=25.1
Q ss_pred cCCeEEEeccccccccccCCCCCCCcHH-HHHHHHHHHHhccCCCCCCCeEEEEEcCCCC
Q psy6770 45 NSPAIIFIDEIDAIATKRFDAQTGADRE-VQRILLELLNQMDGFDQTTNVKVIMATNRAD 103 (362)
Q Consensus 45 ~~P~II~iDeiD~l~~~r~~~~~~~~~~-~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~ 103 (362)
..|.++++||.-+= .+.. ...+...++..+.. ..+..+|.+|+.++
T Consensus 77 ~~~~llllDEp~~g----------~d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 77 TENSLVLLDELGRG----------TSTYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred CCCeEEEEecCCCC----------CCHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 47999999996532 2222 12333444444331 12345677777764
No 448
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=43.56 E-value=1e+02 Score=26.46 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=35.9
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
.+-.|-...|.++++||-- .+.|......+.++|..+. .. +..+|.+|+.+..++
T Consensus 137 ~laral~~~p~~lilDEP~----------~~LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~ 191 (200)
T PRK13540 137 ALLRLWMSKAKLWLLDEPL----------VALDELSLLTIITKIQEHR---AK-GGAVLLTSHQDLPLN 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCC----------cccCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCchhcc
Confidence 4556666789999999943 3345555667777776543 12 345777777777665
No 449
>COG1485 Predicted ATPase [General function prediction only]
Probab=43.29 E-value=54 Score=31.43 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=42.3
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCC-CCCCCccccCCCcceeEEEccCCCH
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR-ADTLDPALLRPGRLDRKIEFPLPDR 126 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~-~~~ld~al~r~gRf~~~i~i~~P~~ 126 (362)
-|++|||++- .|-...-++..|+..|= ..+|++++|+|. |+++=+ +++...-.+|
T Consensus 132 ~vLCfDEF~V-----------tDI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~-----dGlqR~~FLP---- 187 (367)
T COG1485 132 RVLCFDEFEV-----------TDIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYK-----DGLQRERFLP---- 187 (367)
T ss_pred CEEEeeeeee-----------cChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcc-----cchhHHhhHH----
Confidence 5999999873 11122344555554443 358999999997 344322 2333222222
Q ss_pred HHHHHHHHHHHccCCCCCcCCH
Q psy6770 127 RQKRLVFSTITAKMNLSDEVDL 148 (362)
Q Consensus 127 ~~r~~il~~~~~~~~~~~~~dl 148 (362)
-..+++.++.-..+++..|+
T Consensus 188 --~I~li~~~~~v~~vD~~~DY 207 (367)
T COG1485 188 --AIDLIKSHFEVVNVDGPVDY 207 (367)
T ss_pred --HHHHHHHheEEEEecCCccc
Confidence 24566777776666665554
No 450
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=43.24 E-value=1.4e+02 Score=23.64 Aligned_cols=58 Identities=3% Similarity=0.022 Sum_probs=35.9
Q ss_pred HHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccc
Q psy6770 4 CTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 4 akaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~ 61 (362)
++..|...|+....+-...-.+.+....-..+..+.+.++.....+|++.++|.|..+
T Consensus 23 ~~~~a~~~g~~i~~~~~d~~~s~~~~~~R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~ 80 (137)
T cd00338 23 LREYAARNGLEVVGEYEDAGSSATSLVDRPGLQRLLADVKAGKIDVVLVEKLDRLSRN 80 (137)
T ss_pred HHHHHHHCCCEEEEEEEeCCCCcccccCCHHHHHHHHHHHcCCCCEEEEEecchhhCC
Confidence 3455666676654433322222211223456778888888777899999999999753
No 451
>PF13245 AAA_19: Part of AAA domain
Probab=43.00 E-value=18 Score=26.25 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=21.1
Q ss_pred CChhhhhhhhhhhhhhhhhhh--hccCCeEEEEecCC
Q psy6770 198 LPDRRQKRLVFSTITAKMNFM--LNIGNLQVIMATNR 232 (362)
Q Consensus 198 ~~~~~~k~~~~~~~l~~~~~~--~~~~~v~vi~aTn~ 232 (362)
.|||+||+..+-..+..+-.- ...++|++++-||.
T Consensus 17 g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~ 53 (76)
T PF13245_consen 17 GPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRA 53 (76)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHH
Confidence 489999996665555544321 11456777766653
No 452
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=42.95 E-value=66 Score=26.80 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=35.5
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
.+-.|-...|.++++||-- .+-|......+.+++.++.. . +..+|.+|++++.+.
T Consensus 92 ~laral~~~p~illlDEP~----------~~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~~~~ 146 (163)
T cd03216 92 EIARALARNARLLILDEPT----------AALTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHHhcCCCEEEEECCC----------cCCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 4566777889999999943 23455556677777766531 2 345666777766443
No 453
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=42.80 E-value=77 Score=28.07 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=34.4
Q ss_pred HHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 39 FRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 39 F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
+-.|-...|.++++||-- .+-|......+.+++.++. ...+..+|.+|++++.+.
T Consensus 156 la~al~~~p~lllLDEPt----------~~LD~~~~~~l~~~l~~~~---~~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 156 IARALVNNPRLVLADEPT----------GNLDARNADSIFQLLGELN---RLQGTAFLVVTHDLQLAK 210 (233)
T ss_pred HHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHHH
Confidence 455556789999999944 2345555666777776553 122445777777765543
No 454
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=42.27 E-value=91 Score=27.22 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=36.8
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
.+-.+-...|.++++||-- ++-|......+.+++.++.. . +..+|.+|++++.++.
T Consensus 147 ~laral~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~~---~-~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPY----------ANLDLEGITLVNRMISAHLR---G-GGAALVTTHGAYAAPP 202 (214)
T ss_pred HHHHHHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHHh---C-CCEEEEEecChhhhhh
Confidence 4455566789999999954 23455566777777766532 2 3357778888777764
No 455
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=42.14 E-value=1.1e+02 Score=26.98 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=35.1
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+.. ..+..+|.+|+.++.+.
T Consensus 142 ~laral~~~p~llllDEP~----------~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPT----------VGLDPASRAAIVAHVRALCR---DQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHhcCCCEEEEcCCc----------cCCCHHHHHHHHHHHHHHHH---hCCCEEEEEecChhhHh
Confidence 4566666789999999944 33455556666666665431 12345677777776653
No 456
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=41.67 E-value=41 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
-+.+++++|...+-..++..|+.+|+..|++
T Consensus 35 rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 35 RIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 4667888998888888999999999988863
No 457
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=41.47 E-value=1.1e+02 Score=25.90 Aligned_cols=81 Identities=9% Similarity=0.128 Sum_probs=45.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHH-----------------HHHHHHHH--cCCeEEEeccccccccc
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVR-----------------DVFRLAKE--NSPAIIFIDEIDAIATK 61 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~-----------------~~F~~a~~--~~P~II~iDeiD~l~~~ 61 (362)
|.+|..++.+++.+.+.+........ |..+++. .+-+.+.. .++.+|+||-+..+..+
T Consensus 15 S~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlID~Lt~~~~n 91 (170)
T PRK05800 15 SRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLVDCLTTWVTN 91 (170)
T ss_pred HHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEehhHHHHHHH
Confidence 57899999999988888877654322 2222221 12222222 34678999999988755
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhccC
Q psy6770 62 RFDAQTGADREVQRILLELLNQMDG 86 (362)
Q Consensus 62 r~~~~~~~~~~~~~~l~~lL~~ld~ 86 (362)
.-... ........+..++..+..
T Consensus 92 ~l~~~--~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 92 LLFEE--GEEAIAAEIDALLAALQQ 114 (170)
T ss_pred Hhccc--chHHHHHHHHHHHHHHHc
Confidence 42111 012234455566666553
No 458
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=41.27 E-value=66 Score=28.59 Aligned_cols=53 Identities=21% Similarity=0.415 Sum_probs=35.7
Q ss_pred HHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 40 RLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 40 ~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
.+|--+.|+|+++|| ..++-|-...+.+.+++.++. +.+-.||.+|...+.+.
T Consensus 145 ARAlvh~P~i~vlDE----------P~sGLDi~~~r~~~dfi~q~k----~egr~viFSSH~m~Eve 197 (245)
T COG4555 145 ARALVHDPSILVLDE----------PTSGLDIRTRRKFHDFIKQLK----NEGRAVIFSSHIMQEVE 197 (245)
T ss_pred HHHHhcCCCeEEEcC----------CCCCccHHHHHHHHHHHHHhh----cCCcEEEEecccHHHHH
Confidence 445567899999998 234556666778888887765 33556777777665543
No 459
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=40.73 E-value=41 Score=28.98 Aligned_cols=61 Identities=26% Similarity=0.420 Sum_probs=38.5
Q ss_pred HcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccC
Q psy6770 44 ENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 123 (362)
Q Consensus 44 ~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~ 123 (362)
+..|.|+++||+-+-+- ...++-++.++-.+= ...+|-|+|.|..++. + .| .++++|.+..
T Consensus 149 q~~P~ILLLDE~TsALD----------~~nkr~ie~mi~~~v---~~q~vAv~WiTHd~dq---a-~r--ha~k~itl~~ 209 (223)
T COG4619 149 QFMPKILLLDEITSALD----------ESNKRNIEEMIHRYV---REQNVAVLWITHDKDQ---A-IR--HADKVITLQP 209 (223)
T ss_pred hcCCceEEecCchhhcC----------hhhHHHHHHHHHHHh---hhhceEEEEEecChHH---H-hh--hhheEEEecc
Confidence 45699999999876542 222344444443222 2457899999987654 2 23 6777787754
No 460
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=40.50 E-value=1.2e+02 Score=26.07 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=35.7
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
.+-.|-...|.++++||-- ++.|......+.+++.++. .. +..+|.+|+++..+..
T Consensus 135 ~laral~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~~-g~tiii~sH~~~~~~~ 190 (201)
T cd03231 135 ALARLLLSGRPLWILDEPT----------TALDKAGVARFAEAMAGHC---AR-GGMVVLTTHQDLGLSE 190 (201)
T ss_pred HHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH---hC-CCEEEEEecCchhhhh
Confidence 3556666789999999944 3445555666777776543 12 3456777777766554
No 461
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=40.40 E-value=1.8e+02 Score=27.41 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=44.6
Q ss_pred HHHhhhCCcEEE-Eechhhhhhhc-CchHHHHHHHHHHHHHcCC--eEEEeccccc-cccccCCCCCCCcHHHHHHHHHH
Q psy6770 6 SFDTELVTAFIR-VVGSEFVQKYL-GEGPRMVRDVFRLAKENSP--AIIFIDEIDA-IATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 6 aiA~e~~~~~~~-v~~s~l~~~~~-gese~~l~~~F~~a~~~~P--~II~iDeiD~-l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
..|++.|+.|+. |++...+. +. .+..+.|..=|+.....+. --|++|||+. ++................+++.+
T Consensus 63 ~~a~~~~V~Fv~aisPg~~~~-~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v 141 (306)
T PF07555_consen 63 DAAKANGVDFVYAISPGLDIC-YSSEEDFEALKAKFDQLYDLGVRSFAILFDDIDGDLWHCDKDDFNSLAQAQARLLNRV 141 (306)
T ss_dssp HHHHHTT-EEEEEEBGTTT---TSHHHHHHHHHHHHHHHHCTT--EEEEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEECcccccc-cCcHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCccccccccccchHHHHHHHHHHHH
Confidence 357888888876 66654433 22 1222333333444444442 4789999995 33322222222233446778888
Q ss_pred HHhccCCCCCCCeEEEEEcCCC
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~ 102 (362)
.+++...+....-++++-|..-
T Consensus 142 ~~~l~~~~~~~~~l~~cPt~Y~ 163 (306)
T PF07555_consen 142 NKELIKKKGDVKPLIFCPTEYC 163 (306)
T ss_dssp HHHTTTCSSSS--EEEE-SS-S
T ss_pred HHHHhccCCCCCCceEEChhhc
Confidence 7777654333334555555543
No 462
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=39.58 E-value=95 Score=29.39 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=38.4
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHH
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 266 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~ 266 (362)
..|.+|..|+... +++++|.+|+.+..|-|.+.- |. ..++|..|+.++-...++.
T Consensus 126 a~NaLLK~LEEPp--~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 126 AANSLLKFLEEPS--GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHHHHhcCCC--CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 4567777666544 567788888889999998765 54 4577777877776555543
No 463
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=39.52 E-value=73 Score=27.76 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=34.5
Q ss_pred HHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 39 FRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 39 F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
+-.|-...|.++++||-- ++-|......+.+++.++.. ..+..+|.+|+.++.+
T Consensus 151 la~al~~~p~lllLDEP~----------~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~~ 204 (218)
T cd03255 151 IARALANDPKIILADEPT----------GNLDSETGKEVMELLRELNK---EAGTTIVVVTHDPELA 204 (218)
T ss_pred HHHHHccCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHHH---hcCCeEEEEECCHHHH
Confidence 455556689999999943 34455566677777766531 1245577777776544
No 464
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=39.31 E-value=82 Score=27.45 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHcCCeEEEeccccccccccCCCCCCCcHHHHH-HHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEE
Q psy6770 41 LAKENSPAIIFIDEIDAIATKRFDAQTGADREVQR-ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI 119 (362)
Q Consensus 41 ~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~-~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i 119 (362)
.+-...|.++++||-.+= .+..... .+.+++.++. ...+.-+|.+|+.++.+ . .+|.++
T Consensus 134 ~al~~~p~illlDEP~~~----------LD~~~~~~~l~~~l~~~~---~~~~~~iiiitH~~~~~-----~--~~d~i~ 193 (204)
T cd03240 134 ETFGSNCGILALDEPTTN----------LDEENIEESLAEIIEERK---SQKNFQLIVITHDEELV-----D--AADHIY 193 (204)
T ss_pred HHhccCCCEEEEcCCccc----------cCHHHHHHHHHHHHHHHH---hccCCEEEEEEecHHHH-----h--hCCEEE
Confidence 344568999999996643 3333344 5556665443 22133466677765433 2 456666
Q ss_pred Ecc
Q psy6770 120 EFP 122 (362)
Q Consensus 120 ~i~ 122 (362)
.+.
T Consensus 194 ~l~ 196 (204)
T cd03240 194 RVE 196 (204)
T ss_pred EEe
Confidence 653
No 465
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=38.54 E-value=78 Score=27.76 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=34.7
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.+++.++.. ..+..+|.+|+.++.+
T Consensus 155 ~laral~~~p~lllLDEPt----------~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~~ 209 (228)
T cd03257 155 AIARALALNPKLLIADEPT----------SALDVSVQAQILDLLKKLQE---ELGLTLLFITHDLGVV 209 (228)
T ss_pred HHHHHHhcCCCEEEecCCC----------CCCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHH
Confidence 3555566789999999944 23455556677777766531 2134577777776544
No 466
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.38 E-value=85 Score=27.23 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=34.3
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
.+-.|-...|.++++||--+ +.|......+.+++.++. ...+..+|.+|++++.+.
T Consensus 138 ~ia~al~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFA----------ALDPALRAEMLDLVLDLH---AETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHH
Confidence 34555567899999999442 345555566666666543 122445667777766553
No 467
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=38.23 E-value=68 Score=30.26 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=55.6
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARP 286 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~ 286 (362)
..|.+|..|+... +.++|..|+.++.|-|.+.- |. ..+.|+.|+.++-.+.++.....- ..+.+...++..+
T Consensus 140 aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~l~~~a 211 (314)
T PRK07399 140 AANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPELLALA 211 (314)
T ss_pred HHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc--cchhHHHHHHHHc
Confidence 4577887776655 44677777889999999876 75 678888899988888887754321 1122346777777
Q ss_pred CCCCHHHHH
Q psy6770 287 DRISGADIN 295 (362)
Q Consensus 287 ~g~sgadi~ 295 (362)
.|--|.-+.
T Consensus 212 ~Gs~~~al~ 220 (314)
T PRK07399 212 QGSPGAAIA 220 (314)
T ss_pred CCCHHHHHH
Confidence 776665544
No 468
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.10 E-value=34 Score=30.47 Aligned_cols=70 Identities=20% Similarity=0.344 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccc
Q psy6770 30 EGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPAL 109 (362)
Q Consensus 30 ese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al 109 (362)
...+.|+.+.+..+...-.||+||-+..+.... + ...+.+|++.+..+-..++ +|..|-+|..+|.+.
T Consensus 107 ~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~---~~~vl~fm~~~r~l~d~gK--vIilTvhp~~l~e~~ 174 (235)
T COG2874 107 SARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------S---EDAVLNFMTFLRKLSDLGK--VIILTVHPSALDEDV 174 (235)
T ss_pred HHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------c---HHHHHHHHHHHHHHHhCCC--EEEEEeChhhcCHHH
Confidence 446678888888888888999999998886432 1 2345555555554433333 444466788898887
Q ss_pred cC
Q psy6770 110 LR 111 (362)
Q Consensus 110 ~r 111 (362)
+-
T Consensus 175 ~~ 176 (235)
T COG2874 175 LT 176 (235)
T ss_pred HH
Confidence 76
No 469
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=37.79 E-value=1.1e+02 Score=26.11 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=38.2
Q ss_pred HHHHHHHcC--CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcc
Q psy6770 38 VFRLAKENS--PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRL 115 (362)
Q Consensus 38 ~F~~a~~~~--P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf 115 (362)
.+-.|-... |.++++||--+ +.+......+.+++..+. . .+.-+|.+|+.++.+ + .+
T Consensus 97 ~laral~~~~~p~llLlDEPt~----------~LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~--~~ 155 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPST----------GLHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S--SA 155 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H--hC
Confidence 455666678 99999999542 344555556666665543 2 234566677776533 2 45
Q ss_pred eeEEEcc
Q psy6770 116 DRKIEFP 122 (362)
Q Consensus 116 ~~~i~i~ 122 (362)
|+.+.+.
T Consensus 156 d~i~~l~ 162 (176)
T cd03238 156 DWIIDFG 162 (176)
T ss_pred CEEEEEC
Confidence 5666664
No 470
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=37.77 E-value=1.7e+02 Score=25.04 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=34.1
Q ss_pred HHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 39 FRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 39 F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
+-.|-...|.++++||--+ +.|......+.+++..+.. . +..+|.+|+++..+.
T Consensus 138 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~~---~-~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 138 LARLWLSRAPLWILDEPTT----------ALDKAGVALLAGLLRAHLA---R-GGIVLLTTHQDLGLV 191 (198)
T ss_pred HHHHHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHHh---C-CCEEEEEEccccccc
Confidence 4555566899999999542 3455556667777765531 2 335777777775543
No 471
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=37.63 E-value=33 Score=34.69 Aligned_cols=112 Identities=22% Similarity=0.422 Sum_probs=62.7
Q ss_pred cHHHHHHhhhC---CcEEEEechhh----h-hhhcCchHHHHHHHHHHHHHc-C--------CeEEEeccccccccccCC
Q psy6770 2 LLCTSFDTELV---TAFIRVVGSEF----V-QKYLGEGPRMVRDVFRLAKEN-S--------PAIIFIDEIDAIATKRFD 64 (362)
Q Consensus 2 lLakaiA~e~~---~~~~~v~~s~l----~-~~~~gese~~l~~~F~~a~~~-~--------P~II~iDeiD~l~~~r~~ 64 (362)
++|++|=+... -||+.++|..+ + +..+|- -+-.|--|... + -.-||+|||-.+-
T Consensus 283 lfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGy----e~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp----- 353 (560)
T COG3829 283 LFARAIHNLSPRANGPFIAINCAAIPETLLESELFGY----EKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP----- 353 (560)
T ss_pred HHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCc----CCccccccccCCCCcceeeccCCeEEehhhccCC-----
Confidence 57787766655 49999999643 2 112221 11234444432 1 2579999998662
Q ss_pred CCCCCcHHHHHHHHHHHHh--ccCCCC----CCCeEEEEEcCCCCCCCccccCCCcce-------eEEEccCCCHHHHHH
Q psy6770 65 AQTGADREVQRILLELLNQ--MDGFDQ----TTNVKVIMATNRADTLDPALLRPGRLD-------RKIEFPLPDRRQKRL 131 (362)
Q Consensus 65 ~~~~~~~~~~~~l~~lL~~--ld~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~ 131 (362)
.....-+..+|++ +..+-. .-.|=+|+|||.. +-. +...|+|. .++.+..|...+|.+
T Consensus 354 ------l~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~n--L~~-~i~~G~FReDLYYRLNV~~i~iPPLReR~e 424 (560)
T COG3829 354 ------LPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRN--LEK-MIAEGTFREDLYYRLNVIPITIPPLRERKE 424 (560)
T ss_pred ------HHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcC--HHH-HHhcCcchhhheeeeceeeecCCCcccCcc
Confidence 2334445555543 222211 2358899999963 333 33346664 345677788777655
No 472
>KOG1803|consensus
Probab=37.59 E-value=16 Score=37.27 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=26.9
Q ss_pred CCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCC
Q psy6770 197 PLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNR 232 (362)
Q Consensus 197 ~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~ 232 (362)
-.|||+|||..+.++..++-.- ..+|+|.|+||-
T Consensus 207 ~GPPGTGKT~TlvEiI~qlvk~--~k~VLVcaPSn~ 240 (649)
T KOG1803|consen 207 HGPPGTGKTRTLVEIISQLVKQ--KKRVLVCAPSNV 240 (649)
T ss_pred eCCCCCCceeeHHHHHHHHHHc--CCeEEEEcCchH
Confidence 3489999999888888765443 378999999985
No 473
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=37.13 E-value=88 Score=27.72 Aligned_cols=55 Identities=25% Similarity=0.242 Sum_probs=34.3
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.+++.++. ...+..+|.+|+.++.+
T Consensus 124 ~la~al~~~p~lllLDEPt----------~gLD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 178 (230)
T TIGR01184 124 AIARALSIRPKVLLLDEPF----------GALDALTRGNLQEELMQIW---EEHRVTVLMVTHDVDEA 178 (230)
T ss_pred HHHHHHHcCCCEEEEcCCC----------cCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 3455566789999999943 3445555666766665543 12234577777776543
No 474
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=37.04 E-value=1.2e+02 Score=26.90 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=34.9
Q ss_pred HHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 39 FRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 39 F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
+-.|-...|.++++||-- .+.|......+.+++.++.. ..+.-+|.+|+.++.+
T Consensus 164 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~~---~~~~tiiivsH~~~~~ 217 (236)
T cd03267 164 IAAALLHEPEILFLDEPT----------IGLDVVAQENIRNFLKEYNR---ERGTTVLLTSHYMKDI 217 (236)
T ss_pred HHHHHhcCCCEEEEcCCC----------CCCCHHHHHHHHHHHHHHHh---cCCCEEEEEecCHHHH
Confidence 455556689999999944 34566666777777766531 2234577777776644
No 475
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=36.92 E-value=1.3e+02 Score=25.36 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=33.8
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||--+ +-|......+.+++.++. . +..+|.+|+.++.+
T Consensus 108 ~laral~~~p~~lllDEP~~----------~LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 160 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTV----------GLDPITERQLLSLIFEVL---K--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHhcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 45666677899999999543 344555666767776553 2 24566677776655
No 476
>PF13175 AAA_15: AAA ATPase domain
Probab=36.74 E-value=1.1e+02 Score=29.52 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=30.2
Q ss_pred EEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCC
Q psy6770 49 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 104 (362)
Q Consensus 49 II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ 104 (362)
|++|||-|.-+ ++...+.+...|..+. ...++-||.||+.|.-
T Consensus 372 illidEPE~~L----------Hp~~q~~~~~~L~~~~---~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 372 ILLIDEPELHL----------HPQAQRKFIDFLKKLS---KNNNIQIIITTHSPFI 414 (415)
T ss_pred EEEEeCccccC----------CHHHHHHHHHHHHHHh---ccCCCEEEEECCChhh
Confidence 99999988643 4445566666665544 3557789999998853
No 477
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=36.60 E-value=1.1e+02 Score=25.54 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCeEEEecccccccc
Q psy6770 35 VRDVFRLAKENSPAIIFIDEIDAIAT 60 (362)
Q Consensus 35 l~~~F~~a~~~~P~II~iDeiD~l~~ 60 (362)
+..+...+....|.+|+||++-.+..
T Consensus 84 ~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 84 IQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 34555666777899999999988764
No 478
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=36.45 E-value=42 Score=32.30 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=36.8
Q ss_pred CeEEEEecCCCC-------CCCccccCCCCcceeEEecCC-CHHHHHHHHHHHhcc
Q psy6770 223 NLQVIMATNRAD-------TLDPALLRPGRLDRKIEFPLP-DRRQKRLVFSTITAK 270 (362)
Q Consensus 223 ~v~vi~aTn~~~-------~lD~a~~RpgRfd~~i~~~~P-~~~~r~~i~~~~l~~ 270 (362)
+.+||++||-.+ ....|+++ |+. .+++++| +..+-.+|.++.+..
T Consensus 277 d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 277 DGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred ceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 468899999873 66899999 999 8999998 557777888888864
No 479
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=36.11 E-value=1.1e+02 Score=27.21 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=33.7
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.+++.++.. ..+..+|.+|+.++.+
T Consensus 155 ~la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~~---~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 155 AIARALAQQPDLILADEPI----------ASLDPKTSKQVMDYLKRINK---EDGITVIINLHQVDLA 209 (243)
T ss_pred HHHHHHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHH
Confidence 3455556689999999944 23455556667777765531 1234566677766544
No 480
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=36.05 E-value=85 Score=28.16 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=35.8
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.++|..+. ...+.-+|.+|++++.+
T Consensus 163 ~la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~L~~~~---~~~~~tii~~sH~~~~~ 217 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPA----------AGLNPKETKELDELIAELR---NEHNVTVLLIEHDMKLV 217 (255)
T ss_pred HHHHHHhcCCCEEEEcCCc----------cCCCHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHHHH
Confidence 3455666789999999944 3445555666777776553 22245678888877655
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=35.79 E-value=2.1e+02 Score=32.33 Aligned_cols=72 Identities=26% Similarity=0.375 Sum_probs=43.6
Q ss_pred cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCC
Q psy6770 45 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 124 (362)
Q Consensus 45 ~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P 124 (362)
.++.+|++|++|.. ..+..+....+.+ ..+.-||.||+....+ +....+..++++.|
T Consensus 295 ~krvLLVLDdv~~~----------------~~l~~L~~~~~~~--~~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l 351 (1153)
T PLN03210 295 HRKVLIFIDDLDDQ----------------DVLDALAGQTQWF--GSGSRIIVITKDKHFL-----RAHGIDHIYEVCLP 351 (1153)
T ss_pred CCeEEEEEeCCCCH----------------HHHHHHHhhCccC--CCCcEEEEEeCcHHHH-----HhcCCCeEEEecCC
Confidence 45789999998732 2233332222211 2234466677754332 22245678999999
Q ss_pred CHHHHHHHHHHHHcc
Q psy6770 125 DRRQKRLVFSTITAK 139 (362)
Q Consensus 125 ~~~~r~~il~~~~~~ 139 (362)
+.++..+++..+.-+
T Consensus 352 ~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 352 SNELALEMFCRSAFK 366 (1153)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999988776543
No 482
>KOG0871|consensus
Probab=35.58 E-value=91 Score=25.78 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCch-----HHHHHHHHhchHHHhhhcccccccccccccc
Q psy6770 296 AICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMH-----AVRENRYIVLPKDFEKGYKNNTKKDESEHEF 360 (362)
Q Consensus 296 ~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (362)
-+-.+|-..|-.+....|.++|+.+||+...... ....+.++.-.++-+++.+...+-..++.|+
T Consensus 50 liSsEAneic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~~~K~~~~~~~~kssk~e~~Gi~eEEL 119 (156)
T KOG0871|consen 50 LISSEANEICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLENCKEEAKKRRRKSSKFEKSGIPEEEL 119 (156)
T ss_pred HHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhcCCCHHHH
Confidence 3445566666677788999999999999877642 2233444444444333333333333444443
No 483
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=35.20 E-value=60 Score=29.46 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCeEEEeccccccccc
Q psy6770 36 RDVFRLAKENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 36 ~~~F~~a~~~~P~II~iDeiD~l~~~ 61 (362)
..+-..++...|.+|+||.+..+...
T Consensus 130 ~~i~~~~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 130 EKVRYMAVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHhcCCceEEEECCHHHHhcc
Confidence 33344455678999999999988644
No 484
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=35.19 E-value=47 Score=36.55 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEeccccccccc
Q psy6770 32 PRMVRDVFRLAKENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 32 e~~l~~~F~~a~~~~P~II~iDeiD~l~~~ 61 (362)
...++.+|. ..||+|+|||+=..+.+
T Consensus 89 ~~~L~eLl~----~~P~LILiDEl~~Y~~~ 114 (1035)
T PF04465_consen 89 KDVLRELLG----GRPVLILIDELVAYARQ 114 (1035)
T ss_pred HHHHHHHhC----CCCEEEEeecHHHHHHH
Confidence 456777775 35999999999887763
No 485
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=34.77 E-value=19 Score=27.35 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCchHHHHHHHHhchHHHhhhc
Q psy6770 292 ADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVRENRYIVLPKDFEKGY 347 (362)
Q Consensus 292 adi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (362)
..|..+|.+|...|...|+..++.+||.-++.+=+. ......+|..|.+...+..
T Consensus 34 ~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~-Kl~Rl~~~L~~k~~~~kar 88 (93)
T PF02269_consen 34 EYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPK-KLARLRELLSMKDEIKKAR 88 (93)
T ss_dssp HHHHHHHHHHHC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHH
Confidence 368889999999999989899999999999886332 2356677777776665433
No 486
>COG1106 Predicted ATPases [General function prediction only]
Probab=34.68 E-value=32 Score=33.26 Aligned_cols=70 Identities=26% Similarity=0.324 Sum_probs=41.1
Q ss_pred CchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCcc
Q psy6770 29 GEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 108 (362)
Q Consensus 29 gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~a 108 (362)
|++-++.-.+....-..+-.+++|||+|...-.. .+..++..+. +. ..++++.+++||....-+|..
T Consensus 253 ~~G~kk~~~i~~~l~~~~~k~l~iDEie~~lHp~---------lm~~~l~~~~---~~-~~~~niq~~~TTH~~e~id~~ 319 (371)
T COG1106 253 GEGFKKALIIVPLLSDLNDKVLLIDEIENGLHPS---------LMILILETLE---DK-VKNNNIQVFLTTHSTEFIDLL 319 (371)
T ss_pred cchHHHHHHHHhhhhhcCCceEEeehhhhccCHH---------HHHHHHHHHH---hh-cccceEEEEeecccHHHHHHH
Confidence 3443443333333333344899999999764221 1122222222 22 234579999999999999988
Q ss_pred ccC
Q psy6770 109 LLR 111 (362)
Q Consensus 109 l~r 111 (362)
+.+
T Consensus 320 l~~ 322 (371)
T COG1106 320 LER 322 (371)
T ss_pred HHh
Confidence 876
No 487
>KOG2543|consensus
Probab=34.33 E-value=4e+02 Score=26.13 Aligned_cols=124 Identities=17% Similarity=0.211 Sum_probs=64.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhh---------------hhcCchH----HHHH---HHHHH--HHHc--CCeEEEecc
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQ---------------KYLGEGP----RMVR---DVFRL--AKEN--SPAIIFIDE 54 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~---------------~~~gese----~~l~---~~F~~--a~~~--~P~II~iDe 54 (362)
|.+++.+-++++.+.+.+++-+.+. .+.|... .++. .+|.+ +..+ +-..|++|.
T Consensus 44 T~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDn 123 (438)
T KOG2543|consen 44 TYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDN 123 (438)
T ss_pred hHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcC
Confidence 4678888888888888888854431 1122111 1222 23333 2222 246789999
Q ss_pred ccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcce-eEEEccCCCHHHHHHHH
Q psy6770 55 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLD-RKIEFPLPDRRQKRLVF 133 (362)
Q Consensus 55 iD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~-~~i~i~~P~~~~r~~il 133 (362)
+|.+-. .+. ..+..++..-.-++...-++++..+..+.. -..+-|-++ ..++||-++.++-+.|+
T Consensus 124 ad~lrD--------~~a---~ll~~l~~L~el~~~~~i~iils~~~~e~~---y~~n~g~~~i~~l~fP~Ys~~e~~~Il 189 (438)
T KOG2543|consen 124 ADALRD--------MDA---ILLQCLFRLYELLNEPTIVIILSAPSCEKQ---YLINTGTLEIVVLHFPQYSVEETQVIL 189 (438)
T ss_pred HHhhhc--------cch---HHHHHHHHHHHHhCCCceEEEEeccccHHH---hhcccCCCCceEEecCCCCHHHHHHHH
Confidence 999841 222 333333322221222222222223332221 122223443 67899999999999998
Q ss_pred HHHHc
Q psy6770 134 STITA 138 (362)
Q Consensus 134 ~~~~~ 138 (362)
..-..
T Consensus 190 ~~~~p 194 (438)
T KOG2543|consen 190 SRDNP 194 (438)
T ss_pred hcCCc
Confidence 65443
No 488
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=34.25 E-value=1.7e+02 Score=26.72 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccC
Q psy6770 37 DVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLR 111 (362)
Q Consensus 37 ~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r 111 (362)
-+|.+|--..|-++++||-= .+.|...+..+...+.++-. ..+.--++..|.+++++++-+..
T Consensus 180 vLiaRALv~~P~LLiLDEP~----------~GLDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 180 VLIARALVKDPELLILDEPA----------QGLDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHhcCCCEEEecCcc----------ccCChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccce
Confidence 46788888899999999922 23343333334344433332 22344466678889999885554
No 489
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=34.24 E-value=1.3e+02 Score=26.56 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=34.3
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||--+ +-|......+.+++..+. . +.-+|.+|++++.+
T Consensus 148 ~laral~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~ 200 (237)
T cd03252 148 AIARALIHNPRILIFDEATS----------ALDYESEHAIMRNMHDIC---A--GRTVIIIAHRLSTV 200 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHhc---C--CCEEEEEeCCHHHH
Confidence 35556667899999999543 345555666667766553 2 34577777777654
No 490
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=34.18 E-value=79 Score=29.96 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHcCCeEEEeccccccccccCCC---CCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcC
Q psy6770 31 GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDA---QTGADREVQRILLELLNQMDGFDQTTNVKVIMATN 100 (362)
Q Consensus 31 se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~---~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn 100 (362)
.++.+..+...++...+.+|+||-+-++.+...-. +........+.++++|..+...-...++.+|.|..
T Consensus 118 ~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 118 GEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred HHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 34555555566667789999999999998742111 11111112345556665555544455677777644
No 491
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.15 E-value=1.4e+02 Score=24.98 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=34.1
Q ss_pred HHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 39 FRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 39 F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
+-.|-...|.++++||-- .+.|......+.+++.++. . ...+|.+|+.++.+.
T Consensus 107 la~al~~~p~llllDEP~----------~gLD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 159 (171)
T cd03228 107 IARALLRDPPILILDEAT----------SALDPETEALILEALRALA---K--GKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHhcCCCEEEEECCC----------cCCCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHHH
Confidence 455566789999999943 2345555566666666553 2 255777788776654
No 492
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.12 E-value=1.6e+02 Score=25.98 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=33.8
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+. . +..+|.+|+.++.+
T Consensus 148 ~la~al~~~p~lllLDEP~----------~~LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 200 (234)
T cd03251 148 AIARALLKDPPILILDEAT----------SALDTESERLVQAALERLM---K--NRTTFVIAHRLSTI 200 (234)
T ss_pred HHHHHHhcCCCEEEEeCcc----------ccCCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 3455556789999999954 2345555666777776653 1 24566677776655
No 493
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=33.89 E-value=1.5e+02 Score=23.96 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=33.3
Q ss_pred HHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccc
Q psy6770 4 CTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 4 akaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~ 61 (362)
++..|...|+.++.+-...-.+... ..-..++++.+.++.....+|++-++|.|+.+
T Consensus 27 l~~~a~~~g~~i~~~~~D~~~SG~~-~~Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~ 83 (140)
T cd03770 27 LEEYAKENGLENIRHYIDDGFSGTT-FDRPGFNRMIEDIEAGKIDIVIVKDMSRLGRN 83 (140)
T ss_pred HHHHHHHCCCEEEEEEEcCCCcCCc-CCCHHHHHHHHHHHcCCCCEEEEeccchhccC
Confidence 3456777787765432111111111 11345777777787777788888889988643
No 494
>KOG0990|consensus
Probab=33.86 E-value=3.1e+02 Score=26.18 Aligned_cols=86 Identities=20% Similarity=0.289 Sum_probs=54.3
Q ss_pred HHHHHHHHc-------CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccc
Q psy6770 37 DVFRLAKEN-------SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPAL 109 (362)
Q Consensus 37 ~~F~~a~~~-------~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al 109 (362)
..|..++.. .+-.|++||.|+..... ...+.... .. .+.++-+....|+|..+-|++
T Consensus 115 ~~fast~~~~~fst~~~fKlvILDEADaMT~~A-----------QnALRRvi---ek--~t~n~rF~ii~n~~~ki~pa~ 178 (360)
T KOG0990|consen 115 HLFASTQQPTTYSTHAAFKLVILDEADAMTRDA-----------QNALRRVI---EK--YTANTRFATISNPPQKIHPAQ 178 (360)
T ss_pred HHHHhhccceeccccCceeEEEecchhHhhHHH-----------HHHHHHHH---HH--hccceEEEEeccChhhcCchh
Confidence 355555532 57899999999875332 12222222 21 123444556789999999999
Q ss_pred cCCCcceeEEEccCCCHHHHHHHHHHHHccCC
Q psy6770 110 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 141 (362)
Q Consensus 110 ~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~ 141 (362)
.. ||. .+.+..-+.+.....+.++++...
T Consensus 179 qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 179 QS--RCT-RFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred hc--ccc-cCCCCCCChhhhhhHHHHHHhcch
Confidence 98 884 456666666677777777766543
No 495
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=33.69 E-value=86 Score=26.06 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=26.3
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
.|.++++||...=. +......+...+.++. .. +..+|.+|.+++...
T Consensus 99 ~~~llllDEp~~gl----------d~~~~~~l~~~l~~~~--~~--~~~vii~TH~~~~~~ 145 (162)
T cd03227 99 PRPLYILDEIDRGL----------DPRDGQALAEAILEHL--VK--GAQVIVITHLPELAE 145 (162)
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH--hc--CCEEEEEcCCHHHHH
Confidence 78999999977432 2222333333333321 11 345777888776544
No 496
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.65 E-value=1.2e+02 Score=26.26 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 103 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~ 103 (362)
.+-.|-...|.++++||-- .+.|......+.+++.++.. .....++|.+++..+
T Consensus 128 ~laral~~~p~llllDEPt----------~~LD~~~~~~~~~~l~~~~~--~~~~t~ii~~~h~~~ 181 (202)
T cd03233 128 SIAEALVSRASVLCWDNST----------RGLDSSTALEILKCIRTMAD--VLKTTTFVSLYQASD 181 (202)
T ss_pred HHHHHHhhCCCEEEEcCCC----------ccCCHHHHHHHHHHHHHHHH--hCCCEEEEEEcCCHH
Confidence 3556666789999999933 23455556666666666532 223345555665543
No 497
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=33.53 E-value=1.5e+02 Score=26.00 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=35.8
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
.+-.|-...|.++++||-- ++.|......+.++|.++.. .+..+|.+|++++.+.
T Consensus 134 ~laral~~~p~llllDEP~----------~~LD~~~~~~l~~~L~~~~~----~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPT----------NGLDPIGIQELRELIRSFPE----QGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHHhcCCCEEEECCCc----------cCCCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHHH
Confidence 4555666789999999944 34455566777777766532 2345777777776543
No 498
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.42 E-value=1e+02 Score=28.28 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 37 DVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 37 ~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
-.+-.|-...|.++++||-- .+.|......+.+++.++.. ..+.-+|.+|+.++.+.
T Consensus 146 l~laraL~~~p~llilDEPt----------~gLD~~~~~~l~~~l~~l~~---~~g~tvli~tH~~~~~~ 202 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPT----------AGLDPQGVKELIDFLNDLPE---TYGMTVIFSTHQLDLVP 202 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHH
Confidence 34566667789999999943 34455556667777765532 22345777777776553
No 499
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=1.2e+02 Score=29.89 Aligned_cols=108 Identities=14% Similarity=0.341 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC-Cccc
Q psy6770 31 GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL-DPAL 109 (362)
Q Consensus 31 se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l-d~al 109 (362)
.|.++..+.+.+...+|.+++||-|-++....-++..++-...+....+| ..+-. ..+-.+++++=...-..| -|-+
T Consensus 153 aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L-~~~AK-~~~i~~fiVGHVTKeG~IAGPrv 230 (456)
T COG1066 153 AETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAEL-MRLAK-TKNIAIFIVGHVTKEGAIAGPRV 230 (456)
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHH-HHHHH-HcCCeEEEEEEEcccccccCchh
Confidence 46678999999999999999999999998765333333322223333333 33321 122234445533333322 3433
Q ss_pred cCCCcceeEEEccCCCHHHHHHHHHHHHccCCC
Q psy6770 110 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL 142 (362)
Q Consensus 110 ~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~ 142 (362)
+- +=.|.+++|.- +.....+|++..-+....
T Consensus 231 LE-HmVDtVlyFEG-d~~~~~RiLR~vKNRFG~ 261 (456)
T COG1066 231 LE-HMVDTVLYFEG-DRHSRYRILRSVKNRFGA 261 (456)
T ss_pred ee-eeeeEEEEEec-cCCCceeeeehhcccCCc
Confidence 33 23566777742 223445566554444433
No 500
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=33.28 E-value=1.1e+02 Score=23.19 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
..++|+.-+..+++=|.-.|=.++.+.|+.+|+.+|+.
T Consensus 57 ~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 57 KLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred HcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 46899999999999999999888999999999999975
Done!