Query psy6770
Match_columns 362
No_of_seqs 286 out of 2417
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 17:58:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 8.9E-67 3E-71 538.0 18.2 344 1-347 252-766 (806)
2 1ypw_A Transitional endoplasmi 100.0 7.7E-44 2.6E-48 372.4 15.8 344 1-347 252-766 (806)
3 4b4t_J 26S protease regulatory 100.0 6.7E-43 2.3E-47 333.7 20.6 197 1-328 196-392 (405)
4 4b4t_I 26S protease regulatory 100.0 1.4E-41 4.8E-46 325.5 21.1 198 1-329 230-427 (437)
5 4b4t_H 26S protease regulatory 100.0 3E-41 1E-45 326.1 20.6 209 1-340 257-467 (467)
6 4b4t_L 26S protease subunit RP 100.0 4.6E-41 1.6E-45 325.9 21.2 199 1-330 229-427 (437)
7 4b4t_M 26S protease regulatory 100.0 2.4E-41 8.1E-46 327.6 17.6 198 1-329 229-426 (434)
8 4b4t_K 26S protease regulatory 100.0 2.3E-40 7.8E-45 320.5 20.8 196 1-327 220-416 (428)
9 3cf2_A TER ATPase, transitiona 100.0 7.6E-36 2.6E-40 307.9 8.4 178 1-178 525-702 (806)
10 3cf0_A Transitional endoplasmi 100.0 6E-30 2.1E-34 238.9 17.5 212 1-343 63-300 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-28 5.4E-33 231.4 17.6 210 1-345 59-320 (322)
12 3eie_A Vacuolar protein sortin 100.0 1.5E-28 5.1E-33 231.6 16.3 210 1-346 65-320 (322)
13 2ce7_A Cell division protein F 100.0 1E-28 3.4E-33 242.7 14.0 240 1-243 63-302 (476)
14 2qp9_X Vacuolar protein sortin 100.0 8.9E-28 3E-32 229.2 16.5 209 1-345 98-352 (355)
15 2x8a_A Nuclear valosin-contain 99.9 1.7E-26 5.9E-31 212.5 15.0 174 1-177 58-236 (274)
16 2zan_A Vacuolar protein sortin 99.9 5.9E-27 2E-31 229.9 12.0 210 1-345 181-442 (444)
17 2dhr_A FTSH; AAA+ protein, hex 99.9 2.3E-26 7.7E-31 227.2 13.6 177 1-177 78-254 (499)
18 1lv7_A FTSH; alpha/beta domain 99.9 9.4E-25 3.2E-29 198.9 19.5 177 1-177 59-235 (257)
19 3h4m_A Proteasome-activating n 99.9 4.6E-24 1.6E-28 197.0 17.8 177 1-177 65-241 (285)
20 3d8b_A Fidgetin-like protein 1 99.9 4.2E-24 1.4E-28 204.0 16.2 212 1-346 131-356 (357)
21 3hu3_A Transitional endoplasmi 99.9 1E-23 3.5E-28 208.5 18.0 175 1-178 252-426 (489)
22 1ypw_A Transitional endoplasmi 99.9 3.6E-26 1.2E-30 239.0 -0.8 178 1-178 525-702 (806)
23 1ixz_A ATP-dependent metallopr 99.9 3.9E-23 1.3E-27 187.8 17.9 177 1-177 63-239 (254)
24 2qz4_A Paraplegin; AAA+, SPG7, 99.9 8.4E-24 2.9E-28 192.5 13.4 177 1-177 53-232 (262)
25 3b9p_A CG5977-PA, isoform A; A 99.9 1.2E-23 4.2E-28 195.4 13.6 209 1-345 68-293 (297)
26 2c9o_A RUVB-like 1; hexameric 99.9 1.5E-25 5E-30 220.8 -3.8 308 1-326 77-438 (456)
27 3vfd_A Spastin; ATPase, microt 99.9 8.3E-23 2.8E-27 197.2 14.9 209 1-345 162-386 (389)
28 1iy2_A ATP-dependent metallopr 99.9 5E-22 1.7E-26 183.0 18.2 177 1-177 87-263 (278)
29 2r62_A Cell division protease 99.9 1E-23 3.5E-28 193.0 1.5 177 1-177 58-236 (268)
30 2x8a_A Nuclear valosin-contain 99.9 3E-22 1E-26 184.1 11.0 126 206-331 129-270 (274)
31 3t15_A Ribulose bisphosphate c 99.8 7.9E-22 2.7E-26 183.2 8.3 158 1-165 50-222 (293)
32 2ce7_A Cell division protein F 99.8 7.2E-20 2.5E-24 179.8 12.3 124 205-328 136-259 (476)
33 2dhr_A FTSH; AAA+ protein, hex 99.8 2.7E-19 9.1E-24 176.7 10.4 124 205-328 151-274 (499)
34 4b4t_K 26S protease regulatory 99.8 3.8E-19 1.3E-23 172.0 10.6 103 76-178 295-398 (428)
35 1lv7_A FTSH; alpha/beta domain 99.8 4.9E-18 1.7E-22 154.3 15.7 123 205-327 132-254 (257)
36 1ixz_A ATP-dependent metallopr 99.8 6.7E-18 2.3E-22 153.1 13.7 118 205-322 136-253 (254)
37 4b4t_I 26S protease regulatory 99.8 2.1E-18 7.3E-23 165.2 10.3 100 79-178 308-407 (437)
38 4b4t_J 26S protease regulatory 99.7 4.1E-18 1.4E-22 162.7 11.9 100 79-178 274-373 (405)
39 4b4t_L 26S protease subunit RP 99.7 6.2E-18 2.1E-22 163.8 11.0 100 79-178 307-406 (437)
40 4b4t_H 26S protease regulatory 99.7 5.6E-18 1.9E-22 163.8 9.6 99 80-178 336-434 (467)
41 4b4t_M 26S protease regulatory 99.7 1.9E-17 6.4E-22 160.3 11.1 100 79-178 307-406 (434)
42 1iy2_A ATP-dependent metallopr 99.7 5.1E-17 1.7E-21 149.4 13.0 118 205-322 160-277 (278)
43 3h4m_A Proteasome-activating n 99.7 4.3E-17 1.5E-21 150.1 11.9 140 205-344 138-280 (285)
44 3kw6_A 26S protease regulatory 99.7 7.1E-17 2.4E-21 119.4 9.1 76 253-328 1-76 (78)
45 2krk_A 26S protease regulatory 99.7 5.8E-17 2E-21 121.9 8.4 78 251-328 7-84 (86)
46 3hu3_A Transitional endoplasmi 99.7 1.5E-16 5E-21 157.3 13.4 129 202-330 319-464 (489)
47 3vlf_B 26S protease regulatory 99.7 1E-16 3.4E-21 121.3 8.9 84 256-339 2-87 (88)
48 1g41_A Heat shock protein HSLU 99.7 1.9E-16 6.3E-21 153.6 12.0 242 1-264 64-345 (444)
49 2qz4_A Paraplegin; AAA+, SPG7, 99.7 6E-17 2.1E-21 147.0 7.7 124 206-329 128-253 (262)
50 3aji_B S6C, proteasome (prosom 99.7 1.6E-16 5.4E-21 119.0 8.2 81 256-336 2-82 (83)
51 2r62_A Cell division protease 99.6 4.4E-17 1.5E-21 148.8 4.0 124 206-329 133-257 (268)
52 1r6b_X CLPA protein; AAA+, N-t 99.6 2.6E-16 8.7E-21 164.2 10.2 160 1-172 221-407 (758)
53 3pxi_A Negative regulator of g 99.6 1.4E-14 4.8E-19 151.0 15.6 112 1-140 215-341 (758)
54 2dzn_B 26S protease regulatory 99.5 4.2E-15 1.4E-19 110.8 4.1 70 258-327 1-70 (82)
55 3cf0_A Transitional endoplasmi 99.5 6.6E-14 2.3E-18 130.1 12.0 103 75-177 137-239 (301)
56 1qvr_A CLPB protein; coiled co 99.5 6.4E-14 2.2E-18 147.8 8.5 126 1-139 205-347 (854)
57 3syl_A Protein CBBX; photosynt 99.4 3.2E-13 1.1E-17 125.5 8.3 162 1-174 81-262 (309)
58 1d2n_A N-ethylmaleimide-sensit 99.3 2.4E-12 8.1E-17 117.6 8.8 160 1-170 78-245 (272)
59 3m6a_A ATP-dependent protease 99.3 2.5E-12 8.6E-17 128.9 6.1 181 1-196 122-340 (543)
60 2qp9_X Vacuolar protein sortin 99.2 7.1E-12 2.4E-16 119.1 7.4 86 90-177 185-271 (355)
61 3hws_A ATP-dependent CLP prote 99.2 2.6E-11 8.8E-16 115.5 10.5 173 1-175 65-323 (363)
62 3eie_A Vacuolar protein sortin 99.2 2.3E-11 7.8E-16 114.0 6.2 87 89-177 151-238 (322)
63 3t15_A Ribulose bisphosphate c 99.2 1.3E-11 4.6E-16 114.1 4.6 168 119-296 40-222 (293)
64 1ofh_A ATP-dependent HSL prote 99.1 1.2E-10 4E-15 107.7 9.6 168 1-172 64-271 (310)
65 3uk6_A RUVB-like 2; hexameric 99.1 4.1E-10 1.4E-14 106.9 10.3 158 1-177 84-313 (368)
66 1jbk_A CLPB protein; beta barr 99.0 2.4E-10 8.3E-15 97.3 6.3 120 1-133 57-194 (195)
67 3pfi_A Holliday junction ATP-d 99.0 2.5E-09 8.5E-14 100.4 13.0 152 1-174 69-234 (338)
68 1hqc_A RUVB; extended AAA-ATPa 99.0 3.7E-09 1.3E-13 98.4 11.7 151 1-174 52-218 (324)
69 3kw6_A 26S protease regulatory 98.9 1.4E-09 4.7E-14 79.9 6.3 57 122-178 1-57 (78)
70 1l8q_A Chromosomal replication 98.9 2E-09 7E-14 100.5 8.7 155 1-173 51-214 (324)
71 2z4s_A Chromosomal replication 98.9 1.6E-09 5.6E-14 105.7 7.5 160 1-175 144-314 (440)
72 2krk_A 26S protease regulatory 98.9 2.1E-09 7.2E-14 80.3 5.5 58 121-178 8-65 (86)
73 3pxg_A Negative regulator of g 98.9 8.9E-10 3E-14 108.4 4.3 145 1-173 215-384 (468)
74 3b9p_A CG5977-PA, isoform A; A 98.8 2.7E-09 9.2E-14 98.3 5.2 86 90-177 157-243 (297)
75 2p65_A Hypothetical protein PF 98.8 5.9E-09 2E-13 88.4 6.8 113 1-125 57-187 (187)
76 2v1u_A Cell division control p 98.8 2.3E-08 7.9E-13 94.9 11.5 163 1-175 58-257 (387)
77 1um8_A ATP-dependent CLP prote 98.8 1.6E-08 5.3E-13 96.6 9.7 172 1-174 86-339 (376)
78 3pxi_A Negative regulator of g 98.7 4.4E-08 1.5E-12 102.0 11.2 156 1-173 535-723 (758)
79 2chg_A Replication factor C sm 98.7 1.1E-07 3.7E-12 82.6 11.9 147 1-173 52-210 (226)
80 3vlf_B 26S protease regulatory 98.7 1.4E-08 4.6E-13 76.3 5.0 70 125-197 2-71 (88)
81 1r6b_X CLPA protein; AAA+, N-t 98.7 2.5E-08 8.5E-13 103.8 8.5 154 1-172 502-713 (758)
82 3d8b_A Fidgetin-like protein 1 98.7 1.9E-08 6.3E-13 95.5 6.7 85 91-177 220-305 (357)
83 4fcw_A Chaperone protein CLPB; 98.7 1.5E-08 5.2E-13 93.7 5.7 161 1-174 61-278 (311)
84 2c9o_A RUVB-like 1; hexameric 98.7 2E-10 6.7E-15 112.8 -7.6 68 224-300 191-262 (456)
85 1njg_A DNA polymerase III subu 98.6 1.2E-07 4E-12 83.4 10.4 122 32-173 108-234 (250)
86 3te6_A Regulatory protein SIR3 98.6 6.7E-08 2.3E-12 89.8 9.2 123 1-140 59-214 (318)
87 1sxj_A Activator 1 95 kDa subu 98.6 1.9E-08 6.5E-13 100.1 5.7 149 1-170 91-252 (516)
88 3u61_B DNA polymerase accessor 98.6 1.3E-07 4.3E-12 88.1 10.5 112 1-137 62-178 (324)
89 3pvs_A Replication-associated 98.6 8E-08 2.7E-12 93.8 9.2 146 1-175 64-223 (447)
90 3aji_B S6C, proteasome (prosom 98.6 7.3E-08 2.5E-12 71.4 6.7 54 125-178 2-55 (83)
91 3bos_A Putative DNA replicatio 98.6 4E-08 1.4E-12 86.8 6.0 150 1-175 66-225 (242)
92 2qby_B CDC6 homolog 3, cell di 98.6 1.9E-07 6.4E-12 88.8 9.8 155 1-175 59-253 (384)
93 3vfd_A Spastin; ATPase, microt 98.5 6.9E-08 2.4E-12 92.6 6.2 86 90-177 250-336 (389)
94 2qby_A CDC6 homolog 1, cell di 98.4 5.1E-07 1.7E-11 85.4 9.1 160 1-175 59-253 (386)
95 1in4_A RUVB, holliday junction 98.4 4.5E-06 1.5E-10 78.2 13.9 152 1-174 65-230 (334)
96 1g41_A Heat shock protein HSLU 98.4 4.9E-08 1.7E-12 94.6 0.0 61 202-264 126-188 (444)
97 2chq_A Replication factor C sm 98.3 1.1E-06 3.8E-11 81.0 9.0 149 1-171 52-208 (319)
98 1jr3_A DNA polymerase III subu 98.3 1.6E-06 5.4E-11 82.0 9.7 121 34-174 103-228 (373)
99 2dzn_B 26S protease regulatory 98.3 1.4E-07 4.9E-12 69.7 1.8 66 127-195 1-66 (82)
100 1fnn_A CDC6P, cell division co 98.3 2.4E-06 8.2E-11 81.0 10.7 159 1-175 58-255 (389)
101 2r44_A Uncharacterized protein 98.3 1.9E-06 6.4E-11 80.4 9.7 122 1-140 60-201 (331)
102 1qvr_A CLPB protein; coiled co 98.3 7.2E-07 2.5E-11 94.0 6.9 155 1-173 602-818 (854)
103 1sxj_D Activator 1 41 kDa subu 98.3 2.5E-06 8.5E-11 80.0 9.7 147 1-173 72-241 (353)
104 1g8p_A Magnesium-chelatase 38 98.3 8.1E-06 2.8E-10 76.4 13.2 77 46-135 144-230 (350)
105 1sxj_B Activator 1 37 kDa subu 98.2 2.5E-06 8.6E-11 78.7 8.9 144 1-170 56-212 (323)
106 1iqp_A RFCS; clamp loader, ext 98.2 7.4E-06 2.5E-10 75.7 10.4 148 1-170 60-215 (327)
107 3nbx_X ATPase RAVA; AAA+ ATPas 98.1 3.6E-06 1.2E-10 83.0 7.9 120 1-137 55-196 (500)
108 3cmw_A Protein RECA, recombina 98.1 9.2E-07 3.1E-11 97.8 3.8 105 1-106 1096-1223(1706)
109 3m6a_A ATP-dependent protease 98.1 8.5E-07 2.9E-11 88.7 2.8 102 222-326 223-342 (543)
110 3uk6_A RUVB-like 2; hexameric 98.1 4E-06 1.4E-10 79.2 7.3 94 231-327 238-332 (368)
111 3pfi_A Holliday junction ATP-d 98.0 1.3E-05 4.4E-10 74.8 8.7 103 223-328 154-257 (338)
112 1sxj_E Activator 1 40 kDa subu 98.0 2E-05 6.9E-10 73.9 9.9 108 46-173 134-243 (354)
113 1a5t_A Delta prime, HOLB; zinc 98.0 3.6E-05 1.2E-09 71.9 11.2 87 32-137 90-180 (334)
114 1hqc_A RUVB; extended AAA-ATPa 97.9 2E-05 6.8E-10 72.9 7.4 102 222-326 137-239 (324)
115 2r44_A Uncharacterized protein 97.8 6.3E-05 2.2E-09 69.9 9.8 105 221-327 148-299 (331)
116 3f9v_A Minichromosome maintena 97.8 8.3E-06 2.9E-10 82.3 3.0 123 1-140 341-493 (595)
117 1g8p_A Magnesium-chelatase 38 97.7 4.6E-05 1.6E-09 71.2 7.3 104 222-328 186-325 (350)
118 2bjv_A PSP operon transcriptio 97.7 0.00013 4.5E-09 65.5 10.0 159 1-175 43-241 (265)
119 3bos_A Putative DNA replicatio 97.7 5.2E-05 1.8E-09 66.5 6.7 110 210-323 125-241 (242)
120 3syl_A Protein CBBX; photosynt 97.7 2.2E-05 7.6E-10 72.1 4.1 111 204-318 152-279 (309)
121 2z4s_A Chromosomal replication 97.7 4.4E-05 1.5E-09 74.2 6.0 114 209-327 214-334 (440)
122 1ojl_A Transcriptional regulat 97.6 4.1E-05 1.4E-09 70.7 5.3 157 1-174 39-235 (304)
123 2v1u_A Cell division control p 97.6 0.00016 5.3E-09 68.2 9.3 116 208-327 152-278 (387)
124 4akg_A Glutathione S-transfera 97.6 0.00015 5.1E-09 83.8 10.5 125 1-140 1281-1434(2695)
125 2gno_A DNA polymerase III, gam 97.6 0.00019 6.5E-09 66.2 9.1 110 2-137 33-152 (305)
126 1w5s_A Origin recognition comp 97.6 0.00024 8.3E-09 67.6 10.0 163 1-174 66-273 (412)
127 1in4_A RUVB, holliday junction 97.5 0.00029 1E-08 65.7 9.7 102 223-327 150-252 (334)
128 3f9v_A Minichromosome maintena 97.5 0.00018 6.2E-09 72.5 8.7 104 222-328 433-590 (595)
129 1xwi_A SKD1 protein; VPS4B, AA 97.5 8.4E-05 2.9E-09 69.1 5.8 84 92-177 149-233 (322)
130 1njg_A DNA polymerase III subu 97.5 0.00017 5.7E-09 62.8 7.1 105 208-322 143-248 (250)
131 3pvs_A Replication-associated 97.5 6.2E-05 2.1E-09 73.3 4.5 106 221-330 132-249 (447)
132 1sxj_C Activator 1 40 kDa subu 97.5 0.00052 1.8E-08 64.1 10.0 115 1-140 60-185 (340)
133 2chg_A Replication factor C sm 97.4 0.00025 8.6E-09 60.9 6.5 104 209-323 120-224 (226)
134 2qby_B CDC6 homolog 3, cell di 97.3 0.00036 1.2E-08 65.8 7.1 100 222-326 163-271 (384)
135 1ofh_A ATP-dependent HSL prote 97.3 0.00026 8.8E-09 64.7 5.5 118 206-325 143-299 (310)
136 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.00027 9.2E-09 69.6 5.7 92 225-319 151-280 (500)
137 3co5_A Putative two-component 97.2 0.00015 5E-09 59.0 3.2 76 1-102 41-116 (143)
138 3pxg_A Negative regulator of g 97.2 0.00026 9E-09 69.3 5.4 104 220-326 288-407 (468)
139 2zan_A Vacuolar protein sortin 97.1 0.00033 1.1E-08 68.0 4.6 84 92-177 271-355 (444)
140 3n70_A Transport activator; si 97.1 0.00035 1.2E-08 56.8 3.9 76 1-102 38-116 (145)
141 2qby_A CDC6 homolog 1, cell di 97.0 0.0014 4.9E-08 61.4 8.3 116 207-327 148-274 (386)
142 1d2n_A N-ethylmaleimide-sensit 96.9 0.00019 6.5E-09 64.7 0.6 114 206-328 149-267 (272)
143 1l8q_A Chromosomal replication 96.8 0.001 3.6E-08 61.4 5.3 110 210-324 119-239 (324)
144 1fnn_A CDC6P, cell division co 96.8 0.0023 8E-08 60.1 7.6 117 208-327 142-276 (389)
145 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.00068 2.3E-08 62.7 2.2 104 1-109 137-242 (331)
146 4fcw_A Chaperone protein CLPB; 96.5 0.00076 2.6E-08 61.7 2.1 84 222-307 159-280 (311)
147 1sxj_D Activator 1 41 kDa subu 96.5 0.0067 2.3E-07 56.2 8.2 110 209-324 151-262 (353)
148 2fna_A Conserved hypothetical 96.3 0.024 8.3E-07 52.2 10.9 118 35-169 124-252 (357)
149 2r2a_A Uncharacterized protein 96.3 0.0027 9.2E-08 54.7 3.7 71 45-127 86-156 (199)
150 2kjq_A DNAA-related protein; s 96.2 0.0044 1.5E-07 50.6 4.5 90 1-121 50-145 (149)
151 2chq_A Replication factor C sm 96.1 0.015 5E-07 53.0 8.3 104 209-323 120-224 (319)
152 3u61_B DNA polymerase accessor 96.1 0.003 1E-07 58.2 3.2 104 208-323 123-235 (324)
153 4akg_A Glutathione S-transfera 96.0 0.021 7.1E-07 66.4 10.5 112 2-134 660-790 (2695)
154 1jr3_A DNA polymerase III subu 95.9 0.015 5.3E-07 54.2 7.3 104 208-321 136-240 (373)
155 2qen_A Walker-type ATPase; unk 95.8 0.2 7E-06 45.7 14.5 115 41-168 123-247 (350)
156 3cmu_A Protein RECA, recombina 95.1 0.02 6.9E-07 64.6 5.8 98 1-98 1441-1560(2050)
157 3ec2_A DNA replication protein 94.9 0.022 7.6E-07 47.5 4.3 88 1-103 52-144 (180)
158 1jbk_A CLPB protein; beta barr 94.7 0.0034 1.2E-07 52.3 -1.2 42 220-264 148-194 (195)
159 1iqp_A RFCS; clamp loader, ext 94.6 0.052 1.8E-06 49.4 6.4 89 208-302 127-216 (327)
160 3k1j_A LON protease, ATP-depen 94.4 0.018 6.2E-07 58.0 3.1 114 222-337 251-387 (604)
161 1sxj_B Activator 1 37 kDa subu 94.3 0.071 2.4E-06 48.4 6.5 106 208-324 124-230 (323)
162 1svm_A Large T antigen; AAA+ f 94.1 0.017 5.8E-07 54.7 2.0 101 1-123 183-284 (377)
163 3k1j_A LON protease, ATP-depen 93.7 0.091 3.1E-06 52.8 6.6 117 46-175 201-356 (604)
164 1sxj_E Activator 1 40 kDa subu 93.5 0.083 2.8E-06 48.9 5.6 90 208-303 151-242 (354)
165 1w5s_A Origin recognition comp 93.5 0.13 4.5E-06 48.4 7.0 101 222-325 178-293 (412)
166 1ny5_A Transcriptional regulat 93.2 0.4 1.4E-05 45.3 9.8 154 2-174 175-370 (387)
167 1sxj_A Activator 1 95 kDa subu 93.0 0.25 8.7E-06 48.5 8.4 92 223-325 181-274 (516)
168 3vkg_A Dynein heavy chain, cyt 92.2 0.52 1.8E-05 55.7 10.6 112 2-134 619-750 (3245)
169 3dzd_A Transcriptional regulat 91.7 0.81 2.8E-05 42.8 9.7 156 2-174 167-361 (368)
170 3hws_A ATP-dependent CLP prote 91.0 0.33 1.1E-05 45.2 6.3 71 236-308 239-325 (363)
171 2w58_A DNAI, primosome compone 90.8 0.22 7.4E-06 42.0 4.3 57 1-59 68-128 (202)
172 1sxj_C Activator 1 40 kDa subu 90.3 0.14 4.7E-06 47.3 2.9 106 208-322 127-236 (340)
173 1jr3_D DNA polymerase III, del 89.0 1.1 3.6E-05 41.3 7.9 119 35-173 61-191 (343)
174 1a5t_A Delta prime, HOLB; zinc 88.9 0.33 1.1E-05 44.7 4.4 72 208-288 125-196 (334)
175 2p65_A Hypothetical protein PF 88.4 0.055 1.9E-06 44.6 -1.3 36 218-256 147-187 (187)
176 1um8_A ATP-dependent CLP prote 86.3 0.61 2.1E-05 43.5 4.5 84 236-321 256-361 (376)
177 3vkg_A Dynein heavy chain, cyt 86.2 1.3 4.3E-05 52.6 7.7 122 4-139 1322-1471(3245)
178 3f8t_A Predicted ATPase involv 85.8 1.8 6.1E-05 42.0 7.4 105 222-328 338-486 (506)
179 1ojl_A Transcriptional regulat 85.0 0.29 9.8E-06 44.6 1.4 92 222-319 136-246 (304)
180 2qgz_A Helicase loader, putati 84.6 0.72 2.5E-05 42.0 4.0 56 1-58 166-226 (308)
181 1svm_A Large T antigen; AAA+ f 80.5 0.23 7.8E-06 46.9 -1.1 31 223-254 254-284 (377)
182 3cmu_A Protein RECA, recombina 80.5 1.3 4.4E-05 50.4 4.6 105 1-105 746-872 (2050)
183 4ag6_A VIRB4 ATPase, type IV s 77.6 7.4 0.00025 36.2 8.5 98 13-125 223-336 (392)
184 3f8t_A Predicted ATPase involv 75.4 2.7 9.2E-05 40.7 4.7 68 48-128 302-385 (506)
185 1xp8_A RECA protein, recombina 75.0 5.8 0.0002 36.9 6.8 69 32-100 138-209 (366)
186 3te6_A Regulatory protein SIR3 74.9 2.2 7.5E-05 39.1 3.8 50 220-271 160-214 (318)
187 2gno_A DNA polymerase III, gam 73.9 2.1 7.2E-05 38.8 3.4 54 208-268 99-152 (305)
188 2iut_A DNA translocase FTSK; n 72.6 7.8 0.00027 38.4 7.3 74 48-134 345-420 (574)
189 1jr3_D DNA polymerase III, del 69.2 8.4 0.00029 35.0 6.5 109 208-325 94-209 (343)
190 2bjv_A PSP operon transcriptio 68.8 2.3 8E-05 37.2 2.4 91 222-318 140-250 (265)
191 2zr9_A Protein RECA, recombina 64.6 5.5 0.00019 36.8 4.1 29 32-60 125-153 (349)
192 3hr8_A Protein RECA; alpha and 63.7 11 0.00036 35.0 5.9 98 1-98 75-194 (356)
193 1ye8_A Protein THEP1, hypothet 57.0 33 0.0011 28.0 7.3 15 43-57 96-110 (178)
194 2ius_A DNA translocase FTSK; n 54.2 9 0.00031 37.4 3.8 75 47-134 297-374 (512)
195 1u94_A RECA protein, recombina 49.4 22 0.00076 32.8 5.5 21 41-61 136-156 (356)
196 3b0c_W CENP-W, centromere prot 49.2 30 0.001 24.0 5.0 32 294-325 39-70 (76)
197 1n1j_A NF-YB; histone-like PAI 46.9 45 0.0015 24.1 5.8 36 293-328 43-78 (93)
198 1id3_B Histone H4; nucleosome 46.4 22 0.00075 26.5 4.0 34 293-326 61-94 (102)
199 1b67_A Protein (histone HMFA); 45.7 16 0.00053 24.8 2.9 33 293-325 35-67 (68)
200 1tue_A Replication protein E1; 45.6 22 0.00076 30.3 4.4 30 92-124 147-179 (212)
201 1taf_B TFIID TBP associated fa 45.5 31 0.0011 23.7 4.4 31 293-323 39-69 (70)
202 2z43_A DNA repair and recombin 44.7 15 0.00051 33.3 3.5 27 35-61 191-218 (324)
203 2ghi_A Transport protein; mult 44.1 56 0.0019 28.4 7.1 53 38-105 165-217 (260)
204 1ny5_A Transcriptional regulat 44.1 11 0.00038 35.1 2.6 93 223-321 272-383 (387)
205 1z6t_A APAF-1, apoptotic prote 43.2 71 0.0024 31.1 8.5 84 46-160 236-322 (591)
206 2yfw_B Histone H4, H4; cell cy 43.2 29 0.00098 25.8 4.2 34 293-326 62-95 (103)
207 2ehv_A Hypothetical protein PH 43.1 47 0.0016 27.9 6.4 79 33-122 122-206 (251)
208 2cbz_A Multidrug resistance-as 43.0 67 0.0023 27.4 7.3 56 38-105 137-192 (237)
209 2ixe_A Antigen peptide transpo 42.9 44 0.0015 29.3 6.3 53 38-103 166-218 (271)
210 1g6h_A High-affinity branched- 42.0 61 0.0021 28.0 7.0 54 38-105 163-216 (257)
211 1tzy_D Histone H4-VI; histone- 41.7 28 0.00097 25.8 4.0 34 293-326 62-95 (103)
212 1u0j_A DNA replication protein 41.5 27 0.00092 30.9 4.5 29 91-122 189-228 (267)
213 1v5w_A DMC1, meiotic recombina 41.4 25 0.00084 32.1 4.4 27 35-61 206-234 (343)
214 2yz2_A Putative ABC transporte 41.0 60 0.0021 28.3 6.8 55 38-106 148-202 (266)
215 4b3f_X DNA-binding protein smu 40.9 12 0.0004 37.6 2.3 33 198-232 212-244 (646)
216 2ff7_A Alpha-hemolysin translo 40.9 74 0.0025 27.4 7.3 53 38-105 155-207 (247)
217 3cmw_A Protein RECA, recombina 40.2 14 0.00049 41.4 3.0 76 25-100 1488-1566(1706)
218 2w0m_A SSO2452; RECA, SSPF, un 40.0 19 0.00064 30.0 3.2 27 33-59 108-136 (235)
219 3sfz_A APAF-1, apoptotic pepti 39.9 1.2E+02 0.004 32.3 10.2 86 46-160 236-322 (1249)
220 3cg6_A Growth arrest and DNA-d 38.9 20 0.00068 28.5 2.8 27 3-29 67-93 (146)
221 1n0w_A DNA repair protein RAD5 37.8 39 0.0013 28.3 4.9 27 35-61 108-134 (243)
222 2hue_C Histone H4; mini beta s 37.1 21 0.00072 25.5 2.6 33 293-325 43-75 (84)
223 2pjz_A Hypothetical protein ST 36.4 96 0.0033 27.0 7.4 51 38-105 138-188 (263)
224 2d2e_A SUFC protein; ABC-ATPas 35.9 66 0.0022 27.7 6.2 54 38-105 153-206 (250)
225 1qhx_A CPT, protein (chloramph 35.6 55 0.0019 25.9 5.3 24 1-24 17-40 (178)
226 3b0c_T CENP-T, centromere prot 35.0 95 0.0032 23.3 6.1 67 254-327 8-74 (111)
227 3ffm_A Growth arrest and DNA-d 34.9 24 0.00081 28.7 2.7 27 3-29 88-114 (167)
228 2zu0_C Probable ATP-dependent 34.6 74 0.0025 27.7 6.3 54 38-105 174-227 (267)
229 1ku5_A HPHA, archaeal histon; 32.3 37 0.0013 23.1 3.1 33 291-323 37-69 (70)
230 2byk_B Chrac-14; nucleosome sl 31.2 1.3E+02 0.0046 23.1 6.5 35 294-328 45-79 (128)
231 3gfo_A Cobalt import ATP-bindi 30.4 67 0.0023 28.3 5.3 56 38-106 153-208 (275)
232 1jfi_B DR1 protein, transcript 30.1 62 0.0021 26.7 4.6 35 294-328 50-84 (179)
233 2r2a_A Uncharacterized protein 29.7 25 0.00084 29.5 2.2 37 222-260 122-158 (199)
234 2cvh_A DNA repair and recombin 29.0 28 0.00094 28.8 2.4 15 46-60 105-119 (220)
235 2nq2_C Hypothetical ABC transp 28.8 1.3E+02 0.0043 25.9 6.8 54 38-104 138-191 (253)
236 2pcj_A ABC transporter, lipopr 27.7 1.1E+02 0.0036 25.8 6.0 52 38-103 150-201 (224)
237 4g1u_C Hemin import ATP-bindin 26.9 1.1E+02 0.0039 26.5 6.2 54 38-104 151-210 (266)
238 2olj_A Amino acid ABC transpor 26.1 1.3E+02 0.0043 26.2 6.3 53 38-104 169-221 (263)
239 1b0u_A Histidine permease; ABC 25.8 1.2E+02 0.0041 26.2 6.1 53 38-104 163-215 (262)
240 1e9r_A Conjugal transfer prote 25.8 2.4E+02 0.0081 26.1 8.6 75 45-139 278-362 (437)
241 3tif_A Uncharacterized ABC tra 25.6 87 0.003 26.6 5.1 53 38-103 155-207 (235)
242 3vh5_A CENP-S; histone fold, c 25.5 59 0.002 25.6 3.5 49 292-340 54-102 (140)
243 2ihy_A ABC transporter, ATP-bi 24.9 91 0.0031 27.4 5.2 56 38-105 171-226 (279)
244 1f2t_B RAD50 ABC-ATPase; DNA d 24.8 2.5E+02 0.0084 21.8 7.5 61 41-122 76-136 (148)
245 3lda_A DNA repair protein RAD5 24.2 52 0.0018 30.8 3.5 66 35-101 262-327 (400)
246 1vpl_A ABC transporter, ATP-bi 24.0 1.4E+02 0.0049 25.7 6.3 53 38-104 156-208 (256)
247 1sgw_A Putative ABC transporte 23.4 91 0.0031 26.2 4.7 55 38-106 143-197 (214)
248 3imk_A Putative molybdenum car 23.4 2.8E+02 0.0097 22.1 7.1 44 1-50 89-132 (158)
249 2ly8_A Budding yeast chaperone 22.8 1.2E+02 0.0041 23.2 4.7 35 293-327 80-114 (121)
250 3b0b_B CENP-S, centromere prot 22.7 64 0.0022 24.2 3.1 37 292-328 54-90 (107)
251 3qkt_A DNA double-strand break 22.5 1.3E+02 0.0046 26.9 6.0 63 39-122 265-327 (339)
252 1f1e_A Histone fold protein; a 22.3 95 0.0032 24.9 4.2 36 293-328 115-150 (154)
253 3auy_A DNA double-strand break 22.1 1.8E+02 0.0063 26.3 6.9 45 44-103 302-347 (371)
254 4a74_A DNA repair and recombin 21.6 39 0.0013 28.0 2.0 27 35-61 109-140 (231)
255 2gk6_A Regulator of nonsense t 20.7 43 0.0015 33.3 2.3 36 197-233 201-236 (624)
256 1ji0_A ABC transporter; ATP bi 20.7 1.8E+02 0.0061 24.6 6.1 52 38-103 149-200 (240)
257 2r6a_A DNAB helicase, replicat 20.2 1.4E+02 0.0048 28.1 5.8 21 41-61 308-328 (454)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.9e-67 Score=537.97 Aligned_cols=344 Identities=35% Similarity=0.544 Sum_probs=262.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|+++|++|+.|+++++.++|.|++++.++.+|+.|+.++||||||||||+|+++|++..+. ...+++++|
T Consensus 252 T~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~---~~~riv~~L 328 (806)
T 3cf2_A 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE---VERRIVSQL 328 (806)
T ss_dssp HHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCT---THHHHHHHH
T ss_pred HHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCCh---HHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999998654433 336889999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|.+|+++...++|+||++||+|+.||++++|||||+..|++++|+.++|.+||+.++++..+..++|+..+|..|.||++
T Consensus 329 L~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408 (806)
T ss_dssp HTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCH
T ss_pred HHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCH
Confidence 99999998888999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred hhHHHHHHHHHHhhcccc-------------------------------cCCCcccCc--------------------cc
Q psy6770 161 ADINAICQEVIMATNRAD-------------------------------TLDPALLRP--------------------GR 189 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~-------------------------------~~~~~~i~~--------------------~~ 189 (362)
+||..+|++|.+.+.+.. ...|+..+. ..
T Consensus 409 aDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~ 488 (806)
T 3cf2_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHH
Confidence 999999999987765431 112222111 12
Q ss_pred hhhhhccCC---------------------Chhhhhhh------------------------------------------
Q psy6770 190 LDRKIEFPL---------------------PDRRQKRL------------------------------------------ 206 (362)
Q Consensus 190 l~~~~~~~~---------------------~~~~~k~~------------------------------------------ 206 (362)
|.+.+.||+ |||||||+
T Consensus 489 l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568 (806)
T ss_dssp HTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHH
Confidence 344555543 78999986
Q ss_pred -------------------------------hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCC
Q psy6770 207 -------------------------------VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLP 255 (362)
Q Consensus 207 -------------------------------~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P 255 (362)
+++++|++||++...++|+||+|||+||.||||++||||||++|||++|
T Consensus 569 ~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 569 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence 6789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC-------------------------
Q psy6770 256 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENR------------------------- 310 (362)
Q Consensus 256 ~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~------------------------- 310 (362)
+.++|.+||+.+++++++..++|++.||+.|+|||||||+++|++|++.|+++..
T Consensus 649 d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (806)
T 3cf2_A 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728 (806)
T ss_dssp --CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------C
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999998732
Q ss_pred CCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhhhc
Q psy6770 311 YIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEKGY 347 (362)
Q Consensus 311 ~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~ 347 (362)
.+|+.+||++|++.++||.. .+.++|++|.++|.+.-
T Consensus 729 ~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~~ 766 (806)
T 3cf2_A 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSR 766 (806)
T ss_dssp CC----CCTTTC---------------CCCC-------
T ss_pred CccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Confidence 26899999999999999987 78899999999998653
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=7.7e-44 Score=372.42 Aligned_cols=344 Identities=34% Similarity=0.527 Sum_probs=266.5
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||++||++++.+++.++++++.+.+.|++++.++.+|+.+....|+++||||+|.+++++.... .....++...+
T Consensus 252 TtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~L 328 (806)
T 1ypw_A 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQL 328 (806)
T ss_dssp HHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC---SHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc---chHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999998874322 23346788899
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
+..++++.....+++|++||.++.+|+++.++|||+..+.++.|+.++|.++++.+.....+..+.++..++..+.||++
T Consensus 329 l~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g 408 (806)
T 1ypw_A 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408 (806)
T ss_dssp HHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCH
T ss_pred HHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcch
Confidence 99999988888999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred hhHHHHHHHHHHhhccccc-------------------------------CCCccc----------Cc---c-------c
Q psy6770 161 ADINAICQEVIMATNRADT-------------------------------LDPALL----------RP---G-------R 189 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~-------------------------------~~~~~i----------~~---~-------~ 189 (362)
+++..+|.++...+.+... ..+... .. . .
T Consensus 409 ~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~ 488 (806)
T 1ypw_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhh
Confidence 9999999998776543210 001000 00 0 1
Q ss_pred hhhhhcc---------------------CCChhhhhhh------------------------------------------
Q psy6770 190 LDRKIEF---------------------PLPDRRQKRL------------------------------------------ 206 (362)
Q Consensus 190 l~~~~~~---------------------~~~~~~~k~~------------------------------------------ 206 (362)
+.+.+.+ ..|||+||+.
T Consensus 489 l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~ 568 (806)
T 1ypw_A 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568 (806)
T ss_dssp HHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHh
Confidence 1112222 2268888876
Q ss_pred -------------------------------hhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCC
Q psy6770 207 -------------------------------VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLP 255 (362)
Q Consensus 207 -------------------------------~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P 255 (362)
++++++++|+++....+++||+|||+|+.||+|++||||||++|+|++|
T Consensus 569 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p 648 (806)
T 1ypw_A 569 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCC
T ss_pred cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCC
Confidence 2355666677777778899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC-------------------------
Q psy6770 256 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENR------------------------- 310 (362)
Q Consensus 256 ~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~------------------------- 310 (362)
+.++|..||+.++++.++..+++++.+++.++||||+||+++|++|++.|+++..
T Consensus 649 ~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (806)
T 1ypw_A 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728 (806)
T ss_dssp CCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CC
T ss_pred CHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccc
Confidence 9999999999999999888899999999999999999999999999999998742
Q ss_pred CCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhhhc
Q psy6770 311 YIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEKGY 347 (362)
Q Consensus 311 ~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~ 347 (362)
..|+.+||++|++..+|+.. .+.++|++|.++|.+.-
T Consensus 729 ~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~~ 766 (806)
T 1ypw_A 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSR 766 (806)
T ss_dssp TTTTTTSSCCCCCC------------------------
T ss_pred CccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 25899999999999999886 67899999999987643
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-43 Score=333.74 Aligned_cols=197 Identities=44% Similarity=0.712 Sum_probs=178.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+|+|+++|++|+.++++++.++|+|++++.++.+|+.|+..+||||||||+|+++++|....++.+....
T Consensus 196 TllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~------ 269 (405)
T 4b4t_J 196 TLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ------ 269 (405)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHH------
T ss_pred HHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHH------
Confidence 58999999999999999999999999999999999999999999999999999999999877433222222112
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 270 -------------------------------------------------------------------------------- 269 (405)
T 4b4t_J 270 -------------------------------------------------------------------------------- 269 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
++++++|++||++...++|+||+|||+|+.||||+
T Consensus 270 ---------------------------------------------~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAl 304 (405)
T 4b4t_J 270 ---------------------------------------------RTMLELLNQLDGFETSKNIKIIMATNRLDILDPAL 304 (405)
T ss_dssp ---------------------------------------------HHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHH
T ss_pred ---------------------------------------------HHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhH
Confidence 23566777777777778899999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
+||||||++|+|++|+.++|.+||+.|++++++..++|++.||+.|+|||||||+++|++|++.|+++++..|+.+||+.
T Consensus 305 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~ 384 (405)
T 4b4t_J 305 LRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFEL 384 (405)
T ss_dssp HSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHH
T ss_pred cCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCc
Q psy6770 321 GYKKCAGM 328 (362)
Q Consensus 321 a~~~~~~~ 328 (362)
|++++.+.
T Consensus 385 Al~~v~~~ 392 (405)
T 4b4t_J 385 AVGKVMNK 392 (405)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCc
Confidence 99988764
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-41 Score=325.46 Aligned_cols=198 Identities=46% Similarity=0.807 Sum_probs=179.5
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+|+|++++++|+.++++++.++|+|++++.++.+|+.|+..+||||||||+|+++++|...+...+....
T Consensus 230 TlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~------ 303 (437)
T 4b4t_I 230 TLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQ------ 303 (437)
T ss_dssp HHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHH------
T ss_pred HHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHH------
Confidence 58999999999999999999999999999999999999999999999999999999999887433222111111
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 304 -------------------------------------------------------------------------------- 303 (437)
T 4b4t_I 304 -------------------------------------------------------------------------------- 303 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
++++++|++||++...++|+||+|||+||.||||+
T Consensus 304 ---------------------------------------------~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpAL 338 (437)
T 4b4t_I 304 ---------------------------------------------RTMLELLNQLDGFDDRGDVKVIMATNKIETLDPAL 338 (437)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTS
T ss_pred ---------------------------------------------HHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHH
Confidence 12566778888888888999999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
+||||||++|+|++|+.++|.+||+.|++++++..++|++.||+.|+|||||||+++|++|++.|+++++..|+.+||+.
T Consensus 339 lRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~ 418 (437)
T 4b4t_I 339 IRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQ 418 (437)
T ss_dssp SCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHH
T ss_pred hcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCch
Q psy6770 321 GYKKCAGMH 329 (362)
Q Consensus 321 a~~~~~~~~ 329 (362)
|++++.++.
T Consensus 419 Al~rv~~~~ 427 (437)
T 4b4t_I 419 AKERVMKNK 427 (437)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhCCC
Confidence 999988763
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-41 Score=326.10 Aligned_cols=209 Identities=40% Similarity=0.662 Sum_probs=178.6
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+|||++++++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+++.+|.+...+......+
T Consensus 257 TlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~----- 331 (467)
T 4b4t_H 257 TLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQR----- 331 (467)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHH-----
T ss_pred HHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHH-----
Confidence 589999999999999999999999999999999999999999999999999999999998874332222221111
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 332 -------------------------------------------------------------------------------- 331 (467)
T 4b4t_H 332 -------------------------------------------------------------------------------- 331 (467)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
+++++|++|+++...++|+||+|||+|+.||||+
T Consensus 332 ----------------------------------------------~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpAL 365 (467)
T 4b4t_H 332 ----------------------------------------------TMLELITQLDGFDPRGNIKVMFATNRPNTLDPAL 365 (467)
T ss_dssp ----------------------------------------------HHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHH
T ss_pred ----------------------------------------------HHHHHHHHhhccCCCCcEEEEeCCCCcccCChhh
Confidence 2455667777777778899999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
+||||||++|+|++|+.++|.+||+.|++++++..++|++.||+.|+|||||||+++|++|++.|+++++..|+.+||+.
T Consensus 366 lRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~ 445 (467)
T 4b4t_H 366 LRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLK 445 (467)
T ss_dssp HSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHH
T ss_pred hccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCchH--HHHHHHHhch
Q psy6770 321 GYKKCAGMHA--VRENRYIVLP 340 (362)
Q Consensus 321 a~~~~~~~~~--~~~~~~~~~~ 340 (362)
|++++.+... ....+|.+|+
T Consensus 446 Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 446 AVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp HHHHHHHHHCC-----------
T ss_pred HHHHHhcCcccchhHHHHHhhC
Confidence 9999876532 3455666653
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-41 Score=325.85 Aligned_cols=199 Identities=44% Similarity=0.704 Sum_probs=179.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+|||+++|++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+++++|.+.+...+....+
T Consensus 229 TllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~----- 303 (437)
T 4b4t_L 229 TLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQR----- 303 (437)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHH-----
T ss_pred HHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHH-----
Confidence 589999999999999999999999999999999999999999999999999999999998874332222211111
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 304 -------------------------------------------------------------------------------- 303 (437)
T 4b4t_L 304 -------------------------------------------------------------------------------- 303 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
+++++|++||++...++|+||+|||+||.||||+
T Consensus 304 ----------------------------------------------~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAl 337 (437)
T 4b4t_L 304 ----------------------------------------------TLMELLTQMDGFDNLGQTKIIMATNRPDTLDPAL 337 (437)
T ss_dssp ----------------------------------------------HHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTT
T ss_pred ----------------------------------------------HHHHHHHHhhcccCCCCeEEEEecCCchhhCHHH
Confidence 2456777777777778899999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
+||||||++|+|++|+.++|.+||+.|++++++..++|++.||+.|+|||||||+++|++|++.|++++...|+.+||..
T Consensus 338 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~ 417 (437)
T 4b4t_L 338 LRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMK 417 (437)
T ss_dssp TSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred hCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCchH
Q psy6770 321 GYKKCAGMHA 330 (362)
Q Consensus 321 a~~~~~~~~~ 330 (362)
|++++.|+..
T Consensus 418 Al~~v~~~~k 427 (437)
T 4b4t_L 418 AVRKVAEVKK 427 (437)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHhccC
Confidence 9999888643
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-41 Score=327.57 Aligned_cols=198 Identities=40% Similarity=0.679 Sum_probs=179.1
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+|+|+++|++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+++++|.+...+.+....
T Consensus 229 TllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~------ 302 (434)
T 4b4t_M 229 TLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQ------ 302 (434)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHH------
T ss_pred HHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHH------
Confidence 58999999999999999999999999999999999999999999999999999999999887432222111111
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 303 -------------------------------------------------------------------------------- 302 (434)
T 4b4t_M 303 -------------------------------------------------------------------------------- 302 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
++++++|++||++.+.++|+||+|||+|+.||||+
T Consensus 303 ---------------------------------------------~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~Al 337 (434)
T 4b4t_M 303 ---------------------------------------------RTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPAL 337 (434)
T ss_dssp ---------------------------------------------HHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTT
T ss_pred ---------------------------------------------HHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhH
Confidence 12456777788887778899999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~ 320 (362)
+||||||++|+|++|+.++|.+||+.|++++++..++|++.||+.|+|||||||+++|++|++.|++++...|+.+||..
T Consensus 338 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~ 417 (434)
T 4b4t_M 338 LRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVE 417 (434)
T ss_dssp CSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHH
T ss_pred hcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCch
Q psy6770 321 GYKKCAGMH 329 (362)
Q Consensus 321 a~~~~~~~~ 329 (362)
|+++++|+.
T Consensus 418 Al~~v~~~~ 426 (434)
T 4b4t_M 418 GISEVQARK 426 (434)
T ss_dssp HHHSCSSSC
T ss_pred HHHHHhCCC
Confidence 999998863
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-40 Score=320.48 Aligned_cols=196 Identities=61% Similarity=0.945 Sum_probs=176.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+|+|+++|++|+.++++++.++|+|++++.++.+|+.|+..+||||||||+|+++++|.+...+.+..
T Consensus 220 T~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~-------- 291 (428)
T 4b4t_K 220 TMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDRE-------- 291 (428)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCH--------
T ss_pred HHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChH--------
Confidence 589999999999999999999999999999999999999999999999999999999998773322111110
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 292 -------------------------------------------------------------------------------- 291 (428)
T 4b4t_K 292 -------------------------------------------------------------------------------- 291 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
..++++++|++||++....+|+||+|||+|+.||||+
T Consensus 292 -------------------------------------------~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~Al 328 (428)
T 4b4t_K 292 -------------------------------------------VQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPAL 328 (428)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHH
T ss_pred -------------------------------------------HHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhh
Confidence 0123577888999988888999999999999999999
Q ss_pred cCCCCcceeEEec-CCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy6770 241 LRPGRLDRKIEFP-LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319 (362)
Q Consensus 241 ~RpgRfd~~i~~~-~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~ 319 (362)
+||||||++|+|| +|+.++|..||+.|++++++.+++|++.||..|+|||||||+++|++|++.|+++++..|+.+||+
T Consensus 329 lRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~ 408 (428)
T 4b4t_K 329 LRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 408 (428)
T ss_dssp HSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred hcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 9999999999996 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q psy6770 320 KGYKKCAG 327 (362)
Q Consensus 320 ~a~~~~~~ 327 (362)
+|+....+
T Consensus 409 ~A~~~~~~ 416 (428)
T 4b4t_K 409 EAYATQVK 416 (428)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhhC
Confidence 99986543
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.6e-36 Score=307.93 Aligned_cols=178 Identities=35% Similarity=0.600 Sum_probs=135.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+|+|++++++|+.+++++++++|+|+++++++.+|+.|+..+||||||||||+++++|+...+..+....+++++|
T Consensus 525 T~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~l 604 (806)
T 3cf2_A 525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 604 (806)
T ss_dssp HHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHH
T ss_pred hHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999998654444444557899999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|++||++....+|+||+|||+||.||+|++||||||+.|+|++|+.++|.+||+.++++.++..++|++.+|+.|.||||
T Consensus 605 L~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SG 684 (806)
T 3cf2_A 605 LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684 (806)
T ss_dssp HHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred HHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCH
Confidence 99999998888999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred hhHHHHHHHHHHhhcccc
Q psy6770 161 ADINAICQEVIMATNRAD 178 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~ 178 (362)
+||.++|++|++.+.+..
T Consensus 685 adi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 685 ADLTEICQRACKLAIRES 702 (806)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988763
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=6e-30 Score=238.92 Aligned_cols=212 Identities=31% Similarity=0.493 Sum_probs=181.1
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++.+|+.++++++.++|+|++++.++.+|+.|....|+||||||+|.+++.++.......
T Consensus 63 T~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~---------- 132 (301)
T 3cf0_A 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG---------- 132 (301)
T ss_dssp HHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSS----------
T ss_pred HHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcc----------
Confidence 5799999999999999999999999999999999999999999999999999999999866521100000
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
.
T Consensus 133 ----------------------------------------------------------------~--------------- 133 (301)
T 3cf0_A 133 ----------------------------------------------------------------G--------------- 133 (301)
T ss_dssp ----------------------------------------------------------------C---------------
T ss_pred ----------------------------------------------------------------h---------------
Confidence 0
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
...+++++++..|+++....+++||+|||+|+.||+++
T Consensus 134 ------------------------------------------~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al 171 (301)
T 3cf0_A 134 ------------------------------------------AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI 171 (301)
T ss_dssp ------------------------------------------SCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGG
T ss_pred ------------------------------------------HHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHH
Confidence 00012344555666665567899999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC----------
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENR---------- 310 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~---------- 310 (362)
+|||||+..+++++|+.++|.+||+.++++.++..+++++.++..+.||||+||+++|++|++.|+++..
T Consensus 172 ~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~ 251 (301)
T 3cf0_A 172 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERER 251 (301)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 9999999999999999999999999999998887889999999999999999999999999999886531
Q ss_pred ---------------CCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHH
Q psy6770 311 ---------------YIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDF 343 (362)
Q Consensus 311 ---------------~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~ 343 (362)
..|+.+||..|++.++|+.. .+.++|++|.++|
T Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 252 QTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp --------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999876 5779999999987
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=231.37 Aligned_cols=210 Identities=31% Similarity=0.481 Sum_probs=176.3
Q ss_pred CcHHHHHHhhh-CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHH
Q psy6770 1 YLLCTSFDTEL-VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~-~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~ 79 (362)
|+||+++|+++ +.+|+.++++++.++|.|++++.++.+|+.++..+|+||||||+|.+++++.... .....+++++
T Consensus 59 T~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ 135 (322)
T 1xwi_A 59 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTE 135 (322)
T ss_dssp HHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc---chHHHHHHHH
Confidence 57999999999 9999999999999999999999999999999999999999999999998874432 2233456666
Q ss_pred HHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCc
Q psy6770 80 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRIS 159 (362)
Q Consensus 80 lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s 159 (362)
++..|+++..
T Consensus 136 ll~~ld~~~~---------------------------------------------------------------------- 145 (322)
T 1xwi_A 136 FLVQMQGVGV---------------------------------------------------------------------- 145 (322)
T ss_dssp HHHHHHCSSS----------------------------------------------------------------------
T ss_pred HHHHHhcccc----------------------------------------------------------------------
Confidence 6666554210
Q ss_pred HhhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCcc
Q psy6770 160 GADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPA 239 (362)
Q Consensus 160 ~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a 239 (362)
...+++||+|||+|+.||++
T Consensus 146 ------------------------------------------------------------~~~~v~vI~atn~~~~ld~a 165 (322)
T 1xwi_A 146 ------------------------------------------------------------DNDGILVLGATNIPWVLDSA 165 (322)
T ss_dssp ------------------------------------------------------------CCTTEEEEEEESCTTTSCHH
T ss_pred ------------------------------------------------------------cCCCEEEEEecCCcccCCHH
Confidence 12356888888888888888
Q ss_pred ccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC--------
Q psy6770 240 LLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVRENR-------- 310 (362)
Q Consensus 240 ~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~-------- 310 (362)
++| |||..+++++|+.++|.+||+.++++.+.. ++.+++.|++.|+||||+||.++|++|++.|+++..
T Consensus 166 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~ 243 (322)
T 1xwi_A 166 IRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKV 243 (322)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEE
T ss_pred HHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 888 888888888888888888888888776654 567899999999999999999999999999987621
Q ss_pred -----------------------------------------CCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhh
Q psy6770 311 -----------------------------------------YIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEK 345 (362)
Q Consensus 311 -----------------------------------------~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 345 (362)
.+|+.+||+.|++.++|+.. .+.++|++|.++|+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 244 RGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred ccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 26899999999999999986 678999999999974
No 12
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=1.5e-28 Score=231.60 Aligned_cols=210 Identities=29% Similarity=0.417 Sum_probs=177.0
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++.+|+.++++++.++|.|++++.++.+|+.++..+|+||||||+|.+.+++....... ..+
T Consensus 65 T~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~---~~~----- 136 (322)
T 3eie_A 65 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA---SRR----- 136 (322)
T ss_dssp HHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CC---THH-----
T ss_pred HHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchH---HHH-----
Confidence 579999999999999999999999999999999999999999999999999999999976542110000 001
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 137 -------------------------------------------------------------------------------- 136 (322)
T 3eie_A 137 -------------------------------------------------------------------------------- 136 (322)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhh-ccCCeEEEEecCCCCCCCcc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFML-NIGNLQVIMATNRADTLDPA 239 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~-~~~~v~vi~aTn~~~~lD~a 239 (362)
+.++++..|+++. ...+++||+|||+|+.||++
T Consensus 137 ----------------------------------------------~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~a 170 (322)
T 3eie_A 137 ----------------------------------------------IKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 170 (322)
T ss_dssp ----------------------------------------------HHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHH
T ss_pred ----------------------------------------------HHHHHHHHhccccccCCceEEEEecCChhhCCHH
Confidence 1233455555553 34578999999999999999
Q ss_pred ccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC--------
Q psy6770 240 LLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVRENR-------- 310 (362)
Q Consensus 240 ~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~-------- 310 (362)
++| ||+..+++++|+.++|.+||+.++++.+.. ++.+++.|++.|+||||+||.++|++|++.|+++..
T Consensus 171 l~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 171 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999 999999999999999999999999987654 567899999999999999999999999999988632
Q ss_pred -----------------------------------CCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhhh
Q psy6770 311 -----------------------------------YIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEKG 346 (362)
Q Consensus 311 -----------------------------------~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 346 (362)
.+|+.+||..|++.++|+.. .+.++|++|.++|+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 35999999999999999876 6889999999999853
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1e-28 Score=242.70 Aligned_cols=240 Identities=31% Similarity=0.500 Sum_probs=180.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++++|+.++++++.+.+.|.++..++.+|..|+..+||||||||+|.+..+++....+.+....+.++++
T Consensus 63 T~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~L 142 (476)
T 2ce7_A 63 TLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQL 142 (476)
T ss_dssp HHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999888654444455557889999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|..|+++....+++||++||.|+.+|++++|||||+..|.+++|+.++|.+|++.+++..++..++++..++..+.|+++
T Consensus 143 L~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sg 222 (476)
T 2ce7_A 143 LVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVG 222 (476)
T ss_dssp HHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCH
T ss_pred HHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcH
Confidence 99999887777999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
+||.++|++|+..+.+.. ...+....+...+....+....+..+++.--.....+++.++.++-.....++.+.+--
T Consensus 223 adL~~lv~~Aal~A~~~~---~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~ 299 (476)
T 2ce7_A 223 ADLENLVNEAALLAAREG---RDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRIS 299 (476)
T ss_dssp HHHHHHHHHHHHHHHHTT---CSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHcC---CCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceee
Confidence 999999999998876543 12344444444444332222223333333333344444444433333334445555544
Q ss_pred cCC
Q psy6770 241 LRP 243 (362)
Q Consensus 241 ~Rp 243 (362)
+.|
T Consensus 300 i~p 302 (476)
T 2ce7_A 300 IIP 302 (476)
T ss_dssp CC-
T ss_pred eec
Confidence 444
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=8.9e-28 Score=229.22 Aligned_cols=209 Identities=29% Similarity=0.420 Sum_probs=171.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++.+|+.++++++.+.|.|++++.++.+|..++..+|+||||||+|.+.+.+.... .....++.
T Consensus 98 T~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~--- 171 (355)
T 2qp9_X 98 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE---SEASRRIK--- 171 (355)
T ss_dssp HHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHH---
T ss_pred HHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc---chHHHHHH---
Confidence 579999999999999999999999999999999999999999999999999999999976652111 00111222
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 172 -------------------------------------------------------------------------------- 171 (355)
T 2qp9_X 172 -------------------------------------------------------------------------------- 171 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhc-cCCeEEEEecCCCCCCCcc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLN-IGNLQVIMATNRADTLDPA 239 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~-~~~v~vi~aTn~~~~lD~a 239 (362)
++++..|+++.. ..+++||++||+|+.||++
T Consensus 172 ------------------------------------------------~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~a 203 (355)
T 2qp9_X 172 ------------------------------------------------TELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203 (355)
T ss_dssp ------------------------------------------------HHHHHHHHHCC---CCEEEEEEESCGGGSCHH
T ss_pred ------------------------------------------------HHHHHHhhcccccCCCeEEEeecCCcccCCHH
Confidence 234444444432 3568999999999999999
Q ss_pred ccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc---------
Q psy6770 240 LLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVREN--------- 309 (362)
Q Consensus 240 ~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~--------- 309 (362)
++| ||+..+++++|+.++|.+||+.++++.+.. ++.+++.|++.|+||||+||.++|++|++.|+++.
T Consensus 204 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 281 (355)
T 2qp9_X 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 281 (355)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999 999999999999999999999999887653 56789999999999999999999999999999862
Q ss_pred ----------------------------------CCCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhh
Q psy6770 310 ----------------------------------RYIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEK 345 (362)
Q Consensus 310 ----------------------------------~~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 345 (362)
..+|+.+||..|++.++|+.. .+.++|++|.++|+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 282 STEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp CC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred ccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 125999999999999999986 678999999999975
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=212.54 Aligned_cols=174 Identities=37% Similarity=0.618 Sum_probs=151.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+|+++||++++.+++.++++++.+.|.|++++.++.+|+.++...||++|+||+|.++..++.... ....+.++++
T Consensus 58 TtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~ 134 (274)
T 2x8a_A 58 TLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQL 134 (274)
T ss_dssp HHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999876633211 1124678999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHcc---CCCCCcCCHHHHHhcCC-
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK---MNLSDEVDLEDYVARPD- 156 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~---~~~~~~~dl~~la~~t~- 156 (362)
+.+|++......++++++||.|+.+|++++|||||+..|++++|+.++|.+||+.+++. .....++++..++..+.
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~ 214 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRC 214 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGG
T ss_pred HHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhcc
Confidence 99999988888899999999999999999999999999999999999999999999854 23456889999999754
Q ss_pred -CCcHhhHHHHHHHHHHhhccc
Q psy6770 157 -RISGADINAICQEVIMATNRA 177 (362)
Q Consensus 157 -g~s~~di~~l~~~a~~~~~r~ 177 (362)
||||+||.++|++|.+.+.+.
T Consensus 215 ~g~sgadl~~l~~~a~~~a~~~ 236 (274)
T 2x8a_A 215 DCYTGADLSALVREASICALRQ 236 (274)
T ss_dssp GSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887664
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=5.9e-27 Score=229.86 Aligned_cols=210 Identities=31% Similarity=0.477 Sum_probs=165.7
Q ss_pred CcHHHHHHhhh-CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHH
Q psy6770 1 YLLCTSFDTEL-VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~-~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~ 79 (362)
|+||+++|+++ +.+|+.++++++.++|.|++++.++.+|+.++..+|+||||||+|.+++++..... ....+++++
T Consensus 181 T~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~ 257 (444)
T 2zan_A 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES---EAARRIKTE 257 (444)
T ss_dssp HHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCC---GGGHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccc---cHHHHHHHH
Confidence 57999999999 99999999999999999999999999999999999999999999999987744322 122345555
Q ss_pred HHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCc
Q psy6770 80 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRIS 159 (362)
Q Consensus 80 lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s 159 (362)
||..|+++..
T Consensus 258 lL~~l~~~~~---------------------------------------------------------------------- 267 (444)
T 2zan_A 258 FLVQMQGVGV---------------------------------------------------------------------- 267 (444)
T ss_dssp HHTTTTCSSC----------------------------------------------------------------------
T ss_pred HHHHHhCccc----------------------------------------------------------------------
Confidence 5544443210
Q ss_pred HhhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCcc
Q psy6770 160 GADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPA 239 (362)
Q Consensus 160 ~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a 239 (362)
...+++||+|||+|+.||++
T Consensus 268 ------------------------------------------------------------~~~~v~vI~atn~~~~ld~a 287 (444)
T 2zan_A 268 ------------------------------------------------------------DNDGILVLGATNIPWVLDSA 287 (444)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEESCGGGSCHH
T ss_pred ------------------------------------------------------------CCCCEEEEecCCCccccCHH
Confidence 12356888888888888999
Q ss_pred ccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc---------
Q psy6770 240 LLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVREN--------- 309 (362)
Q Consensus 240 ~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~--------- 309 (362)
++| ||+..+++++|+.++|..||+.++++.+.. ++.+++.|++.|+||||+||.++|++|++.|+++.
T Consensus 288 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~ 365 (444)
T 2zan_A 288 IRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKV 365 (444)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEE
T ss_pred HHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 888 999999999999999999999888876653 56789999999999999999999999999999762
Q ss_pred ----------------------------------------CCCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhh
Q psy6770 310 ----------------------------------------RYIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEK 345 (362)
Q Consensus 310 ----------------------------------------~~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 345 (362)
..+|+++||..|+..++|+.. .+.+.|++|.++|+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~ 442 (444)
T 2zan_A 366 RGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442 (444)
T ss_dssp CCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTT
T ss_pred ccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC
Confidence 026899999999999999986 678999999999975
No 17
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=2.3e-26 Score=227.22 Aligned_cols=177 Identities=38% Similarity=0.629 Sum_probs=161.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||++||++++.+++.++++++.+.+.|.+.+.++.+|+.++...|||+||||||.+...+............+.++++
T Consensus 78 TtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~L 157 (499)
T 2dhr_A 78 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 157 (499)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988899999999999998877543233345557889999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|.+|++......++++++||.|+.+|++++|||||+..|++++|+.++|.+||+.++++..+.+++++..++..+.|+++
T Consensus 158 L~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~g 237 (499)
T 2dhr_A 158 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG 237 (499)
T ss_dssp HHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCH
T ss_pred HHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCH
Confidence 99999987778899999999999999999999999999999999999999999999988888888899999999999999
Q ss_pred hhHHHHHHHHHHhhccc
Q psy6770 161 ADINAICQEVIMATNRA 177 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~ 177 (362)
+||.++|++|+..+.+.
T Consensus 238 adL~~lv~~Aa~~A~~~ 254 (499)
T 2dhr_A 238 ADLENLLNEAALLAARE 254 (499)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 18
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.93 E-value=9.4e-25 Score=198.86 Aligned_cols=177 Identities=37% Similarity=0.622 Sum_probs=160.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++.+++.++++++.+.+.|++++.++.+|+.+....|+++||||+|.+...+.....+......+.++.+
T Consensus 59 T~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1lv7_A 59 TLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 138 (257)
T ss_dssp HHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999877544333334445788999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|..++++....+++||++||.++.+|+++.|+|||+..+++++|+.++|.+|++.+++..++..+.++..++..+.||++
T Consensus 139 l~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 139 LVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSG 218 (257)
T ss_dssp HHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCH
T ss_pred HHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCH
Confidence 99999987788999999999999999999999999999999999999999999999998888888889999999999999
Q ss_pred hhHHHHHHHHHHhhccc
Q psy6770 161 ADINAICQEVIMATNRA 177 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~ 177 (362)
+||.++|++|...+.+.
T Consensus 219 ~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 219 ADLANLVNEAALFAARG 235 (257)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=4.6e-24 Score=196.97 Aligned_cols=177 Identities=54% Similarity=0.861 Sum_probs=164.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++.+++.++++++.+.+.|+++..++.+|..+....|+||||||+|.+++++.+...+.+......+..+
T Consensus 65 T~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~l 144 (285)
T 3h4m_A 65 TLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQL 144 (285)
T ss_dssp HHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999988766555566677889999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
+..++++....++++|+|||.++.+|++++|+|||+..++++.|+.++|.+|++.++.......+.++..++..+.|+++
T Consensus 145 l~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 145 LAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVG 224 (285)
T ss_dssp HHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCH
T ss_pred HHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCH
Confidence 99999887778999999999999999999999999999999999999999999999998888788899999999999999
Q ss_pred hhHHHHHHHHHHhhccc
Q psy6770 161 ADINAICQEVIMATNRA 177 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~ 177 (362)
++|..+|+.|...+.+.
T Consensus 225 ~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 225 AELKAICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.91 E-value=4.2e-24 Score=203.99 Aligned_cols=212 Identities=30% Similarity=0.493 Sum_probs=174.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++++|+.++++++.+.|.|++++.++.+|..+...+|+||||||+|.+++.+.... .....++++++
T Consensus 131 T~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~l 207 (357)
T 3d8b_A 131 TLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE---HESSRRIKTEF 207 (357)
T ss_dssp HHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc---chHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999987652211 11223444444
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|..+++..
T Consensus 208 L~~l~~~~------------------------------------------------------------------------ 215 (357)
T 3d8b_A 208 LVQLDGAT------------------------------------------------------------------------ 215 (357)
T ss_dssp HHHHHC--------------------------------------------------------------------------
T ss_pred HHHHhccc------------------------------------------------------------------------
Confidence 44443210
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~ 240 (362)
.....+++||+|||.++.||+++
T Consensus 216 ---------------------------------------------------------~~~~~~v~vI~atn~~~~l~~~l 238 (357)
T 3d8b_A 216 ---------------------------------------------------------TSSEDRILVVGATNRPQEIDEAA 238 (357)
T ss_dssp -----------------------------------------------------------CCCCEEEEEEESCGGGBCHHH
T ss_pred ---------------------------------------------------------ccCCCCEEEEEecCChhhCCHHH
Confidence 00124679999999999999999
Q ss_pred cCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc----------
Q psy6770 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVREN---------- 309 (362)
Q Consensus 241 ~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~---------- 309 (362)
+| ||+..+++++|+.++|.++++.++.+.... .+.+++.+++.+.||||+||..+|++|++.++++-
T Consensus 239 ~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~ 316 (357)
T 3d8b_A 239 RR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITP 316 (357)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--------
T ss_pred Hh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 99 999999999999999999999999775443 34578889999999999999999999999999852
Q ss_pred --CCCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhhh
Q psy6770 310 --RYIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEKG 346 (362)
Q Consensus 310 --~~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 346 (362)
..+|+.+||..|+..++|+.. .+.++|++|.+.|+.+
T Consensus 317 ~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 317 DQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp --CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred cccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 358999999999999999775 6789999999999853
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.91 E-value=1e-23 Score=208.54 Aligned_cols=175 Identities=38% Similarity=0.597 Sum_probs=160.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||++||++++.+|+.++++++.+.+.|+++..++.+|+.|...+|++|||||||.+++++.... .....++...|
T Consensus 252 T~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~---~~~~~~~~~~L 328 (489)
T 3hu3_A 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQL 328 (489)
T ss_dssp HHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc---chHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999998874332 23346788889
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|..|+++....+++||+|||.++.+|++++|+|||+..+++++|+.++|.+|++.++.......+.++..++..+.||++
T Consensus 329 L~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~ 408 (489)
T 3hu3_A 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408 (489)
T ss_dssp HHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCH
T ss_pred HHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcH
Confidence 99999887788999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred hhHHHHHHHHHHhhcccc
Q psy6770 161 ADINAICQEVIMATNRAD 178 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~ 178 (362)
+||..+|++|.+.+.+..
T Consensus 409 ~dL~~L~~~A~~~a~r~~ 426 (489)
T 3hu3_A 409 ADLAALCSEAALQAIRKK 426 (489)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999887653
No 22
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=3.6e-26 Score=238.98 Aligned_cols=178 Identities=35% Similarity=0.600 Sum_probs=156.5
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||++||++++.+|+.++++++.++|+|++++.++.+|+.|+...||||||||||.++..+.......+....+++++|
T Consensus 525 T~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~L 604 (806)
T 1ypw_A 525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 604 (806)
T ss_dssp HHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999888554333344567899999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
|+.|+++....+++||+|||.|+.+|++++|||||+..|+++.|+.++|..||+.++++..+..++++..++..+.|||+
T Consensus 605 L~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg 684 (806)
T 1ypw_A 605 LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684 (806)
T ss_dssp HTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCC
T ss_pred HHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCH
Confidence 99999998888999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred hhHHHHHHHHHHhhcccc
Q psy6770 161 ADINAICQEVIMATNRAD 178 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~ 178 (362)
+||.++|++|.+.+.+..
T Consensus 685 adi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 685 ADLTEICQRACKLAIRES 702 (806)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887764
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.90 E-value=3.9e-23 Score=187.76 Aligned_cols=177 Identities=38% Similarity=0.629 Sum_probs=154.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+|+++||++++.+++.+++.++.+.+.|+..+.+..+|+.+....|+++++||+|.++..+..............++++
T Consensus 63 Ttl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l 142 (254)
T 1ixz_A 63 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 142 (254)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH
Confidence 57999999999999999999999998999999999999999988889999999999998776432222344556788999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
+.+|++......++++++||.|+.+|++++|+|||+..++++.|+.++|.+||+.+.+...+..+.++..++..+.|+++
T Consensus 143 l~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~ 222 (254)
T 1ixz_A 143 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG 222 (254)
T ss_dssp HHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCH
T ss_pred HHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCH
Confidence 99999887777899999999999999999999999999999999999999999999988877788899999999999999
Q ss_pred hhHHHHHHHHHHhhccc
Q psy6770 161 ADINAICQEVIMATNRA 177 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~ 177 (362)
+||.++|++|...+.+.
T Consensus 223 ~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 223 ADLENLLNEAALLAARE 239 (254)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998877654
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.90 E-value=8.4e-24 Score=192.52 Aligned_cols=177 Identities=37% Similarity=0.610 Sum_probs=142.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCC-CcHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~-~~~~~~~~l~~ 79 (362)
|+||+++|++++.+++.++++++.+.+.|+++..++.+|+.+....|+||||||+|.++.++.....+ .+......++.
T Consensus 53 T~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ 132 (262)
T 2qz4_A 53 TLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQ 132 (262)
T ss_dssp HHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHH
T ss_pred HHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999998876432211 12233467889
Q ss_pred HHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCC--HHHHHhcCCC
Q psy6770 80 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVD--LEDYVARPDR 157 (362)
Q Consensus 80 lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~d--l~~la~~t~g 157 (362)
++..++++....++++|+|||.++.+|++++|+|||+..++++.|+.++|.+|++.++...+...+.+ ...++..+.|
T Consensus 133 ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g 212 (262)
T 2qz4_A 133 LLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPG 212 (262)
T ss_dssp HHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTT
T ss_pred HHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCC
Confidence 99999988777899999999999999999999999999999999999999999999998877654333 4789999999
Q ss_pred CcHhhHHHHHHHHHHhhccc
Q psy6770 158 ISGADINAICQEVIMATNRA 177 (362)
Q Consensus 158 ~s~~di~~l~~~a~~~~~r~ 177 (362)
+++++|..+|++|...+.+.
T Consensus 213 ~~~~~l~~l~~~a~~~a~~~ 232 (262)
T 2qz4_A 213 FSGADIANICNEAALHAARE 232 (262)
T ss_dssp CCHHHHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHHHHHHHHHc
Confidence 99999999999998877654
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.90 E-value=1.2e-23 Score=195.36 Aligned_cols=209 Identities=27% Similarity=0.485 Sum_probs=166.5
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++.+|+.++++++.+.+.|++++.++.+|..+...+|+||||||+|.++..+........ .+.
T Consensus 68 T~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~---~~~---- 140 (297)
T 3b9p_A 68 TLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEAS---RRL---- 140 (297)
T ss_dssp HHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCS---HHH----
T ss_pred HHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHH---HHH----
Confidence 5799999999999999999999999999999999999999999999999999999999865411000000 000
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 141 -------------------------------------------------------------------------------- 140 (297)
T 3b9p_A 141 -------------------------------------------------------------------------------- 140 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhc---cCCeEEEEecCCCCCCC
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLN---IGNLQVIMATNRADTLD 237 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~---~~~v~vi~aTn~~~~lD 237 (362)
.++++..++++.. .++++||++||+|+.+|
T Consensus 141 -----------------------------------------------~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 141 -----------------------------------------------KTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp -----------------------------------------------HHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred -----------------------------------------------HHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 1122223333221 24689999999999999
Q ss_pred ccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc-------
Q psy6770 238 PALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVREN------- 309 (362)
Q Consensus 238 ~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~------- 309 (362)
++++| ||+..+++++|+.++|..|++.++.+.+.. ++.+++.+++.+.||+|+||..+|++|++.++++.
T Consensus 174 ~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~ 251 (297)
T 3b9p_A 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC 251 (297)
T ss_dssp HHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred HHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999 999999999999999999999999876543 34568889999999999999999999999999874
Q ss_pred -----CCCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhh
Q psy6770 310 -----RYIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEK 345 (362)
Q Consensus 310 -----~~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 345 (362)
...|+.+||..|+..++|+.. ...++|++|.+.|+.
T Consensus 252 ~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 252 LDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp --CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred ccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 257999999999999999765 677999999999874
No 26
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=1.5e-25 Score=220.84 Aligned_cols=308 Identities=13% Similarity=0.149 Sum_probs=193.3
Q ss_pred CcHHHHHHhhhC--CcEEEEechhhhhhhcCchHHHHHHHHHHH---HHcCCeEEEeccccccccccCCCCCCCcH-HHH
Q psy6770 1 YLLCTSFDTELV--TAFIRVVGSEFVQKYLGEGPRMVRDVFRLA---KENSPAIIFIDEIDAIATKRFDAQTGADR-EVQ 74 (362)
Q Consensus 1 slLakaiA~e~~--~~~~~v~~s~l~~~~~gese~~l~~~F~~a---~~~~P~II~iDeiD~l~~~r~~~~~~~~~-~~~ 74 (362)
|+||+++|++++ ++|+.++++++.++|.|++++ ++.+|+.| +..+||||||||+|+++++|.....+... ...
T Consensus 77 T~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~ 155 (456)
T 2c9o_A 77 TALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTIS 155 (456)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------
T ss_pred HHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHH
Confidence 579999999999 999999999999999999998 99999999 78889999999999999988544221111 011
Q ss_pred ---------------HHHHHHHHhcc--CCCCCCCeEEEEEcCCCCCCCccccCCCccee--EEEccCCC--HHHHHHHH
Q psy6770 75 ---------------RILLELLNQMD--GFDQTTNVKVIMATNRADTLDPALLRPGRLDR--KIEFPLPD--RRQKRLVF 133 (362)
Q Consensus 75 ---------------~~l~~lL~~ld--~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~--~i~i~~P~--~~~r~~il 133 (362)
++.+.++..++ ++..++.+++++|||.++.+|+++.||||||. .++++.|+ .++|.+|+
T Consensus 156 ~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il 235 (456)
T 2c9o_A 156 HVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEII 235 (456)
T ss_dssp CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEE
T ss_pred HHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHH
Confidence 12234555554 33344456667899999999999999999998 66777774 46788777
Q ss_pred HHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCc--cchhhh-----------hccCCCh
Q psy6770 134 STITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRP--GRLDRK-----------IEFPLPD 200 (362)
Q Consensus 134 ~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~--~~l~~~-----------~~~~~~~ 200 (362)
+.+.. .|++.++..+.| |+|+.++|....... ...+.....+. ..+.+. +-+.-.-
T Consensus 236 ~~~~~-------~dl~~~a~~t~g--gadl~~l~~~i~~p~--~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa 304 (456)
T 2c9o_A 236 QDVTL-------HDLDVANARPQG--GQDILSMMGQLMKPK--KTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEV 304 (456)
T ss_dssp EEEEH-------HHHHHTC---------------------------------CHHHHHHHHHHHTTSEEEEECEEEEESG
T ss_pred HHHHH-------HHHHHHHHhCCC--hhHHHHHHhhhcccc--hhhHHHHHHHHHHHHHHHHHHhccccccceEEEEech
Confidence 65442 268899999999 999999996421100 00000000000 000000 0000000
Q ss_pred hhhhhhhhhhhhhhhhhhhccCCeEEEEe---------cC---CCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh
Q psy6770 201 RRQKRLVFSTITAKMNFMLNIGNLQVIMA---------TN---RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 268 (362)
Q Consensus 201 ~~~k~~~~~~~l~~~~~~~~~~~v~vi~a---------Tn---~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l 268 (362)
..-....++.++..|+.... +++++++ |+ .|+.|+|.++- ||-. +.|+.|+.++..++++..+
T Consensus 305 ~~l~~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~ 379 (456)
T 2c9o_A 305 HMLDIECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRA 379 (456)
T ss_dssp GGCBHHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHH
Confidence 00112356777776665543 3544444 32 27889999998 9988 5999999999999999877
Q ss_pred ccCCCC-CCCCHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 269 AKMNLS-DEVDLEDYVARP-DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 269 ~~~~~~-~~~~~~~la~~~-~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
...... ++-.+..+++.+ .| +....-.++..|...|..++...|+.+|+..++.-+-
T Consensus 380 ~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 380 QTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFY 438 (456)
T ss_dssp HHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSC
T ss_pred HHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhc
Confidence 533322 122355667666 55 7788888999999999888999999999999987543
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.89 E-value=8.3e-23 Score=197.20 Aligned_cols=209 Identities=27% Similarity=0.462 Sum_probs=162.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||++||++++.+|+.++++++.+.|.|+++..++.+|+.++..+|+||||||||.++..+...... ...++...
T Consensus 162 T~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~---~~~~~~~~- 237 (389)
T 3vfd_A 162 TMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHD---ASRRLKTE- 237 (389)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------C---THHHHHHH-
T ss_pred HHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccch---HHHHHHHH-
Confidence 57999999999999999999999999999999999999999999999999999999997654211100 01122222
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
T Consensus 238 -------------------------------------------------------------------------------- 237 (389)
T 3vfd_A 238 -------------------------------------------------------------------------------- 237 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhhcccccCCCcccCccchhhhhccCCChhhhhhhhhhhhhhhhhhhhc--cCCeEEEEecCCCCCCCc
Q psy6770 161 ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLN--IGNLQVIMATNRADTLDP 238 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~--~~~v~vi~aTn~~~~lD~ 238 (362)
++..|++... ..+++||++||.++.||+
T Consensus 238 --------------------------------------------------ll~~l~~~~~~~~~~v~vI~atn~~~~l~~ 267 (389)
T 3vfd_A 238 --------------------------------------------------FLIEFDGVQSAGDDRVLVMGATNRPQELDE 267 (389)
T ss_dssp --------------------------------------------------HHHHHHHHC-----CEEEEEEESCGGGCCH
T ss_pred --------------------------------------------------HHHHhhcccccCCCCEEEEEecCCchhcCH
Confidence 2222333222 356899999999999999
Q ss_pred cccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh---------
Q psy6770 239 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVRE--------- 308 (362)
Q Consensus 239 a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~--------- 308 (362)
+++| ||+..+++++|+.++|..||+.++.+.... .+.++..|+..+.||+|++|..+|+.|+..++++
T Consensus 268 ~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~ 345 (389)
T 3vfd_A 268 AVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNM 345 (389)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CC
T ss_pred HHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 9999 999999999999999999999999875443 3446888999999999999999999999999987
Q ss_pred ---cCCCCCHHHHHHHHHHHhCchH-HHHHHHHhchHHHhh
Q psy6770 309 ---NRYIVLPKDFEKGYKKCAGMHA-VRENRYIVLPKDFEK 345 (362)
Q Consensus 309 ---~~~~v~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 345 (362)
+...|+.+||..++...+|+.. ...+.|++|.++|+.
T Consensus 346 ~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 346 SASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp SSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred chhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 3457999999999999999765 677999999999875
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.89 E-value=5e-22 Score=183.01 Aligned_cols=177 Identities=38% Similarity=0.629 Sum_probs=154.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+|+++||++++.+++.+++.++...+.|+..+.+..+|+.+....|+++++||+|.+...+..............++++
T Consensus 87 Ttl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 166 (278)
T 1iy2_A 87 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 166 (278)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH
Confidence 57999999999999999999999988899999999999999998889999999999998766432222334456788999
Q ss_pred HHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
+.++++......++++++||.|+.+|++++|+|||+..++++.|+.++|.+||+.+++...+..+.++..++..+.|+++
T Consensus 167 l~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~ 246 (278)
T 1iy2_A 167 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG 246 (278)
T ss_dssp HHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCH
T ss_pred HHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCH
Confidence 99999877677799999999999999999999999999999999999999999999988877788899999999999999
Q ss_pred hhHHHHHHHHHHhhccc
Q psy6770 161 ADINAICQEVIMATNRA 177 (362)
Q Consensus 161 ~di~~l~~~a~~~~~r~ 177 (362)
+||.++|++|...+.+.
T Consensus 247 ~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 247 ADLENLLNEAALLAARE 263 (278)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998877543
No 29
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.87 E-value=1e-23 Score=193.03 Aligned_cols=177 Identities=36% Similarity=0.599 Sum_probs=149.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCC-CCcHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQT-GADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~-~~~~~~~~~l~~ 79 (362)
|+||+++|++++.+++.++++++.+.+.|.+++.++.+|+.+...+|+||||||+|.+..++..... ..+....+.++.
T Consensus 58 T~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ 137 (268)
T 2r62_A 58 TLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQ 137 (268)
T ss_dssp HHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTT
T ss_pred HHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHH
Confidence 5799999999999999999999999999998888999999999999999999999999887632211 111111245677
Q ss_pred HHHhccCCCC-CCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCC
Q psy6770 80 LLNQMDGFDQ-TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 158 (362)
Q Consensus 80 lL~~ld~l~~-~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~ 158 (362)
++..+++... ..++++|+|||.++.+|++++|+|||+..++++.|+.++|.++|+.++.......+.++..++..+.|+
T Consensus 138 ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~ 217 (268)
T 2r62_A 138 LLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGL 217 (268)
T ss_dssp TTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSS
T ss_pred HHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCC
Confidence 8888887643 346999999999999999999999999999999999999999999999988877788899999999999
Q ss_pred cHhhHHHHHHHHHHhhccc
Q psy6770 159 SGADINAICQEVIMATNRA 177 (362)
Q Consensus 159 s~~di~~l~~~a~~~~~r~ 177 (362)
+++||.++|+.|...+.+.
T Consensus 218 ~g~dl~~l~~~a~~~a~~~ 236 (268)
T 2r62_A 218 AGADLANIINEAALLAGRN 236 (268)
T ss_dssp CHHHHHHHHHHHHHTTSSS
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 30
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.87 E-value=3e-22 Score=184.15 Aligned_cols=126 Identities=33% Similarity=0.500 Sum_probs=112.0
Q ss_pred hhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc---CCCCCCCCHHHH
Q psy6770 206 LVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK---MNLSDEVDLEDY 282 (362)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~---~~~~~~~~~~~l 282 (362)
+++++++.+|++......++++++||+|+.||+|++||||||+.|++++|+.++|.+||+.++++ .+...++|++.+
T Consensus 129 ~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~l 208 (274)
T 2x8a_A 129 RVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAI 208 (274)
T ss_dssp THHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHH
T ss_pred HHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHH
Confidence 46788999999998888899999999999999999999999999999999999999999999953 445678999999
Q ss_pred hhCC--CCCCHHHHHHHHHHHHHHHHHhc-----------CCCCCHHHHHHHHHHHhCchHH
Q psy6770 283 VARP--DRISGADINAICQEAGMHAVREN-----------RYIVLPKDFEKGYKKCAGMHAV 331 (362)
Q Consensus 283 a~~~--~g~sgadi~~~~~~a~~~a~~~~-----------~~~v~~~~~~~a~~~~~~~~~~ 331 (362)
|..| +|||||||.++|++|++.|+++. ...|+.+||++|++.++|+...
T Consensus 209 a~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 209 AGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp HTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC--
T ss_pred HHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCCh
Confidence 9975 59999999999999999999752 2369999999999999998643
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.85 E-value=7.9e-22 Score=183.18 Aligned_cols=158 Identities=23% Similarity=0.296 Sum_probs=120.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHH----HHcCCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----KENSPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a----~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|+||++||+++|++|+.++++++.++|.|+++..++.+|+.| +..+||||||||||.+++.+.+... .......+
T Consensus 50 T~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~-~~~~~~~v 128 (293)
T 3t15_A 50 SFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ-YTVNNQMV 128 (293)
T ss_dssp HHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---------------CHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCcc-ccchHHHH
Confidence 579999999999999999999999999999999999999999 5778999999999999986532211 11122355
Q ss_pred HHHHHHhccCC-----------CCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCc
Q psy6770 77 LLELLNQMDGF-----------DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDE 145 (362)
Q Consensus 77 l~~lL~~ld~l-----------~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~ 145 (362)
.+.|++.||+. ....++++|+|||.++.+|++++|||||+..|+ .|+.++|.+|++.++... +
T Consensus 129 ~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~----~ 202 (293)
T 3t15_A 129 NATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTD----N 202 (293)
T ss_dssp HHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG----C
T ss_pred HHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC----C
Confidence 56777776633 245689999999999999999999999999997 479999999999888743 4
Q ss_pred CCHHHHHhcCCCCcHhhHHH
Q psy6770 146 VDLEDYVARPDRISGADINA 165 (362)
Q Consensus 146 ~dl~~la~~t~g~s~~di~~ 165 (362)
++.+.++..+.||++++|..
T Consensus 203 ~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 203 VPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CCHHHHHHHHHHSCSCCHHH
T ss_pred CCHHHHHHHhCCCCcccHHH
Confidence 67889999999999999874
No 32
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.81 E-value=7.2e-20 Score=179.80 Aligned_cols=124 Identities=33% Similarity=0.487 Sum_probs=116.2
Q ss_pred hhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh
Q psy6770 205 RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVA 284 (362)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~ 284 (362)
..++++++.+|+++....+++||++||+|+.||++++||||||+.|++++|+.++|.+|++.++++.++.+++++..+++
T Consensus 136 ~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~ 215 (476)
T 2ce7_A 136 EQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAK 215 (476)
T ss_dssp HHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 45789999999998888899999999999999999999999999999999999999999999999988888899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
.|+||||+||+++|++|++.|.+.+...|+.+||..|+.++.+.
T Consensus 216 ~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 216 RTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 99999999999999999999999888899999999999998653
No 33
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.78 E-value=2.7e-19 Score=176.73 Aligned_cols=124 Identities=31% Similarity=0.477 Sum_probs=116.8
Q ss_pred hhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh
Q psy6770 205 RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVA 284 (362)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~ 284 (362)
...+++++.+|++......++++++||+|+.||++++||||||+.|+|++|+.++|.+||+.++++.++.+++++..++.
T Consensus 151 ~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~ 230 (499)
T 2dhr_A 151 EQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 230 (499)
T ss_dssp HHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHT
T ss_pred HHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 35689999999999887889999999999999999999999999999999999999999999999888888999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
.++||+|+||+++|++|++.|.+++...|+.+||..+++++.+.
T Consensus 231 ~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 231 RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 99999999999999999999999888899999999999998764
No 34
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.8e-19 Score=172.00 Aligned_cols=103 Identities=68% Similarity=1.006 Sum_probs=97.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEcc-CCCHHHHHHHHHHHHccCCCCCcCCHHHHHhc
Q psy6770 76 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 154 (362)
Q Consensus 76 ~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~-~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~ 154 (362)
++++||++||++....+|+||+|||+|+.||||++||||||..|+|| +|+.++|..||+.++++.++..++|++.+|..
T Consensus 295 ~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~ 374 (428)
T 4b4t_K 295 ILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIR 374 (428)
T ss_dssp HHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHH
Confidence 37889999999988899999999999999999999999999999996 89999999999999999998889999999999
Q ss_pred CCCCcHhhHHHHHHHHHHhhcccc
Q psy6770 155 PDRISGADINAICQEVIMATNRAD 178 (362)
Q Consensus 155 t~g~s~~di~~l~~~a~~~~~r~~ 178 (362)
|.||||+||.++|++|.+.+.+.+
T Consensus 375 t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 375 NDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999988764
No 35
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=4.9e-18 Score=154.26 Aligned_cols=123 Identities=33% Similarity=0.482 Sum_probs=115.8
Q ss_pred hhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh
Q psy6770 205 RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVA 284 (362)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~ 284 (362)
...+++++..|+++....+++||++||.|+.+|++++|||||++.+++++|+.++|.+|++.++++.++.+++++..++.
T Consensus 132 ~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~ 211 (257)
T 1lv7_A 132 EQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIAR 211 (257)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 35788999999998888899999999999999999999999999999999999999999999999988888899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
.++||||+||.++|++|++.|.+++...|+.+|+..|++.+..
T Consensus 212 ~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 212 GTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 9999999999999999999999998899999999999988754
No 36
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.75 E-value=6.7e-18 Score=153.11 Aligned_cols=118 Identities=33% Similarity=0.496 Sum_probs=110.0
Q ss_pred hhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh
Q psy6770 205 RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVA 284 (362)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~ 284 (362)
...+++++.+|++......++++++||.|+.||++++|+||||+.+++++|+.++|.+||+.++++.++..++++..++.
T Consensus 136 ~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~ 215 (254)
T 1ixz_A 136 EQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 215 (254)
T ss_dssp HHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHH
Confidence 34678889999988877779999999999999999999999999999999999999999999999888888899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
.++||+|+||+++|++|+..|.+++...|+.+|+++++
T Consensus 216 ~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 216 RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 99999999999999999999999888899999999875
No 37
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.1e-18 Score=165.23 Aligned_cols=100 Identities=55% Similarity=0.851 Sum_probs=94.6
Q ss_pred HHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCC
Q psy6770 79 ELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 158 (362)
Q Consensus 79 ~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~ 158 (362)
+||++||++....+|+||+|||+|+.||||++||||||..|+|++|+.++|.+||+.++++.++..++|++.+|..|.||
T Consensus 308 ~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~Gf 387 (437)
T 4b4t_I 308 ELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDL 387 (437)
T ss_dssp HHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSC
T ss_pred HHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence 56777888888889999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred cHhhHHHHHHHHHHhhcccc
Q psy6770 159 SGADINAICQEVIMATNRAD 178 (362)
Q Consensus 159 s~~di~~l~~~a~~~~~r~~ 178 (362)
||+||.++|++|.+.+.+..
T Consensus 388 SGADI~~l~~eA~~~Air~~ 407 (437)
T 4b4t_I 388 SGADIQAMCTEAGLLALRER 407 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999988764
No 38
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.1e-18 Score=162.74 Aligned_cols=100 Identities=48% Similarity=0.793 Sum_probs=95.5
Q ss_pred HHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCC
Q psy6770 79 ELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 158 (362)
Q Consensus 79 ~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~ 158 (362)
+||++||++....+|+||+|||+|+.||||++||||||..|+|++|+.++|.+||+.++++.++..++|+..+|..|.||
T Consensus 274 ~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~ 353 (405)
T 4b4t_J 274 ELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGC 353 (405)
T ss_dssp HHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSC
T ss_pred HHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCC
Confidence 57888899988899999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred cHhhHHHHHHHHHHhhcccc
Q psy6770 159 SGADINAICQEVIMATNRAD 178 (362)
Q Consensus 159 s~~di~~l~~~a~~~~~r~~ 178 (362)
||+||.++|++|.+.+.+..
T Consensus 354 SGADi~~l~~eA~~~Air~~ 373 (405)
T 4b4t_J 354 SGADVKGVCTEAGMYALRER 373 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999988764
No 39
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.2e-18 Score=163.83 Aligned_cols=100 Identities=52% Similarity=0.759 Sum_probs=94.2
Q ss_pred HHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCC
Q psy6770 79 ELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 158 (362)
Q Consensus 79 ~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~ 158 (362)
+||++||++....+|+||+|||+|+.||||++||||||..|+||+|+.++|.+||+.++++.+...++|+..+|..|.||
T Consensus 307 ~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~ 386 (437)
T 4b4t_L 307 ELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGF 386 (437)
T ss_dssp HHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSC
T ss_pred HHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCC
Confidence 36777888888889999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cHhhHHHHHHHHHHhhcccc
Q psy6770 159 SGADINAICQEVIMATNRAD 178 (362)
Q Consensus 159 s~~di~~l~~~a~~~~~r~~ 178 (362)
||+||.++|++|.+.+.+..
T Consensus 387 sGADi~~l~~eA~~~air~~ 406 (437)
T 4b4t_L 387 NGADIRNCATEAGFFAIRDD 406 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999988764
No 40
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.6e-18 Score=163.80 Aligned_cols=99 Identities=42% Similarity=0.696 Sum_probs=93.3
Q ss_pred HHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCc
Q psy6770 80 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRIS 159 (362)
Q Consensus 80 lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s 159 (362)
+|++||++....+|+||+|||+|+.||+|++||||||..|+|++|+.++|.+||+.++++.++..++|++.+|..|.|||
T Consensus 336 lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfS 415 (467)
T 4b4t_H 336 LITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNST 415 (467)
T ss_dssp HHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCC
T ss_pred HHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCC
Confidence 56677888788899999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HhhHHHHHHHHHHhhcccc
Q psy6770 160 GADINAICQEVIMATNRAD 178 (362)
Q Consensus 160 ~~di~~l~~~a~~~~~r~~ 178 (362)
|+||.++|++|.+.+.+..
T Consensus 416 GADI~~l~~eAa~~Air~~ 434 (467)
T 4b4t_H 416 GAELRSVCTEAGMFAIRAR 434 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9999999999999888764
No 41
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-17 Score=160.33 Aligned_cols=100 Identities=45% Similarity=0.735 Sum_probs=94.9
Q ss_pred HHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCC
Q psy6770 79 ELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRI 158 (362)
Q Consensus 79 ~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~ 158 (362)
+||++||++....+|+||+|||+|+.||||++||||||..|+|++|+.++|.+||+.++++.++..++|+..+|..|.||
T Consensus 307 ~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~ 386 (434)
T 4b4t_M 307 ELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF 386 (434)
T ss_dssp HHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSC
T ss_pred HHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence 57788899888889999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred cHhhHHHHHHHHHHhhcccc
Q psy6770 159 SGADINAICQEVIMATNRAD 178 (362)
Q Consensus 159 s~~di~~l~~~a~~~~~r~~ 178 (362)
||+||.++|++|.+.+.+..
T Consensus 387 sGADi~~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 387 NGAQLKAVTVEAGMIALRNG 406 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999987764
No 42
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.71 E-value=5.1e-17 Score=149.40 Aligned_cols=118 Identities=33% Similarity=0.496 Sum_probs=109.4
Q ss_pred hhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh
Q psy6770 205 RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVA 284 (362)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~ 284 (362)
...+++++.+|++......++++++||.|+.||++++|+|||++.+++++|+.++|.+||+.++++.++..++++..++.
T Consensus 160 ~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~ 239 (278)
T 1iy2_A 160 EQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 239 (278)
T ss_dssp HHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHH
Confidence 34678888899888776779999999999999999999999999999999999999999999999888888899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
.++|++|+||+++|++|+..|.+++...|+.+|+.+|+
T Consensus 240 ~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 240 RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 99999999999999999999999888899999999875
No 43
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=4.3e-17 Score=150.08 Aligned_cols=140 Identities=38% Similarity=0.553 Sum_probs=115.7
Q ss_pred hhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh
Q psy6770 205 RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVA 284 (362)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~ 284 (362)
...+..++..++++....+++||+|||.++.+|++++|||||+..++++.|+.++|.+||+.++++.....++++..++.
T Consensus 138 ~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~ 217 (285)
T 3h4m_A 138 QRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAK 217 (285)
T ss_dssp HHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHH
Confidence 34567788888888888899999999999999999999999999999999999999999999999888888889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCch---HHHHHHHHhchHHHh
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMH---AVRENRYIVLPKDFE 344 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~ 344 (362)
.+.|++|+||.++|++|.+.|+.++...|+.+|+.+|+..+.+.. .....+|-+|...|.
T Consensus 218 ~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (285)
T 3h4m_A 218 MTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEH 280 (285)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHCCC---------------
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhc
Confidence 999999999999999999999999999999999999999876532 234566666655554
No 44
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.69 E-value=7.1e-17 Score=119.41 Aligned_cols=76 Identities=32% Similarity=0.490 Sum_probs=72.1
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 253 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 253 ~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
|+|+.++|.+||+.|++++++..++|++.||+.|+|||||||+++|++|++.|++++...|+.+||+.|++++...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999988899999999999999999999999999999999999999999999999987654
No 45
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=121.86 Aligned_cols=78 Identities=29% Similarity=0.450 Sum_probs=74.1
Q ss_pred EecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 251 EFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 251 ~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
+-.+|+.++|.+||+.+++++++.+++|++.||+.|+|||||||+++|++|++.|++++...|+.+||+.|+++++|.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 356899999999999999999988899999999999999999999999999999999998999999999999999875
No 46
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.69 E-value=1.5e-16 Score=157.31 Aligned_cols=129 Identities=30% Similarity=0.476 Sum_probs=118.8
Q ss_pred hhhhhhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHH
Q psy6770 202 RQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281 (362)
Q Consensus 202 ~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~ 281 (362)
.....+.++++..|++.....+++||+|||+|+.||+++.|+|||+..+++++|+.++|.+||+.+++.+++..++++..
T Consensus 319 ~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~ 398 (489)
T 3hu3_A 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQ 398 (489)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHH
T ss_pred hHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHH
Confidence 34456889999999999888899999999999999999999999999999999999999999999999998888899999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCC-----------------CCCHHHHHHHHHHHhCchH
Q psy6770 282 YVARPDRISGADINAICQEAGMHAVRENRY-----------------IVLPKDFEKGYKKCAGMHA 330 (362)
Q Consensus 282 la~~~~g~sgadi~~~~~~a~~~a~~~~~~-----------------~v~~~~~~~a~~~~~~~~~ 330 (362)
++..+.||||+||.++|++|++.|+++... .|+.+||..|++.+.|+..
T Consensus 399 la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 999999999999999999999999987532 4899999999999999753
No 47
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.68 E-value=1e-16 Score=121.28 Aligned_cols=84 Identities=25% Similarity=0.381 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCchH--HHH
Q psy6770 256 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHA--VRE 333 (362)
Q Consensus 256 ~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~~--~~~ 333 (362)
|.++|.+||+.+++++++.+++|++.||+.|+|||||||.++|++|++.|++++...|+.+||+.|++++.++.. ...
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~ 81 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSST 81 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccch
Confidence 567999999999999999999999999999999999999999999999999999999999999999999998753 345
Q ss_pred HHHHhc
Q psy6770 334 NRYIVL 339 (362)
Q Consensus 334 ~~~~~~ 339 (362)
..|.+|
T Consensus 82 ~~y~~w 87 (88)
T 3vlf_B 82 SRYMQY 87 (88)
T ss_dssp ------
T ss_pred hHHhcc
Confidence 666666
No 48
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.67 E-value=1.9e-16 Score=153.62 Aligned_cols=242 Identities=15% Similarity=0.138 Sum_probs=97.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhh-hhcCc-hHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQ-KYLGE-GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILL 78 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~-~~~ge-se~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~ 78 (362)
|++|+++|++++++|+.++++.+.+ +|+|+ +++.++.+|+.|.... ++||+|.+.... . .....++++
T Consensus 64 T~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~----~~De~d~~~~~~---~---~~~e~rvl~ 133 (444)
T 1g41_A 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV----RQQEIAKNRARA---E---DVAEERILD 133 (444)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH----HHHHHHSCC-------------------
T ss_pred HHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc----hhhhhhhhhccc---h---hhHHHHHHH
Confidence 5799999999999999999999998 59995 8999999999998764 489988775332 1 122358999
Q ss_pred HHHHhccCCCCCCCeEEEEE-cCCCCCCCccccCCCcceeEEEccCCCHH-HHHHHHHHHHccCCCCCcCCHHHHHhcC-
Q psy6770 79 ELLNQMDGFDQTTNVKVIMA-TNRADTLDPALLRPGRLDRKIEFPLPDRR-QKRLVFSTITAKMNLSDEVDLEDYVARP- 155 (362)
Q Consensus 79 ~lL~~ld~l~~~~~v~vi~t-Tn~~~~ld~al~r~gRf~~~i~i~~P~~~-~r~~il~~~~~~~~~~~~~dl~~la~~t- 155 (362)
+||.+||++.....+ +++ ||+|+.+|++++||||||..|++++|+.. .|.+|+.. .+.. .-+.++..+....
T Consensus 134 ~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~--~g~~-~~~~~~~~~~~~~~ 208 (444)
T 1g41_A 134 ALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP--PGME-EMTNQLQSLFQNLG 208 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC--CChH-HHHHHHHHHHHhhc
Confidence 999999998665554 555 99999999999999999999999999987 77777632 1000 0001111111100
Q ss_pred ---------------------CCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhccC--CChhhhhhhhhhhhh
Q psy6770 156 ---------------------DRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFP--LPDRRQKRLVFSTIT 212 (362)
Q Consensus 156 ---------------------~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~--~~~~~~k~~~~~~~l 212 (362)
..=..-|...+.++|+..+-+...+ ..+.+++...-. .....+..-|-..||
T Consensus 209 ~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il-----~~DEidki~~~~~~~~~D~s~egvq~aLL 283 (444)
T 1g41_A 209 SDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV-----FIDEIDKICKKGEYSGADVSREGVQRDLL 283 (444)
T ss_dssp -----------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE-----EEETGGGGSCCSSCSSSHHHHHHHHHHHH
T ss_pred CCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee-----eHHHHHHHhhccCCCCCCchHHHHHHHHH
Confidence 0000112334444444433111110 011111110000 011112222445677
Q ss_pred hhhhhh--------hccCCeEEEEec----CCCCCCCccccCCCCcceeEEecCCCHHHHHHHH
Q psy6770 213 AKMNFM--------LNIGNLQVIMAT----NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 264 (362)
Q Consensus 213 ~~~~~~--------~~~~~v~vi~aT----n~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~ 264 (362)
.-|++. -..++|++|++. +.|..+-|.++- ||+.+|.++-.+.++..+|+
T Consensus 284 ~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il 345 (444)
T 1g41_A 284 PLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERIL 345 (444)
T ss_dssp HHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHH
T ss_pred HHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHH
Confidence 777763 245789999886 234445577766 99999999999999998888
No 49
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.67 E-value=6e-17 Score=147.01 Aligned_cols=124 Identities=32% Similarity=0.481 Sum_probs=104.6
Q ss_pred hhhhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCC--CHHHHh
Q psy6770 206 LVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEV--DLEDYV 283 (362)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~--~~~~la 283 (362)
..++.++..+++.....++++|++||.++.||++++|||||+..+++++|+.++|.+||+.++.+.+...+. .+..++
T Consensus 128 ~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~ 207 (262)
T 2qz4_A 128 QTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLA 207 (262)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Confidence 457788888888777788999999999999999999999999999999999999999999999887765433 347899
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCch
Q psy6770 284 ARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMH 329 (362)
Q Consensus 284 ~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~ 329 (362)
..+.||||+||.++|++|++.|++++...|+.+||..|++++.++.
T Consensus 208 ~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 208 ELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp HTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccCh
Confidence 9999999999999999999999998889999999999999988764
No 50
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.66 E-value=1.6e-16 Score=119.02 Aligned_cols=81 Identities=74% Similarity=1.096 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCchHHHHHH
Q psy6770 256 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVRENR 335 (362)
Q Consensus 256 ~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~~~~~~~ 335 (362)
|.++|.+||+.+++++++.+++|++.||+.|+|||||||+++|++|++.|++++..+|+.+||..|+++++|+...+.+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~~~l~~ 81 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEF 81 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCchHHHHh
Confidence 67899999999999999888999999999999999999999999999999999989999999999999999987643344
Q ss_pred H
Q psy6770 336 Y 336 (362)
Q Consensus 336 ~ 336 (362)
|
T Consensus 82 y 82 (83)
T 3aji_B 82 Y 82 (83)
T ss_dssp -
T ss_pred c
Confidence 4
No 51
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.65 E-value=4.4e-17 Score=148.77 Aligned_cols=124 Identities=27% Similarity=0.407 Sum_probs=112.9
Q ss_pred hhhhhhhhhhhhhhc-cCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh
Q psy6770 206 LVFSTITAKMNFMLN-IGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVA 284 (362)
Q Consensus 206 ~~~~~~l~~~~~~~~-~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~ 284 (362)
.++++++..|+++.. ..+++||++||.++.||++++|+|||+..+++++|+.++|.++|+.+++++++..+++++.+++
T Consensus 133 ~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~ 212 (268)
T 2r62_A 133 QTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAK 212 (268)
T ss_dssp SSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTS
T ss_pred HHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHH
Confidence 356788888887754 3459999999999999999999999999999999999999999999999888878889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCch
Q psy6770 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMH 329 (362)
Q Consensus 285 ~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~ 329 (362)
.+.||+|+||.++|++|++.|..++...|+.+|+..++....|..
T Consensus 213 ~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 213 LTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp SSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcc
Confidence 999999999999999999999888888999999999999888874
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.65 E-value=2.6e-16 Score=164.19 Aligned_cols=160 Identities=17% Similarity=0.228 Sum_probs=110.9
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhh--hhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~--~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|.+|+++|..+ ++.++.++.+.+. .++.|+.++.++.+|+.+....++||||||+|.+++.+....
T Consensus 221 T~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~-- 298 (758)
T 1r6b_X 221 TAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-- 298 (758)
T ss_dssp HHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS--
T ss_pred HHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc--
Confidence 46899999887 7889999988887 468899999999999999888899999999999987653211
Q ss_pred CcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCC-----CCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccC---
Q psy6770 69 ADREVQRILLELLNQMDGFDQTTNVKVIMATNRA-----DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM--- 140 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~-----~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~--- 140 (362)
... ... .+| ..+-..+.+.+|++||.+ ..+|+++.| ||. .+.++.|+.+++.++++.+...+
T Consensus 299 ~~~---~~~-~~L---~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~ 368 (758)
T 1r6b_X 299 GQV---DAA-NLI---KPLLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAH 368 (758)
T ss_dssp CHH---HHH-HHH---SSCSSSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chH---HHH-HHH---HHHHhCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 111 122 222 222245678899999864 367899999 998 69999999999999998877542
Q ss_pred -CCC-CcCCHHHHHhc-----CCCCcHhhHHHHHHHHHH
Q psy6770 141 -NLS-DEVDLEDYVAR-----PDRISGADINAICQEVIM 172 (362)
Q Consensus 141 -~~~-~~~dl~~la~~-----t~g~s~~di~~l~~~a~~ 172 (362)
.+. .+..+..++.. +..+.+..+..++.+|..
T Consensus 369 ~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~ 407 (758)
T 1r6b_X 369 HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_dssp HTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHH
Confidence 111 11123334333 334555666666666543
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.58 E-value=1.4e-14 Score=151.04 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=81.7
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCc
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGAD 70 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~ 70 (362)
|++|+++|..+ +++++.+++ ..+|.|+.+..++.+|+.+....|+||||| . ..
T Consensus 215 T~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~--------~~- 277 (758)
T 3pxi_A 215 TAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A--------AI- 277 (758)
T ss_dssp HHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------
T ss_pred HHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C--------ch-
Confidence 47899999997 899999988 567889999999999999999999999999 0 00
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccC
Q psy6770 71 REVQRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 140 (362)
Q Consensus 71 ~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~ 140 (362)
...+.++..| ..+.+.+|++||... .+|++++| || ..|.|+.|+.+++..|++.+...+
T Consensus 278 ----~~~~~L~~~l----~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~ 341 (758)
T 3pxi_A 278 ----DASNILKPSL----ARGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRY 341 (758)
T ss_dssp ----------CCCT----TSSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTS
T ss_pred ----hHHHHHHHHH----hcCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1122232222 356799999999988 79999999 99 569999999999999999877664
No 54
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.53 E-value=4.2e-15 Score=110.84 Aligned_cols=70 Identities=47% Similarity=0.773 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 258 RQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 258 ~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
++|.+||+.+++++++.+++|++.||+.|+|||||||.++|++|++.|++++...|+.+||..|+.++..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~ 70 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVK 70 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHc
Confidence 4799999999999988889999999999999999999999999999999999999999999999999853
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.51 E-value=6.6e-14 Score=130.13 Aligned_cols=103 Identities=40% Similarity=0.657 Sum_probs=95.2
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhc
Q psy6770 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 154 (362)
Q Consensus 75 ~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~ 154 (362)
++++++|..|+++....+++||+|||.++.+|++++|||||+..+++++|+.++|.+|++.+++..+...++++..++..
T Consensus 137 ~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~ 216 (301)
T 3cf0_A 137 RVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 216 (301)
T ss_dssp HHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHT
T ss_pred HHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHH
Confidence 56788888899887778899999999999999999999999999999999999999999999998887778899999999
Q ss_pred CCCCcHhhHHHHHHHHHHhhccc
Q psy6770 155 PDRISGADINAICQEVIMATNRA 177 (362)
Q Consensus 155 t~g~s~~di~~l~~~a~~~~~r~ 177 (362)
+.||+|+||.++|++|++.+.+.
T Consensus 217 ~~g~sg~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 217 TNGFSGADLTEICQRACKLAIRE 239 (301)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877654
No 56
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.46 E-value=6.4e-14 Score=147.76 Aligned_cols=126 Identities=18% Similarity=0.281 Sum_probs=84.5
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhh--hhhcCchHHHHHHHHHHHHHc-CCeEEEeccccccccccCCCCC
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKEN-SPAIIFIDEIDAIATKRFDAQT 67 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~--~~~~gese~~l~~~F~~a~~~-~P~II~iDeiD~l~~~r~~~~~ 67 (362)
|.||+++|+++ +.+++.++++.+. .++.|+.+..++.+|+.+... +|+||||||+|.+.+.+...+
T Consensus 205 T~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g- 283 (854)
T 1qvr_A 205 TAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG- 283 (854)
T ss_dssp HHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------
T ss_pred HHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-
Confidence 46899999998 8999999999987 578899999999999999875 789999999999987653211
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHcc
Q psy6770 68 GADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 68 ~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~ 139 (362)
.......+..++. ...+.+|++||.++ .+|+++.| ||+. +.++.|+.+++..|++.++..
T Consensus 284 --~~~~~~~L~~~l~-------~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~ 347 (854)
T 1qvr_A 284 --AVDAGNMLKPALA-------RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEK 347 (854)
T ss_dssp ----------HHHHH-------TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHh-------CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhh
Confidence 1122344555542 35678999998774 58999999 9986 999999999999999877653
No 57
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.41 E-value=3.2e-13 Score=125.45 Aligned_cols=162 Identities=17% Similarity=0.227 Sum_probs=122.2
Q ss_pred CcHHHHHHhhhCC-------cEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHH
Q psy6770 1 YLLCTSFDTELVT-------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREV 73 (362)
Q Consensus 1 slLakaiA~e~~~-------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~ 73 (362)
|+||+++|++++. +++.++++++.+.++|.+...+..+|+.+ .++||||||+|.++..+.+ ....
T Consensus 81 T~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~--- 152 (309)
T 3syl_A 81 TTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYG--- 152 (309)
T ss_dssp HHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCT---
T ss_pred HHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--cccc---
Confidence 4789999999844 99999999999999999999999999887 4699999999999866532 1122
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCC-cCC
Q psy6770 74 QRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSD-EVD 147 (362)
Q Consensus 74 ~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~-~~d 147 (362)
...++.|+..|+. ...++++|++||.++ .++|++++ ||+..++|+.|+.+++..|++.++......- +..
T Consensus 153 ~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 228 (309)
T 3syl_A 153 QEAIEILLQVMEN--NRDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA 228 (309)
T ss_dssp HHHHHHHHHHHHH--CTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH
T ss_pred HHHHHHHHHHHhc--CCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3456666666664 346788899987653 35799999 9999999999999999999999998765431 112
Q ss_pred HHHHHhc-------CCCCcHhhHHHHHHHHHHhh
Q psy6770 148 LEDYVAR-------PDRISGADINAICQEVIMAT 174 (362)
Q Consensus 148 l~~la~~-------t~g~s~~di~~l~~~a~~~~ 174 (362)
+..++.. ...-++.++.+++..++..+
T Consensus 229 ~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~ 262 (309)
T 3syl_A 229 ETALRAYIGLRRNQPHFANARSIRNALDRARLRQ 262 (309)
T ss_dssp HHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 3334433 22234888999998887643
No 58
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.33 E-value=2.4e-12 Score=117.62 Aligned_cols=160 Identities=14% Similarity=0.126 Sum_probs=108.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhh-hhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFV-QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~-~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~ 79 (362)
|+||+++|++++.+|+.+++++.+ +...+.....++.+|+.+....|++|||||+|.+++.+.... ... ..++..
T Consensus 78 T~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~---~~~l~~ 153 (272)
T 1d2n_A 78 TALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFS---NLVLQA 153 (272)
T ss_dssp HHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCC---HHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHH---HHHHHH
Confidence 579999999999999999887532 111122346788999999888899999999999987653222 122 245555
Q ss_pred HHHhccCCC-CCCCeEEEEEcCCCCCCCc-cccCCCcceeEEEccCCCH-HHHHHHHHHHHccCCCCCcCCHHHHHhcCC
Q psy6770 80 LLNQMDGFD-QTTNVKVIMATNRADTLDP-ALLRPGRLDRKIEFPLPDR-RQKRLVFSTITAKMNLSDEVDLEDYVARPD 156 (362)
Q Consensus 80 lL~~ld~l~-~~~~v~vi~tTn~~~~ld~-al~r~gRf~~~i~i~~P~~-~~r~~il~~~~~~~~~~~~~dl~~la~~t~ 156 (362)
++..+++.. ...++++|+|||.++.+++ .+.+ ||...|++|.++. ++...++.. ...+ ++.++..++..+.
T Consensus 154 L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~ 227 (272)
T 1d2n_A 154 LLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVK 227 (272)
T ss_dssp HHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHT
T ss_pred HHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhc
Confidence 556666553 3456889999999998988 5666 9999998876654 444444433 2233 2345778888888
Q ss_pred CC----cHhhHHHHHHHH
Q psy6770 157 RI----SGADINAICQEV 170 (362)
Q Consensus 157 g~----s~~di~~l~~~a 170 (362)
|+ ...++.+++..|
T Consensus 228 g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 228 GKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp TSEEEECHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHH
Confidence 87 344444444443
No 59
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.27 E-value=2.5e-12 Score=128.86 Aligned_cols=181 Identities=18% Similarity=0.213 Sum_probs=111.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhh---------hhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQ---------KYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADR 71 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~---------~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~ 71 (362)
|+||++||+.++.+++.++++.+.. .|.|.....+...|..+....| |+||||+|.+...+..
T Consensus 122 Ttlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~------- 193 (543)
T 3m6a_A 122 TSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG------- 193 (543)
T ss_dssp HHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC------------
T ss_pred HHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------
Confidence 5799999999999999999876543 6778878888888988877776 9999999999865411
Q ss_pred HHHHHHHHHHHhccCCCC-------------CCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHc
Q psy6770 72 EVQRILLELLNQMDGFDQ-------------TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA 138 (362)
Q Consensus 72 ~~~~~l~~lL~~ld~l~~-------------~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~ 138 (362)
.....||..|+.... ..++++|+|||.++.+|+++++ ||+ .|+++.|+.+++..|++.++.
T Consensus 194 ---~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~ 267 (543)
T 3m6a_A 194 ---DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLL 267 (543)
T ss_dssp -------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHH
T ss_pred ---CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHH
Confidence 123445555553211 1578999999999999999999 995 799999999999999988762
Q ss_pred -----cCCCCC------cCCHHHHHhcCCC-CcH----hhHHHHHHHHHHhhcccccCCCcccCccchhhhhcc
Q psy6770 139 -----KMNLSD------EVDLEDYVARPDR-ISG----ADINAICQEVIMATNRADTLDPALLRPGRLDRKIEF 196 (362)
Q Consensus 139 -----~~~~~~------~~dl~~la~~t~g-~s~----~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~ 196 (362)
...... +..+..++....+ ... ..|..+|+.+.....+.. .....+....+...+..
T Consensus 268 ~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~-~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 268 PKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEE-RKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTC-CSCCEECTTTTHHHHCS
T ss_pred HHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcC-CcceecCHHHHHHHhCC
Confidence 222211 1124444443332 223 445566666555444321 12233444555554443
No 60
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.25 E-value=7.1e-12 Score=119.10 Aligned_cols=86 Identities=29% Similarity=0.405 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHH
Q psy6770 90 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQ 168 (362)
Q Consensus 90 ~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~ 168 (362)
..+++||++||.|+.+|++++| ||+..+++++|+.++|..||+.++...+.. .+.++..++..+.||+++||..+|+
T Consensus 185 ~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4679999999999999999999 999999999999999999999999877643 5568999999999999999999999
Q ss_pred HHHHhhccc
Q psy6770 169 EVIMATNRA 177 (362)
Q Consensus 169 ~a~~~~~r~ 177 (362)
+|.+.+.+.
T Consensus 263 ~A~~~a~~~ 271 (355)
T 2qp9_X 263 DALMQPIRK 271 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 61
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.23 E-value=2.6e-11 Score=115.47 Aligned_cols=173 Identities=17% Similarity=0.285 Sum_probs=119.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhh-hcCch-HHHHHHHHHHH----HHcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQK-YLGEG-PRMVRDVFRLA----KENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~-~~ges-e~~l~~~F~~a----~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|++|++||++++.+|+.++++.+... |+|++ +..++.+|+.+ ....|+||||||+|.+.+.+.+...+.+....
T Consensus 65 T~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~ 144 (363)
T 3hws_A 65 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGE 144 (363)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHH
T ss_pred HHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchH
Confidence 57999999999999999999998855 88876 67788888876 44568999999999999887655444444444
Q ss_pred HHHHHHHHhccCC-------------------CCCCCeEEEEEcCCC----------CC---------------------
Q psy6770 75 RILLELLNQMDGF-------------------DQTTNVKVIMATNRA----------DT--------------------- 104 (362)
Q Consensus 75 ~~l~~lL~~ld~l-------------------~~~~~v~vi~tTn~~----------~~--------------------- 104 (362)
.+.+.||..|++. -...++++|+++|.. ..
T Consensus 145 ~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~ 224 (363)
T 3hws_A 145 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGE 224 (363)
T ss_dssp HHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHH
T ss_pred HHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHH
Confidence 5778888887742 122345555555532 11
Q ss_pred --------------CCccccCCCcceeEEEccCCCHHHHHHHHHH----HHc-------cCCCC---CcCCHHHHHh--c
Q psy6770 105 --------------LDPALLRPGRLDRKIEFPLPDRRQKRLVFST----ITA-------KMNLS---DEVDLEDYVA--R 154 (362)
Q Consensus 105 --------------ld~al~r~gRf~~~i~i~~P~~~~r~~il~~----~~~-------~~~~~---~~~dl~~la~--~ 154 (362)
++|++.. ||+..+.+++|+.+++.+|+.. ++. ..... ++..++.++. .
T Consensus 225 l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~ 302 (363)
T 3hws_A 225 LLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAM 302 (363)
T ss_dssp HHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhc
Confidence 6788887 9999999999999999999875 222 11211 1112444553 2
Q ss_pred CCCCcHhhHHHHHHHHHHhhc
Q psy6770 155 PDRISGADINAICQEVIMATN 175 (362)
Q Consensus 155 t~g~s~~di~~l~~~a~~~~~ 175 (362)
...+...+|++++..++..+.
T Consensus 303 ~~~~gaR~L~~~ie~~~~~~l 323 (363)
T 3hws_A 303 ARKTGARGLRSIVEAALLDTM 323 (363)
T ss_dssp HTTCTTTTHHHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHHHHH
Confidence 344556788888888776543
No 62
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.16 E-value=2.3e-11 Score=113.97 Aligned_cols=87 Identities=29% Similarity=0.407 Sum_probs=78.9
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHH
Q psy6770 89 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAIC 167 (362)
Q Consensus 89 ~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~ 167 (362)
...+++||+|||.|+.+|++++| ||+..+++++|+.++|.+|++.++...... .+.++..++..+.||+++||..+|
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45689999999999999999999 999999999999999999999999877644 556899999999999999999999
Q ss_pred HHHHHhhccc
Q psy6770 168 QEVIMATNRA 177 (362)
Q Consensus 168 ~~a~~~~~r~ 177 (362)
++|.+.+.+.
T Consensus 229 ~~a~~~a~r~ 238 (322)
T 3eie_A 229 KDALMQPIRK 238 (322)
T ss_dssp HHHTTHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 63
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.16 E-value=1.3e-11 Score=114.05 Aligned_cols=168 Identities=18% Similarity=0.135 Sum_probs=104.0
Q ss_pred EEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhccC
Q psy6770 119 IEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFP 197 (362)
Q Consensus 119 i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~ 197 (362)
+-.++|. ..+..+.+...+..+.. -.++...+.....|-+...+..++..|..... ...+..+-...++......
T Consensus 40 Ll~GppG-tGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~---~~~~~vl~iDEiD~~~~~~ 115 (293)
T 3t15_A 40 GIWGGKG-QGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR---KGNMCCLFINDLDAGAGRM 115 (293)
T ss_dssp EEEECTT-SCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT---TSSCCCEEEECCC------
T ss_pred EEECCCC-CCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh---cCCCeEEEEechhhhcCCC
Confidence 3446554 23333444433333222 12355566666666677777777777653322 2224444444433322110
Q ss_pred --CCh-hhhhhhhhhhhhhhhhhhh-----------ccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHH
Q psy6770 198 --LPD-RRQKRLVFSTITAKMNFML-----------NIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263 (362)
Q Consensus 198 --~~~-~~~k~~~~~~~l~~~~~~~-----------~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i 263 (362)
.+. ......+.+.++..||+.. ...+++||+|||+++.||+|++||||||..|+ +|+.++|.+|
T Consensus 116 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~I 193 (293)
T 3t15_A 116 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV 193 (293)
T ss_dssp --------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHH
Confidence 011 1123456788888887432 45689999999999999999999999999997 5899999999
Q ss_pred HHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHH
Q psy6770 264 FSTITAKMNLSDEVDLEDYVARPDRISGADINA 296 (362)
Q Consensus 264 ~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~ 296 (362)
++.++.. .+++++.+++.++||+|+||..
T Consensus 194 l~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 194 CTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 9998874 3677999999999999999874
No 64
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.14 E-value=1.2e-10 Score=107.73 Aligned_cols=168 Identities=21% Similarity=0.348 Sum_probs=114.4
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhh-hhcCc-hHHHHHHHHHHH-----HHcCCeEEEeccccccccccCCCCCCCcHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQ-KYLGE-GPRMVRDVFRLA-----KENSPAIIFIDEIDAIATKRFDAQTGADREV 73 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~-~~~ge-se~~l~~~F~~a-----~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~ 73 (362)
|++|+++|++++.+++.++++.+.+ .|.|. ....++.+|..+ ....++||||||+|.+.+..... ..+...
T Consensus 64 T~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~ 141 (310)
T 1ofh_A 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSR 141 (310)
T ss_dssp HHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHH
T ss_pred HHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhH
Confidence 4799999999999999999998876 56664 345677777643 12347999999999998765322 222222
Q ss_pred HHHHHHHHHhccCCC--------CCCCeEEEEE----cCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHH----HH
Q psy6770 74 QRILLELLNQMDGFD--------QTTNVKVIMA----TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST----IT 137 (362)
Q Consensus 74 ~~~l~~lL~~ld~l~--------~~~~v~vi~t----Tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~----~~ 137 (362)
..+.+.|+..+++.. ...++++|++ ++.+..+++++.+ ||+..++|+.|+.+++..|++. +.
T Consensus 142 ~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~ 219 (310)
T 1ofh_A 142 EGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLT 219 (310)
T ss_dssp HHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHH
T ss_pred HHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHH
Confidence 334566666666531 2346888888 5678899999998 9999999999999999999983 11
Q ss_pred -------ccCCCC---CcCCHHHHHhcC-------CCCcHhhHHHHHHHHHH
Q psy6770 138 -------AKMNLS---DEVDLEDYVARP-------DRISGADINAICQEVIM 172 (362)
Q Consensus 138 -------~~~~~~---~~~dl~~la~~t-------~g~s~~di~~l~~~a~~ 172 (362)
...... ++..+..++..+ .+....++.+++..++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~ 271 (310)
T 1ofh_A 220 EQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 271 (310)
T ss_dssp HHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHH
Confidence 111211 111244444443 24567777777777653
No 65
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.07 E-value=4.1e-10 Score=106.95 Aligned_cols=158 Identities=13% Similarity=0.151 Sum_probs=111.6
Q ss_pred CcHHHHHHhhhCC--cEEEEechhhhhhhcCc------------------------------------------------
Q psy6770 1 YLLCTSFDTELVT--AFIRVVGSEFVQKYLGE------------------------------------------------ 30 (362)
Q Consensus 1 slLakaiA~e~~~--~~~~v~~s~l~~~~~ge------------------------------------------------ 30 (362)
|+||+++|++++. +++.+++..+...+.+.
T Consensus 84 T~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g 163 (368)
T 3uk6_A 84 TAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTG 163 (368)
T ss_dssp HHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-----
T ss_pred HHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCccc
Confidence 5799999999986 89999987755444333
Q ss_pred -hHHHHHHHHHHHHHc---------CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEc-
Q psy6770 31 -GPRMVRDVFRLAKEN---------SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMAT- 99 (362)
Q Consensus 31 -se~~l~~~F~~a~~~---------~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tT- 99 (362)
....++..|..+... .|+||||||+|.+.. ...+.|+..++. ...+++++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~--------------~~~~~L~~~le~--~~~~~~ii~t~~ 227 (368)
T 3uk6_A 164 EIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI--------------ESFSFLNRALES--DMAPVLIMATNR 227 (368)
T ss_dssp --CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH--------------HHHHHHHHHTTC--TTCCEEEEEESC
T ss_pred ccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh--------------HHHHHHHHHhhC--cCCCeeeeeccc
Confidence 234455555544331 278999999998742 334455555553 23345555554
Q ss_pred ----------CCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHH
Q psy6770 100 ----------NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQ 168 (362)
Q Consensus 100 ----------n~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~ 168 (362)
|.++.+++++++ ||.. +.+++|+.+++..+++..+...... ++..+..++..+.+-+++++.++|.
T Consensus 228 ~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 228 GITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp SEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 358899999999 9977 7999999999999999888765433 2224667777777678999999999
Q ss_pred HHHHhhccc
Q psy6770 169 EVIMATNRA 177 (362)
Q Consensus 169 ~a~~~~~r~ 177 (362)
.|...+...
T Consensus 305 ~a~~~A~~~ 313 (368)
T 3uk6_A 305 AASLVCRKR 313 (368)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 998876443
No 66
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.03 E-value=2.4e-10 Score=97.32 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=89.5
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhh--hhhcCchHHHHHHHHHHHHH-cCCeEEEeccccccccccCCCCC
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKE-NSPAIIFIDEIDAIATKRFDAQT 67 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~--~~~~gese~~l~~~F~~a~~-~~P~II~iDeiD~l~~~r~~~~~ 67 (362)
|.|++++++++ +.+++.++++.+. ..+.|+....++.+++.+.. ..|+||+|||+|.+...+.....
T Consensus 57 T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~ 136 (195)
T 1jbk_A 57 TAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA 136 (195)
T ss_dssp HHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C
T ss_pred HHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch
Confidence 46899999986 8999999998887 45667778888899887654 55899999999999866422111
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHH
Q psy6770 68 GADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVF 133 (362)
Q Consensus 68 ~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il 133 (362)
......+..++. ..++.+|++||.++ .+++++.+ ||. .++++.|+.+++.+++
T Consensus 137 ---~~~~~~l~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 137 ---MDAGNMLKPALA-------RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ---CCCHHHHHHHHH-------TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ---HHHHHHHHHhhc-------cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 112344444442 34677889888876 78999999 998 6999999999998775
No 67
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.01 E-value=2.5e-09 Score=100.41 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=107.1
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+||+++|++++.+|+.++++.+. ....+..++.. ...+++|||||+|.+... ....+...
T Consensus 69 T~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~-----------~~~~Ll~~ 129 (338)
T 3pfi_A 69 TTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLSPA-----------IEEVLYPA 129 (338)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCCHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcCHH-----------HHHHHHHH
Confidence 479999999999999999997663 22333344332 245799999999988421 22333334
Q ss_pred HHhccC------------C-CCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcC
Q psy6770 81 LNQMDG------------F-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEV 146 (362)
Q Consensus 81 L~~ld~------------l-~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~ 146 (362)
+..-.- . ...+++.+|++||.+..+++++++ ||+..++++.|+.+++..+++..+...... ++.
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~ 207 (338)
T 3pfi_A 130 MEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEK 207 (338)
T ss_dssp HHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHH
T ss_pred HHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHH
Confidence 432210 0 011258999999999999999999 999999999999999999999988876543 222
Q ss_pred CHHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 147 DLEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 147 dl~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
.+..++..+.| .+.++.+++..+...+
T Consensus 208 ~~~~l~~~~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 208 AALEIAKRSRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp HHHHHHHTTTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 45667775554 5577778877765443
No 68
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.95 E-value=3.7e-09 Score=98.43 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=106.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHH--cCCeEEEeccccccccccCCCCCCCcHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE--NSPAIIFIDEIDAIATKRFDAQTGADREVQRILL 78 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~--~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~ 78 (362)
|+||++++++++.+++.++++.+.. ... ++..... ..+++|||||+|.+... ....+.
T Consensus 52 T~la~~i~~~~~~~~~~~~~~~~~~------~~~---l~~~l~~~~~~~~~l~lDEi~~l~~~-----------~~~~L~ 111 (324)
T 1hqc_A 52 TTLAHVIAHELGVNLRVTSGPAIEK------PGD---LAAILANSLEEGDILFIDEIHRLSRQ-----------AEEHLY 111 (324)
T ss_dssp HHHHHHHHHHHTCCEEEECTTTCCS------HHH---HHHHHTTTCCTTCEEEETTTTSCCHH-----------HHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeccccCC------hHH---HHHHHHHhccCCCEEEEECCcccccc-----------hHHHHH
Confidence 4799999999999999999876632 222 3333333 45799999999987522 123344
Q ss_pred HHHHhcc-----CCC--------CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-C
Q psy6770 79 ELLNQMD-----GFD--------QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-D 144 (362)
Q Consensus 79 ~lL~~ld-----~l~--------~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~ 144 (362)
.++.... +-. ...++.+|++||.++.+++++.+ ||+..+.++.|+.+++..+++..+...+.. +
T Consensus 112 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~ 189 (324)
T 1hqc_A 112 PAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRIT 189 (324)
T ss_dssp HHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 4444321 000 11368899999999999999998 999999999999999999999988765433 2
Q ss_pred cCCHHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 145 EVDLEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 145 ~~dl~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
+..+..++..+.| .+.++.+++..+...+
T Consensus 190 ~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 190 EEAALEIGRRSRG-TMRVAKRLFRRVRDFA 218 (324)
T ss_dssp HHHHHHHHHHSCS-CHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 2245667777765 4577777777665433
No 69
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.94 E-value=1.4e-09 Score=79.91 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=53.8
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccc
Q psy6770 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178 (362)
Q Consensus 122 ~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~ 178 (362)
|+|+.++|.+||+.++++.++..++|+..++..|.||||+||.++|++|.+.+.+..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999988888999999999999999999999999999988764
No 70
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.92 E-value=2e-09 Score=100.54 Aligned_cols=155 Identities=13% Similarity=0.192 Sum_probs=105.6
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|.|++++++++ +.+++.++++++...+.+.........|.... ..|++|||||+|.+..++ .....+
T Consensus 51 T~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---------~~~~~l 120 (324)
T 1l8q_A 51 THLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---------RTQIEF 120 (324)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH---------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh---------HHHHHH
Confidence 57899999999 99999999998876655443322222333222 247999999999986432 112223
Q ss_pred HHHHHhccCCCCCCCeEEEEEcCCCC---CCCccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHH
Q psy6770 78 LELLNQMDGFDQTTNVKVIMATNRAD---TLDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDY 151 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v~vi~tTn~~~---~ld~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~l 151 (362)
..+++.+. ..+..+++++++.|. .+++++.+ ||. ..+++++ +.+++..+++..+...+.. ++..+..+
T Consensus 121 ~~~l~~~~---~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l 194 (324)
T 1l8q_A 121 FHIFNTLY---LLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYL 194 (324)
T ss_dssp HHHHHHHH---HTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHH---HCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 33333221 234567777777766 68999999 996 7899999 9999999999988765442 22236677
Q ss_pred HhcCCCCcHhhHHHHHHHHHHh
Q psy6770 152 VARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 152 a~~t~g~s~~di~~l~~~a~~~ 173 (362)
+..+ -...++.+++..+...
T Consensus 195 ~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 195 LENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHC--SSHHHHHHHHHHHHHH
T ss_pred HHhC--CCHHHHHHHHHHHHHc
Confidence 7777 4567777777776654
No 71
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.90 E-value=1.6e-09 Score=105.69 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=107.5
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHH
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQR 75 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~ 75 (362)
|.|+++||+++ +.+++.++++.+...+.+.........|.......|.||||||+|.+..++ ....
T Consensus 144 TtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~q~ 214 (440)
T 2z4s_A 144 THLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GVQT 214 (440)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HHHH
Confidence 47899999999 899999999988655443222111122333323368999999999986432 1122
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEcCCCCC---CCccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHH
Q psy6770 76 ILLELLNQMDGFDQTTNVKVIMATNRADT---LDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLE 149 (362)
Q Consensus 76 ~l~~lL~~ld~l~~~~~v~vi~tTn~~~~---ld~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~ 149 (362)
.+..+++.+. ..+..+++++.+.+.. +++.+++ ||. ..+.++.|+.++|..+++..+...++. ++..+.
T Consensus 215 ~l~~~l~~l~---~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~ 289 (440)
T 2z4s_A 215 ELFHTFNELH---DSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLN 289 (440)
T ss_dssp HHHHHHHHHH---TTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHH
T ss_pred HHHHHHHHHH---HCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 2333333222 3345566655555554 8899999 996 789999999999999999888754432 222367
Q ss_pred HHHhcCCCCcHhhHHHHHHHHHHhhc
Q psy6770 150 DYVARPDRISGADINAICQEVIMATN 175 (362)
Q Consensus 150 ~la~~t~g~s~~di~~l~~~a~~~~~ 175 (362)
.++..+.| +.+++..++..+...+.
T Consensus 290 ~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 290 FVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp HHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 77777655 78889999988877654
No 72
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.87 E-value=2.1e-09 Score=80.34 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=54.1
Q ss_pred ccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccc
Q psy6770 121 FPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178 (362)
Q Consensus 121 i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~ 178 (362)
-.+|+.++|.+||+.++++.++..++|+..+|+.|.||||+||.++|++|++.+.+..
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 3589999999999999999988888999999999999999999999999999988765
No 73
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.87 E-value=8.9e-10 Score=108.42 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=94.7
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCc
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGAD 70 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~ 70 (362)
|++|+++|..+ +.+++.++++ .+|.|+.+..++.+|+.+...+|+||||| .. .
T Consensus 215 T~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~-------~- 277 (468)
T 3pxg_A 215 TAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-------I- 277 (468)
T ss_dssp HHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C----------
T ss_pred HHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc-------h-
Confidence 47899999997 8899999998 77889988999999999999999999999 10 0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC--
Q psy6770 71 REVQRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-- 143 (362)
Q Consensus 71 ~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-- 143 (362)
...+.|+..| ..+.+.+|++||.+. .+|+++.| ||. .|.|+.|+.+++..|++.+...+...
T Consensus 278 ----~a~~~L~~~L----~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~ 346 (468)
T 3pxg_A 278 ----DASNILKPSL----ARGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHR 346 (468)
T ss_dssp ----------CCCT----TSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSS
T ss_pred ----hHHHHHHHhh----cCCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 1122222222 345799999999987 79999999 997 59999999999999999887663211
Q ss_pred ---CcCCHHHHHhcC-----CCCcHhhHHHHHHHHHHh
Q psy6770 144 ---DEVDLEDYVARP-----DRISGADINAICQEVIMA 173 (362)
Q Consensus 144 ---~~~dl~~la~~t-----~g~s~~di~~l~~~a~~~ 173 (362)
.+..+..++..+ ..+.+.....++.+|...
T Consensus 347 ~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~ 384 (468)
T 3pxg_A 347 VSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (468)
T ss_dssp CSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHH
Confidence 111233333332 334444566666665543
No 74
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.81 E-value=2.7e-09 Score=98.31 Aligned_cols=86 Identities=28% Similarity=0.476 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHH
Q psy6770 90 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQ 168 (362)
Q Consensus 90 ~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~ 168 (362)
..++++|++||.|+.+|+++++ ||+..+++++|+.++|..+++.++...+.. ++.++..++..+.|+++++|..+|+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3579999999999999999999 999999999999999999999998876532 3446888999999999999999999
Q ss_pred HHHHhhccc
Q psy6770 169 EVIMATNRA 177 (362)
Q Consensus 169 ~a~~~~~r~ 177 (362)
+|...+.+.
T Consensus 235 ~a~~~a~r~ 243 (297)
T 3b9p_A 235 DAALEPIRE 243 (297)
T ss_dssp HHTTHHHHT
T ss_pred HHHHHHHHH
Confidence 998877664
No 75
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.81 E-value=5.9e-09 Score=88.41 Aligned_cols=113 Identities=20% Similarity=0.331 Sum_probs=84.1
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhhh--hhcCchHHHHHHHHHHHHHc-CCeEEEeccccccccccCCCCC
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFVQ--KYLGEGPRMVRDVFRLAKEN-SPAIIFIDEIDAIATKRFDAQT 67 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~~--~~~gese~~l~~~F~~a~~~-~P~II~iDeiD~l~~~r~~~~~ 67 (362)
|.||+++|.++ +.+++.++++.+.. .+.|.....++.++..+... .|++|+|||+|.+.+.+.....
T Consensus 57 T~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~ 136 (187)
T 2p65_A 57 TAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG 136 (187)
T ss_dssp HHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT
T ss_pred HHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc
Confidence 46899999987 89999999988764 35566777888888888766 7899999999999866532111
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCC
Q psy6770 68 GADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPD 125 (362)
Q Consensus 68 ~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~ 125 (362)
.......+..++. ..++++|++||.+. .+|+++.+ ||.. ++++.|+
T Consensus 137 --~~~~~~~l~~~~~-------~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 137 --ALDAGNILKPMLA-------RGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp --SCCTHHHHHHHHH-------TTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred --chHHHHHHHHHHh-------cCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 1112334444442 35688999998875 68999999 9985 9999986
No 76
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.80 E-value=2.3e-08 Score=94.92 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=109.6
Q ss_pred CcHHHHHHhhh---------CCcEEEEechhhhhh----------------hcCc-hHHHHHHHHHHHHHcC-CeEEEec
Q psy6770 1 YLLCTSFDTEL---------VTAFIRVVGSEFVQK----------------YLGE-GPRMVRDVFRLAKENS-PAIIFID 53 (362)
Q Consensus 1 slLakaiA~e~---------~~~~~~v~~s~l~~~----------------~~ge-se~~l~~~F~~a~~~~-P~II~iD 53 (362)
|.|++++++++ +.+++.+++....+. ..|. ....+..+++.+...+ |++|+||
T Consensus 58 T~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilD 137 (387)
T 2v1u_A 58 TAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLD 137 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc
Confidence 46899999988 899999998653211 1232 2334566666665443 8999999
Q ss_pred cccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCC---CCCCccccCCCccee-EEEccCCCHHHH
Q psy6770 54 EIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA---DTLDPALLRPGRLDR-KIEFPLPDRRQK 129 (362)
Q Consensus 54 eiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~---~~ld~al~r~gRf~~-~i~i~~P~~~~r 129 (362)
|+|.+...+ .....+..++..++......++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.++.
T Consensus 138 Ei~~l~~~~---------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~ 206 (387)
T 2v1u_A 138 EIDFLPKRP---------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQL 206 (387)
T ss_dssp TTTHHHHST---------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHH
T ss_pred cHhhhcccC---------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHH
Confidence 999996432 0235677777776654225688999999988 788999998 9875 899999999999
Q ss_pred HHHHHHHHcc--CCCC-CcCCHHHHHhcCC---CCcHhhHHHHHHHHHHhhc
Q psy6770 130 RLVFSTITAK--MNLS-DEVDLEDYVARPD---RISGADINAICQEVIMATN 175 (362)
Q Consensus 130 ~~il~~~~~~--~~~~-~~~dl~~la~~t~---g~s~~di~~l~~~a~~~~~ 175 (362)
..+++..+.. .... ++..+..++..+. | .+..+.++|..|...+.
T Consensus 207 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 207 RDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAE 257 (387)
T ss_dssp HHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH
Confidence 9999988764 1111 2223455555544 4 45566677777766543
No 77
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.78 E-value=1.6e-08 Score=96.57 Aligned_cols=172 Identities=16% Similarity=0.235 Sum_probs=99.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhh-hhhcCch-HHHHHHHHHHHH----HcCCeEEEeccccccccccCCCCCCCcHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFV-QKYLGEG-PRMVRDVFRLAK----ENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~-~~~~ges-e~~l~~~F~~a~----~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~ 74 (362)
|++|+++|++++.+|+.++++.+. ..|.|+. +..+..+|..+. ...++||||||+|.+...+.+.....+....
T Consensus 86 T~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 165 (376)
T 1um8_A 86 TLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGE 165 (376)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CH
T ss_pred HHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchH
Confidence 579999999999999999998876 4566764 556677766543 3467999999999998775433222222112
Q ss_pred HHHHHHHHhccCCC-------------------CCCCeEEEEEcCC----------------------------------
Q psy6770 75 RILLELLNQMDGFD-------------------QTTNVKVIMATNR---------------------------------- 101 (362)
Q Consensus 75 ~~l~~lL~~ld~l~-------------------~~~~v~vi~tTn~---------------------------------- 101 (362)
.+.+.|+..|++.. ...++++|++||.
T Consensus 166 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~ 245 (376)
T 1um8_A 166 GVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 245 (376)
T ss_dssp HHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGG
T ss_pred HHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhh
Confidence 35566666666420 1245678888772
Q ss_pred -------CCCCCccccCCCcceeEEEccCCCHHHHHHHHHH----HHc-------cCCCC---CcCCHHHHHhcC--CCC
Q psy6770 102 -------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST----ITA-------KMNLS---DEVDLEDYVARP--DRI 158 (362)
Q Consensus 102 -------~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~----~~~-------~~~~~---~~~dl~~la~~t--~g~ 158 (362)
...+.|++.. ||+..+.|+.++.++...++.. ++. ..... ++..+..++... ...
T Consensus 246 ~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 323 (376)
T 1um8_A 246 VQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT 323 (376)
T ss_dssp CCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC
T ss_pred cCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhccccc
Confidence 1124566777 8988999999999999888862 111 11111 111234444442 235
Q ss_pred cHhhHHHHHHHHHHhh
Q psy6770 159 SGADINAICQEVIMAT 174 (362)
Q Consensus 159 s~~di~~l~~~a~~~~ 174 (362)
...++.+++..++..+
T Consensus 324 ~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 324 GARGLRAIIEDFCLDI 339 (376)
T ss_dssp TGGGHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6778888887776643
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.71 E-value=4.4e-08 Score=101.99 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=102.0
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|++|+++|..+ +.+|+.++++.+.+.+... -..++..++...++||||||||.+- ......+
T Consensus 535 T~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~L 599 (758)
T 3pxi_A 535 TELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH-----------PDVFNIL 599 (758)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC-----------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC-----------HHHHHHH
Confidence 47899999998 7899999999998877654 1223445556667999999999763 2223444
Q ss_pred HHHHHhccC------CCCCCCeEEEEEcCCCCC------------CCccccCCCcceeEEEccCCCHHHHHHHHHHHHcc
Q psy6770 78 LELLNQMDG------FDQTTNVKVIMATNRADT------------LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK 139 (362)
Q Consensus 78 ~~lL~~ld~------l~~~~~v~vi~tTn~~~~------------ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~ 139 (362)
.++++.-.- .....++++|+|||.+.. ++|++.. ||+..|.|++|+.+++..|++.++..
T Consensus 600 l~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 600 LQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp HHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred HHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 444433110 012346899999998665 7888888 99999999999999999999887764
Q ss_pred C-------CCC---CcCCHHHHHhc--CCCCcHhhHHHHHHHHHHh
Q psy6770 140 M-------NLS---DEVDLEDYVAR--PDRISGADINAICQEVIMA 173 (362)
Q Consensus 140 ~-------~~~---~~~dl~~la~~--t~g~s~~di~~l~~~a~~~ 173 (362)
. ... ++..+..++.. ...+...+++++++.++..
T Consensus 678 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~ 723 (758)
T 3pxi_A 678 LTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVED 723 (758)
T ss_dssp HHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHH
T ss_pred HHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH
Confidence 3 111 11123444432 3345566677776665443
No 79
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.71 E-value=1.1e-07 Score=82.61 Aligned_cols=147 Identities=17% Similarity=0.172 Sum_probs=97.5
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhhhhhhcCchHHHHHHHHHHH-H-----HcCCeEEEeccccccccccCCCCCCC
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLA-K-----ENSPAIIFIDEIDAIATKRFDAQTGA 69 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l~~~~~gese~~l~~~F~~a-~-----~~~P~II~iDeiD~l~~~r~~~~~~~ 69 (362)
|.|++++++++ +..++.++++...+. ..+...+... . ...|.+|+|||+|.+...
T Consensus 52 T~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------- 117 (226)
T 2chg_A 52 TATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------- 117 (226)
T ss_dssp HHHHHHHHHHHHGGGGGGGEEEEETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--------
T ss_pred HHHHHHHHHHHhccccccceEEeccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--------
Confidence 46888888875 567888887654321 2222222222 2 246899999999988532
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCH
Q psy6770 70 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDL 148 (362)
Q Consensus 70 ~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl 148 (362)
....+..++.. ...++.+|++||.++.+++++.+ ||. .++++.|+.++...+++..+...+.. ++..+
T Consensus 118 ---~~~~l~~~l~~-----~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 186 (226)
T 2chg_A 118 ---AQAALRRTMEM-----YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGL 186 (226)
T ss_dssp ---HHHHHHHHHHH-----TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHH
T ss_pred ---HHHHHHHHHHh-----cCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 12334444433 24578889999999999999999 997 89999999999999999888654432 22245
Q ss_pred HHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 149 EDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 149 ~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
..++..+.| .+..+.++++.+...
T Consensus 187 ~~l~~~~~g-~~r~l~~~l~~~~~~ 210 (226)
T 2chg_A 187 EALIYISGG-DFRKAINALQGAAAI 210 (226)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 566665544 455555555555543
No 80
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.70 E-value=1.4e-08 Score=76.32 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhccC
Q psy6770 125 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFP 197 (362)
Q Consensus 125 ~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~~~ 197 (362)
+.++|.+||+.++++.++.+++|+..+|..|.||||+||.++|++|.+.+.+... ..+....+...+...
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~---~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR---KVATEKDFLKAVDKV 71 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC---SSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc---ccCCHHHHHHHHHHH
Confidence 5678999999999999998899999999999999999999999999999988753 235555555555443
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.69 E-value=2.5e-08 Score=103.84 Aligned_cols=154 Identities=18% Similarity=0.245 Sum_probs=103.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhh------------hcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQK------------YLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~------------~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|++|+++|..++.+|+.++++.+..+ |.|..+. ..+....+...++||||||||.+-
T Consensus 502 T~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~--------- 570 (758)
T 1r6b_X 502 TEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH--------- 570 (758)
T ss_dssp HHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC---------
T ss_pred HHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC---------
Confidence 47899999999999999999987543 3332221 223445555667999999999763
Q ss_pred CcHHHHHHHHHHHHhccCCC---------CCCCeEEEEEcCCCC-------------------------CCCccccCCCc
Q psy6770 69 ADREVQRILLELLNQMDGFD---------QTTNVKVIMATNRAD-------------------------TLDPALLRPGR 114 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~ld~l~---------~~~~v~vi~tTn~~~-------------------------~ld~al~r~gR 114 (362)
. .+++.|++.|+.-. .-.++++|+|||.+. .++|++++ |
T Consensus 571 --~---~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R 643 (758)
T 1r6b_X 571 --P---DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--R 643 (758)
T ss_dssp --H---HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--T
T ss_pred --H---HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--h
Confidence 2 34445555444210 014688999999854 57888998 9
Q ss_pred ceeEEEccCCCHHHHHHHHHHHHccCC-------CC---CcCCHHHHHhc--CCCCcHhhHHHHHHHHHH
Q psy6770 115 LDRKIEFPLPDRRQKRLVFSTITAKMN-------LS---DEVDLEDYVAR--PDRISGADINAICQEVIM 172 (362)
Q Consensus 115 f~~~i~i~~P~~~~r~~il~~~~~~~~-------~~---~~~dl~~la~~--t~g~s~~di~~l~~~a~~ 172 (362)
|+..|.|++|+.+++..|++.++.... .. ++..+..++.. ..++...++.++++.++.
T Consensus 644 ~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 644 LDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred CCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 999999999999999999998876321 00 11123344432 245567777777776654
No 82
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.68 E-value=1.9e-08 Score=95.48 Aligned_cols=85 Identities=29% Similarity=0.537 Sum_probs=75.4
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHH
Q psy6770 91 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQE 169 (362)
Q Consensus 91 ~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~ 169 (362)
.+++||++||.++.+|++++| ||+..++++.|+.++|.++++.++...... .+.++..++..+.||++++|..+|++
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 478999999999999999999 999999999999999999999998765432 34568889999999999999999999
Q ss_pred HHHhhccc
Q psy6770 170 VIMATNRA 177 (362)
Q Consensus 170 a~~~~~r~ 177 (362)
|...+.+.
T Consensus 298 a~~~~ir~ 305 (357)
T 3d8b_A 298 ASLGPIRS 305 (357)
T ss_dssp HHTHHHHH
T ss_pred HHHHHHHH
Confidence 98877663
No 83
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.68 E-value=1.5e-08 Score=93.69 Aligned_cols=161 Identities=21% Similarity=0.312 Sum_probs=102.4
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhh-----hcCchH-----HHHHHHHHHHHHcCCeEEEeccccccccccCCCCC
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQK-----YLGEGP-----RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQT 67 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~-----~~gese-----~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~ 67 (362)
|++|++||+.+ +.+++.++++.+... ++|... .....+........++||||||+|.+.+
T Consensus 61 t~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------- 133 (311)
T 4fcw_A 61 TELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP------- 133 (311)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-------
T ss_pred HHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-------
Confidence 57899999998 567999999865322 221100 0001233333444459999999998732
Q ss_pred CCcHHHHHHHHHHHHhccCCC------CCCCeEEEEEcCC--------------------------CCCCCccccCCCcc
Q psy6770 68 GADREVQRILLELLNQMDGFD------QTTNVKVIMATNR--------------------------ADTLDPALLRPGRL 115 (362)
Q Consensus 68 ~~~~~~~~~l~~lL~~ld~l~------~~~~v~vi~tTn~--------------------------~~~ld~al~r~gRf 115 (362)
.....+..++..-.-.. .-.++++|+|||. ...+++++.. ||
T Consensus 134 ----~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~ 207 (311)
T 4fcw_A 134 ----DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RL 207 (311)
T ss_dssp ----HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TC
T ss_pred ----HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cC
Confidence 22334444443311000 1136889999998 4578889998 99
Q ss_pred eeEEEccCCCHHHHHHHHHHHHccCC-------CC---CcCCHHHHHhcCC--CCcHhhHHHHHHHHHHhh
Q psy6770 116 DRKIEFPLPDRRQKRLVFSTITAKMN-------LS---DEVDLEDYVARPD--RISGADINAICQEVIMAT 174 (362)
Q Consensus 116 ~~~i~i~~P~~~~r~~il~~~~~~~~-------~~---~~~dl~~la~~t~--g~s~~di~~l~~~a~~~~ 174 (362)
+..+.+++|+.+++..|++.++.... .. ++..+..++...- .....++.++++.++..+
T Consensus 208 ~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 208 DEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp SEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 99999999999999999998776531 11 1123455555433 567788888888776643
No 84
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.67 E-value=2e-10 Score=112.75 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=44.2
Q ss_pred eEEEEecCCCCCCCccccCCCCcce--eEEecCCCH--HHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHH
Q psy6770 224 LQVIMATNRADTLDPALLRPGRLDR--KIEFPLPDR--RQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQ 299 (362)
Q Consensus 224 v~vi~aTn~~~~lD~a~~RpgRfd~--~i~~~~P~~--~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~ 299 (362)
++|++|||+++.+|+|+.||||||+ .+++++|+. ++|.+|++.+.. .|++.++..|+| ||||.++|.
T Consensus 191 v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~~l~~ 261 (456)
T 2c9o_A 191 IYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDILSMMG 261 (456)
T ss_dssp EEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC----------------
T ss_pred EEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHHHHHh
Confidence 5666999999999999999999999 788899954 778888776553 268999999999 999999996
Q ss_pred H
Q psy6770 300 E 300 (362)
Q Consensus 300 ~ 300 (362)
.
T Consensus 262 ~ 262 (456)
T 2c9o_A 262 Q 262 (456)
T ss_dssp -
T ss_pred h
Confidence 4
No 85
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.65 E-value=1.2e-07 Score=83.43 Aligned_cols=122 Identities=18% Similarity=0.255 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHH----HcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAK----ENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~----~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+++.+. ...|.+|+|||+|.+.. .....++..++. ...++.+|++||.+..+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~--------------~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 108 VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH--------------HHHHHHHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHhhhchhcCCceEEEEECcccccH--------------HHHHHHHHHHhc--CCCceEEEEEeCChHhCCH
Confidence 344566666543 23579999999998731 233444544443 3457889999999999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
++.+ |+ ..++++.|+.++..++++..+...+.. ++..+..+++.+.| .+..+.+++..++..
T Consensus 172 ~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~ 234 (250)
T 1njg_A 172 TILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIAS 234 (250)
T ss_dssp HHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 9998 75 789999999999999999888765432 22246778888877 788899999887644
No 86
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.65 E-value=6.7e-08 Score=89.84 Aligned_cols=123 Identities=11% Similarity=0.161 Sum_probs=91.8
Q ss_pred CcHHHHHHhhh----------CCcEEEEechhhhh----------hh------cCchHHHHHHHHHHH--HHcCCeEEEe
Q psy6770 1 YLLCTSFDTEL----------VTAFIRVVGSEFVQ----------KY------LGEGPRMVRDVFRLA--KENSPAIIFI 52 (362)
Q Consensus 1 slLakaiA~e~----------~~~~~~v~~s~l~~----------~~------~gese~~l~~~F~~a--~~~~P~II~i 52 (362)
|++++++++++ ++.+++|+|..+.+ .. .|++...++.+|+.. ....|+||++
T Consensus 59 T~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~l 138 (318)
T 3te6_A 59 FQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILI 138 (318)
T ss_dssp HHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEE
Confidence 46889999998 56899999865432 22 245677899999876 4456899999
Q ss_pred ccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCC----CCccccCCCcce-eEEEccCCCHH
Q psy6770 53 DEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT----LDPALLRPGRLD-RKIEFPLPDRR 127 (362)
Q Consensus 53 DeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~----ld~al~r~gRf~-~~i~i~~P~~~ 127 (362)
||+|.+. . ..++..++.... ....++.+|+++|..+. +++++.+ ||. .+|.|++++.+
T Consensus 139 DE~d~l~-~------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~ 201 (318)
T 3te6_A 139 QNPENLL-S------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKN 201 (318)
T ss_dssp ECCSSSC-C------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHH
T ss_pred ecHHHhh-c------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHH
Confidence 9999997 1 145555655433 24568999999998865 3555666 886 68999999999
Q ss_pred HHHHHHHHHHccC
Q psy6770 128 QKRLVFSTITAKM 140 (362)
Q Consensus 128 ~r~~il~~~~~~~ 140 (362)
+...|++..+...
T Consensus 202 el~~Il~~Rl~~~ 214 (318)
T 3te6_A 202 ELQQMIITRLKSL 214 (318)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888754
No 87
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=1.9e-08 Score=100.13 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=90.7
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHH-------HHHHHHHHH-----HHcCCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPR-------MVRDVFRLA-----KENSPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~-------~l~~~F~~a-----~~~~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|.+|+++|+++|++++.++++++.+.+..+... .+..+|..+ ....|+||||||+|.+....
T Consensus 91 Ttla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~------ 164 (516)
T 1sxj_A 91 TTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD------ 164 (516)
T ss_dssp HHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS------
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh------
Confidence 478999999999999999998875543221110 022334333 23468999999999997532
Q ss_pred CcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCC
Q psy6770 69 ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVD 147 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~d 147 (362)
......+..++.. ...++++++++.....+++ +. |+...+.|+.|+.+++..++...+...+.. ++..
T Consensus 165 --~~~l~~L~~~l~~-----~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~ 233 (516)
T 1sxj_A 165 --RGGVGQLAQFCRK-----TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV 233 (516)
T ss_dssp --TTHHHHHHHHHHH-----CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH
T ss_pred --HHHHHHHHHHHHh-----cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1112334444432 2234555554444344543 44 455689999999999999998777554332 2234
Q ss_pred HHHHHhcCCCCcHhhHHHHHHHH
Q psy6770 148 LEDYVARPDRISGADINAICQEV 170 (362)
Q Consensus 148 l~~la~~t~g~s~~di~~l~~~a 170 (362)
+..+++.+. +++..+++..
T Consensus 234 l~~la~~s~----GdiR~~i~~L 252 (516)
T 1sxj_A 234 IDRLIQTTR----GDIRQVINLL 252 (516)
T ss_dssp HHHHHHHTT----TCHHHHHHHH
T ss_pred HHHHHHHcC----CcHHHHHHHH
Confidence 777777754 4555554433
No 88
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.63 E-value=1.3e-07 Score=88.15 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=81.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHc-----CCeEEEeccccccccccCCCCCCCcHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN-----SPAIIFIDEIDAIATKRFDAQTGADREVQR 75 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~-----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~ 75 (362)
|.+|+++|++++.+++.+++++.. ...++..+...... .+.||||||+|.+.+. ....
T Consensus 62 T~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~----------~~~~ 124 (324)
T 3u61_B 62 TTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA----------ESQR 124 (324)
T ss_dssp HHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH----------HHHH
T ss_pred HHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH----------HHHH
Confidence 468999999999999999987632 34455544443332 5789999999988511 1223
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHH
Q psy6770 76 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 137 (362)
Q Consensus 76 ~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~ 137 (362)
.+..++... ..++.+|++||.+..+++++++ ||. .++|+.|+.++|.++++..+
T Consensus 125 ~L~~~le~~-----~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 125 HLRSFMEAY-----SSNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp HHHHHHHHH-----GGGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-----CCCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 444444432 2467889999999999999999 995 79999999999877765543
No 89
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.62 E-value=8e-08 Score=93.79 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=99.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRI 76 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~ 76 (362)
|+||++||+.++.+|+.+++... +.+.++.+|+.+.. ..++||||||+|.+....
T Consensus 64 TtlAr~ia~~~~~~f~~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-------------- 122 (447)
T 3pvs_A 64 TTLAEVIARYANADVERISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-------------- 122 (447)
T ss_dssp HHHHHHHHHHTTCEEEEEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------
T ss_pred HHHHHHHHHHhCCCeEEEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH--------------
Confidence 47999999999999999987432 34556777776654 358999999999884321
Q ss_pred HHHHHHhccCCCCCCCeEEEEEc--CCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCC-------CC-CcC
Q psy6770 77 LLELLNQMDGFDQTTNVKVIMAT--NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN-------LS-DEV 146 (362)
Q Consensus 77 l~~lL~~ld~l~~~~~v~vi~tT--n~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~-------~~-~~~ 146 (362)
...||..++. ..+++|++| |....+++++.+ |+. ++.++.|+.+++..+++..+.... .. ++.
T Consensus 123 q~~LL~~le~----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~ 195 (447)
T 3pvs_A 123 QDAFLPHIED----GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDE 195 (447)
T ss_dssp --CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHH
T ss_pred HHHHHHHHhc----CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHH
Confidence 1223433442 456677666 334589999999 986 788999999999999999887621 10 112
Q ss_pred CHHHHHhcCCCCcHhhHHHHHHHHHHhhc
Q psy6770 147 DLEDYVARPDRISGADINAICQEVIMATN 175 (362)
Q Consensus 147 dl~~la~~t~g~s~~di~~l~~~a~~~~~ 175 (362)
.+..++..+.| ...++.+++..++..+.
T Consensus 196 al~~L~~~~~G-d~R~lln~Le~a~~~a~ 223 (447)
T 3pvs_A 196 TRRAIAELVNG-DARRALNTLEMMADMAE 223 (447)
T ss_dssp HHHHHHHHHCS-CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhcc
Confidence 35666666443 56677777777776654
No 90
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.61 E-value=7.3e-08 Score=71.41 Aligned_cols=54 Identities=78% Similarity=1.123 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccc
Q psy6770 125 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178 (362)
Q Consensus 125 ~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~ 178 (362)
+.++|.+||+.++++.++.+++|+..++..|.||||+||.++|++|.+.+.+..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999988888999999999999999999999999999998765
No 91
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.60 E-value=4e-08 Score=86.85 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=98.6
Q ss_pred CcHHHHHHhhhC---CcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTELV---TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~~---~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|.||+++|++++ .+++.++++++...... .++. ...|.+|+|||+|.+.... .....+
T Consensus 66 T~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~~---------~~~~~l 126 (242)
T 3bos_A 66 THLIHAACARANELERRSFYIPLGIHASISTA--------LLEG--LEQFDLICIDDVDAVAGHP---------LWEEAI 126 (242)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTCH---------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHh--ccCCCEEEEeccccccCCH---------HHHHHH
Confidence 468899988775 78889998887654311 1111 1457999999999885321 112333
Q ss_pred HHHHHhccCCCCCCCe-EEEEEcCCCC---CCCccccCCCcce--eEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHH
Q psy6770 78 LELLNQMDGFDQTTNV-KVIMATNRAD---TLDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLED 150 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v-~vi~tTn~~~---~ld~al~r~gRf~--~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~ 150 (362)
..++.... ..+.+ +++.+++.+. .+++++.+ ||. ..++++.|+.+++.++++..+...+.. ++..+..
T Consensus 127 ~~~l~~~~---~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 201 (242)
T 3bos_A 127 FDLYNRVA---EQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRF 201 (242)
T ss_dssp HHHHHHHH---HHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHH---HcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 33333322 22334 5555554454 45678888 886 899999999999999999988765432 2224566
Q ss_pred HHhcCCCCcHhhHHHHHHHHHHhhc
Q psy6770 151 YVARPDRISGADINAICQEVIMATN 175 (362)
Q Consensus 151 la~~t~g~s~~di~~l~~~a~~~~~ 175 (362)
++..+.| +..++.+++..+...+.
T Consensus 202 l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 202 LLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp HHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHccC-CHHHHHHHHHHHHHHHH
Confidence 7777655 77888888888877663
No 92
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.56 E-value=1.9e-07 Score=88.76 Aligned_cols=155 Identities=20% Similarity=0.231 Sum_probs=102.9
Q ss_pred CcHHHHHHhhh-----------CCcEEEEechhhh-----------hhh-------cCc-hHHHHHHHHHHHHHcCCeEE
Q psy6770 1 YLLCTSFDTEL-----------VTAFIRVVGSEFV-----------QKY-------LGE-GPRMVRDVFRLAKENSPAII 50 (362)
Q Consensus 1 slLakaiA~e~-----------~~~~~~v~~s~l~-----------~~~-------~ge-se~~l~~~F~~a~~~~P~II 50 (362)
|.||+++++++ +.+++.+++.... ... .|. ....+..+++.+....+ +|
T Consensus 59 T~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vl 137 (384)
T 2qby_B 59 TFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-II 137 (384)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EE
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EE
Confidence 46899999988 9999999987543 111 122 13445566665555554 99
Q ss_pred EeccccccccccCCCCCCCcHHHHHH-HHHHHHhccCCCCCCCeEEEEEcCCC---CCCCccccCCCcceeEEEccCCCH
Q psy6770 51 FIDEIDAIATKRFDAQTGADREVQRI-LLELLNQMDGFDQTTNVKVIMATNRA---DTLDPALLRPGRLDRKIEFPLPDR 126 (362)
Q Consensus 51 ~iDeiD~l~~~r~~~~~~~~~~~~~~-l~~lL~~ld~l~~~~~v~vi~tTn~~---~~ld~al~r~gRf~~~i~i~~P~~ 126 (362)
+|||+|.+...+ . ... +..++... .++.+|++||.+ +.+++.+.+ ||...+++++|+.
T Consensus 138 ilDEi~~l~~~~------~----~~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~ 199 (384)
T 2qby_B 138 YLDEVDTLVKRR------G----GDIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDA 199 (384)
T ss_dssp EEETTHHHHHST------T----SHHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCH
T ss_pred EEECHHHhccCC------C----CceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCH
Confidence 999999996432 0 123 44444332 688999999987 688999988 9878999999999
Q ss_pred HHHHHHHHHHHcc----CCCCCcCCHHHHHhcCCCC--cHhhHHHHHHHHHHhhc
Q psy6770 127 RQKRLVFSTITAK----MNLSDEVDLEDYVARPDRI--SGADINAICQEVIMATN 175 (362)
Q Consensus 127 ~~r~~il~~~~~~----~~~~~~~dl~~la~~t~g~--s~~di~~l~~~a~~~~~ 175 (362)
++...+++..+.. ..+.+ ..+..++..+.+. ....+.++|+.|...+.
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDD-EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCS-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcccCCcCH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 9999999988763 12222 2345555554321 23344566666665543
No 93
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.54 E-value=6.9e-08 Score=92.57 Aligned_cols=86 Identities=27% Similarity=0.451 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHH
Q psy6770 90 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQ 168 (362)
Q Consensus 90 ~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~ 168 (362)
..+++||+|||.++.+|++++| ||+..++++.|+.++|..||+.++...... .+.++..++..+.|+++++|..+|+
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999999 999999999999999999999998775433 3346889999999999999999999
Q ss_pred HHHHhhccc
Q psy6770 169 EVIMATNRA 177 (362)
Q Consensus 169 ~a~~~~~r~ 177 (362)
.|...+.+.
T Consensus 328 ~a~~~~~re 336 (389)
T 3vfd_A 328 DAALGPIRE 336 (389)
T ss_dssp HHTTHHHHT
T ss_pred HHHHHHHHh
Confidence 998777654
No 94
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.43 E-value=5.1e-07 Score=85.43 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=104.1
Q ss_pred CcHHHHHHhhh------CCcEEEEechhhhh------h----------hcCc-hHHHHHHHHHHHHHcC-CeEEEecccc
Q psy6770 1 YLLCTSFDTEL------VTAFIRVVGSEFVQ------K----------YLGE-GPRMVRDVFRLAKENS-PAIIFIDEID 56 (362)
Q Consensus 1 slLakaiA~e~------~~~~~~v~~s~l~~------~----------~~ge-se~~l~~~F~~a~~~~-P~II~iDeiD 56 (362)
|.|++++++++ +.+++.+++..... . ..|. ....++.+++.+.... |++|+|||+|
T Consensus 59 Ttl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~ 138 (386)
T 2qby_A 59 TAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEID 138 (386)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 57899999988 89999999764321 1 1122 2344566666666554 9999999999
Q ss_pred ccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCC---CCCCccccCCCcce-eEEEccCCCHHHHHHH
Q psy6770 57 AIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA---DTLDPALLRPGRLD-RKIEFPLPDRRQKRLV 132 (362)
Q Consensus 57 ~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~---~~ld~al~r~gRf~-~~i~i~~P~~~~r~~i 132 (362)
.+..... . ..+..++..++.+ ...++.+|++||.+ ..+++.+.+ ||. ..+.+++++.++..++
T Consensus 139 ~l~~~~~-------~---~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~i 205 (386)
T 2qby_A 139 AFVKKYN-------D---DILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDI 205 (386)
T ss_dssp HHHHSSC-------S---THHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHH
T ss_pred hhhccCc-------C---HHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHH
Confidence 9975421 1 2355555555543 34578899999987 467888887 775 5899999999999999
Q ss_pred HHHHHccC----CCCCcCCHHHHHhcCC---CCcHhhHHHHHHHHHHhhc
Q psy6770 133 FSTITAKM----NLSDEVDLEDYVARPD---RISGADINAICQEVIMATN 175 (362)
Q Consensus 133 l~~~~~~~----~~~~~~dl~~la~~t~---g~s~~di~~l~~~a~~~~~ 175 (362)
++..+... .+. +..+..++..+. | .+..+.++|..+...+.
T Consensus 206 l~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 206 LTKRAQMAFKPGVLP-DNVIKLCAALAAREHG-DARRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHBCSSCSC-HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCCC-HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 99876532 121 112344444443 4 34455567777765543
No 95
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.38 E-value=4.5e-06 Score=78.19 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=102.8
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|+|+++||+++++++...+++.+.. ...+..++.. ...+.|+||||+|.+.+. ....+...
T Consensus 65 TTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-----------~~e~L~~~ 125 (334)
T 1in4_A 65 TTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS--LERGDVLFIDEIHRLNKA-----------VEELLYSA 125 (334)
T ss_dssp HHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----------HHHHHHHH
Confidence 5799999999999998887765432 1223333332 235689999999988531 11222222
Q ss_pred HHhcc-------CCC------CCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcC
Q psy6770 81 LNQMD-------GFD------QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEV 146 (362)
Q Consensus 81 L~~ld-------~l~------~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~ 146 (362)
+.... +-. .-..+.++++|+.+..+++.+++ ||...+.+++|+.++..++++......... ++.
T Consensus 126 ~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~ 203 (334)
T 1in4_A 126 IEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDA 203 (334)
T ss_dssp HHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHH
Confidence 22110 000 01246778899999999999999 999899999999999999999887765443 222
Q ss_pred CHHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 147 DLEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 147 dl~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
.+..++.++.| +++.+..+++.+...+
T Consensus 204 ~~~~ia~~~~G-~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 204 AAEMIAKRSRG-TPRIAIRLTKRVRDML 230 (334)
T ss_dssp HHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 36678888777 4577778887776544
No 96
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.36 E-value=4.9e-08 Score=94.57 Aligned_cols=61 Identities=7% Similarity=-0.006 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhccCCeEEEEe-cCCCCCCCccccCCCCcceeEEecCCCHH-HHHHHH
Q psy6770 202 RQKRLVFSTITAKMNFMLNIGNLQVIMA-TNRADTLDPALLRPGRLDRKIEFPLPDRR-QKRLVF 264 (362)
Q Consensus 202 ~~k~~~~~~~l~~~~~~~~~~~v~vi~a-Tn~~~~lD~a~~RpgRfd~~i~~~~P~~~-~r~~i~ 264 (362)
..-.+++++++.+||++.+.+.+ +++ ||+|+.||+|++||||||+.|++++|+.. .|.+||
T Consensus 126 ~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 126 VAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 34567999999999999876665 454 99999999999999999999999999987 777775
No 97
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.35 E-value=1.1e-06 Score=80.99 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=96.6
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhhhhhhcCchHHHHHHHHHHHH--HcCCeEEEeccccccccccCCCCCCCcHHH
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAK--ENSPAIIFIDEIDAIATKRFDAQTGADREV 73 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~--~~~P~II~iDeiD~l~~~r~~~~~~~~~~~ 73 (362)
|.+|+++|+++ +.+++.+++++..+. ......+..+..... ...+.||+|||+|.+..
T Consensus 52 t~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------- 116 (319)
T 2chq_A 52 TATAIALARDLFGENWRDNFIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------- 116 (319)
T ss_dssp HHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-------------
T ss_pred HHHHHHHHHHhcCCcccCCeEEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-------------
Confidence 46889999886 557889988765331 111122222221111 13479999999998742
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHH
Q psy6770 74 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYV 152 (362)
Q Consensus 74 ~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la 152 (362)
...+.|+..++. ...++.+|++||.+..+++++.+ |+. .+.+++|+.++...++...+...+.. ++..+..++
T Consensus 117 -~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 190 (319)
T 2chq_A 117 -DAQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALI 190 (319)
T ss_dssp -HHHHTTGGGTSS--SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHH
T ss_pred -HHHHHHHHHHHh--cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 223445555553 34578899999999999999999 886 89999999999999999888766543 222456667
Q ss_pred hcCCCCcHhhHHHHHHHHH
Q psy6770 153 ARPDRISGADINAICQEVI 171 (362)
Q Consensus 153 ~~t~g~s~~di~~l~~~a~ 171 (362)
..+.| ....+.+.++.+.
T Consensus 191 ~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 191 YISGG-DFRKAINALQGAA 208 (319)
T ss_dssp HTTTT-CHHHHHHHHHHHH
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 66544 3334444444433
No 98
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.33 E-value=1.6e-06 Score=81.96 Aligned_cols=121 Identities=18% Similarity=0.250 Sum_probs=86.6
Q ss_pred HHHHHHHHHHH----cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccc
Q psy6770 34 MVRDVFRLAKE----NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPAL 109 (362)
Q Consensus 34 ~l~~~F~~a~~----~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al 109 (362)
.++.+++.+.. ..+.||+|||+|.+.. ...+.|+..++. ...++++|++|+.+..+++++
T Consensus 103 ~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 103 DTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CHHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------------HHHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHhhccccCCeEEEEEECcchhcH--------------HHHHHHHHHHhc--CCCceEEEEEeCChHhCcHHH
Confidence 35566666543 2478999999998732 223444554553 345788899999999999999
Q ss_pred cCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 110 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 110 ~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
.+ |+ ..++++.|+.++...+++..+...+.. ++..+..++..+.| .+..+.+++..+...+
T Consensus 167 ~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~~~ 228 (373)
T 1jr3_A 167 LS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASG 228 (373)
T ss_dssp HT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHHHT
T ss_pred Hh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhc
Confidence 98 87 789999999999999999888765443 12235667777766 6777888887776543
No 99
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.32 E-value=1.4e-07 Score=69.65 Aligned_cols=66 Identities=35% Similarity=0.527 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHHHHHHhhcccccCCCcccCccchhhhhc
Q psy6770 127 RQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIE 195 (362)
Q Consensus 127 ~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~~a~~~~~r~~~~~~~~i~~~~l~~~~~ 195 (362)
++|.+||+.++++.++.+++|+..++..|.||||+||.++|++|.+.+.+... ..+....+...+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~---~~i~~~df~~Al~ 66 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR---YVILQSDLEEAYA 66 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC---SEECHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---CCcCHHHHHHHHH
Confidence 47899999999998887889999999999999999999999999999887642 2344444444443
No 100
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.32 E-value=2.4e-06 Score=81.04 Aligned_cols=159 Identities=12% Similarity=0.079 Sum_probs=103.9
Q ss_pred CcHHHHHHhhh----CCcEEEEechhhhh------h---h-------cCc-hHHHHHHHHHHHHH-cCCeEEEecccccc
Q psy6770 1 YLLCTSFDTEL----VTAFIRVVGSEFVQ------K---Y-------LGE-GPRMVRDVFRLAKE-NSPAIIFIDEIDAI 58 (362)
Q Consensus 1 slLakaiA~e~----~~~~~~v~~s~l~~------~---~-------~ge-se~~l~~~F~~a~~-~~P~II~iDeiD~l 58 (362)
|.|++++++++ +..++.++++...+ . . .|. ....+..+.+.+.. ..|.||+|||+|.+
T Consensus 58 Ttl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 58 TVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 56899999998 78899999754321 1 0 121 23334444444444 34899999999988
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEEEcCCC---CCCCccccCCCccee-EEEccCCCHHHHHHH
Q psy6770 59 ATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRA---DTLDPALLRPGRLDR-KIEFPLPDRRQKRLV 132 (362)
Q Consensus 59 ~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~--~~~v~vi~tTn~~---~~ld~al~r~gRf~~-~i~i~~P~~~~r~~i 132 (362)
- . ..+..++..++.+.. ..++.+|++||.+ ..+++.+.+ ||.. .+.+++++.++...+
T Consensus 138 ~-----------~---~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~ 201 (389)
T 1fnn_A 138 A-----------P---DILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDI 201 (389)
T ss_dssp C-----------H---HHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHH
T ss_pred c-----------h---HHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHH
Confidence 1 1 334455555543321 1578899999988 678888888 8875 899999999999999
Q ss_pred HHHHHccC---CCCCcCCHHHHHhcCCC--------CcHhhHHHHHHHHHHhhc
Q psy6770 133 FSTITAKM---NLSDEVDLEDYVARPDR--------ISGADINAICQEVIMATN 175 (362)
Q Consensus 133 l~~~~~~~---~~~~~~dl~~la~~t~g--------~s~~di~~l~~~a~~~~~ 175 (362)
++..+... ..-++..+..++..+.+ =.+..+.++|+.|...+.
T Consensus 202 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 202 LLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp HHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 98887641 11122245566666632 245566777777766553
No 101
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.31 E-value=1.9e-06 Score=80.44 Aligned_cols=122 Identities=17% Similarity=0.269 Sum_probs=78.4
Q ss_pred CcHHHHHHhhhCCcEEEEech------hhhhhhcCchHHHHHHHHHHHHHcC---CeEEEeccccccccccCCCCCCCcH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGS------EFVQKYLGEGPRMVRDVFRLAKENS---PAIIFIDEIDAIATKRFDAQTGADR 71 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s------~l~~~~~gese~~l~~~F~~a~~~~---P~II~iDeiD~l~~~r~~~~~~~~~ 71 (362)
|+||+++|+.++.+++.++++ ++.+...-... ..-| ....+ .+|+||||+|.+.+
T Consensus 60 T~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~~~----------- 123 (331)
T 2r44_A 60 TLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQH---KGNF--EVKKGPVFSNFILADEVNRSPA----------- 123 (331)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETT---TTEE--EEEECTTCSSEEEEETGGGSCH-----------
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCC---CCce--EeccCcccccEEEEEccccCCH-----------
Confidence 579999999999999999873 23222110000 0000 00112 27999999998632
Q ss_pred HHHHHHHHHHHhcc----C--CCCCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccC
Q psy6770 72 EVQRILLELLNQMD----G--FDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 140 (362)
Q Consensus 72 ~~~~~l~~lL~~ld----~--l~~~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~ 140 (362)
.....+.+.+.+-. + .....++++|+|+|..+ .+++++++ ||+..++++.|+.+++.+|++......
T Consensus 124 ~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 124 KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccC
Confidence 12233444443311 1 11234677888888432 38999999 999999999999999999999887653
No 102
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.29 E-value=7.2e-07 Score=93.99 Aligned_cols=155 Identities=20% Similarity=0.294 Sum_probs=99.5
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhh------------hcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCC
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQK------------YLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDA 65 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~------------~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~ 65 (362)
|++|++||..+ +.+|+.++++.+... |+|..+ ...+....+...++||||||+|.+-
T Consensus 602 T~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~------ 673 (854)
T 1qvr_A 602 TELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH------ 673 (854)
T ss_dssp HHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC------
T ss_pred HHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC------
Confidence 46899999999 889999999876532 223222 1234444555556999999999762
Q ss_pred CCCCcHHHHHHHHHHHHhccCCC---------CCCCeEEEEEcCCC--------------------------CCCCcccc
Q psy6770 66 QTGADREVQRILLELLNQMDGFD---------QTTNVKVIMATNRA--------------------------DTLDPALL 110 (362)
Q Consensus 66 ~~~~~~~~~~~l~~lL~~ld~l~---------~~~~v~vi~tTn~~--------------------------~~ld~al~ 110 (362)
. .+.+.|++.|+.-. .-.++++|+|||.. ..+.|++.
T Consensus 674 -----~---~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~ 745 (854)
T 1qvr_A 674 -----P---DVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFL 745 (854)
T ss_dssp -----H---HHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHH
T ss_pred -----H---HHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHH
Confidence 2 34555665555311 11368899999972 34567777
Q ss_pred CCCcceeEEEccCCCHHHHHHHHHHHHccCC-------CC---CcCCHHHHHhcCC--CCcHhhHHHHHHHHHHh
Q psy6770 111 RPGRLDRKIEFPLPDRRQKRLVFSTITAKMN-------LS---DEVDLEDYVARPD--RISGADINAICQEVIMA 173 (362)
Q Consensus 111 r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~-------~~---~~~dl~~la~~t~--g~s~~di~~l~~~a~~~ 173 (362)
. ||+..+.+.+|+.++...|++.++.... .. ++..+..++...- .+...++.++++.++..
T Consensus 746 ~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~ 818 (854)
T 1qvr_A 746 N--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 818 (854)
T ss_dssp H--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHH
T ss_pred H--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Confidence 7 9999999999999999999988776321 11 1112344444332 45667777777766543
No 103
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=2.5e-06 Score=79.95 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=94.0
Q ss_pred CcHHHHHHhhhCC------cEEEEechhhhhhhcCchHHHHHHHHHHHHH----------------cCCeEEEecccccc
Q psy6770 1 YLLCTSFDTELVT------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----------------NSPAIIFIDEIDAI 58 (362)
Q Consensus 1 slLakaiA~e~~~------~~~~v~~s~l~~~~~gese~~l~~~F~~a~~----------------~~P~II~iDeiD~l 58 (362)
|.+|+++|++++. .++.+++++..+ ...++..+..... ..+.||+|||+|.+
T Consensus 72 T~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l 145 (353)
T 1sxj_D 72 TSTILALTKELYGPDLMKSRILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145 (353)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS
T ss_pred HHHHHHHHHHhCCCcccccceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc
Confidence 4689999988654 588888876421 1222222221111 23569999999988
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHc
Q psy6770 59 ATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITA 138 (362)
Q Consensus 59 ~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~ 138 (362)
.+.. ...+..++.+ ...++.+|.+||.+..+++++++ |+. .+.++.|+.++...+++..+.
T Consensus 146 ~~~~-----------~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 146 TADA-----------QSALRRTMET-----YSGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp CHHH-----------HHHHHHHHHH-----TTTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CHHH-----------HHHHHHHHHh-----cCCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 5321 2333334433 23456677788999999999999 986 889999999999999998876
Q ss_pred cCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 139 KMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 139 ~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
..++. ++..+..++..+.|- ...+.++++.+...
T Consensus 207 ~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 207 QENVKCDDGVLERILDISAGD-LRRGITLLQSASKG 241 (353)
T ss_dssp TTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHTHHH
T ss_pred HhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHh
Confidence 54432 223466777776653 44444445544443
No 104
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.27 E-value=8.1e-06 Score=76.38 Aligned_cols=77 Identities=19% Similarity=0.368 Sum_probs=54.0
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHh----ccCCC----CCCCeEEEEEcCCCC-CCCccccCCCcce
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ----MDGFD----QTTNVKVIMATNRAD-TLDPALLRPGRLD 116 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~----ld~l~----~~~~v~vi~tTn~~~-~ld~al~r~gRf~ 116 (362)
.+++|||||+|.+... ....+..++.. +.... ...++++|+|||... .+++++++ ||+
T Consensus 144 ~~~vl~iDEi~~l~~~-----------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~ 210 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH-----------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFG 210 (350)
T ss_dssp TTEEEEETTGGGSCHH-----------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCS
T ss_pred CCCEEEEeChhhCCHH-----------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcc
Confidence 3689999999987432 22334444443 11111 123788999999744 89999999 999
Q ss_pred eEEEccCC-CHHHHHHHHHH
Q psy6770 117 RKIEFPLP-DRRQKRLVFST 135 (362)
Q Consensus 117 ~~i~i~~P-~~~~r~~il~~ 135 (362)
..++++.| +.+++..|++.
T Consensus 211 ~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 211 LSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp EEEECCCCCSHHHHHHHHHH
T ss_pred eEEEcCCCCcHHHHHHHHHH
Confidence 99999999 57777788866
No 105
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=2.5e-06 Score=78.75 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=94.5
Q ss_pred CcHHHHHHhhh-----CCcEEEEechhhhhhhcCchHHHHHHHHHHHH-------HcCCeEEEeccccccccccCCCCCC
Q psy6770 1 YLLCTSFDTEL-----VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAK-------ENSPAIIFIDEIDAIATKRFDAQTG 68 (362)
Q Consensus 1 slLakaiA~e~-----~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~-------~~~P~II~iDeiD~l~~~r~~~~~~ 68 (362)
|.+|+++|+++ +.+++.+++++.. +...++.+++... ...+.||+|||+|.+...
T Consensus 56 t~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~------- 122 (323)
T 1sxj_B 56 TTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG------- 122 (323)
T ss_dssp HHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------
T ss_pred HHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------
Confidence 46788898886 4568888876532 1344555555544 223799999999988532
Q ss_pred CcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCC
Q psy6770 69 ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVD 147 (362)
Q Consensus 69 ~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~d 147 (362)
....+..++.+ ...++.+|++||.+..+++++.+ |+. .+.++.|+.++...+++..+...+.. ++..
T Consensus 123 ----~~~~L~~~le~-----~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 190 (323)
T 1sxj_B 123 ----AQQALRRTMEL-----YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDG 190 (323)
T ss_dssp ----HHHTTHHHHHH-----TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHH
T ss_pred ----HHHHHHHHHhc-----cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 12223333332 34567888899999999999998 875 89999999999999999887654432 2223
Q ss_pred HHHHHhcCCCCcHhhHHHHHHHH
Q psy6770 148 LEDYVARPDRISGADINAICQEV 170 (362)
Q Consensus 148 l~~la~~t~g~s~~di~~l~~~a 170 (362)
+..++..+.|- +..+.++++.+
T Consensus 191 ~~~l~~~~~G~-~r~a~~~l~~~ 212 (323)
T 1sxj_B 191 LEAIIFTAEGD-MRQAINNLQST 212 (323)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHH
Confidence 55666665543 33333444433
No 106
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=7.4e-06 Score=75.71 Aligned_cols=148 Identities=19% Similarity=0.180 Sum_probs=91.7
Q ss_pred CcHHHHHHhhhC-----CcEEEEechhhhhhhcCchHHHHHHHHHHH--HHcCCeEEEeccccccccccCCCCCCCcHHH
Q psy6770 1 YLLCTSFDTELV-----TAFIRVVGSEFVQKYLGEGPRMVRDVFRLA--KENSPAIIFIDEIDAIATKRFDAQTGADREV 73 (362)
Q Consensus 1 slLakaiA~e~~-----~~~~~v~~s~l~~~~~gese~~l~~~F~~a--~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~ 73 (362)
|.+|+++|++++ ..++.+++++..+.. .-...+....... ....+.+|+|||+|.+... .
T Consensus 60 T~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~ 126 (327)
T 1iqp_A 60 TTAALALARELFGENWRHNFLELNASDERGIN--VIREKVKEFARTKPIGGASFKIIFLDEADALTQD-----------A 126 (327)
T ss_dssp HHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH--TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-----------H
T ss_pred HHHHHHHHHHhcCCcccCceEEeeccccCchH--HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-----------H
Confidence 468899998864 358888877653210 1111122211100 0134789999999987421 1
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHH
Q psy6770 74 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYV 152 (362)
Q Consensus 74 ~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la 152 (362)
...+..++ +. ...++.+|++||.+..+++++.+ |+. .+.+++|+.++...+++..+...+.. ++..+..++
T Consensus 127 ~~~L~~~l---e~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 198 (327)
T 1iqp_A 127 QQALRRTM---EM--FSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAIL 198 (327)
T ss_dssp HHHHHHHH---HH--TTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHH
T ss_pred HHHHHHHH---Hh--cCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 23333333 32 24567888899999999999998 886 78999999999999999888765432 222355666
Q ss_pred hcCCCCcHhhHHHHHHHH
Q psy6770 153 ARPDRISGADINAICQEV 170 (362)
Q Consensus 153 ~~t~g~s~~di~~l~~~a 170 (362)
..+.| +...+.++++.+
T Consensus 199 ~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 199 YIAEG-DMRRAINILQAA 215 (327)
T ss_dssp HHHTT-CHHHHHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHH
Confidence 65544 344444444443
No 107
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.14 E-value=3.6e-06 Score=83.00 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=68.4
Q ss_pred CcHHHHHHhhhCC--cEEEEec-----hhhhhhhcCchHHHHHHHHHHHH-Hc--CCeEEEeccccccccccCCCCCCCc
Q psy6770 1 YLLCTSFDTELVT--AFIRVVG-----SEFVQKYLGEGPRMVRDVFRLAK-EN--SPAIIFIDEIDAIATKRFDAQTGAD 70 (362)
Q Consensus 1 slLakaiA~e~~~--~~~~v~~-----s~l~~~~~gese~~l~~~F~~a~-~~--~P~II~iDeiD~l~~~r~~~~~~~~ 70 (362)
|+||++||+.++. +|..+++ +++++.+.+..... ...|..+. .. .|+|+|||||+.+-
T Consensus 55 T~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~----------- 122 (500)
T 3nbx_X 55 SLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG----------- 122 (500)
T ss_dssp HHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCC-----------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------
Confidence 5799999999854 5555444 34554443332211 12232222 21 47899999997542
Q ss_pred HHHHHHHHHHHHhccC-------C-CCCCCeEEEEEcCCCCC---CCccccCCCcceeEEEccCCCH-HHHHHHHHHHH
Q psy6770 71 REVQRILLELLNQMDG-------F-DQTTNVKVIMATNRADT---LDPALLRPGRLDRKIEFPLPDR-RQKRLVFSTIT 137 (362)
Q Consensus 71 ~~~~~~l~~lL~~ld~-------l-~~~~~v~vi~tTn~~~~---ld~al~r~gRf~~~i~i~~P~~-~~r~~il~~~~ 137 (362)
. ...+.|+..|+. . ...+..++|+|||.+.. ..+++.+ ||...++++.|+. +++..|++...
T Consensus 123 ~---~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 123 P---AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp H---HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred H---HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 2 233444444431 1 11223356777775322 3348999 9999999999986 77888887654
No 108
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.14 E-value=9.2e-07 Score=97.78 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=79.5
Q ss_pred CcHHHHHHhhhCCc-----EEEEec--hhhh--------hhhcCc----hHHHHHHHHHHHHHcCCeEEEeccccccccc
Q psy6770 1 YLLCTSFDTELVTA-----FIRVVG--SEFV--------QKYLGE----GPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 1 slLakaiA~e~~~~-----~~~v~~--s~l~--------~~~~ge----se~~l~~~F~~a~~~~P~II~iDeiD~l~~~ 61 (362)
++||+++|.+.+.. |+.+.. .++. ++|+++ +|+.++.+|..|+...||+||+|++|+|++.
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcc
Confidence 47899999888665 666544 3344 778888 9999999999999999999999999999999
Q ss_pred cC---CCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCC-CCCC
Q psy6770 62 RF---DAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA-DTLD 106 (362)
Q Consensus 62 r~---~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~-~~ld 106 (362)
+. ...........|+++++|++|+++....+|+|| +||+. +.+.
T Consensus 1176 ~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~~~~~ 1223 (1706)
T 3cmw_A 1176 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQIRMKIG 1223 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECEEECTT
T ss_pred cccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccccccch
Confidence 53 121111234568899999999987667788888 66664 4443
No 109
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.12 E-value=8.5e-07 Score=88.68 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=74.2
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh-----ccCCCC---CCCC---HHHHhhCCCCCC
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT-----AKMNLS---DEVD---LEDYVARPDRIS 290 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l-----~~~~~~---~~~~---~~~la~~~~g~s 290 (362)
.++++|+|||.++.|||++++ ||+ .|+|+.|+.+++..|++.++ ....+. -.++ +..+++...+-.
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 578999999999999999999 996 79999999999999999987 222221 1223 333444222222
Q ss_pred H-----HHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHh
Q psy6770 291 G-----ADINAICQEAGMHAVREN--RYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 291 g-----adi~~~~~~a~~~a~~~~--~~~v~~~~~~~a~~~~~ 326 (362)
| ..|+.+|+.|+..++..+ ...|+.+++.+++...+
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCC
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCcc
Confidence 3 677888888888887753 34688999988876543
No 110
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.11 E-value=4e-06 Score=79.18 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=79.8
Q ss_pred CCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc
Q psy6770 231 NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEAGMHAVREN 309 (362)
Q Consensus 231 n~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~ 309 (362)
|.++.+|+++++ ||.. ++|+.|+.+++.++++..+...... ++-.++.+++.+.|.+++++.++|..|...|..++
T Consensus 238 ~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~ 314 (368)
T 3uk6_A 238 QSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK 314 (368)
T ss_dssp EEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 358899999999 9987 8999999999999999988764432 22347778888887899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhC
Q psy6770 310 RYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 310 ~~~v~~~~~~~a~~~~~~ 327 (362)
...|+.+|+.+++..+..
T Consensus 315 ~~~It~~~v~~a~~~~~~ 332 (368)
T 3uk6_A 315 GTEVQVDDIKRVYSLFLD 332 (368)
T ss_dssp CSSBCHHHHHHHHHHSBC
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 999999999999987543
No 111
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.01 E-value=1.3e-05 Score=74.82 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=85.7
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHH
Q psy6770 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEA 301 (362)
Q Consensus 223 ~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a 301 (362)
++.+|++||.+..+++++++ ||+..++++.|+.+++..+++.++...... ++..++.+++.+.| +..++.+++..+
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 230 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRV 230 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHH
Confidence 58999999999999999999 999999999999999999999999876543 22346677776555 568899999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 302 GMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 302 ~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
...+...+...|+.+++..++......
T Consensus 231 ~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 231 RDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 888877777889999999998876543
No 112
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=2e-05 Score=73.87 Aligned_cols=108 Identities=11% Similarity=0.220 Sum_probs=74.9
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCC
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 125 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~ 125 (362)
.|.||+|||+|.+- ......+..++.+. ..+..+|.+||.+..+.+.+++ |+ ..+.|++|+
T Consensus 134 ~~~vlilDE~~~L~-----------~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~ 194 (354)
T 1sxj_E 134 RYKCVIINEANSLT-----------KDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPS 194 (354)
T ss_dssp CCEEEEEECTTSSC-----------HHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCC
T ss_pred CCeEEEEeCccccC-----------HHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcC
Confidence 57799999999852 11223344444332 3467888899999999999999 98 889999999
Q ss_pred HHHHHHHHHHHHccCCCC-C-cCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 126 RRQKRLVFSTITAKMNLS-D-EVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 126 ~~~r~~il~~~~~~~~~~-~-~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
.++...+++..+...++. + +..+..++..+.| +.+++.++++.+...
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 195 DSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 999999999888655443 2 2346667766544 455555555555543
No 113
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.99 E-value=3.6e-05 Score=71.94 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCc
Q psy6770 32 PRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 107 (362)
Q Consensus 32 e~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~ 107 (362)
...++.+.+.+... .+.|++|||+|.+.. ...+.||..++. +..++++|.+||.++.+.+
T Consensus 90 i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~--------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ 153 (334)
T 1a5t_A 90 VDAVREVTEKLNEHARLGGAKVVWVTDAALLTD--------------AAANALLKTLEE--PPAETWFFLATREPERLLA 153 (334)
T ss_dssp HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH--------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCcEEEEECchhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcH
Confidence 45677777776532 368999999998842 234556666664 4567888999999999999
Q ss_pred cccCCCcceeEEEccCCCHHHHHHHHHHHH
Q psy6770 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 137 (362)
Q Consensus 108 al~r~gRf~~~i~i~~P~~~~r~~il~~~~ 137 (362)
++++ |+ ..+.|+.|+.++...+++...
T Consensus 154 ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 154 TLRS--RC-RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp HHHT--TS-EEEECCCCCHHHHHHHHHHHC
T ss_pred HHhh--cc-eeeeCCCCCHHHHHHHHHHhc
Confidence 9999 88 479999999999998887764
No 114
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.89 E-value=2e-05 Score=72.92 Aligned_cols=102 Identities=10% Similarity=0.005 Sum_probs=83.4
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHH
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQE 300 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~ 300 (362)
.++.+|++||.++.+++++.+ ||+..+.++.|+.+++..+++.++...+.. ++..++.+++.+.|. ..++.+++..
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~ 213 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRR 213 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHH
Confidence 368899999999999999998 999999999999999999999998765443 222466778877664 5788899988
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 301 AGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 301 a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
+...+...+...|+.+++..++....
T Consensus 214 ~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 214 VRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp HTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 87777666667899999988887654
No 115
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.83 E-value=6.3e-05 Score=69.95 Aligned_cols=105 Identities=17% Similarity=0.098 Sum_probs=79.8
Q ss_pred cCCeEEEEecCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC--------------------C
Q psy6770 221 IGNLQVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS--------------------D 275 (362)
Q Consensus 221 ~~~v~vi~aTn~~~-----~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~--------------------~ 275 (362)
..++++|+++|..+ .+++++++ ||+.++++++|+.+++.+|++.++...+.. -
T Consensus 148 ~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 225 (331)
T 2r44_A 148 DNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKV 225 (331)
T ss_dssp CSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccC
Confidence 34678888888433 38999999 999999999999999999999988653211 0
Q ss_pred CCC---HHHHhhC-------------------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 276 EVD---LEDYVAR-------------------PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 276 ~~~---~~~la~~-------------------~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
.++ ++.+++. ..|.|......+++.|...|...++..|+.+|+..++..+-.
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILN 299 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhH
Confidence 011 2233221 136799999999999988888889889999999999887654
No 116
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.78 E-value=8.3e-06 Score=82.32 Aligned_cols=123 Identities=21% Similarity=0.197 Sum_probs=74.4
Q ss_pred CcHHHHHHhhhCCcEEEE----echhhhhhhcCchH---HH-HHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHH
Q psy6770 1 YLLCTSFDTELVTAFIRV----VGSEFVQKYLGEGP---RM-VRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADRE 72 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v----~~s~l~~~~~gese---~~-l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~ 72 (362)
|+||+++|+.++..++.. ++..+......... .. -...+..| ..+|+||||||.+-+.
T Consensus 341 T~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~~----------- 406 (595)
T 3f9v_A 341 SQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRDE----------- 406 (595)
T ss_dssp HHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCSH-----------
T ss_pred HHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhhhCCHh-----------
Confidence 578999999998777653 22222222111100 00 00012222 3489999999987422
Q ss_pred HHHHHHHHHHhcc------CC--CCCCCeEEEEEcCCCC-------------CCCccccCCCcce-eEEEccCCCHHHHH
Q psy6770 73 VQRILLELLNQMD------GF--DQTTNVKVIMATNRAD-------------TLDPALLRPGRLD-RKIEFPLPDRRQKR 130 (362)
Q Consensus 73 ~~~~l~~lL~~ld------~l--~~~~~v~vi~tTn~~~-------------~ld~al~r~gRf~-~~i~i~~P~~~~r~ 130 (362)
....+.+.+.+-. +. ..+.++.+|+|||.++ .+++++++ ||| ..+..+.|+.+ ..
T Consensus 407 ~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~ 483 (595)
T 3f9v_A 407 DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DR 483 (595)
T ss_dssp HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HH
T ss_pred HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HH
Confidence 2334444443211 11 1135688999999886 89999999 998 55666778877 88
Q ss_pred HHHHHHHccC
Q psy6770 131 LVFSTITAKM 140 (362)
Q Consensus 131 ~il~~~~~~~ 140 (362)
.|.+..+...
T Consensus 484 ~i~~~il~~~ 493 (595)
T 3f9v_A 484 ELANYILDVH 493 (595)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHh
Confidence 8888777644
No 117
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.74 E-value=4.6e-05 Score=71.19 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=78.0
Q ss_pred CCeEEEEecCCCC-CCCccccCCCCcceeEEecCC-CHHHHHHHHHHHh-------------------------------
Q psy6770 222 GNLQVIMATNRAD-TLDPALLRPGRLDRKIEFPLP-DRRQKRLVFSTIT------------------------------- 268 (362)
Q Consensus 222 ~~v~vi~aTn~~~-~lD~a~~RpgRfd~~i~~~~P-~~~~r~~i~~~~l------------------------------- 268 (362)
.++++|++||..+ .+++++++ ||+.+++++.| +.+++.+|++..+
T Consensus 186 ~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 263 (350)
T 1g8p_A 186 ARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERL 263 (350)
T ss_dssp CCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhC
Confidence 3789999999744 89999999 99999999999 6788878886632
Q ss_pred ccCCCCCCCCHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 269 AKMNLSDEVDLEDYVARP---DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 269 ~~~~~~~~~~~~~la~~~---~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
..+.+.++ .++.|++.. .+-+...+.++++.|...|..+++..|+.+|+..++..+-..
T Consensus 264 ~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 264 PKVEAPNT-ALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp GGCBCCHH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred CCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 12222222 234444443 223679999999999999988888889999999998876543
No 118
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.73 E-value=0.00013 Score=65.49 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=87.4
Q ss_pred CcHHHHHHhhhC---CcEEEEechhhhhh-----hcCchHHH-------HHHHHHHHHHcCCeEEEeccccccccccCCC
Q psy6770 1 YLLCTSFDTELV---TAFIRVVGSEFVQK-----YLGEGPRM-------VRDVFRLAKENSPAIIFIDEIDAIATKRFDA 65 (362)
Q Consensus 1 slLakaiA~e~~---~~~~~v~~s~l~~~-----~~gese~~-------l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~ 65 (362)
|+||+++++.++ .+|+.++++.+... .+|..... ....|..+ .+.+|||||+|.+...
T Consensus 43 t~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~---- 115 (265)
T 2bjv_A 43 ELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM---- 115 (265)
T ss_dssp HHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH----
T ss_pred HHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH----
Confidence 478999999875 68999999876321 11210000 01122222 3589999999988431
Q ss_pred CCCCcHHHHHHHHHHHHhcc--CC----CCCCCeEEEEEcCCC-------CCCCccccCCCccee-EEEccCCCH--HHH
Q psy6770 66 QTGADREVQRILLELLNQMD--GF----DQTTNVKVIMATNRA-------DTLDPALLRPGRLDR-KIEFPLPDR--RQK 129 (362)
Q Consensus 66 ~~~~~~~~~~~l~~lL~~ld--~l----~~~~~v~vi~tTn~~-------~~ld~al~r~gRf~~-~i~i~~P~~--~~r 129 (362)
....+..+++.-. .. ....++.+|+|||.+ ..+++++.. ||.. .+.+|.... ++.
T Consensus 116 -------~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di 186 (265)
T 2bjv_A 116 -------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDI 186 (265)
T ss_dssp -------HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHH
T ss_pred -------HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHH
Confidence 2333444444311 00 112467899999974 246788888 8863 445444332 344
Q ss_pred HHHHHHHHcc----CCCCC--cCC---HHHHHhcCCCCcHhhHHHHHHHHHHhhc
Q psy6770 130 RLVFSTITAK----MNLSD--EVD---LEDYVARPDRISGADINAICQEVIMATN 175 (362)
Q Consensus 130 ~~il~~~~~~----~~~~~--~~d---l~~la~~t~g~s~~di~~l~~~a~~~~~ 175 (362)
..+++.++.. .+... .++ +..+....-.-...++.++++.++..+.
T Consensus 187 ~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~ 241 (265)
T 2bjv_A 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 (265)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 4454444432 22211 233 3334444323456688888888876553
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.71 E-value=5.2e-05 Score=66.51 Aligned_cols=110 Identities=11% Similarity=-0.008 Sum_probs=80.5
Q ss_pred hhhhhhhhhhccCCe-EEEEecCCCC---CCCccccCCCCcc--eeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHH
Q psy6770 210 TITAKMNFMLNIGNL-QVIMATNRAD---TLDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDY 282 (362)
Q Consensus 210 ~~l~~~~~~~~~~~v-~vi~aTn~~~---~lD~a~~RpgRfd--~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~l 282 (362)
.++..++...+.+.+ +|+.+++.++ .+++++.+ ||. ..+.++.|+.+++.++++.++...... ++-.++.+
T Consensus 125 ~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 202 (242)
T 3bos_A 125 AIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFL 202 (242)
T ss_dssp HHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345555555555555 5555555554 45688888 886 899999999999999999998754432 22236667
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 283 a~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
++.+.| +..++.+++..+...|..++ ..|+.+++.+++.
T Consensus 203 ~~~~~g-~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 203 LNRMAR-DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHTTT-CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHccC-CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 777766 78899999999988886555 5699999988864
No 120
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.69 E-value=2.2e-05 Score=72.13 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=77.6
Q ss_pred hhhhhhhhhhhhhhhhccCCeEEEEecCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCC
Q psy6770 204 KRLVFSTITAKMNFMLNIGNLQVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEV 277 (362)
Q Consensus 204 k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~~-----~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~ 277 (362)
...+++.++..|+.. ..++++|++||.++ .+||++.+ ||+.+++|+.|+.+++..|++.++.+.... ++-
T Consensus 152 ~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~ 227 (309)
T 3syl_A 152 GQEAIEILLQVMENN--RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE 227 (309)
T ss_dssp THHHHHHHHHHHHHC--TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHH
T ss_pred cHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHH
Confidence 345667777777753 35789999998764 36899999 999999999999999999999999876543 122
Q ss_pred CHHHHhhC-------CCCCCHHHHHHHHHHHHHHHHHh----cCCCCCHHHH
Q psy6770 278 DLEDYVAR-------PDRISGADINAICQEAGMHAVRE----NRYIVLPKDF 318 (362)
Q Consensus 278 ~~~~la~~-------~~g~sgadi~~~~~~a~~~a~~~----~~~~v~~~~~ 318 (362)
.++.+++. ...-+++++.+++..|...+... ....++.+++
T Consensus 228 ~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l 279 (309)
T 3syl_A 228 AETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARAL 279 (309)
T ss_dssp HHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHH
T ss_pred HHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 24445543 22233889999999998766543 2244455554
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.66 E-value=4.4e-05 Score=74.20 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=88.3
Q ss_pred hhhhhhhhhhhccCCeEEEEecCCCCC---CCccccCCCCcc--eeEEecCCCHHHHHHHHHHHhccC--CCCCCCCHHH
Q psy6770 209 STITAKMNFMLNIGNLQVIMATNRADT---LDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKM--NLSDEVDLED 281 (362)
Q Consensus 209 ~~~l~~~~~~~~~~~v~vi~aTn~~~~---lD~a~~RpgRfd--~~i~~~~P~~~~r~~i~~~~l~~~--~~~~~~~~~~ 281 (362)
..++..++.+.+.+..+||++++.|.. +++++++ ||+ ..+.++.|+.++|..+++..+... .+.+++ ++.
T Consensus 214 ~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~ 290 (440)
T 2z4s_A 214 TELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNF 290 (440)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHH
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHH
Confidence 345555666566566666766665665 8899999 997 889999999999999999988643 334333 777
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 282 la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
|+..+.| +.+++.+++..+...|...+ .+|+.+++.+++....+
T Consensus 291 la~~~~g-n~R~l~~~L~~~~~~a~~~~-~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 291 VAENVDD-NLRRLRGAIIKLLVYKETTG-KEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHHHCCS-CHHHHHHHHHHHHHHHHHSS-SCCCHHHHHHHTSTTTC
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhh
Confidence 8888765 89999999999988887655 47999999999988774
No 122
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.65 E-value=4.1e-05 Score=70.70 Aligned_cols=157 Identities=15% Similarity=0.225 Sum_probs=85.5
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhh-----hcCch-------HHHHHHHHHHHHHcCCeEEEeccccccccccCCC
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQK-----YLGEG-------PRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDA 65 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~-----~~ges-------e~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~ 65 (362)
|++|++|++.+ +.+|+.++++.+... .+|.. .......|+.|. +++|||||||.+...
T Consensus 39 t~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~---- 111 (304)
T 1ojl_A 39 ELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL---- 111 (304)
T ss_dssp HHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH----
T ss_pred HHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH----
Confidence 47899999865 679999998765321 12210 001122344443 489999999988431
Q ss_pred CCCCcHHHHHHHHHHHHhcc--CC----CCCCCeEEEEEcCCC-------CCCCccccCCCcceeEEEccCCCHHH----
Q psy6770 66 QTGADREVQRILLELLNQMD--GF----DQTTNVKVIMATNRA-------DTLDPALLRPGRLDRKIEFPLPDRRQ---- 128 (362)
Q Consensus 66 ~~~~~~~~~~~l~~lL~~ld--~l----~~~~~v~vi~tTn~~-------~~ld~al~r~gRf~~~i~i~~P~~~~---- 128 (362)
....+..+++... .+ ....++.+|++||.+ ..+++.+.. ||. .+.+.+|...+
T Consensus 112 -------~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~ed 181 (304)
T 1ojl_A 112 -------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRRED 181 (304)
T ss_dssp -------HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGG
T ss_pred -------HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhh
Confidence 2233444443321 00 012458899999975 234556666 664 44555555444
Q ss_pred HHHHHHHHHccC----CCC-CcCC---HHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 129 KRLVFSTITAKM----NLS-DEVD---LEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 129 r~~il~~~~~~~----~~~-~~~d---l~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
...+++.++... +.. ..++ +..+....-.-...++.+++..++..+
T Consensus 182 i~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 182 IPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 444665554432 111 1222 444554432235567888888777654
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.64 E-value=0.00016 Score=68.20 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=84.4
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCC---CCCCccccCCCCcce-eEEecCCCHHHHHHHHHHHhcc----CCCCCCCCH
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRA---DTLDPALLRPGRLDR-KIEFPLPDRRQKRLVFSTITAK----MNLSDEVDL 279 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~---~~lD~a~~RpgRfd~-~i~~~~P~~~~r~~i~~~~l~~----~~~~~~~~~ 279 (362)
+..++..+.......++.+|++||.+ +.+++++.+ ||.. .++++.|+.++...+++..+.. ..+. +-.+
T Consensus 152 l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~ 228 (387)
T 2v1u_A 152 LYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVV 228 (387)
T ss_dssp HHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHH
T ss_pred HHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHH
Confidence 34444433332214678999999998 788999999 9986 8999999999999999998763 2222 2236
Q ss_pred HHHhhCCC---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 280 EDYVARPD---RISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 280 ~~la~~~~---g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
+.+++.+. | ....+.++|..|+..|..++...|+.+|+..++.....
T Consensus 229 ~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 229 PLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 66776655 4 35677789999998888878889999999999887643
No 124
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.63 E-value=0.00015 Score=83.84 Aligned_cols=125 Identities=12% Similarity=0.248 Sum_probs=85.2
Q ss_pred CcHH-HHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHH-H--------------HcCCeEEEeccccccccccCC
Q psy6770 1 YLLC-TSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLA-K--------------ENSPAIIFIDEIDAIATKRFD 64 (362)
Q Consensus 1 slLa-kaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a-~--------------~~~P~II~iDeiD~l~~~r~~ 64 (362)
|++| ++++...+..++.++.+...+. ..+...++.. . ..+++||||||++.....+.
T Consensus 1281 T~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~y- 1353 (2695)
T 4akg_A 1281 TMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKY- 1353 (2695)
T ss_dssp HHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSS-
T ss_pred HHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEEEeccccccccccc-
Confidence 4677 6677777889999988766532 2344444332 1 12347999999996433321
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCCC--------CCCeEEEEEcCCCC-----CCCccccCCCcceeEEEccCCCHHHHHH
Q psy6770 65 AQTGADREVQRILLELLNQMDGFDQ--------TTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRL 131 (362)
Q Consensus 65 ~~~~~~~~~~~~l~~lL~~ld~l~~--------~~~v~vi~tTn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~ 131 (362)
+. ......+.++++. .++.. -.++.+|+|+|.|+ .++++++| || ..++++.|+.+++..
T Consensus 1354 ---g~-q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~ 1425 (2695)
T 4akg_A 1354 ---GS-QNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQ 1425 (2695)
T ss_dssp ---SC-CHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHH
T ss_pred ---Cc-hhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHH
Confidence 11 2234667777642 22211 13589999999995 89999999 99 889999999999999
Q ss_pred HHHHHHccC
Q psy6770 132 VFSTITAKM 140 (362)
Q Consensus 132 il~~~~~~~ 140 (362)
|++.+++..
T Consensus 1426 I~~~il~~~ 1434 (2695)
T 4akg_A 1426 IYEIYYKAI 1434 (2695)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887643
No 125
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.60 E-value=0.00019 Score=66.20 Aligned_cols=110 Identities=8% Similarity=0.128 Sum_probs=81.3
Q ss_pred cHHHHHHhhh------CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHc----CCeEEEeccccccccccCCCCCCCcH
Q psy6770 2 LLCTSFDTEL------VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN----SPAIIFIDEIDAIATKRFDAQTGADR 71 (362)
Q Consensus 2 lLakaiA~e~------~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~----~P~II~iDeiD~l~~~r~~~~~~~~~ 71 (362)
.+|+++|+++ ..+++.+++++- .-+...++.+.+.+... ..-|++|||+|.+..
T Consensus 33 t~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~----------- 96 (305)
T 2gno_A 33 EVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ----------- 96 (305)
T ss_dssp HHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------
T ss_pred HHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------
Confidence 4688888764 457888887531 12345677888877543 236999999998842
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHH
Q psy6770 72 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 137 (362)
Q Consensus 72 ~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~ 137 (362)
...+.||..|+. +.+++++|.+|+.|+.+.+++++ | .++|+.|+.++....++..+
T Consensus 97 ---~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 97 ---QAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ---HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 224556666663 45678888888999999999999 8 89999999999888887766
No 126
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.59 E-value=0.00024 Score=67.64 Aligned_cols=163 Identities=10% Similarity=0.059 Sum_probs=94.9
Q ss_pred CcHHHHHHhhh---------CCcEEEEechh------hhhhh----------cCch-HHHHHHHHHHHH-HcCCeEEEec
Q psy6770 1 YLLCTSFDTEL---------VTAFIRVVGSE------FVQKY----------LGEG-PRMVRDVFRLAK-ENSPAIIFID 53 (362)
Q Consensus 1 slLakaiA~e~---------~~~~~~v~~s~------l~~~~----------~ges-e~~l~~~F~~a~-~~~P~II~iD 53 (362)
|.|++++++++ +..++.+++.. +.... .|.+ ...++.+.+... ...|.+|+||
T Consensus 66 T~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlD 145 (412)
T 1w5s_A 66 TTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILD 145 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 46788888776 66788888642 11110 0211 223344444443 3458999999
Q ss_pred cccccccccCCCCCCCcHHHHHHHHHHHHhccCCC-CC--CCeEEEEEcCCCC---CCC---ccccCCCcceeEEEccCC
Q psy6770 54 EIDAIATKRFDAQTGADREVQRILLELLNQMDGFD-QT--TNVKVIMATNRAD---TLD---PALLRPGRLDRKIEFPLP 124 (362)
Q Consensus 54 eiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~-~~--~~v~vi~tTn~~~---~ld---~al~r~gRf~~~i~i~~P 124 (362)
|+|.+...+. .+. ..+..++..+..+. .. .++.+|++||.++ .++ +.+.+ ||...+.++++
T Consensus 146 e~~~l~~~~~-----~~~---~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l 215 (412)
T 1w5s_A 146 EFQSMLSSPR-----IAA---EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAY 215 (412)
T ss_dssp STHHHHSCTT-----SCH---HHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCC
T ss_pred CHHHHhhccC-----cch---HHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCC
Confidence 9999864310 111 23333333333221 13 6788888888665 334 55666 66666999999
Q ss_pred CHHHHHHHHHHHHccCCC---CCcCCHHHHHhcCC------CCcHhhHHHHHHHHHHhh
Q psy6770 125 DRRQKRLVFSTITAKMNL---SDEVDLEDYVARPD------RISGADINAICQEVIMAT 174 (362)
Q Consensus 125 ~~~~r~~il~~~~~~~~~---~~~~dl~~la~~t~------g~s~~di~~l~~~a~~~~ 174 (362)
+.++..+++...+..... .++..+..++..+. |. +..+..++..+...+
T Consensus 216 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~-p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 216 KSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS-ARRAIVALKMACEMA 273 (412)
T ss_dssp CHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHHHH
Confidence 999999999876653211 11223455666666 53 556667777665543
No 127
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.55 E-value=0.00029 Score=65.73 Aligned_cols=102 Identities=11% Similarity=0.050 Sum_probs=84.8
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCCCCCHHHHHHHHHHH
Q psy6770 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEA 301 (362)
Q Consensus 223 ~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~g~sgadi~~~~~~a 301 (362)
.+.++++||.++.|++++++ ||...+.+++|+.++..++++......... ++-.+..+++.+.|. .+++.++++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHH
Confidence 45677899999999999999 999999999999999999999987655433 222367788888874 57888999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 302 GMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 302 ~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
...|...+...|+.+++.+++.....
T Consensus 227 ~~~a~~~~~~~It~~~v~~al~~~~~ 252 (334)
T 1in4_A 227 RDMLTVVKADRINTDIVLKTMEVLNI 252 (334)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhCC
Confidence 88888777788999999999998764
No 128
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.54 E-value=0.00018 Score=72.52 Aligned_cols=104 Identities=19% Similarity=0.098 Sum_probs=79.3
Q ss_pred CCeEEEEecCCCC-------------CCCccccCCCCcce-eEEecCCCHHHHHHHHHHHhccCCC-------C------
Q psy6770 222 GNLQVIMATNRAD-------------TLDPALLRPGRLDR-KIEFPLPDRRQKRLVFSTITAKMNL-------S------ 274 (362)
Q Consensus 222 ~~v~vi~aTn~~~-------------~lD~a~~RpgRfd~-~i~~~~P~~~~r~~i~~~~l~~~~~-------~------ 274 (362)
.++.||+|||.++ .|++|+++ |||. .+..++|+.+ ...|.+.++..... .
T Consensus 433 ~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~ 509 (595)
T 3f9v_A 433 ARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRK 509 (595)
T ss_dssp CCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHH
T ss_pred CceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHH
Confidence 3678999999987 89999999 9995 5667788888 88888887754221 0
Q ss_pred -------------CCCCHHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 275 -------------DEVDLEDYVAR--------------PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 275 -------------~~~~~~~la~~--------------~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
++...+.|++. +.+.|.+.+.++++-|.-.|...++..|+.+|+..|+.-+..
T Consensus 510 ~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 510 YIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRL 589 (595)
T ss_dssp HHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 11112223322 357899999999999999998889999999999999987665
Q ss_pred c
Q psy6770 328 M 328 (362)
Q Consensus 328 ~ 328 (362)
+
T Consensus 590 s 590 (595)
T 3f9v_A 590 F 590 (595)
T ss_dssp H
T ss_pred H
Confidence 5
No 129
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.54 E-value=8.4e-05 Score=69.13 Aligned_cols=84 Identities=31% Similarity=0.470 Sum_probs=76.9
Q ss_pred CeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHH
Q psy6770 92 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEV 170 (362)
Q Consensus 92 ~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a 170 (362)
+++||++||.|+.+|++++| ||+..+++++|+.++|..|++.+++..+.. .+.++..++..|.||+++||..+|++|
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 47899999999999999999 999999999999999999999999877653 556899999999999999999999999
Q ss_pred HHhhccc
Q psy6770 171 IMATNRA 177 (362)
Q Consensus 171 ~~~~~r~ 177 (362)
.+.+.+.
T Consensus 227 ~~~a~r~ 233 (322)
T 1xwi_A 227 LMQPVRK 233 (322)
T ss_dssp HTHHHHH
T ss_pred HHHHHHH
Confidence 9887665
No 130
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.51 E-value=0.00017 Score=62.85 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=79.3
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.++..++.. ..++.+|++||.++.+++++.+ |+ ..+.++.|+.++..++++.++.+.... ++-.++.+++.+
T Consensus 143 ~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 217 (250)
T 1njg_A 143 FNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 217 (250)
T ss_dssp HHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence 34455544432 3578999999999999999988 85 689999999999999999998754332 222467788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~ 322 (362)
.| +...+.++|..|... +...|+.+++.+++
T Consensus 218 ~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 218 EG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp TT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred CC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 87 788888888887533 34589999998775
No 131
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.50 E-value=6.2e-05 Score=73.27 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=75.3
Q ss_pred cCCeEEEEec--CCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCC-----C---CCCCHHHHhhCCCCCC
Q psy6770 221 IGNLQVIMAT--NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL-----S---DEVDLEDYVARPDRIS 290 (362)
Q Consensus 221 ~~~v~vi~aT--n~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~-----~---~~~~~~~la~~~~g~s 290 (362)
.+.+++|++| |....+++++++ |+. .+.+..|+.++...+++.++.+... . ++-.++.|++.+.| +
T Consensus 132 ~~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d 207 (447)
T 3pvs_A 132 DGTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-D 207 (447)
T ss_dssp TTSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-C
T ss_pred cCceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-C
Confidence 3567888877 555689999999 987 6779999999999999999876221 1 12235667776544 5
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHhCchH
Q psy6770 291 GADINAICQEAGMHAVRE--NRYIVLPKDFEKGYKKCAGMHA 330 (362)
Q Consensus 291 gadi~~~~~~a~~~a~~~--~~~~v~~~~~~~a~~~~~~~~~ 330 (362)
..++.+++..+...+... +...|+.+++.+++.......+
T Consensus 208 ~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~d 249 (447)
T 3pvs_A 208 ARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFD 249 (447)
T ss_dssp HHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC--
T ss_pred HHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccC
Confidence 677778888877765422 3457999999999876655433
No 132
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.00052 Score=64.06 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=76.9
Q ss_pred CcHHHHHHhhhC-----CcEEEEechhhhhhhcCchHHHHHHHHHHHHH------cCCeEEEeccccccccccCCCCCCC
Q psy6770 1 YLLCTSFDTELV-----TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE------NSPAIIFIDEIDAIATKRFDAQTGA 69 (362)
Q Consensus 1 slLakaiA~e~~-----~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~------~~P~II~iDeiD~l~~~r~~~~~~~ 69 (362)
|++++++|+++. ..++.++.++.. | ...++........ .++.|++|||+|.+...
T Consensus 60 Ttla~~la~~l~~~~~~~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------- 125 (340)
T 1sxj_C 60 TSTIVALAREIYGKNYSNMVLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------- 125 (340)
T ss_dssp HHHHHHHHHHHHTTSHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH--------
T ss_pred HHHHHHHHHHHcCCCccceEEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH--------
Confidence 468899998864 347777776531 1 2334443333221 13689999999987421
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccC
Q psy6770 70 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 140 (362)
Q Consensus 70 ~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~ 140 (362)
....+..++.+ ....+.+|.+||.+..+.+++++ |+. .+.++.++.++....+...+...
T Consensus 126 ---~~~~L~~~le~-----~~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~ 185 (340)
T 1sxj_C 126 ---AQNALRRVIER-----YTKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHE 185 (340)
T ss_dssp ---HHHHHHHHHHH-----TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHhc-----CCCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHc
Confidence 12233333332 23466778889999999999999 985 78999999999888888877543
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.38 E-value=0.00025 Score=60.91 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=73.1
Q ss_pred hhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCC
Q psy6770 209 STITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPD 287 (362)
Q Consensus 209 ~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~ 287 (362)
+.++..++.. ..++.+|++||.++.+++++.+ ||. .+.++.|+.++...+++.++.+.+.. ++-.++.+++.+.
T Consensus 120 ~~l~~~l~~~--~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 194 (226)
T 2chg_A 120 AALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISG 194 (226)
T ss_dssp HHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHhc--CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 3344444443 3467889999999999999999 998 89999999999999999988644332 2223566776655
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 288 RISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 288 g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
| ....+.+++..++..+ ..|+.+|+.+++.
T Consensus 195 g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 195 G-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp T-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 4 3444455555554432 6899999998875
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.30 E-value=0.00036 Score=65.81 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=77.1
Q ss_pred CCeEEEEecCCC---CCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc----CCCCCCCCHHHHhhCCCCCCH--H
Q psy6770 222 GNLQVIMATNRA---DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK----MNLSDEVDLEDYVARPDRISG--A 292 (362)
Q Consensus 222 ~~v~vi~aTn~~---~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~----~~~~~~~~~~~la~~~~g~sg--a 292 (362)
.++.+|++||.+ +.+++++.+ ||...++|+.|+.++..++++.++.. ..+. +-.++.+++.+.+.+| .
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHHHHTTCCCHH
T ss_pred cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHHHHhccCCHH
Confidence 678999999988 789999999 99889999999999999999998863 2222 2235667776653333 3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
.+.++|..|...|. +...|+.+|+..++....
T Consensus 240 ~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 240 KAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 55678888877765 557899999999988765
No 135
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.26 E-value=0.00026 Score=64.69 Aligned_cols=118 Identities=9% Similarity=0.083 Sum_probs=80.1
Q ss_pred hhhhhhhhhhhhhh--------ccCCeEEEEe----cCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHH----H--
Q psy6770 206 LVFSTITAKMNFML--------NIGNLQVIMA----TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST----I-- 267 (362)
Q Consensus 206 ~~~~~~l~~~~~~~--------~~~~v~vi~a----Tn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~----~-- 267 (362)
.+.+.++..|++.. ...++++|++ ++.++.+++++++ ||+..++|+.|+.+++.+|++. +
T Consensus 143 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~ 220 (310)
T 1ofh_A 143 GVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTE 220 (310)
T ss_dssp HHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHH
T ss_pred HHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHH
Confidence 34566666666431 3357888888 6788999999998 9999999999999999999983 1
Q ss_pred -----hccCCCC---CCCCHHHHhhCC-------CCCCHHHHHHHHHHHHHHHHHhcC-----C-CCCHHHHHHHHHHH
Q psy6770 268 -----TAKMNLS---DEVDLEDYVARP-------DRISGADINAICQEAGMHAVRENR-----Y-IVLPKDFEKGYKKC 325 (362)
Q Consensus 268 -----l~~~~~~---~~~~~~~la~~~-------~g~sgadi~~~~~~a~~~a~~~~~-----~-~v~~~~~~~a~~~~ 325 (362)
+...... ++-.++.|++.+ .+....++.++|..+...+..+.. . .|+.+|+..++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 221 QYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 1111111 122355566654 256788899998887655443221 1 38888888887653
No 136
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.25 E-value=0.00027 Score=69.64 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=67.4
Q ss_pred EEEEecCCCCC---CCccccCCCCcceeEEecCCCH-HHHHHHHHHHhcc-------------------------CCCCC
Q psy6770 225 QVIMATNRADT---LDPALLRPGRLDRKIEFPLPDR-RQKRLVFSTITAK-------------------------MNLSD 275 (362)
Q Consensus 225 ~vi~aTn~~~~---lD~a~~RpgRfd~~i~~~~P~~-~~r~~i~~~~l~~-------------------------~~~~~ 275 (362)
++|+|||.+.. ..+|+++ ||..++++++|+. +++..|++.+... +.+++
T Consensus 151 ~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d 228 (500)
T 3nbx_X 151 LLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPD 228 (500)
T ss_dssp EEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCH
T ss_pred hhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCch
Confidence 56888885322 3459999 9999999999987 7788888875431 11111
Q ss_pred CCCHHHHhh---------CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy6770 276 EVDLEDYVA---------RPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319 (362)
Q Consensus 276 ~~~~~~la~---------~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~ 319 (362)
++ ++.+++ ...|.|++.+..+++.|.-.|...++..|+++|+.
T Consensus 229 ~v-~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 229 HV-FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HH-HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HH-HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 11 222322 24689999999999999999999999999999988
No 137
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.25 E-value=0.00015 Score=58.97 Aligned_cols=76 Identities=12% Similarity=0.266 Sum_probs=53.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL 80 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~l 80 (362)
|++|++++++.+ +|+.++++.+...+ ...+|+.+. +++|||||+|.+... ....+..+
T Consensus 41 t~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~~~-----------~q~~Ll~~ 98 (143)
T 3co5_A 41 ETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYSRN-----------IQTGITFI 98 (143)
T ss_dssp HHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCCHH-----------HHHHHHHH
T ss_pred HHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCCHH-----------HHHHHHHH
Confidence 468999999988 99999999876544 455666554 589999999988432 22334445
Q ss_pred HHhccCCCCCCCeEEEEEcCCC
Q psy6770 81 LNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 81 L~~ld~l~~~~~v~vi~tTn~~ 102 (362)
++.. ...++.+|+|||.+
T Consensus 99 l~~~----~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 99 IGKA----ERCRVRVIASCSYA 116 (143)
T ss_dssp HHHH----TTTTCEEEEEEEEC
T ss_pred HHhC----CCCCEEEEEecCCC
Confidence 4432 23567788888865
No 138
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.23 E-value=0.00026 Score=69.26 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=71.8
Q ss_pred ccCCeEEEEecCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCC--C---CCCCHHHHhhCC---
Q psy6770 220 NIGNLQVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNL--S---DEVDLEDYVARP--- 286 (362)
Q Consensus 220 ~~~~v~vi~aTn~~~-----~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~--~---~~~~~~~la~~~--- 286 (362)
+.+++.+|+|||.+. .+|+++.| ||.. |.|+.|+.+++..|++.++.++.. + ++..+..++..+
T Consensus 288 ~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~ 364 (468)
T 3pxg_A 288 ARGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (468)
T ss_dssp TSSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred cCCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999998 69999999 9985 999999999999999998876321 1 122244455443
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHh
Q psy6770 287 --DRISGADINAICQEAGMHAVRE-NRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 287 --~g~sgadi~~~~~~a~~~a~~~-~~~~v~~~~~~~a~~~~~ 326 (362)
..+.+.....++.+|+..+..+ ...|-...++++.+..+.
T Consensus 365 ~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~ 407 (468)
T 3pxg_A 365 ISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVR 407 (468)
T ss_dssp SCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHH
T ss_pred hccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 3344446667777776554433 334556666666665544
No 139
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.10 E-value=0.00033 Score=68.04 Aligned_cols=84 Identities=31% Similarity=0.476 Sum_probs=76.7
Q ss_pred CeEEEEEcCCCCCCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHH
Q psy6770 92 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEV 170 (362)
Q Consensus 92 ~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a 170 (362)
+++||+|||.|+.+|++++| ||+..+++++|+.++|..||+.++...+.. .+.++..++..+.||+++||..+|++|
T Consensus 271 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 47899999999999999999 999999999999999999999999876542 556899999999999999999999999
Q ss_pred HHhhccc
Q psy6770 171 IMATNRA 177 (362)
Q Consensus 171 ~~~~~r~ 177 (362)
++.+.+.
T Consensus 349 ~~~a~r~ 355 (444)
T 2zan_A 349 LMQPVRK 355 (444)
T ss_dssp HTHHHHH
T ss_pred HHHHHHH
Confidence 9887765
No 140
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.08 E-value=0.00035 Score=56.78 Aligned_cols=76 Identities=11% Similarity=0.070 Sum_probs=50.8
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|++|++|++.. +.+|+ ++++.+.+. ......|+.+ .+++|||||+|.+... ....+
T Consensus 38 t~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~~~-----------~q~~L 96 (145)
T 3n70_A 38 MTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLTRE-----------QQYHL 96 (145)
T ss_dssp HHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSCHH-----------HHHHH
T ss_pred HHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCCHH-----------HHHHH
Confidence 47899999987 78999 999887654 2234455555 3489999999988432 12333
Q ss_pred HHHHHhccCCCCCCCeEEEEEcCCC
Q psy6770 78 LELLNQMDGFDQTTNVKVIMATNRA 102 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v~vi~tTn~~ 102 (362)
..++ .. ...++.+|+|||.+
T Consensus 97 l~~l---~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 97 VQLQ---SQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp HHHH---HS--SSCSSCEEEEESSC
T ss_pred HHHH---hh--cCCCEEEEEECCcC
Confidence 3333 32 23467788999874
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.04 E-value=0.0014 Score=61.41 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=82.2
Q ss_pred hhhhhhhhhhhhhccCCeEEEEecCCC---CCCCccccCCCCcc-eeEEecCCCHHHHHHHHHHHhcc----CCCCCCCC
Q psy6770 207 VFSTITAKMNFMLNIGNLQVIMATNRA---DTLDPALLRPGRLD-RKIEFPLPDRRQKRLVFSTITAK----MNLSDEVD 278 (362)
Q Consensus 207 ~~~~~l~~~~~~~~~~~v~vi~aTn~~---~~lD~a~~RpgRfd-~~i~~~~P~~~~r~~i~~~~l~~----~~~~~~~~ 278 (362)
++..++..++.. ...++.+|++||.+ +.+++.+.+ ||. ..+.++.++.++..++++..+.. ..+.+ -.
T Consensus 148 ~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~ 223 (386)
T 2qby_A 148 ILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPD-NV 223 (386)
T ss_dssp HHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCH-HH
T ss_pred HHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCH-HH
Confidence 344555444433 34678999999987 568888888 886 58999999999999999987753 12221 12
Q ss_pred HHHHhhCCC---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 279 LEDYVARPD---RISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 279 ~~~la~~~~---g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
++.+++.+. | +...+.++|..|+..+..++...|+.+|+..++....+
T Consensus 224 ~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 224 IKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 445665554 4 34566679999998888778889999999988877653
No 142
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.88 E-value=0.00019 Score=64.75 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=68.6
Q ss_pred hhhhhhhhhhhhhh-ccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh
Q psy6770 206 LVFSTITAKMNFML-NIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVA 284 (362)
Q Consensus 206 ~~~~~~l~~~~~~~-~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~ 284 (362)
.+++.+...+++.. ...++++|++||.++.+|++.++ +||+..|++|.++. |.+|.+.+.....+ ++.++..+++
T Consensus 149 ~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~ 224 (272)
T 1d2n_A 149 LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQ 224 (272)
T ss_dssp HHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh-cccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34555555555543 23468899999999999995444 49999988865544 34444443333223 2345777888
Q ss_pred CCCCC----CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 285 RPDRI----SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 285 ~~~g~----sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
.+.|+ +-.++.+++..|...+ .....+++.+++.....+
T Consensus 225 ~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 225 QVKGKKVWIGIKKLLMLIEMSLQMD-----PEYRVRKFLALLREEGAS 267 (272)
T ss_dssp HHTTSEEEECHHHHHHHHHHHTTSC-----GGGHHHHHHHHHHHTSCC
T ss_pred HhcCCCccccHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHHcCCc
Confidence 88887 4555555555543322 233556666666655443
No 143
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.84 E-value=0.001 Score=61.43 Aligned_cols=110 Identities=9% Similarity=0.116 Sum_probs=76.6
Q ss_pred hhhhhhhhhhccCCeEEEEecCCCC---CCCccccCCCCcc--eeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHh
Q psy6770 210 TITAKMNFMLNIGNLQVIMATNRAD---TLDPALLRPGRLD--RKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYV 283 (362)
Q Consensus 210 ~~l~~~~~~~~~~~v~vi~aTn~~~---~lD~a~~RpgRfd--~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la 283 (362)
.++..++...+.+..+|++++|.|+ .+++++.+ ||+ ..+.++. +.++|..+++.++...++. ++..++.|+
T Consensus 119 ~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~ 195 (324)
T 1l8q_A 119 EFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLL 195 (324)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3445555555556678888888777 68999999 997 6788888 9999999999998754432 222367788
Q ss_pred hCCCCCCHHHHHHHHHHHHHH---HHH-hcCCCC-CHHHHHHHHHH
Q psy6770 284 ARPDRISGADINAICQEAGMH---AVR-ENRYIV-LPKDFEKGYKK 324 (362)
Q Consensus 284 ~~~~g~sgadi~~~~~~a~~~---a~~-~~~~~v-~~~~~~~a~~~ 324 (362)
+.+ -+.+++.+++..+... ++. .+...| +.+++.+++..
T Consensus 196 ~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 196 ENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHH
Confidence 877 4678888888877655 111 223456 66777766654
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.81 E-value=0.0023 Score=60.14 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=86.6
Q ss_pred hhhhhhhhhhhhc--cCCeEEEEecCCC---CCCCccccCCCCcce-eEEecCCCHHHHHHHHHHHhcc----CCCCCCC
Q psy6770 208 FSTITAKMNFMLN--IGNLQVIMATNRA---DTLDPALLRPGRLDR-KIEFPLPDRRQKRLVFSTITAK----MNLSDEV 277 (362)
Q Consensus 208 ~~~~l~~~~~~~~--~~~v~vi~aTn~~---~~lD~a~~RpgRfd~-~i~~~~P~~~~r~~i~~~~l~~----~~~~~~~ 277 (362)
...++..+..+.. ..++.+|++||.+ +.+++.+.+ ||.. .+.|+.++.++..++++..+.. ..+ ++-
T Consensus 142 ~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~-~~~ 218 (389)
T 1fnn_A 142 LSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY-SED 218 (389)
T ss_dssp HHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS-CHH
T ss_pred HHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC-CHH
Confidence 4445444444332 2578899999988 678888888 8886 8999999999999999988754 112 222
Q ss_pred CHHHHhhCCCCC--------CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 278 DLEDYVARPDRI--------SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 278 ~~~~la~~~~g~--------sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
.++.+++.+.+. ....+.++|..|+..|..++...++.+++..++.....
T Consensus 219 ~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 219 ILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp HHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh
Confidence 466677777422 35678889999999888888888999999998887654
No 145
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.61 E-value=0.00068 Score=62.65 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=60.8
Q ss_pred CcHHHHHHhhhC--CcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHH
Q psy6770 1 YLLCTSFDTELV--TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILL 78 (362)
Q Consensus 1 slLakaiA~e~~--~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~ 78 (362)
|.||.++|.+.| +.|+.+..++.++.+..+.+..+..+++.+.... +|+||+++.+.....+..... ...+.+.
T Consensus 137 TtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G--~v~~~lr 212 (331)
T 2vhj_A 137 TPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSG--GISRGAF 212 (331)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-------------CCHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccc--hHHHHHH
Confidence 468888887655 4566663333344444566777888888777665 999999999976543211100 0123345
Q ss_pred HHHHhccCCCCCCCeEEEEEcCCCCCCCccc
Q psy6770 79 ELLNQMDGFDQTTNVKVIMATNRADTLDPAL 109 (362)
Q Consensus 79 ~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al 109 (362)
+++..|.++....++.+|+++| +...|+++
T Consensus 213 qlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 213 DLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp HHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred HHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 5555554433344677888888 66677665
No 146
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.55 E-value=0.00076 Score=61.70 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=63.4
Q ss_pred CCeEEEEecCC--------------------------CCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC----
Q psy6770 222 GNLQVIMATNR--------------------------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM---- 271 (362)
Q Consensus 222 ~~v~vi~aTn~--------------------------~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~---- 271 (362)
.++++|++||. ...++|+++. ||+..+.++.|+.+++..|++.++.+.
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 37889999999 5578999998 999999999999999999999988542
Q ss_pred ---CCC---CCCCHHHHhhCCC--CCCHHHHHHHHHHHHHHHHH
Q psy6770 272 ---NLS---DEVDLEDYVARPD--RISGADINAICQEAGMHAVR 307 (362)
Q Consensus 272 ---~~~---~~~~~~~la~~~~--g~sgadi~~~~~~a~~~a~~ 307 (362)
... ++-.++.|++... ..++.+|+++|.++...++.
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHH
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHH
Confidence 111 1223555666544 56788899988888776543
No 147
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.0067 Score=56.25 Aligned_cols=110 Identities=15% Similarity=0.035 Sum_probs=75.8
Q ss_pred hhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCC
Q psy6770 209 STITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPD 287 (362)
Q Consensus 209 ~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~ 287 (362)
+.++..|+... .++.+|++||.++.+++++.+ |+. .+.++.|+.++...+++..+.+..+. ++-.++.+++.+.
T Consensus 151 ~~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 151 SALRRTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISA 225 (353)
T ss_dssp HHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTS
T ss_pred HHHHHHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 44555555443 356777789999999999999 987 88999999999999999988654332 2234677888777
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHH
Q psy6770 288 RISGADINAICQEAGMHAVRENRY-IVLPKDFEKGYKK 324 (362)
Q Consensus 288 g~sgadi~~~~~~a~~~a~~~~~~-~v~~~~~~~a~~~ 324 (362)
|. ...+.+++..++..+-+.+.. .|+.+++.+++..
T Consensus 226 G~-~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 226 GD-LRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262 (353)
T ss_dssp SC-HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTC
T ss_pred CC-HHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCC
Confidence 64 444455555555554333222 7899998877653
No 148
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.31 E-value=0.024 Score=52.21 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=70.8
Q ss_pred HHHHHHHHHHc--CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC---------
Q psy6770 35 VRDVFRLAKEN--SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD--------- 103 (362)
Q Consensus 35 l~~~F~~a~~~--~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~--------- 103 (362)
+..+++..... +|.+|+|||++.+.... + ......+..+++.. .++.+|.|++...
T Consensus 124 ~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~----~---~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~ 190 (357)
T 2fna_A 124 FANLLESFEQASKDNVIIVLDEAQELVKLR----G---VNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVE 190 (357)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETGGGGGGCT----T---CCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCCCCeEEEEECHHHhhccC----c---hhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhcc
Confidence 45566555543 48999999999986421 0 11124445554331 3566666665432
Q ss_pred CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcHhhHHHHHHH
Q psy6770 104 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169 (362)
Q Consensus 104 ~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~~di~~l~~~ 169 (362)
.....+ .||+...+.+++.+.++..+++...+...+...+ +...+...+.|+.. -+..++..
T Consensus 191 ~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 191 DPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp CTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHHH
T ss_pred CCCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHHH
Confidence 111222 2477788999999999999999887754333322 34777888888654 35555443
No 149
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.26 E-value=0.0027 Score=54.66 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=49.9
Q ss_pred cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccCC
Q psy6770 45 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 124 (362)
Q Consensus 45 ~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~P 124 (362)
..++||+|||++.+++.+...... .+ ++..+.. ......-+|.+|+.+..+|.+++. |++..++++.|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~-----~r----ll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI-----PE----NVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC-----CH----HHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccchh-----HH----HHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 346999999999998766322111 12 3333332 234466778888889999999998 99999999876
Q ss_pred CHH
Q psy6770 125 DRR 127 (362)
Q Consensus 125 ~~~ 127 (362)
...
T Consensus 154 ~~~ 156 (199)
T 2r2a_A 154 KMG 156 (199)
T ss_dssp SSC
T ss_pred ccC
Confidence 543
No 150
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.19 E-value=0.0044 Score=50.60 Aligned_cols=90 Identities=9% Similarity=0.187 Sum_probs=54.2
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHH
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRIL 77 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l 77 (362)
|.|++++++.+ |...+.++..++... +...+|.+++|||++.+.... ...+
T Consensus 50 TtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~-----------~~~l 103 (149)
T 2kjq_A 50 SHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE-----------QALL 103 (149)
T ss_dssp CHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH-----------HHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH-----------HHHH
Confidence 67899999988 777888888777543 113468999999998753221 2334
Q ss_pred HHHHHhccCCCCCCCeEEEEEcC-CCCCCC--ccccCCCcceeEEEc
Q psy6770 78 LELLNQMDGFDQTTNVKVIMATN-RADTLD--PALLRPGRLDRKIEF 121 (362)
Q Consensus 78 ~~lL~~ld~l~~~~~v~vi~tTn-~~~~ld--~al~r~gRf~~~i~i 121 (362)
..+++.+. ..+..++|.||| .|..+. +.+.+ |+..-..+
T Consensus 104 ~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 104 FSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp HHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred HHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 44444332 122332444555 455443 66666 76544443
No 151
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.14 E-value=0.015 Score=52.96 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=68.8
Q ss_pred hhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCCC
Q psy6770 209 STITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPD 287 (362)
Q Consensus 209 ~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~~ 287 (362)
+.++..++.. ..++.+|++||.++.+++++.+ |+. .+.|+.|+.++...+++.++.+.++. ++-.++.++..+.
T Consensus 120 ~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 194 (319)
T 2chq_A 120 AALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISG 194 (319)
T ss_dssp HTTGGGTSSS--SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTT
T ss_pred HHHHHHHHhc--CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4445444432 3568899999999999999999 886 89999999999999999998765443 2224666776655
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 288 RISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 288 g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
| +...+.+.+..++. . ...++.+++.+.+.
T Consensus 195 G-~~r~~~~~l~~~~~---~--~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 195 G-DFRKAINALQGAAA---I--GEVVDADTIYQITA 224 (319)
T ss_dssp T-CHHHHHHHHHHHHH---S--SSCBCHHHHHHHTT
T ss_pred C-CHHHHHHHHHHHHH---c--CCCCCHHHHHHHHC
Confidence 4 23333344443332 1 24567776655443
No 152
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.06 E-value=0.003 Score=58.23 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=60.5
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc---------CCCCCCCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK---------MNLSDEVD 278 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~---------~~~~~~~~ 278 (362)
.+.++..++... .++.+|++||.++.+++++.+ ||. .+.|+.|+.++|.+|++.++.. +.+.+.-.
T Consensus 123 ~~~L~~~le~~~--~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~ 197 (324)
T 3u61_B 123 QRHLRSFMEAYS--SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKV 197 (324)
T ss_dssp HHHHHHHHHHHG--GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHH
T ss_pred HHHHHHHHHhCC--CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 445565565543 467889999999999999999 995 7999999999987776665422 22222023
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 279 LEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 279 ~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
++.+++.+.| |+..+.+..-..+ ....|+.+++...+.
T Consensus 198 ~~~l~~~~~g----d~R~a~~~L~~~~---~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 198 VAALVKKNFP----DFRKTIGELDSYS---SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHHTCS----CTTHHHHHHHHHG---GGTCBCC--------
T ss_pred HHHHHHhCCC----CHHHHHHHHHHHh---ccCCCCHHHHHHHhC
Confidence 5667766444 4444333222222 234566666655443
No 153
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.04 E-value=0.021 Score=66.43 Aligned_cols=112 Identities=12% Similarity=0.128 Sum_probs=81.0
Q ss_pred cHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHH
Q psy6770 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELL 81 (362)
Q Consensus 2 lLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL 81 (362)
.+++++|+.+|.+++.++|++-.+ .+.+..+|..+...+ ++++|||++.+-+ .....+++.+
T Consensus 660 e~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~-----------evLs~l~~~l 721 (2695)
T 4akg_A 660 ETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDE-----------KVLSAVSANI 721 (2695)
T ss_dssp HHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcCh-----------HHHHHHHHHH
Confidence 589999999999999999986654 345677888887776 9999999997632 2233332222
Q ss_pred ----Hhcc---------C--CCCCCCeEEEEEcC----CCCCCCccccCCCcceeEEEccCCCHHHHHHHHH
Q psy6770 82 ----NQMD---------G--FDQTTNVKVIMATN----RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134 (362)
Q Consensus 82 ----~~ld---------~--l~~~~~v~vi~tTn----~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~ 134 (362)
..+. | +.-.++..+++|.| ....+++++++ || ..+.+..|+.+...+|+-
T Consensus 722 ~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 722 QQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHH
Confidence 2221 1 12234567888888 45679999998 98 679999999998888764
No 154
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.87 E-value=0.015 Score=54.20 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=73.8
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.++..++.. ..++++|++||.++.+++++.+ |+ ..+.++.|+.++...+++.++.+.++. ++-.++.+++.+
T Consensus 136 ~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 136 FNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 (373)
T ss_dssp HHHHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS
T ss_pred HHHHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 45555555443 3578899999999999999988 87 789999999999999999988654332 122366788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
.| +..++.+++..+...+ ...|+.+++.++
T Consensus 211 ~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~ 240 (373)
T 1jr3_A 211 EG-SLRDALSLTDQAIASG----DGQVSTQAVSAM 240 (373)
T ss_dssp SS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHhc----CCcccHHHHHHH
Confidence 76 6677777777765432 345666666544
No 155
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.77 E-value=0.2 Score=45.72 Aligned_cols=115 Identities=18% Similarity=0.247 Sum_probs=66.3
Q ss_pred HHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC---------CCCccccC
Q psy6770 41 LAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD---------TLDPALLR 111 (362)
Q Consensus 41 ~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~---------~ld~al~r 111 (362)
.+...+|.+|+|||++.+.... ...+......+..+++.. .++.+|.|++... .....+.
T Consensus 123 ~~~~~~~~vlvlDe~~~~~~~~----~~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~- 191 (350)
T 2qen_A 123 LGEELGEFIVAFDEAQYLRFYG----SRGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY- 191 (350)
T ss_dssp HHHHHSCEEEEEETGGGGGGBT----TTTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT-
T ss_pred HHhccCCEEEEEeCHHHHhccC----ccchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc-
Confidence 3333359999999999986411 011223344555554432 3566666654321 1122232
Q ss_pred CCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHH
Q psy6770 112 PGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQ 168 (362)
Q Consensus 112 ~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~ 168 (362)
||+...+++++.+.++-.+++...+...+.. +......+...+.|+.. -+..++.
T Consensus 192 -~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 192 -GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp -TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred -cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 4777789999999999999998877544322 22245566677777543 3444443
No 156
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.09 E-value=0.02 Score=64.59 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=62.6
Q ss_pred CcHHHHHHhhhC---CcEEEEechh----hhhhhcC------------chHHHHHHHHHHHHHcCCeEEEeccccccccc
Q psy6770 1 YLLCTSFDTELV---TAFIRVVGSE----FVQKYLG------------EGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 1 slLakaiA~e~~---~~~~~v~~s~----l~~~~~g------------ese~~l~~~F~~a~~~~P~II~iDeiD~l~~~ 61 (362)
|+||.++|.+.. -....++... +.....| .+++.++.+++.++..+|++|+||+++.+++.
T Consensus 1441 T~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1441 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhccc
Confidence 467777776653 3344444332 2223333 56788889999999999999999999999985
Q ss_pred cC---CCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEE
Q psy6770 62 RF---DAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 98 (362)
Q Consensus 62 r~---~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~t 98 (362)
+. ..+........+.++++|.+|.+.....++++|.+
T Consensus 1521 ~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1521 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 31 11111111135778888888887655556666654
No 157
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.90 E-value=0.022 Score=47.46 Aligned_cols=88 Identities=6% Similarity=-0.019 Sum_probs=51.0
Q ss_pred CcHHHHHHhhh----CCcEEEEechhhhhhhcCchHH-HHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHH
Q psy6770 1 YLLCTSFDTEL----VTAFIRVVGSEFVQKYLGEGPR-MVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQR 75 (362)
Q Consensus 1 slLakaiA~e~----~~~~~~v~~s~l~~~~~gese~-~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~ 75 (362)
|.|++++|+.+ |..++.++..++...+...... ....+.+ ....|.+|+|||++... .+.....
T Consensus 52 TtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~~---------~~~~~~~ 120 (180)
T 3ec2_A 52 THLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSER---------LSDWQRE 120 (180)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSSC---------CCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCCc---------CCHHHHH
Confidence 57889998877 7777888887776543211000 0001111 12368999999998542 2333445
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEcCCCC
Q psy6770 76 ILLELLNQMDGFDQTTNVKVIMATNRAD 103 (362)
Q Consensus 76 ~l~~lL~~ld~l~~~~~v~vi~tTn~~~ 103 (362)
.+..+++... ..+..+|.|||.+.
T Consensus 121 ~l~~ll~~~~----~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 121 LISYIITYRY----NNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHH----HTTCEEEEECCCCS
T ss_pred HHHHHHHHHH----HcCCCEEEEcCCCh
Confidence 6666665432 12456777888754
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.75 E-value=0.0034 Score=52.27 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=37.0
Q ss_pred ccCCeEEEEecCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHH
Q psy6770 220 NIGNLQVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVF 264 (362)
Q Consensus 220 ~~~~v~vi~aTn~~~-----~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~ 264 (362)
+.+++.+|++||.++ .+|+++.+ ||+ .++++.|+.++|.+|+
T Consensus 148 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 148 ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ccCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 456788999999887 78999999 999 6999999999998875
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.59 E-value=0.052 Score=49.39 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=61.3
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.++..|+.. ..++.+|++||.++.+++++.+ |+. .+.|+.|+.++...+++.++...++. ++-.++.+++.+
T Consensus 127 ~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 201 (327)
T 1iqp_A 127 QQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIA 201 (327)
T ss_dssp HHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHC
Confidence 34455555543 3467888899999999999988 887 78999999999999999988755432 222356677766
Q ss_pred CCCCHHHHHHHHHHHH
Q psy6770 287 DRISGADINAICQEAG 302 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~ 302 (362)
.| +...+.+++..+.
T Consensus 202 ~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 202 EG-DMRRAINILQAAA 216 (327)
T ss_dssp TT-CHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHH
Confidence 55 3344444444443
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.43 E-value=0.018 Score=57.97 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=72.8
Q ss_pred CCeEEEEecCCC--CCCCccccCCCCcc---eeEEecC--C-CHHHHHHHHHHHhccC------CCCCCCCHHHHhhC--
Q psy6770 222 GNLQVIMATNRA--DTLDPALLRPGRLD---RKIEFPL--P-DRRQKRLVFSTITAKM------NLSDEVDLEDYVAR-- 285 (362)
Q Consensus 222 ~~v~vi~aTn~~--~~lD~a~~RpgRfd---~~i~~~~--P-~~~~r~~i~~~~l~~~------~~~~~~~~~~la~~-- 285 (362)
.++.||+|||+. +.+|+++++ ||+ ..+.++. | ..+....+++.+.... ..-++-.+..|++.
T Consensus 251 ~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~ 328 (604)
T 3k1j_A 251 CDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQ 328 (604)
T ss_dssp CCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHH
T ss_pred eeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHh
Confidence 368899999987 789999999 997 4554432 2 2344444444333211 11112224444442
Q ss_pred -CCCC------CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCchHHHHHHHH
Q psy6770 286 -PDRI------SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVRENRYI 337 (362)
Q Consensus 286 -~~g~------sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~~~~~~~~~ 337 (362)
..|- +..++.++++.|...|..++...|+.+|+.+|+...........++|.
T Consensus 329 r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~~~i~~~~~e~~l 387 (604)
T 3k1j_A 329 KRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAKPLEKQLADWYI 387 (604)
T ss_dssp HTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhhhhhHHHHHHHHh
Confidence 2553 789999999999988888888999999999999653332223334443
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.26 E-value=0.071 Score=48.38 Aligned_cols=106 Identities=9% Similarity=0.024 Sum_probs=69.7
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.++..++.. ..++.+|++||.++.+++++.. |+. .+.|+.|+.++...+++.++.+.++. ++-.++.+++.+
T Consensus 124 ~~~L~~~le~~--~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 198 (323)
T 1sxj_B 124 QQALRRTMELY--SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTA 198 (323)
T ss_dssp HHTTHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 34455555443 2567888899999999999988 876 89999999999999999987643332 222356677776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~ 324 (362)
.|--+ .+.+++..+... ...++.+++.+.+..
T Consensus 199 ~G~~r-~a~~~l~~~~~~-----~~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 199 EGDMR-QAINNLQSTVAG-----HGLVNADNVFKIVDS 230 (323)
T ss_dssp TTCHH-HHHHHHHHHHHH-----HSSBCHHHHHHHHTS
T ss_pred CCCHH-HHHHHHHHHHhc-----CCCcCHHHHHHHHCC
Confidence 55433 333333433321 145777777766543
No 162
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.14 E-value=0.017 Score=54.65 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=62.9
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEecccccccc-ccCCCCCCCcHHHHHHHHH
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIAT-KRFDAQTGADREVQRILLE 79 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~-~r~~~~~~~~~~~~~~l~~ 79 (362)
|+|+++||+.++..++.+..+.-. .. |......+.+++++||++.+.. .+.. ..+ +. . .....
T Consensus 183 STl~~~l~~~~~g~~~~~~~~~~~------~~------~~lg~~~q~~~~l~dd~~~~~~~~r~l-~~~-~~-~-~~~~~ 246 (377)
T 1svm_A 183 TTLAAALLELCGGKALNVNLPLDR------LN------FELGVAIDQFLVVFEDVKGTGGESRDL-PSG-QG-I-NNLDN 246 (377)
T ss_dssp HHHHHHHHHHHCCEEECCSSCTTT------HH------HHHGGGTTCSCEEETTCCCSTTTTTTC-CCC-SH-H-HHHHT
T ss_pred HHHHHHHHhhcCCcEEEEeccchh------HH------HHHHHhcchhHHHHHHHHHHHHHHhhc-ccc-Cc-c-hHHHH
Confidence 679999999988877664433210 00 1111223457789999999876 3311 111 11 1 12233
Q ss_pred HHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccC
Q psy6770 80 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 123 (362)
Q Consensus 80 lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~ 123 (362)
+.+.+++ .+.|+.+||+++.+ +++.+|||++..++...
T Consensus 247 l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 247 LRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp THHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 4444554 35688899999999 79999999998777654
No 163
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.72 E-value=0.091 Score=52.82 Aligned_cols=117 Identities=19% Similarity=0.313 Sum_probs=68.9
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhcc----CC------------CCCCCeEEEEEcCCC--CCCCc
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMD----GF------------DQTTNVKVIMATNRA--DTLDP 107 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~l------------~~~~~v~vi~tTn~~--~~ld~ 107 (362)
.+.++||||+|.+-+ .....+..+|..-. +. ....++.+|++||.. ..+++
T Consensus 201 ~~gvL~LDEi~~l~~-----------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL-----------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp TTSEEEETTGGGSCH-----------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred CCCEEEEechhhCCH-----------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 467999999998731 22344444444211 10 012367899999976 68999
Q ss_pred cccCCCcce---eEEEccC--C-CHHHHHHHHHHHHccCC---CCCcC---CHHHHHh---cCCC------CcHhhHHHH
Q psy6770 108 ALLRPGRLD---RKIEFPL--P-DRRQKRLVFSTITAKMN---LSDEV---DLEDYVA---RPDR------ISGADINAI 166 (362)
Q Consensus 108 al~r~gRf~---~~i~i~~--P-~~~~r~~il~~~~~~~~---~~~~~---dl~~la~---~t~g------~s~~di~~l 166 (362)
++++ ||. ..+.++. + +.+....+++....... ....+ .+..+.. +..| .+..++.++
T Consensus 270 ~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 270 ALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp HHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred HHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 9999 996 5666543 2 34556666654433211 11112 2333333 3355 378999999
Q ss_pred HHHHHHhhc
Q psy6770 167 CQEVIMATN 175 (362)
Q Consensus 167 ~~~a~~~~~ 175 (362)
++.|...|.
T Consensus 348 lr~A~~~A~ 356 (604)
T 3k1j_A 348 VRAAGDIAV 356 (604)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876653
No 164
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.54 E-value=0.083 Score=48.86 Aligned_cols=90 Identities=10% Similarity=0.146 Sum_probs=62.9
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-C-CCCHHHHhhC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-D-EVDLEDYVAR 285 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~-~~~~~~la~~ 285 (362)
.+.++..|.... .+..+|.+||.++.+.+++.. |+ ..+.|+.|+.++...+++.++.+.++. + +-.++.+++.
T Consensus 151 ~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~ 225 (354)
T 1sxj_E 151 QAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA 225 (354)
T ss_dssp HHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHH
T ss_pred HHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 345555555543 357888899999999999988 88 889999999999999999988654332 2 3346777776
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy6770 286 PDRISGADINAICQEAGM 303 (362)
Q Consensus 286 ~~g~sgadi~~~~~~a~~ 303 (362)
+.| +-.++.+++..+..
T Consensus 226 ~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 226 SNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp HTT-CHHHHHHHHTHHHH
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 654 34444455554443
No 165
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.51 E-value=0.13 Score=48.41 Aligned_cols=101 Identities=10% Similarity=0.020 Sum_probs=73.4
Q ss_pred CCeEEEEecCCCC---CCC---ccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC---CCCCHHHHhhCCC-----
Q psy6770 222 GNLQVIMATNRAD---TLD---PALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS---DEVDLEDYVARPD----- 287 (362)
Q Consensus 222 ~~v~vi~aTn~~~---~lD---~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~---~~~~~~~la~~~~----- 287 (362)
.++.+|++||.++ .++ +.+.+ ||...+.++.++.++..++++..+...... ++-.+..+++.+.
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 5788999998776 345 66777 777779999999999999998776422111 1223566777777
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 288 -RISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 288 -g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
|. ...+..+|..|...+..++...++.+++..++...
T Consensus 256 ~G~-p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 256 DGS-ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCC-HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 64 45677888888888877777788888888777654
No 166
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.21 E-value=0.4 Score=45.25 Aligned_cols=154 Identities=18% Similarity=0.291 Sum_probs=79.5
Q ss_pred cHHHHHHhhhC---CcEEEEechhhhhh-----hcCchH-------HHHHHHHHHHHHcCCeEEEeccccccccccCCCC
Q psy6770 2 LLCTSFDTELV---TAFIRVVGSEFVQK-----YLGEGP-------RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQ 66 (362)
Q Consensus 2 lLakaiA~e~~---~~~~~v~~s~l~~~-----~~gese-------~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~ 66 (362)
++|++|....+ .+|+.++|+.+-.. .+|... ..-...|+.|. ..++|+|||+.+-.
T Consensus 175 ~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~------ 245 (387)
T 1ny5_A 175 VVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSL------ 245 (387)
T ss_dssp HHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCH------
T ss_pred HHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCCH------
Confidence 57777776654 69999999865321 111000 00112344443 37999999998842
Q ss_pred CCCcHHHHHHHHHHHHhc--cCCCC----CCCeEEEEEcCCCCCCCccccCCCccee-------EEEccCCCHHHH----
Q psy6770 67 TGADREVQRILLELLNQM--DGFDQ----TTNVKVIMATNRADTLDPALLRPGRLDR-------KIEFPLPDRRQK---- 129 (362)
Q Consensus 67 ~~~~~~~~~~l~~lL~~l--d~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~~-------~i~i~~P~~~~r---- 129 (362)
.....+..+|+.- ..+.. ..++-+|++||.. +. .+.+.|+|.. .+.+.+|...+|
T Consensus 246 -----~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di 317 (387)
T 1ny5_A 246 -----EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN--IK-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDI 317 (387)
T ss_dssp -----HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC--HH-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHH
T ss_pred -----HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC--HH-HHHHcCCccHHHHHhhcCCeecCCcchhccccH
Confidence 2344555555541 11111 1357799999963 22 2223344421 344555665444
Q ss_pred HHHHHHHHcc----CCCC-CcCC---HHHHHhcCCCCc--HhhHHHHHHHHHHhh
Q psy6770 130 RLVFSTITAK----MNLS-DEVD---LEDYVARPDRIS--GADINAICQEVIMAT 174 (362)
Q Consensus 130 ~~il~~~~~~----~~~~-~~~d---l~~la~~t~g~s--~~di~~l~~~a~~~~ 174 (362)
..+++.++.. .+.. ..++ +..+.. ..|. ..++++++..|+..+
T Consensus 318 ~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~--~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 318 IPLANHFLKKFSRKYAKEVEGFTKSAQELLLS--YPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH--SCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh--CCCCcHHHHHHHHHHHHHHhC
Confidence 3444554432 2211 1233 233333 2343 348888888887755
No 167
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.03 E-value=0.25 Score=48.52 Aligned_cols=92 Identities=15% Similarity=0.227 Sum_probs=60.2
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc--CCCCCCCCHHHHhhCCCCCCHHHHHHHHHH
Q psy6770 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK--MNLSDEVDLEDYVARPDRISGADINAICQE 300 (362)
Q Consensus 223 ~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~--~~~~~~~~~~~la~~~~g~sgadi~~~~~~ 300 (362)
.+++++++.....+++ ++ |+...+.|+.|+.+++.++++.++.+ +.+.++ .++.|++.+ ++|+..+++.
T Consensus 181 ~iIli~~~~~~~~l~~--l~--~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s----~GdiR~~i~~ 251 (516)
T 1sxj_A 181 PLILICNERNLPKMRP--FD--RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTT----RGDIRQVINL 251 (516)
T ss_dssp CEEEEESCTTSSTTGG--GT--TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHT----TTCHHHHHHH
T ss_pred CEEEEEcCCCCccchh--hH--hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc----CCcHHHHHHH
Confidence 3444444443344443 44 66779999999999999999887754 334433 377788765 4467766665
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 301 AGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 301 a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
....+. +...|+.+++..++...
T Consensus 252 L~~~~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 252 LSTIST--TTKTINHENINEISKAW 274 (516)
T ss_dssp HTHHHH--HSSCCCTTHHHHHHHHH
T ss_pred HHHHHh--cCCCCchHHHHHHHHhh
Confidence 544333 45678888888877654
No 168
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.23 E-value=0.52 Score=55.70 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=80.3
Q ss_pred cHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHH
Q psy6770 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELL 81 (362)
Q Consensus 2 lLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL 81 (362)
-+++.+|+.+|.+++.++|++-++ .+.+.++|..+-+.+ +..+|||++.+- .+...++.+.+
T Consensus 619 et~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~G-aW~cfDEfNrl~-----------~~vLSvv~~qi 680 (3245)
T 3vkg_A 619 ETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQCG-AWGCFDEFNRLE-----------ERILSAVSQQI 680 (3245)
T ss_dssp HHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHHT-CEEEEETTTSSC-----------HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhcC-cEEEehhhhcCC-----------HHHHHHHHHHH
Confidence 478999999999999999986543 345677888888776 999999999762 22233333332
Q ss_pred Hhc-------------c-C--CCCCCCeEEEEEcC----CCCCCCccccCCCcceeEEEccCCCHHHHHHHHH
Q psy6770 82 NQM-------------D-G--FDQTTNVKVIMATN----RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134 (362)
Q Consensus 82 ~~l-------------d-~--l~~~~~v~vi~tTn----~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~ 134 (362)
..+ . | +.-++...+++|.| ....++.+++. || +.+.+..|+.+...+|+-
T Consensus 681 ~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 681 QTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVML 750 (3245)
T ss_dssp HHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHHH
Confidence 211 1 1 22234677888887 34689999999 88 559999999998888763
No 169
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.71 E-value=0.81 Score=42.82 Aligned_cols=156 Identities=17% Similarity=0.269 Sum_probs=76.5
Q ss_pred cHHHHHHhhhCCc--EEEEechhhhhhh-----cCch-------HHHHHHHHHHHHHcCCeEEEeccccccccccCCCCC
Q psy6770 2 LLCTSFDTELVTA--FIRVVGSEFVQKY-----LGEG-------PRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQT 67 (362)
Q Consensus 2 lLakaiA~e~~~~--~~~v~~s~l~~~~-----~ges-------e~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~ 67 (362)
++|++|....+.. |+.++|+.+-... +|.. .+.-...|+.|. ...||+|||+.+-.
T Consensus 167 ~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~------- 236 (368)
T 3dzd_A 167 IVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELDQ------- 236 (368)
T ss_dssp HHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSCH-------
T ss_pred HHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcC---CCeEEecChhhCCH-------
Confidence 5778887766644 9999998653211 1100 000011344442 36899999998832
Q ss_pred CCcHHHHHHHHHHHHhc--cCCCC----CCCeEEEEEcCCCCCCCccccCCCccee-------EEEccCCCHH----HHH
Q psy6770 68 GADREVQRILLELLNQM--DGFDQ----TTNVKVIMATNRADTLDPALLRPGRLDR-------KIEFPLPDRR----QKR 130 (362)
Q Consensus 68 ~~~~~~~~~l~~lL~~l--d~l~~----~~~v~vi~tTn~~~~ld~al~r~gRf~~-------~i~i~~P~~~----~r~ 130 (362)
.....+..+|+.= ..+.. .-++-+|++||.. +. .....|+|.. .+.+.+|... +..
T Consensus 237 ----~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~ 309 (368)
T 3dzd_A 237 ----RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVI 309 (368)
T ss_dssp ----HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHH
T ss_pred ----HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHH
Confidence 2344555555431 11111 1246788888843 22 2233455533 3344445443 444
Q ss_pred HHHHHHHccC----CCC-CcCC---HHHHHhcCCCCcHhhHHHHHHHHHHhh
Q psy6770 131 LVFSTITAKM----NLS-DEVD---LEDYVARPDRISGADINAICQEVIMAT 174 (362)
Q Consensus 131 ~il~~~~~~~----~~~-~~~d---l~~la~~t~g~s~~di~~l~~~a~~~~ 174 (362)
.+++.++... +.. ..++ +..|....=-=...++++++..++..+
T Consensus 310 ~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 310 LLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 5555555432 211 1233 233333221123466777777776644
No 170
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.02 E-value=0.33 Score=45.16 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCccccCCCCcceeEEecCCCHHHHHHHHHH----Hh-------ccCCCC---CCCCHHHHhhC--CCCCCHHHHHHHHH
Q psy6770 236 LDPALLRPGRLDRKIEFPLPDRRQKRLVFST----IT-------AKMNLS---DEVDLEDYVAR--PDRISGADINAICQ 299 (362)
Q Consensus 236 lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~----~l-------~~~~~~---~~~~~~~la~~--~~g~sgadi~~~~~ 299 (362)
++|+++. |||..+.|..|+.+.+..|+.. ++ ...... ++--++.|++. ...+.+.+|++++.
T Consensus 239 ~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie 316 (363)
T 3hws_A 239 LIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVE 316 (363)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred CCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHH
Confidence 6788887 9999999999999999999886 22 111211 11124555542 34555678999988
Q ss_pred HHHHHHHHh
Q psy6770 300 EAGMHAVRE 308 (362)
Q Consensus 300 ~a~~~a~~~ 308 (362)
++...++.+
T Consensus 317 ~~~~~~l~~ 325 (363)
T 3hws_A 317 AALLDTMYD 325 (363)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 888877765
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.75 E-value=0.22 Score=42.02 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=35.3
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhhhhcCc-hHHHHHHHHHHHHHcCCeEEEeccccccc
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQKYLGE-GPRMVRDVFRLAKENSPAIIFIDEIDAIA 59 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~~~~ge-se~~l~~~F~~a~~~~P~II~iDeiD~l~ 59 (362)
|.||+++++++ +.+++.++++++.....+. ....+..+++... .+.+|+|||++...
T Consensus 68 T~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 68 TYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred HHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 46899999888 6788889988776543211 0011223333333 24699999997653
No 172
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.29 E-value=0.14 Score=47.34 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=62.9
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARP 286 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~~la~~~ 286 (362)
.+.++..|+... .++.+|++||.++.+++++.. |+. .+.|..++.++....+...+....+. ++..+..+++.
T Consensus 127 ~~~L~~~le~~~--~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~- 200 (340)
T 1sxj_C 127 QNALRRVIERYT--KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIEL- 200 (340)
T ss_dssp HHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHH-
T ss_pred HHHHHHHHhcCC--CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Confidence 345565565543 456778889999999999998 986 68888888888888888877433222 12224445553
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHH
Q psy6770 287 DRISGADINAICQEAGMHAVRE---NRYIVLPKDFEKGY 322 (362)
Q Consensus 287 ~g~sgadi~~~~~~a~~~a~~~---~~~~v~~~~~~~a~ 322 (362)
||+|++.+.+.....+... +...++.+++...+
T Consensus 201 ---s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 201 ---SNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp ---HTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred ---cCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHh
Confidence 3445554433321111111 11256666665443
No 173
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=88.98 E-value=1.1 Score=41.27 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=70.7
Q ss_pred HHHHHHHHHH----cCCeEEEeccccc-cccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC------
Q psy6770 35 VRDVFRLAKE----NSPAIIFIDEIDA-IATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD------ 103 (362)
Q Consensus 35 l~~~F~~a~~----~~P~II~iDeiD~-l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~------ 103 (362)
++.+.+.+.. ...-||+|||+|. +.. ...+.|+..++. ..+.+++|.+++.++
T Consensus 61 ~~~l~~~~~~~plf~~~kvvii~~~~~kl~~--------------~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~ 124 (343)
T 1jr3_D 61 WNAIFSLCQAMSLFASRQTLLLLLPENGPNA--------------AINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENA 124 (343)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCSSCCCT--------------THHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTS
T ss_pred HHHHHHHhcCcCCccCCeEEEEECCCCCCCh--------------HHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhh
Confidence 4555555543 2357999999987 421 123344444443 234555555555433
Q ss_pred CCCccccCCCcceeEEEccCCCHHHHHHHHHHHHccCCCC-CcCCHHHHHhcCCCCcHhhHHHHHHHHHHh
Q psy6770 104 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA 173 (362)
Q Consensus 104 ~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~~~~~~~~~-~~~dl~~la~~t~g~s~~di~~l~~~a~~~ 173 (362)
.+-+++.+ |. .++++..|+..+....++..+...+.. +...+..++..+.| ...++.+.+......
T Consensus 125 k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~ 191 (343)
T 1jr3_D 125 AWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLL 191 (343)
T ss_dssp HHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHh
Confidence 45567776 65 578999999999998888888776643 12234556655443 555555555555544
No 174
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.92 E-value=0.33 Score=44.69 Aligned_cols=72 Identities=13% Similarity=0.031 Sum_probs=52.9
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCC
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPD 287 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~ 287 (362)
.+.++..|+.. ..++++|++||.++.|+|.+.. |.. .+.|+.|+.++...+++... .++ +..+..+++.+.
T Consensus 125 ~naLLk~lEep--~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s~ 195 (334)
T 1a5t_A 125 ANALLKTLEEP--PAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLSA 195 (334)
T ss_dssp HHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcC
Confidence 56677666543 3578899999999999999998 874 79999999999998888765 222 223455666655
Q ss_pred C
Q psy6770 288 R 288 (362)
Q Consensus 288 g 288 (362)
|
T Consensus 196 G 196 (334)
T 1a5t_A 196 G 196 (334)
T ss_dssp T
T ss_pred C
Confidence 5
No 175
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.41 E-value=0.055 Score=44.56 Aligned_cols=36 Identities=39% Similarity=0.491 Sum_probs=30.0
Q ss_pred hhccCCeEEEEecCCCC-----CCCccccCCCCcceeEEecCCC
Q psy6770 218 MLNIGNLQVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPD 256 (362)
Q Consensus 218 ~~~~~~v~vi~aTn~~~-----~lD~a~~RpgRfd~~i~~~~P~ 256 (362)
+.+.+++.+|++||.+. .+|+++.| ||+. ++++.|+
T Consensus 147 ~~~~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 147 MLARGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp HHHTTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred HHhcCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 33457789999999876 68999999 9995 9999885
No 176
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.28 E-value=0.61 Score=43.51 Aligned_cols=84 Identities=11% Similarity=0.090 Sum_probs=49.5
Q ss_pred CCccccCCCCcceeEEecCCCHHHHHHHHHH----Hhc-------cCCCC---CCCCHHHHhhCC--CCCCHHHHHHHHH
Q psy6770 236 LDPALLRPGRLDRKIEFPLPDRRQKRLVFST----ITA-------KMNLS---DEVDLEDYVARP--DRISGADINAICQ 299 (362)
Q Consensus 236 lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~----~l~-------~~~~~---~~~~~~~la~~~--~g~sgadi~~~~~ 299 (362)
+.|+++. ||+..+.|+.++.++...|+.. ++. ..... ++--++.|++.. ......++.+++.
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 3455555 8888888888888888888862 211 11111 111244455542 2356778888888
Q ss_pred HHHHHHHHhcC------CCCCHHHHHHH
Q psy6770 300 EAGMHAVRENR------YIVLPKDFEKG 321 (362)
Q Consensus 300 ~a~~~a~~~~~------~~v~~~~~~~a 321 (362)
.+...++.+.. ..|+.+++..+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 334 DFCLDIMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHHHHHHTGGGGTTSEEEECHHHHTTS
T ss_pred HHHHHHHhhccCCCCCEEEEeHHHhcCC
Confidence 88777665422 14666666553
No 177
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.15 E-value=1.3 Score=52.58 Aligned_cols=122 Identities=14% Similarity=0.217 Sum_probs=75.5
Q ss_pred HHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHH----H-H-----------cCCeEEEeccccccccccCCCCC
Q psy6770 4 CTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----K-E-----------NSPAIIFIDEIDAIATKRFDAQT 67 (362)
Q Consensus 4 akaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a----~-~-----------~~P~II~iDeiD~l~~~r~~~~~ 67 (362)
..++++..+.+++.++.+.-.+ ...+...++.- + . .+..|+||||++---... .
T Consensus 1322 ~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~--y-- 1391 (3245)
T 3vkg_A 1322 TSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDK--Y-- 1391 (3245)
T ss_dssp HHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCT--T--
T ss_pred HHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCccc--c--
Confidence 3455555567788888775443 23344444321 1 0 113699999998532221 1
Q ss_pred CCcHHHHHHHHHHHHhc---cC----CCCCCCeEEEEEcCCC-----CCCCccccCCCcceeEEEccCCCHHHHHHHHHH
Q psy6770 68 GADREVQRILLELLNQM---DG----FDQTTNVKVIMATNRA-----DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 135 (362)
Q Consensus 68 ~~~~~~~~~l~~lL~~l---d~----l~~~~~v~vi~tTn~~-----~~ld~al~r~gRf~~~i~i~~P~~~~r~~il~~ 135 (362)
+ ......++.++++.- +. ...-.++.+|+|.|.| ..+++.+.| ||.. +.++.|+.+....|+..
T Consensus 1392 G-tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~t 1467 (3245)
T 3vkg_A 1392 G-TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGT 1467 (3245)
T ss_dssp S-CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHH
T ss_pred c-cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHH
Confidence 1 122346677776542 11 0112468899999987 468999999 9955 99999999999999876
Q ss_pred HHcc
Q psy6770 136 ITAK 139 (362)
Q Consensus 136 ~~~~ 139 (362)
++..
T Consensus 1468 il~~ 1471 (3245)
T 3vkg_A 1468 FNRA 1471 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 178
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=85.81 E-value=1.8 Score=42.01 Aligned_cols=105 Identities=14% Similarity=0.079 Sum_probs=68.3
Q ss_pred CCeEEEEecCCCC-----------CCCccccCCCCcceeEE-ecCCCHHHH---------HHHHHHHh---ccCCCCCCC
Q psy6770 222 GNLQVIMATNRAD-----------TLDPALLRPGRLDRKIE-FPLPDRRQK---------RLVFSTIT---AKMNLSDEV 277 (362)
Q Consensus 222 ~~v~vi~aTn~~~-----------~lD~a~~RpgRfd~~i~-~~~P~~~~r---------~~i~~~~l---~~~~~~~~~ 277 (362)
.++.||||+|... .|.++++- |||..+. .+.|+.+.- .+.++.|. +...+.+.+
T Consensus 338 arf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~l 415 (506)
T 3f8t_A 338 ARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPEL 415 (506)
T ss_dssp CCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEE
T ss_pred CCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 4689999999865 78899999 9998654 567765431 12233332 201111111
Q ss_pred C---HHHHh-----------------hCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 278 D---LEDYV-----------------ARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 278 ~---~~~la-----------------~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
+ .+.++ ...-|.|...+..+++-|.-.|..++++.|+.+|+..|+.-+..+
T Consensus 416 s~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 416 TEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWY 486 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHH
Confidence 1 11111 035689999999999999999999999999999999998876655
No 179
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=84.95 E-value=0.29 Score=44.59 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=52.6
Q ss_pred CCeEEEEecCCC-------CCCCccccCCCCcceeEEecCCCHHHHHH----HHHHHhcc----CCCC-CCCC---HHHH
Q psy6770 222 GNLQVIMATNRA-------DTLDPALLRPGRLDRKIEFPLPDRRQKRL----VFSTITAK----MNLS-DEVD---LEDY 282 (362)
Q Consensus 222 ~~v~vi~aTn~~-------~~lD~a~~RpgRfd~~i~~~~P~~~~r~~----i~~~~l~~----~~~~-~~~~---~~~l 282 (362)
.++.+|+|||.+ ..+++++.. ||+ .+.+.+|...+|.+ +++.++.+ .... ..++ ++.|
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L 212 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLL 212 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 468899999986 123444444 554 56677777665543 55555532 1111 1233 4455
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy6770 283 VARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319 (362)
Q Consensus 283 a~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~ 319 (362)
......-...++.+++..|...+ ....|+.+|+.
T Consensus 213 ~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 213 IHYDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp HHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred HcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 55542234568888888877654 33566766664
No 180
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.64 E-value=0.72 Score=42.00 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=33.6
Q ss_pred CcHHHHHHhhhC----CcEEEEechhhhhhhcCc-hHHHHHHHHHHHHHcCCeEEEecccccc
Q psy6770 1 YLLCTSFDTELV----TAFIRVVGSEFVQKYLGE-GPRMVRDVFRLAKENSPAIIFIDEIDAI 58 (362)
Q Consensus 1 slLakaiA~e~~----~~~~~v~~s~l~~~~~ge-se~~l~~~F~~a~~~~P~II~iDeiD~l 58 (362)
|.||++||+++. .+++.++.+++.....+. ....+..+++... .+.+|+|||++..
T Consensus 166 T~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 166 SYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 568899998654 788888988876644321 1111222333322 3579999999754
No 181
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.52 E-value=0.23 Score=46.86 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=27.7
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceeEEecC
Q psy6770 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPL 254 (362)
Q Consensus 223 ~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~ 254 (362)
.+.|+++||+++.+ ++++||||+|..++..+
T Consensus 254 ~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 254 SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 46788999999999 89999999999998865
No 182
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.48 E-value=1.3 Score=50.36 Aligned_cols=105 Identities=10% Similarity=0.150 Sum_probs=61.0
Q ss_pred CcHHHHHHhhhC---CcEEEEechhhhhhh----cC--------chHHHHHHHHHHHHH----cCCeEEEecccccccc-
Q psy6770 1 YLLCTSFDTELV---TAFIRVVGSEFVQKY----LG--------EGPRMVRDVFRLAKE----NSPAIIFIDEIDAIAT- 60 (362)
Q Consensus 1 slLakaiA~e~~---~~~~~v~~s~l~~~~----~g--------ese~~l~~~F~~a~~----~~P~II~iDeiD~l~~- 60 (362)
|.||..+|.++. -+++.++.......+ +| .++..+..+++.++. ..|++|+||.+..+..
T Consensus 746 TtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~ 825 (2050)
T 3cmu_A 746 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 825 (2050)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhccc
Confidence 356666766553 458888876544332 23 222335566666554 6799999999999986
Q ss_pred cc--CCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 61 KR--FDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 61 ~r--~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.. +..++....-..+.+++++..|..+....++.||++......+
T Consensus 826 ~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~ 872 (2050)
T 3cmu_A 826 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 872 (2050)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECT
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccc
Confidence 32 1111111112245577777777766555677777765443333
No 183
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=77.56 E-value=7.4 Score=36.24 Aligned_cols=98 Identities=11% Similarity=0.155 Sum_probs=62.4
Q ss_pred CcEEEEechhhhhhhcCchH------HHHHHHHHHHHH--cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhc
Q psy6770 13 TAFIRVVGSEFVQKYLGEGP------RMVRDVFRLAKE--NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM 84 (362)
Q Consensus 13 ~~~~~v~~s~l~~~~~gese------~~l~~~F~~a~~--~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l 84 (362)
.+++.++.+.+.+. .+.. ..+..+|..+.. ..|.+++|||++.++... .+.....+..++.+.
T Consensus 223 ~~~vv~dl~~l~~~--~~~~~~~~~~~~l~~i~~~~~~~~~~~~~i~iDEa~~~~~~~-------~~~~~~~l~~~~~~~ 293 (392)
T 4ag6_A 223 SDFIVFDVHDLQNA--EDQVKRAQYFNVLSFAWNILERDRRERTVLVVDEAWMLVDPQ-------TPQAIAFLRDTSKRI 293 (392)
T ss_dssp SSEEEEECGGGTTS--CHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEETTGGGGCCTT-------CTHHHHHHHHHHHHG
T ss_pred CCEEEEEchhhhcC--CHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEecHHHHhCcC-------chHHHHHHHHHHHHh
Confidence 46777777777542 1111 133445566544 358999999999998531 123456677777766
Q ss_pred cCCCCCCCeEEEEEcCCCCCCCc--------cccCCCcceeEEEccCCC
Q psy6770 85 DGFDQTTNVKVIMATNRADTLDP--------ALLRPGRLDRKIEFPLPD 125 (362)
Q Consensus 85 d~l~~~~~v~vi~tTn~~~~ld~--------al~r~gRf~~~i~i~~P~ 125 (362)
.. .++.++.+|-.|.++.. +++. ..+..|.++.+.
T Consensus 294 Rk----~g~~~~~~tQ~~~d~~~~~~~~~~~~il~--n~~~~i~l~~~~ 336 (392)
T 4ag6_A 294 RK----YNGSLIVISQNVIDFLAPEVQRYGQALLD--NPTYKLLLAQGE 336 (392)
T ss_dssp GG----GTCEEEEEESCGGGGGSTTTHHHHHHHHH--SCSEEEECSCCH
T ss_pred hh----hCeEEEEEcCCHHHhhChhhHHHHHHHHH--hhhhhheeCCCh
Confidence 53 46667888888887754 3444 567788887764
No 184
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=75.40 E-value=2.7 Score=40.74 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=40.7
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHh----ccCCCCCCCeEEEEEcCCCC-----------CCCccccCC
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ----MDGFDQTTNVKVIMATNRAD-----------TLDPALLRP 112 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~----ld~l~~~~~v~vi~tTn~~~-----------~ld~al~r~ 112 (362)
.++|+|||+.+-+ .....+.+.+++ +.+..-+.++.||+|+|-.. .++++++.
T Consensus 302 Gvl~lDEIn~~~~-----------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD- 369 (506)
T 3f8t_A 302 GILAVDHLEGAPE-----------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS- 369 (506)
T ss_dssp SEEEEECCTTCCH-----------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT-
T ss_pred CeeehHhhhhCCH-----------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh-
Confidence 8999999997632 223444444432 11211235788999999764 78899999
Q ss_pred CcceeEE-EccCCCHHH
Q psy6770 113 GRLDRKI-EFPLPDRRQ 128 (362)
Q Consensus 113 gRf~~~i-~i~~P~~~~ 128 (362)
|||..+ .++.|+.+.
T Consensus 370 -RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 370 -HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp -TCSEEEETTC------
T ss_pred -heeeEEEecCCCChhH
Confidence 998654 456676544
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=74.96 E-value=5.8 Score=36.95 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcH---HHHHHHHHHHHhccCCCCCCCeEEEEEcC
Q psy6770 32 PRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADR---EVQRILLELLNQMDGFDQTTNVKVIMATN 100 (362)
Q Consensus 32 e~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~---~~~~~l~~lL~~ld~l~~~~~v~vi~tTn 100 (362)
+..+..+-...+...+.+|+||.+..+.+.....+...+. ...+.+.+++..|..+-...++.||++..
T Consensus 138 e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 138 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 3333333344445678999999999998532111000000 11244555555554333344566666533
No 186
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=74.87 E-value=2.2 Score=39.07 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=41.3
Q ss_pred ccCCeEEEEecCCCCC----CCccccCCCCcc-eeEEecCCCHHHHHHHHHHHhccC
Q psy6770 220 NIGNLQVIMATNRADT----LDPALLRPGRLD-RKIEFPLPDRRQKRLVFSTITAKM 271 (362)
Q Consensus 220 ~~~~v~vi~aTn~~~~----lD~a~~RpgRfd-~~i~~~~P~~~~r~~i~~~~l~~~ 271 (362)
...++++|+.+|..+. |++++.. ||. ..|.|+.++.++-..|++..+...
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 4567999999999875 5666676 887 689999999999999999988653
No 187
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=73.92 E-value=2.1 Score=38.84 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=44.5
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 268 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l 268 (362)
.+.++..|+... .++++|++||.|+.|.|++.. | .+.|+.|+.++....++..+
T Consensus 99 ~naLLk~LEep~--~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 99 ANAFLKALEEPP--EYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTHHHHHSCC--TTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 567777776543 567888888999999999988 8 89999999998888888776
No 188
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=72.58 E-value=7.8 Score=38.37 Aligned_cols=74 Identities=14% Similarity=0.395 Sum_probs=55.0
Q ss_pred eEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC--CCCccccCCCcceeEEEccCCC
Q psy6770 48 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD--TLDPALLRPGRLDRKIEFPLPD 125 (362)
Q Consensus 48 ~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~--~ld~al~r~gRf~~~i~i~~P~ 125 (362)
.+|+|||++.++... .......+..+... -..-+|.+|.+|.+|. .++..++. -|..+|-+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 689999999987532 12334455555543 2456899999999998 78888877 788999999999
Q ss_pred HHHHHHHHH
Q psy6770 126 RRQKRLVFS 134 (362)
Q Consensus 126 ~~~r~~il~ 134 (362)
..+...++.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888777763
No 189
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=69.23 E-value=8.4 Score=35.02 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=61.3
Q ss_pred hhhhhhhhhhhhccCCeEEEEecCCCC------CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-CCCCHH
Q psy6770 208 FSTITAKMNFMLNIGNLQVIMATNRAD------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLE 280 (362)
Q Consensus 208 ~~~~l~~~~~~~~~~~v~vi~aTn~~~------~lD~a~~RpgRfd~~i~~~~P~~~~r~~i~~~~l~~~~~~-~~~~~~ 280 (362)
.+.++..+.... .++++|.+|+.++ .+-+++.. |- ..+.|..|+..+....++..+...++. +.-.++
T Consensus 94 ~~aLl~~le~p~--~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~ 168 (343)
T 1jr3_D 94 NEQLLTLTGLLH--DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQ 168 (343)
T ss_dssp HHHHHHHHTTCB--TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHH
T ss_pred HHHHHHHHhcCC--CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 455666555443 3445555444433 45566555 43 578888888888888888888765443 222356
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 281 DYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 281 ~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
.|++.+.| |+..+.++--..++..+...|+.+++.+.+...
T Consensus 169 ~l~~~~~g----dl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 169 VLCYCYEG----NLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHSSTT----CHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred HHHHHhch----HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 67776544 444444433333332233467777766655443
No 190
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=68.78 E-value=2.3 Score=37.19 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCeEEEEecCCC-------CCCCccccCCCCcceeEEecCCCHHHH----HHHHHHHhc----cCCCC--CCCC---HHH
Q psy6770 222 GNLQVIMATNRA-------DTLDPALLRPGRLDRKIEFPLPDRRQK----RLVFSTITA----KMNLS--DEVD---LED 281 (362)
Q Consensus 222 ~~v~vi~aTn~~-------~~lD~a~~RpgRfd~~i~~~~P~~~~r----~~i~~~~l~----~~~~~--~~~~---~~~ 281 (362)
.++.+|+|||.+ ..+++++.. ||+. +.+.+|...+| ..+++.++. ..... ..++ ++.
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 468899999985 246788888 8864 45666666554 334444442 22221 1233 333
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy6770 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDF 318 (362)
Q Consensus 282 la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~ 318 (362)
|....-.-...++.+++..+...+ ....|+.+|+
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 444332234458888888877654 2345555554
No 191
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=64.57 E-value=5.5 Score=36.80 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccc
Q psy6770 32 PRMVRDVFRLAKENSPAIIFIDEIDAIAT 60 (362)
Q Consensus 32 e~~l~~~F~~a~~~~P~II~iDeiD~l~~ 60 (362)
+..+..+...++...|.+|+||++..+.+
T Consensus 125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 125 EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 33344344445566799999999999985
No 192
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=63.74 E-value=11 Score=35.04 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=50.0
Q ss_pred CcHHHHHHhhh---CCcEEEEechhhhh----h------------hcCchHHHHHHHHHHHHHcCCeEEEeccccccccc
Q psy6770 1 YLLCTSFDTEL---VTAFIRVVGSEFVQ----K------------YLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 1 slLakaiA~e~---~~~~~~v~~s~l~~----~------------~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~ 61 (362)
|.|+..+|..+ |-..+.++...... . .....+..+..+-...+...|.+++||.+-.+++.
T Consensus 75 STLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~ 154 (356)
T 3hr8_A 75 TTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPR 154 (356)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCH
T ss_pred HHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcCh
Confidence 45677777653 44566666543211 0 01123344444444445578999999999998862
Q ss_pred c-CCCCCCCc--HHHHHHHHHHHHhccCCCCCCCeEEEEE
Q psy6770 62 R-FDAQTGAD--REVQRILLELLNQMDGFDQTTNVKVIMA 98 (362)
Q Consensus 62 r-~~~~~~~~--~~~~~~l~~lL~~ld~l~~~~~v~vi~t 98 (362)
. -.+..+.. ....+.+.+++..+..+....++.||.+
T Consensus 155 ~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 155 AEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp HHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1 11111111 1224556666655555433444555544
No 193
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=56.98 E-value=33 Score=27.97 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=12.6
Q ss_pred HHcCCeEEEeccccc
Q psy6770 43 KENSPAIIFIDEIDA 57 (362)
Q Consensus 43 ~~~~P~II~iDeiD~ 57 (362)
....|.++++||++-
T Consensus 96 l~~~p~llilDEigp 110 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGK 110 (178)
T ss_dssp HHCTTCEEEECCCST
T ss_pred cccCCCEEEEeCCCC
Confidence 567899999999763
No 194
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=54.20 E-value=9 Score=37.41 Aligned_cols=75 Identities=15% Similarity=0.440 Sum_probs=52.1
Q ss_pred Ce-EEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC--CCCccccCCCcceeEEEccC
Q psy6770 47 PA-IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD--TLDPALLRPGRLDRKIEFPL 123 (362)
Q Consensus 47 P~-II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~--~ld~al~r~gRf~~~i~i~~ 123 (362)
|- +|+|||...++... .......+..+... ...-++.+|.+|.+|. .++..++. -|..+|-+..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 64 88999998886421 11223344444332 2334788899999987 57877777 7889999999
Q ss_pred CCHHHHHHHHH
Q psy6770 124 PDRRQKRLVFS 134 (362)
Q Consensus 124 P~~~~r~~il~ 134 (362)
.+..+...++.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 99888877764
No 195
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=49.37 E-value=22 Score=32.76 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=16.7
Q ss_pred HHHHcCCeEEEeccccccccc
Q psy6770 41 LAKENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 41 ~a~~~~P~II~iDeiD~l~~~ 61 (362)
.++...+.+|+||.+-.+.+.
T Consensus 136 l~~~~~~~lVVIDsl~~l~~~ 156 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALTPK 156 (356)
T ss_dssp HHHHTCCSEEEEECGGGCCCH
T ss_pred HHhccCCCEEEEcCHHHhcch
Confidence 344577999999999999853
No 196
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=49.25 E-value=30 Score=24.03 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 294 INAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 294 i~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
|..+..+|...|-.+++..|+.+|+..|++.+
T Consensus 39 i~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 39 LHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 55688889999999999999999999998764
No 197
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=46.89 E-value=45 Score=24.08 Aligned_cols=36 Identities=19% Similarity=0.038 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
=|..+..+|...|...++..|+.+|+..|+++....
T Consensus 43 Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~ 78 (93)
T 1n1j_A 43 FISFITSEASERCHQEKRKTINGEDILFAMSTLGFD 78 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 356677888888888899999999999999976654
No 198
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=46.40 E-value=22 Score=26.46 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
-++.++.+|...+-..++..|+.+|+.-|+++..
T Consensus 61 fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g 94 (102)
T 1id3_B 61 FLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 94 (102)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 4778999999999999999999999999998753
No 199
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=45.67 E-value=16 Score=24.82 Aligned_cols=33 Identities=24% Similarity=0.109 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
=|..+..+|...|...++..|+.+|+..|++..
T Consensus 35 fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 35 MGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 466788889999999999999999999998654
No 200
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=45.57 E-value=22 Score=30.26 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=17.6
Q ss_pred CeEEEEEcCCCCCCC---ccccCCCcceeEEEccCC
Q psy6770 92 NVKVIMATNRADTLD---PALLRPGRLDRKIEFPLP 124 (362)
Q Consensus 92 ~v~vi~tTn~~~~ld---~al~r~gRf~~~i~i~~P 124 (362)
...+|.|||.+=.-+ +.+.+ |+ ..+.++.|
T Consensus 147 ~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~~~ 179 (212)
T 1tue_A 147 CPPILLTTNIHPAKDNRWPYLES--RI-TVFEFPNA 179 (212)
T ss_dssp CCCEEEEESSCTTSSSSCHHHHT--SC-EEEECCSC
T ss_pred CCCEEEecCCCcccccchhhhhh--hE-EEEEcCCC
Confidence 457888999743323 34555 66 35666644
No 201
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=45.53 E-value=31 Score=23.74 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
-+..++++|...+-..++..++.+|+..|++
T Consensus 39 r~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 39 KLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3567888888888888999999999999874
No 202
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=44.73 E-value=15 Score=33.26 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=20.5
Q ss_pred HHHHHHHHHH-cCCeEEEeccccccccc
Q psy6770 35 VRDVFRLAKE-NSPAIIFIDEIDAIATK 61 (362)
Q Consensus 35 l~~~F~~a~~-~~P~II~iDeiD~l~~~ 61 (362)
+..+...++. ..|.+|+||.+..+...
T Consensus 191 l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 191 VDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 4455556666 78999999999998753
No 203
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=44.13 E-value=56 Score=28.40 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=34.4
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+. . +..+|.+|++++.+
T Consensus 165 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~i~~~l~~l~---~--~~tviivtH~~~~~ 217 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEAT----------SSLDSKTEYLFQKAVEDLR---K--NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHHCCSEEEEECCC----------CTTCHHHHHHHHHHHHHHT---T--TSEEEEECSSGGGS
T ss_pred HHHHHHHcCCCEEEEECcc----------ccCCHHHHHHHHHHHHHhc---C--CCEEEEEcCCHHHH
Confidence 4556666789999999933 3455666667777776663 2 24566777766543
No 204
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=44.05 E-value=11 Score=35.12 Aligned_cols=93 Identities=15% Similarity=0.237 Sum_probs=53.2
Q ss_pred CeEEEEecCCCCCCCccccCCCCccee-------EEecCCCHHHHH----HHHHHHhc----cCCCC-CCCCHHHHhhC-
Q psy6770 223 NLQVIMATNRADTLDPALLRPGRLDRK-------IEFPLPDRRQKR----LVFSTITA----KMNLS-DEVDLEDYVAR- 285 (362)
Q Consensus 223 ~v~vi~aTn~~~~lD~a~~RpgRfd~~-------i~~~~P~~~~r~----~i~~~~l~----~~~~~-~~~~~~~la~~- 285 (362)
++-+|+|||..-. .+++.|+|..- +.+.+|.-.+|. .++..++. +.... ..++-+.+...
T Consensus 272 ~~rii~at~~~l~---~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNRNIK---ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESSCHH---HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCCCHH---HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 5789999997321 34456777543 445667766654 34454443 22221 12333333322
Q ss_pred CCCCCHH--HHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy6770 286 PDRISGA--DINAICQEAGMHAVRENRYIVLPKDFEKG 321 (362)
Q Consensus 286 ~~g~sga--di~~~~~~a~~~a~~~~~~~v~~~~~~~a 321 (362)
...|.|- ++++++.+|...+ ....|+.+|+-..
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 2456665 9999999887764 3356788887543
No 205
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=43.21 E-value=71 Score=31.06 Aligned_cols=84 Identities=10% Similarity=0.148 Sum_probs=47.6
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEc---c
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF---P 122 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i---~ 122 (362)
+|.+|++|+++.. . .+.. + .++..||.||+.+..... + . | ..+++ +
T Consensus 236 ~~~LLVLDdv~~~----------------~----~l~~---l--~~~~~ilvTsR~~~~~~~-~-~-~---~~~~v~~l~ 284 (591)
T 1z6t_A 236 PRSLLILDDVWDS----------------W----VLKA---F--DSQCQILLTTRDKSVTDS-V-M-G---PKYVVPVES 284 (591)
T ss_dssp TTCEEEEEEECCH----------------H----HHHT---T--CSSCEEEEEESCGGGGTT-C-C-S---CEEEEECCS
T ss_pred CCeEEEEeCCCCH----------------H----HHHH---h--cCCCeEEEECCCcHHHHh-c-C-C---CceEeecCC
Confidence 6899999999742 1 1111 2 235567778776542211 1 1 2 22333 3
Q ss_pred CCCHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 123 LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 123 ~P~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
..+.++-.+++.................+++.+.|...
T Consensus 285 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 285 SLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPL 322 (591)
T ss_dssp SCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcH
Confidence 56788888888877654211112245678888877643
No 206
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=43.15 E-value=29 Score=25.82 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
-+++++.+|...|-..++..|+.+|+.-|+++..
T Consensus 62 ~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 62 FLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 4667888999999888999999999999999764
No 207
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=43.14 E-value=47 Score=27.92 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC-----c
Q psy6770 33 RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD-----P 107 (362)
Q Consensus 33 ~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld-----~ 107 (362)
.....+...+....|.+|++||.-+...... ........+..++..+.. .+..+|.+|+...... +
T Consensus 122 ~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~~----~g~tii~vtH~~~~~~~~~~~~ 192 (251)
T 2ehv_A 122 NFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILLE----MGVTTILTTEAPDPQHGKLSRY 192 (251)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHHH----HCCEEEEEECCC----CCSSSS
T ss_pred HHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHHH----CCCeEEEEECCCCCCccccccc
Confidence 3344555556678899999999988764321 112234456666665532 2455677777765552 2
Q ss_pred cccCCCcc-eeEEEcc
Q psy6770 108 ALLRPGRL-DRKIEFP 122 (362)
Q Consensus 108 al~r~gRf-~~~i~i~ 122 (362)
.+.. -+ |.++.+.
T Consensus 193 ~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 193 GIEE--FIARGVIVLD 206 (251)
T ss_dssp SCGG--GGCSEEEEEE
T ss_pred Chhh--EeeeEEEEEe
Confidence 2222 45 6777664
No 208
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=42.96 E-value=67 Score=27.42 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=32.8
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-= ++-|......+.+++.....+. .+.-+|.+|..++.+
T Consensus 137 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPL----------SAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSYL 192 (237)
T ss_dssp HHHHHHHHCCSEEEEESTT----------TTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTG
T ss_pred HHHHHHhcCCCEEEEeCcc----------cccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHH
Confidence 4566667789999999933 3445555555555543212222 245577777776544
No 209
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=42.89 E-value=44 Score=29.29 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=33.9
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 103 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~ 103 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+. ...+..+|.+|..++
T Consensus 166 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~i~~~l~~~~---~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNAT----------SALDAGNQLRVQRLLYESP---EWASRTVLLITQQLS 218 (271)
T ss_dssp HHHHHHTTCCSEEEEESTT----------TTCCHHHHHHHHHHHHHCT---TTTTSEEEEECSCHH
T ss_pred HHHHHHhcCCCEEEEECCc----------cCCCHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHH
Confidence 4566667789999999943 3456666666777776653 222445666777654
No 210
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=41.95 E-value=61 Score=28.02 Aligned_cols=54 Identities=15% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||- .++-|......+.+++..+. .. +.-||.+|+.++.+
T Consensus 163 ~iAraL~~~p~lllLDEP----------ts~LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEP----------IAGVAPGLAHDIFNHVLELK---AK-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHTCCSEEEEEST----------TTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCSTT
T ss_pred HHHHHHHcCCCEEEEeCC----------ccCCCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHH
Confidence 445666778999999993 23456666667777776653 12 44577778877655
No 211
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=41.67 E-value=28 Score=25.82 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~ 326 (362)
-+++++.+|...|-..++..|+.+|+.-|+++..
T Consensus 62 ~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 4667889999999889999999999999998763
No 212
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=41.52 E-value=27 Score=30.88 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=18.7
Q ss_pred CCeEEEEEcCC-C----------CCCCccccCCCcceeEEEcc
Q psy6770 91 TNVKVIMATNR-A----------DTLDPALLRPGRLDRKIEFP 122 (362)
Q Consensus 91 ~~v~vi~tTn~-~----------~~ld~al~r~gRf~~~i~i~ 122 (362)
....+|.|||. + +...++|.+ |. ..+.|+
T Consensus 189 ~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~ 228 (267)
T 1u0j_A 189 DPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELT 228 (267)
T ss_dssp CCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECC
T ss_pred cCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECC
Confidence 45677888886 2 244567777 76 556665
No 213
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=41.38 E-value=25 Score=32.12 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=20.0
Q ss_pred HHHHHHHHHH--cCCeEEEeccccccccc
Q psy6770 35 VRDVFRLAKE--NSPAIIFIDEIDAIATK 61 (362)
Q Consensus 35 l~~~F~~a~~--~~P~II~iDeiD~l~~~ 61 (362)
+..+.+.++. ..+.+|+||.+-.++..
T Consensus 206 l~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 206 LDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 3444555666 67899999999998754
No 214
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=41.02 E-value=60 Score=28.28 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=36.2
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+. .. +..+|.+|+.++.+.
T Consensus 148 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~l~---~~-g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPL----------VGLDREGKTDLLRIVEKWK---TL-GKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHHTTCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCTTTG
T ss_pred HHHHHHHcCCCEEEEcCcc----------ccCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 4566667789999999933 3456666666777766653 12 445777888776553
No 215
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=40.90 E-value=12 Score=37.59 Aligned_cols=33 Identities=12% Similarity=-0.071 Sum_probs=25.7
Q ss_pred CChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCC
Q psy6770 198 LPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNR 232 (362)
Q Consensus 198 ~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~ 232 (362)
+|||+|||.++.+++.++-. ...+|++.+.||.
T Consensus 212 GPPGTGKT~ti~~~I~~l~~--~~~~ILv~a~TN~ 244 (646)
T 4b3f_X 212 GPPGTGKTTTVVEIILQAVK--QGLKVLCCAPSNI 244 (646)
T ss_dssp CCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHH
T ss_pred CCCCCCHHHHHHHHHHHHHh--CCCeEEEEcCchH
Confidence 48999999988887766543 3467999998886
No 216
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=40.89 E-value=74 Score=27.36 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=34.1
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+. . +.-+|.+|..++.+
T Consensus 155 ~iAraL~~~p~lllLDEPt----------s~LD~~~~~~i~~~l~~~~---~--g~tviivtH~~~~~ 207 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEAT----------SALDYESEHVIMRNMHKIC---K--GRTVIIIAHRLSTV 207 (247)
T ss_dssp HHHHHHTTCCSEEEECCCC----------SCCCHHHHHHHHHHHHHHH---T--TSEEEEECSSGGGG
T ss_pred HHHHHHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHc---C--CCEEEEEeCCHHHH
Confidence 4556666789999999933 3456666667777776653 1 34466677765543
No 217
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=40.24 E-value=14 Score=41.36 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=51.0
Q ss_pred hhhcCchHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCC---CCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcC
Q psy6770 25 QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQT---GADREVQRILLELLNQMDGFDQTTNVKVIMATN 100 (362)
Q Consensus 25 ~~~~gese~~l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~---~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn 100 (362)
-.++...|+.|..+...++..+|++|+||-+.++.+...-.+. ..-.-..+.+++.|..|.+.-...++.+|.+.-
T Consensus 1488 ~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~ 1566 (1706)
T 3cmw_A 1488 CSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1566 (1706)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred EeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 3456667999999999999999999999999999987632211 111112466666666666544445666666543
No 218
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=40.00 E-value=19 Score=30.03 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCe--EEEeccccccc
Q psy6770 33 RMVRDVFRLAKENSPA--IIFIDEIDAIA 59 (362)
Q Consensus 33 ~~l~~~F~~a~~~~P~--II~iDeiD~l~ 59 (362)
...+.+...+....|. +|+|||...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 108 ELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred HHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 3344555566667899 99999999875
No 219
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=39.87 E-value=1.2e+02 Score=32.26 Aligned_cols=86 Identities=7% Similarity=0.108 Sum_probs=51.6
Q ss_pred CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEEccC-C
Q psy6770 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL-P 124 (362)
Q Consensus 46 ~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~i~~-P 124 (362)
++.+|++|+++... .+..+ .++.-||.||+.+.-.... . .....+.++. .
T Consensus 236 ~~~LlvlDd~~~~~-----------------------~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l 286 (1249)
T 3sfz_A 236 PRSLLILDDVWDPW-----------------------VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGL 286 (1249)
T ss_dssp CSCEEEEESCCCHH-----------------------HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSC
T ss_pred CCEEEEEecCCCHH-----------------------HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCC
Confidence 37999999998431 11222 2345688888876443211 1 1234577775 7
Q ss_pred CHHHHHHHHHHHHccCCCCCcCCHHHHHhcCCCCcH
Q psy6770 125 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISG 160 (362)
Q Consensus 125 ~~~~r~~il~~~~~~~~~~~~~dl~~la~~t~g~s~ 160 (362)
+.++-.+++................++++.+.|+..
T Consensus 287 ~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 287 GREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp CHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHH
Confidence 888888888877643322222236678888887744
No 220
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=38.94 E-value=20 Score=28.53 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.9
Q ss_pred HHHHHHhhhCCcEEEEechhhhhhhcC
Q psy6770 3 LCTSFDTELVTAFIRVVGSEFVQKYLG 29 (362)
Q Consensus 3 LakaiA~e~~~~~~~v~~s~l~~~~~g 29 (362)
|++|+|.|.+++++.|+..+-++.|.|
T Consensus 67 LveAlC~E~~I~lIkVdd~kkLgew~G 93 (146)
T 3cg6_A 67 LIQAFCCENDIDIVRVGDVQRLAAIVG 93 (146)
T ss_dssp HHHHHHHHTTCEEEEECCHHHHHHHC-
T ss_pred HHHHHHhhcCCCeEEeCchhHHHHHhC
Confidence 789999999999999999999999998
No 221
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=37.84 E-value=39 Score=28.33 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCeEEEeccccccccc
Q psy6770 35 VRDVFRLAKENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 35 l~~~F~~a~~~~P~II~iDeiD~l~~~ 61 (362)
+..+.+.+....|.+|+||++-.+...
T Consensus 108 ~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 108 LYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 334555566678999999999988743
No 222
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=37.14 E-value=21 Score=25.45 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYKKC 325 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~ 325 (362)
-++.++.+|...+-..++..|+.+|+..|+++.
T Consensus 43 ~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 43 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 577899999999999999999999999998764
No 223
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=36.35 E-value=96 Score=26.97 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=34.6
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+.. .+|.+|+.++.+
T Consensus 138 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~L~~~~~-------tviivtHd~~~~ 188 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPF----------ENVDAARRHVISRYIKEYGK-------EGILVTHELDML 188 (263)
T ss_dssp HHHHHHHTCCSEEEEECTT----------TTCCHHHHHHHHHHHHHSCS-------EEEEEESCGGGG
T ss_pred HHHHHHHhCCCEEEEECCc----------cccCHHHHHHHHHHHHHhcC-------cEEEEEcCHHHH
Confidence 4566777889999999932 34566666777777766532 567777766543
No 224
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=35.91 E-value=66 Score=27.70 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=34.9
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+.. .+..+|.+|++++.+
T Consensus 153 ~iAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETD----------SGLDIDALKVVARGVNAMRG----PNFGALVITHYQRIL 206 (250)
T ss_dssp HHHHHHHHCCSEEEEECGG----------GTTCHHHHHHHHHHHHHHCS----TTCEEEEECSSSGGG
T ss_pred HHHHHHHcCCCEEEEeCCC----------cCCCHHHHHHHHHHHHHHHh----cCCEEEEEecCHHHH
Confidence 3456666789999999943 34456566667777766632 244567777776543
No 225
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=35.64 E-value=55 Score=25.88 Aligned_cols=24 Identities=4% Similarity=0.091 Sum_probs=20.3
Q ss_pred CcHHHHHHhhhCCcEEEEechhhh
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFV 24 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~ 24 (362)
|.++++||..++.+++.++...+.
T Consensus 17 ST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 17 SGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp HHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred HHHHHHHHHhcCCCeEEeccchHh
Confidence 679999999999999988876554
No 226
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=34.97 E-value=95 Score=23.30 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 254 LPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 254 ~P~~~~r~~i~~~~l~~~~~~~~~~~~~la~~~~g~sgadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
+|...-| .|++.. +..++..++ .+.+.+ +.-.-++.++.+|...|-..++..|+.+|++-|+++...
T Consensus 8 lP~a~I~-Ri~r~~-g~~rIS~~a-~~~l~e----~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 8 IASSLIK-QIFSHY-VKTPVTRDA-YKIVEK----CSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp --CHHHH-HHHHHH-HCSCBCHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCHHHHH-HHHHHC-CCCccCHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 4555444 366666 444454432 233332 223356789999999999999999999999999998665
No 227
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=34.90 E-value=24 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=25.5
Q ss_pred HHHHHHhhhCCcEEEEechhhhhhhcC
Q psy6770 3 LCTSFDTELVTAFIRVVGSEFVQKYLG 29 (362)
Q Consensus 3 LakaiA~e~~~~~~~v~~s~l~~~~~g 29 (362)
|++|+|.|.+++++.|+..+-++.|.|
T Consensus 88 LVeAlC~E~~I~LIkV~d~kkLgew~G 114 (167)
T 3ffm_A 88 LIQAFCCENDIDIVRVGDVQRLAAIVG 114 (167)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHT
T ss_pred HHHHHHhhcCCCeEEeCCcchHHHHhC
Confidence 889999999999999999988888888
No 228
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=34.62 E-value=74 Score=27.71 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=34.4
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+. .. +..+|.+|..++.+
T Consensus 174 ~iAraL~~~p~lLlLDEPt----------s~LD~~~~~~l~~~l~~l~---~~-g~tviivtHd~~~~ 227 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESD----------SGLDIDALKVVADGVNSLR---DG-KRSFIIVTHYQRIL 227 (267)
T ss_dssp HHHHHHHHCCSEEEEESTT----------TTCCHHHHHHHHHHHHTTC---CS-SCEEEEECSSGGGG
T ss_pred HHHHHHHhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH---hc-CCEEEEEeeCHHHH
Confidence 3455666789999999933 3456666666677766553 22 44566777766543
No 229
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=32.26 E-value=37 Score=23.08 Aligned_cols=33 Identities=21% Similarity=0.092 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6770 291 GADINAICQEAGMHAVRENRYIVLPKDFEKGYK 323 (362)
Q Consensus 291 gadi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~ 323 (362)
-.-+..+..+|...|...++..|+.+|+.-|++
T Consensus 37 ~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 37 EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 345778899999999999999999999998864
No 230
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=31.15 E-value=1.3e+02 Score=23.08 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 294 INAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 294 i~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
|..+..+|...|...++..|+.+|+..|+...-..
T Consensus 45 I~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 45 AIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 55677788888888899999999999999997764
No 231
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=30.40 E-value=67 Score=28.26 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=35.4
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
.+..|-...|.++++||- .++-|......+.+++..+.. .. +.-+|.+|..++.+.
T Consensus 153 ~iAraL~~~P~lLlLDEP----------ts~LD~~~~~~i~~~l~~l~~--~~-g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEP----------TAGLDPMGVSEIMKLLVEMQK--EL-GITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHTTCCSEEEEECT----------TTTCCHHHHHHHHHHHHHHHH--HH-CCEEEEEESCCSSGG
T ss_pred HHHHHHHcCCCEEEEECc----------cccCCHHHHHHHHHHHHHHHh--hC-CCEEEEEecCHHHHH
Confidence 455566678999999993 234566566666666665531 11 445777888776553
No 232
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=30.06 E-value=62 Score=26.67 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 294 INAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 294 i~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
|..+..+|...|..+++..|+.+|+..|++.....
T Consensus 50 I~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 50 IHLISSEANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 44566677777888899999999999999987764
No 233
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=29.74 E-value=25 Score=29.46 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceeEEecCCCHHHH
Q psy6770 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 260 (362)
Q Consensus 222 ~~v~vi~aTn~~~~lD~a~~RpgRfd~~i~~~~P~~~~r 260 (362)
...-+|.+|+.++.||.++.. |++.++++..|....+
T Consensus 122 ~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~~~ 158 (199)
T 2r2a_A 122 QGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMGMR 158 (199)
T ss_dssp TTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSCCE
T ss_pred CCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcccCcc
Confidence 345678888889999999877 9999999998765443
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=29.03 E-value=28 Score=28.78 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=13.0
Q ss_pred CCeEEEecccccccc
Q psy6770 46 SPAIIFIDEIDAIAT 60 (362)
Q Consensus 46 ~P~II~iDeiD~l~~ 60 (362)
.|.+|+|||+..+..
T Consensus 105 ~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 105 NFALVVVDSITAHYR 119 (220)
T ss_dssp TEEEEEEECCCCCTT
T ss_pred CCCEEEEcCcHHHhh
Confidence 599999999998864
No 235
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=28.83 E-value=1.3e+02 Score=25.95 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=33.8
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 104 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ 104 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+.. ..+.-+|.+|+.++.
T Consensus 138 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~l~~---~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPT----------SALDLANQDIVLSLLIDLAQ---SQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHHTTCSEEEESSSS----------TTSCHHHHHHHHHHHHHHHH---TSCCEEEEEESCHHH
T ss_pred HHHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHH
Confidence 4456667789999999933 34566666667777766531 213446667776543
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=27.65 E-value=1.1e+02 Score=25.82 Aligned_cols=52 Identities=17% Similarity=0.391 Sum_probs=32.8
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 103 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~ 103 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+. .. +..+|.+|+.++
T Consensus 150 ~laral~~~p~lllLDEPt----------~~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 150 AIARALANEPILLFADEPT----------GNLDSANTKRVMDIFLKIN---EG-GTSIVMVTHERE 201 (224)
T ss_dssp HHHHHTTTCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHH
T ss_pred HHHHHHHcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHH
Confidence 4455566789999999933 3455666666667766653 12 345666777643
No 237
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=26.91 E-value=1.1e+02 Score=26.47 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=33.9
Q ss_pred HHHHHHHc------CCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCC
Q psy6770 38 VFRLAKEN------SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 104 (362)
Q Consensus 38 ~F~~a~~~------~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ 104 (362)
.+-.|-.. .|.++++|| ..++-|......+.+++..+. ...+.-+|.+|+..+.
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDE----------Pts~LD~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDE----------PTSALDLYHQQHTLRLLRQLT---RQEPLAVCCVLHDLNL 210 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECC----------CCSSCCHHHHHHHHHHHHHHH---HHSSEEEEEECSCHHH
T ss_pred HHHHHHhcccccCCCCCEEEEeC----------ccccCCHHHHHHHHHHHHHHH---HcCCCEEEEEEcCHHH
Confidence 34455555 899999999 233456666666666666553 2234567778877654
No 238
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=26.09 E-value=1.3e+02 Score=26.18 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=34.5
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 104 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ 104 (362)
.+..|-...|.++++||- .++-|......+.+++..+. .. +.-+|.+|..++.
T Consensus 169 ~lAraL~~~p~lllLDEP----------ts~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~ 221 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEP----------TSALDPEMVGEVLSVMKQLA---NE-GMTMVVVTHEMGF 221 (263)
T ss_dssp HHHHHHTTCCSEEEEEST----------TTTSCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHH
T ss_pred HHHHHHHCCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHH
Confidence 455666778999999993 23456666667777776653 12 4456777776544
No 239
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=25.83 E-value=1.2e+02 Score=26.24 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=34.2
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 104 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ 104 (362)
.+-.|-...|.++++||- .++-|......+.+++..+.. . +.-+|.+|+.++.
T Consensus 163 ~lAraL~~~p~lllLDEP----------ts~LD~~~~~~~~~~l~~l~~---~-g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEP----------TSALDPELVGEVLRIMQQLAE---E-GKTMVVVTHEMGF 215 (262)
T ss_dssp HHHHHHHTCCSEEEEEST----------TTTSCHHHHHHHHHHHHHHHH---T-TCCEEEECSCHHH
T ss_pred HHHHHHhcCCCEEEEeCC----------CccCCHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHHH
Confidence 455666778999999993 234566666677777766531 2 3346667776543
No 240
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=25.80 E-value=2.4e+02 Score=26.09 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=50.6
Q ss_pred cCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC--------ccccCCCcce
Q psy6770 45 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD--------PALLRPGRLD 116 (362)
Q Consensus 45 ~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld--------~al~r~gRf~ 116 (362)
..|+++++||+..++... .+..++.... +.++.++.+|-.+..+. .++.. -+.
T Consensus 278 ~~~~~~~lDE~~~l~~~~-------------~l~~~~~~~R----~~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~--n~~ 338 (437)
T 1e9r_A 278 KRRLWLFIDELASLEKLA-------------SLADALTKGR----KAGLRVVAGLQSTSQLDDVYGVKEAQTLRA--SFR 338 (437)
T ss_dssp TCCEEEEESCGGGSCBCS-------------SHHHHHHHCT----TTTEEEEEEESCHHHHHHHHCHHHHHHHHT--TCC
T ss_pred CccEEEEEEcccccccch-------------hHHHHHHHHh----ccCCEEEEEecCHHHHHHHHCHHHHHHHHh--ccC
Confidence 357999999999986421 2445555544 45778888888887776 35665 678
Q ss_pred eEEEccCC--CHHHHHHHHHHHHcc
Q psy6770 117 RKIEFPLP--DRRQKRLVFSTITAK 139 (362)
Q Consensus 117 ~~i~i~~P--~~~~r~~il~~~~~~ 139 (362)
..|.++.+ +.+....+ ...++.
T Consensus 339 ~~i~~~~~~~d~~ta~~~-s~~lG~ 362 (437)
T 1e9r_A 339 SLVVLGGSRTDPKTNEDM-SLSLGE 362 (437)
T ss_dssp EEEEEECCTTCHHHHHHH-HHHHCE
T ss_pred cEEEEeCCCCCHHHHHHH-HHHcCc
Confidence 88888887 66655544 444544
No 241
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=25.58 E-value=87 Score=26.63 Aligned_cols=53 Identities=21% Similarity=0.372 Sum_probs=33.6
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 103 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~ 103 (362)
.+..|-...|.++++||- .++-|......+.+++..+. ...+.-+|.+|++++
T Consensus 155 ~iAral~~~p~llllDEP----------ts~LD~~~~~~i~~~l~~l~---~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 155 AIARALANNPPIILADQP----------TWALDSKTGEKIMQLLKKLN---EEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHTTCCSEEEEEST----------TTTSCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHHHHcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH---HHcCCEEEEEcCCHH
Confidence 456666778999999993 23456656666666666553 112345777777764
No 242
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=25.51 E-value=59 Score=25.60 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCchHHHHHHHHhch
Q psy6770 292 ADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVRENRYIVLP 340 (362)
Q Consensus 292 adi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~~ 340 (362)
.-+..++.++...|-..++..|+.+|+.-++++.............++.
T Consensus 54 ~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~~el~ 102 (140)
T 3vh5_A 54 RQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSDELA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999888765554444444554443
No 243
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=24.90 E-value=91 Score=27.39 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=33.3
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 105 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~l 105 (362)
.+-.|-...|.++++||- .++-|......+.+++..+.. .+..|..|.+|..++.+
T Consensus 171 ~lAraL~~~p~lLlLDEP----------ts~LD~~~~~~l~~~l~~l~~--~g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEP----------AAGLDFIARESLLSILDSLSD--SYPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHHHHTCCSEEEEEST----------TTTCCHHHHHHHHHHHHHHHH--HCTTCEEEEEESCGGGC
T ss_pred HHHHHHhCCCCEEEEeCC----------ccccCHHHHHHHHHHHHHHHH--CCCEEEEEEEecCHHHH
Confidence 445666778999999993 234566666666777666531 11122116667765544
No 244
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=24.78 E-value=2.5e+02 Score=21.85 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=34.9
Q ss_pred HHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeEEE
Q psy6770 41 LAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 120 (362)
Q Consensus 41 ~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~i~ 120 (362)
.|-...|.++++||-- ++.|......+.+++..+.. . +..+|.+|+.++ + .+ .++.++.
T Consensus 76 ral~~~p~lllLDEPt----------~~LD~~~~~~l~~~l~~~~~---~-~~tiiivsH~~~-~----~~--~~d~ii~ 134 (148)
T 1f2t_B 76 LYLAGEISLLILDEPT----------PYLDEERRRKLITIMERYLK---K-IPQVILVSHDEE-L----KD--AADHVIR 134 (148)
T ss_dssp HHHHSSCSEEEEESCS----------CTTCHHHHHHHHHHHHHTGG---G-SSEEEEEESCGG-G----GG--GCSEEEE
T ss_pred HHHcCCCCEEEEECCC----------ccCCHHHHHHHHHHHHHHHc---c-CCEEEEEEChHH-H----HH--hCCEEEE
Confidence 3445679999999933 34455556666666665532 2 234556666542 2 22 4556666
Q ss_pred cc
Q psy6770 121 FP 122 (362)
Q Consensus 121 i~ 122 (362)
+.
T Consensus 135 l~ 136 (148)
T 1f2t_B 135 IS 136 (148)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 245
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=24.16 E-value=52 Score=30.80 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCC
Q psy6770 35 VRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR 101 (362)
Q Consensus 35 l~~~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~ 101 (362)
+..+.+.+....|.+|+||++-.++.....+. +......+.+.+++..+..+....++.||.++..
T Consensus 262 l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~-g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 262 LDAAAQMMSESRFSLIVVDSVMALYRTDFSGR-GELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHhcCCceEEecchhhhCchhhcCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 34444555667899999999988875431111 1111112333444444443323335556666554
No 246
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.04 E-value=1.4e+02 Score=25.65 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 104 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ 104 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+.. . +..+|.+|..++.
T Consensus 156 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~l~~---~-g~tiiivtHd~~~ 208 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPT----------SGLDVLNAREVRKILKQASQ---E-GLTILVSSHNMLE 208 (256)
T ss_dssp HHHHHHTTCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHHH---T-TCEEEEEECCHHH
T ss_pred HHHHHHHcCCCEEEEeCCc----------cccCHHHHHHHHHHHHHHHh---C-CCEEEEEcCCHHH
Confidence 4556667789999999932 34566666777777766531 2 3456667776543
No 247
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=23.36 E-value=91 Score=26.17 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=32.1
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld 106 (362)
.+-.|-...|.++++||--+ +-|......+.+++..+.. . +..+|.+|..++.+.
T Consensus 143 ~laraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~~~~---~-g~tiiivtHd~~~~~ 197 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVV----------AIDEDSKHKVLKSILEILK---E-KGIVIISSREELSYC 197 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTT----------TSCTTTHHHHHHHHHHHHH---H-HSEEEEEESSCCTTS
T ss_pred HHHHHHHhCCCEEEEECCCc----------CCCHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHHHHH
Confidence 45566667899999999442 2233334555555554431 1 234666777776554
No 248
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=23.36 E-value=2.8e+02 Score=22.14 Aligned_cols=44 Identities=5% Similarity=-0.028 Sum_probs=32.2
Q ss_pred CcHHHHHHhhhCCcEEEEechhhhhhhcCchHHHHHHHHHHHHHcCCeEE
Q psy6770 1 YLLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAII 50 (362)
Q Consensus 1 slLakaiA~e~~~~~~~v~~s~l~~~~~gese~~l~~~F~~a~~~~P~II 50 (362)
|.+...+|.+.+.|++.++...+. .......+.+....+...++
T Consensus 89 T~lT~~~a~~~~KP~l~i~l~~~~------~~~~~~~v~~wl~~~~i~vL 132 (158)
T 3imk_A 89 SALTEFFAEQYKKPCLHIDLDRIS------IEDAATLINSWTVSHHIQVL 132 (158)
T ss_dssp HHHHHHHHHHTTCCEEEEETTTSC------HHHHHHHHHHHHHHTTCCEE
T ss_pred hHHHHHHHHHhCCCEEEEeccccc------ccchHHHHHHHHHHCCceEE
Confidence 357788899999999999886642 23456677888888875555
No 249
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=22.78 E-value=1.2e+02 Score=23.21 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAG 327 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~ 327 (362)
-+++++++|...+-..++..|+..|+.-|+++...
T Consensus 80 ~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 80 FLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 35678888988888889999999999999987654
No 250
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=22.69 E-value=64 Score=24.17 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 292 ADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 292 adi~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
.-+..++.++...|-..++..|+.+|+.-++++....
T Consensus 54 ~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l 90 (107)
T 3b0b_B 54 RQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSL 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHH
Confidence 3456788999999999999999999999987765443
No 251
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=22.52 E-value=1.3e+02 Score=26.89 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=35.1
Q ss_pred HHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy6770 39 FRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK 118 (362)
Q Consensus 39 F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~~ld~al~r~gRf~~~ 118 (362)
+..+-...|.++++||-- .+-|......+..++..+. .... -+|.+|+.++ +.. .+|.+
T Consensus 265 ~a~~l~~~p~~lllDEp~----------~~LD~~~~~~l~~~l~~~~---~~~~-~vi~~sH~~~-----~~~--~~d~~ 323 (339)
T 3qkt_A 265 MSLYLAGEISLLILDEPT----------PYLDEERRRKLITIMERYL---KKIP-QVILVSHDEE-----LKD--AADHV 323 (339)
T ss_dssp HHHHTTTTTCEEEEECCC----------TTCCHHHHHHHHHHHHHTG---GGSS-EEEEEESCGG-----GGG--GCSEE
T ss_pred HHHHhcCCCCEEEEECCC----------CCCCHHHHHHHHHHHHHHH---hcCC-EEEEEEChHH-----HHH--hCCEE
Confidence 344445679999999944 2345555566666665543 2222 3555666543 222 45566
Q ss_pred EEcc
Q psy6770 119 IEFP 122 (362)
Q Consensus 119 i~i~ 122 (362)
+.+.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 252
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=22.35 E-value=95 Score=24.86 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCc
Q psy6770 293 DINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGM 328 (362)
Q Consensus 293 di~~~~~~a~~~a~~~~~~~v~~~~~~~a~~~~~~~ 328 (362)
=+..+..+|...|-..++..|+.+|++.|++..-|.
T Consensus 115 f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 115 ATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 356788889999999999999999999999987774
No 253
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=22.06 E-value=1.8e+02 Score=26.34 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=28.3
Q ss_pred HcC-CeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC
Q psy6770 44 ENS-PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 103 (362)
Q Consensus 44 ~~~-P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~ 103 (362)
... |.++++||..+= -+......+.+++..+.. . . -||.+|+.++
T Consensus 302 ~~~~~~~lllDEp~~~----------LD~~~~~~l~~~l~~~~~---~-~-~vi~~th~~~ 347 (371)
T 3auy_A 302 IGNRVECIILDEPTVY----------LDENRRAKLAEIFRKVKS---I-P-QMIIITHHRE 347 (371)
T ss_dssp HSSCCSEEEEESTTTT----------CCHHHHHHHHHHHHHCCS---C-S-EEEEEESCGG
T ss_pred hcCCCCeEEEeCCCCc----------CCHHHHHHHHHHHHHhcc---C-C-eEEEEEChHH
Confidence 567 999999998743 344455666666666532 2 2 3566666654
No 254
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=21.64 E-value=39 Score=28.00 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=18.5
Q ss_pred HHHHHHHHH-----HcCCeEEEeccccccccc
Q psy6770 35 VRDVFRLAK-----ENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 35 l~~~F~~a~-----~~~P~II~iDeiD~l~~~ 61 (362)
+..+...+. ...|.+|++||.-.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 109 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred HHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 334444444 568999999999887543
No 255
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=20.71 E-value=43 Score=33.31 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=26.4
Q ss_pred CCChhhhhhhhhhhhhhhhhhhhccCCeEEEEecCCC
Q psy6770 197 PLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRA 233 (362)
Q Consensus 197 ~~~~~~~k~~~~~~~l~~~~~~~~~~~v~vi~aTn~~ 233 (362)
..|||+|||.++.+++..+... ...+|++.+.||..
T Consensus 201 ~GppGTGKT~~~~~~i~~l~~~-~~~~ilv~a~tn~A 236 (624)
T 2gk6_A 201 QGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIA 236 (624)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTS-SSCCEEEEESSHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCcHHH
Confidence 3489999999888877665432 34678888888753
No 256
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.65 E-value=1.8e+02 Score=24.63 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=32.6
Q ss_pred HHHHHHHcCCeEEEeccccccccccCCCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEEEcCCCC
Q psy6770 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 103 (362)
Q Consensus 38 ~F~~a~~~~P~II~iDeiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~l~~~~~v~vi~tTn~~~ 103 (362)
.+-.|-...|.++++||-- ++-|......+.+++..+.. . +..+|.+|+.++
T Consensus 149 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~~~~---~-g~tvi~vtHd~~ 200 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPS----------LGLAPILVSEVFEVIQKINQ---E-GTTILLVEQNAL 200 (240)
T ss_dssp HHHHHHTTCCSEEEEECTT----------TTCCHHHHHHHHHHHHHHHH---T-TCCEEEEESCHH
T ss_pred HHHHHHHcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHH
Confidence 3455566789999999932 34566666667777766532 1 334566677654
No 257
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=20.20 E-value=1.4e+02 Score=28.12 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=16.3
Q ss_pred HHHHcCCeEEEeccccccccc
Q psy6770 41 LAKENSPAIIFIDEIDAIATK 61 (362)
Q Consensus 41 ~a~~~~P~II~iDeiD~l~~~ 61 (362)
.++...|.+|+||++..+...
T Consensus 308 l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 308 LKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHTTTCCCEEEEECGGGSCCS
T ss_pred HHHHcCCCEEEEccHHHhccC
Confidence 334568999999999998743
Done!