RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6770
(362 letters)
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 349 bits (898), Expect = e-119
Identities = 142/163 (87%), Positives = 154/163 (94%)
Query: 14 AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREV 73
FIRVVGSEFVQKYLGEGPRMVRDVFRLA+EN+P+IIFIDE+D+IATKRFDAQTGADREV
Sbjct: 206 TFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREV 265
Query: 74 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 133
QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F
Sbjct: 266 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 325
Query: 134 STITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
TIT+KMNLS+EVDLED+V+RP++IS ADI AICQE M R
Sbjct: 326 QTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVR 368
Score = 216 bits (551), Expect = 6e-67
Identities = 92/163 (56%), Positives = 115/163 (70%), Gaps = 26/163 (15%)
Query: 200 DRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 259
DR +R++ + +M+ N++VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ
Sbjct: 262 DREVQRILLELLN-QMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 320
Query: 260 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFE 319
KRL+F TIT+KMNLS+EVDLED+V+RP++IS ADI AICQEAGM AVR+NRY++LPKDFE
Sbjct: 321 KRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFE 380
Query: 320 KGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
KGYK +K + +++FY
Sbjct: 381 KGYKT-------------------------VVRKTDRDYDFYS 398
Score = 110 bits (277), Expect = 3e-27
Identities = 44/48 (91%), Positives = 47/48 (97%)
Query: 169 EVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 216
+VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F TIT+KMN
Sbjct: 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN 333
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 291 bits (746), Expect = 5e-96
Identities = 105/164 (64%), Positives = 121/164 (73%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FIRVVGSE VQKY+GEG R+VR++F LA+E +P+IIFIDEIDAI KRFD+ T DREVQ
Sbjct: 213 FIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQ 272
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R +LELLNQ+DGFD NVKVIMATNR D LDPALLRPGR DRKIEFPLPD + +
Sbjct: 273 RTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
T KMNL+D+VDLE + SGAD+ AIC E M R
Sbjct: 333 IHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER 376
Score = 164 bits (418), Expect = 4e-47
Identities = 60/103 (58%), Positives = 71/103 (68%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
GN++VIMATNR D LDPALLRPGR DRKIEFPLPD + + T KMNL+D+VDLE
Sbjct: 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL 348
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
+ SGAD+ AIC EAGM A+RE R V +DF K +K
Sbjct: 349 LARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 251 bits (644), Expect = 2e-80
Identities = 101/168 (60%), Positives = 136/168 (80%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E F+RVVGSE +QKYLG+GP++VR++FR+A+EN+P+I+FIDEIDAI TK
Sbjct: 232 LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTK 291
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R+DA +G ++E+QR +LELLNQ+DGFD +VKVIMATNR ++LDPAL+RPGR+DRKIEF
Sbjct: 292 RYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEF 351
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
P PD + KR +F T+KM L+++VDLE+++ D +SGADI AIC E
Sbjct: 352 PNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTE 399
Score = 138 bits (350), Expect = 3e-37
Identities = 58/103 (56%), Positives = 78/103 (75%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G+++VIMATNR ++LDPAL+RPGR+DRKIEFP PD + KR +F T+KM L+++VDLE+
Sbjct: 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEE 380
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
++ D +SGADI AIC EAG+ A+RE R V DF K +K
Sbjct: 381 FIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 235 bits (603), Expect = 1e-74
Identities = 96/158 (60%), Positives = 117/158 (74%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FIRVVGSE VQK++GEG R+VR++F LA+E +P+IIFIDEIDAIA KR D+ T DREVQ
Sbjct: 193 FIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQ 252
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R L++LL +MDGFD NVK+I ATNR D LDPA+LRPGR DR IE PLPD + +
Sbjct: 253 RTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILK 312
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
T KMNL+D+VDLE+ + SGAD+ AIC E M
Sbjct: 313 IHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGM 350
Score = 126 bits (319), Expect = 5e-33
Identities = 54/103 (52%), Positives = 70/103 (67%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
GN+++I ATNR D LDPA+LRPGR DR IE PLPD + + T KMNL+D+VDLE+
Sbjct: 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEE 328
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
+ SGAD+ AIC EAGM A+R++R V +DF K +K
Sbjct: 329 LAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEK 371
Score = 68.3 bits (168), Expect = 9e-13
Identities = 27/47 (57%), Positives = 31/47 (65%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 216
+I ATNR D LDPA+LRPGR DR IE PLPD + + T KMN
Sbjct: 273 IIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN 319
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many
proteins may score above the trusted cutoff because an
internal.
Length = 364
Score = 212 bits (542), Expect = 5e-66
Identities = 99/171 (57%), Positives = 119/171 (69%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E FIRVVGSE V+KY+GEG R+VR++F LAKE +P+IIFIDEIDAIA K
Sbjct: 171 LLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAK 230
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R D+ T DREVQR L++LL ++DGFD NVKVI ATNR D LDPALLRPGR DR IE
Sbjct: 231 RTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEV 290
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
PLPD + + T KM L+++VDLE + SGAD+ AIC E M
Sbjct: 291 PLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGM 341
Score = 109 bits (275), Expect = 4e-27
Identities = 55/103 (53%), Positives = 66/103 (64%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
GN++VI ATNR D LDPALLRPGR DR IE PLPD + + T KM L+++VDLE
Sbjct: 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEA 319
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
+ SGAD+ AIC EAGM A+RE R V DF K +K
Sbjct: 320 IAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362
Score = 61.7 bits (150), Expect = 1e-10
Identities = 28/47 (59%), Positives = 30/47 (63%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 216
VI ATNR D LDPALLRPGR DR IE PLPD + + T KM
Sbjct: 264 VIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK 310
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 152 bits (385), Expect = 8e-42
Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 5/164 (3%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FI V GSE + K++GE + +R++F A++ +P+IIFIDEID++A+ R D +
Sbjct: 304 FISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGR---GPSEDGSGR 360
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R++ +LL ++DG ++ V VI ATNR D LDPALLRPGR DR I PLPD ++ +F
Sbjct: 361 RVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFK 420
Query: 135 TITAKMN--LSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
L+++VDLE+ + SGADI A+ +E + R
Sbjct: 421 IHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALR 464
Score = 98.7 bits (246), Expect = 9e-23
Identities = 69/183 (37%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Query: 1 YLLCTSFDTELVTA-------FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFID 53
+ + T L A F+ + G E + KY+GE +R++F A++ +P+IIFID
Sbjct: 24 HGPPGTGKTLLARALANEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83
Query: 54 EIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPG 113
EIDA+A KR Q +R R++ +LL MDG + V VI ATNR D LDPA RPG
Sbjct: 84 EIDALAPKRSSDQGEVER---RVVAQLLALMDGLKRG-QVIVIGATNRPDGLDPAKRRPG 139
Query: 114 RLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMA 173
R DR+IE LPD + + T M L + AR SGAD+ A+ +E +
Sbjct: 140 RFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALR 199
Query: 174 TNR 176
R
Sbjct: 200 ELR 202
Score = 96.8 bits (241), Expect = 5e-22
Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 215 MNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN-- 272
++ + + VI ATNR D LDPALLRPGR DR I PLPD ++ +F
Sbjct: 370 LDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP 429
Query: 273 LSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLP-KDFEKGYKK 324
L+++VDLE+ + SGADI A+ +EA + A+RE R + DF KK
Sbjct: 430 LAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKK 482
Score = 71.4 bits (175), Expect = 1e-13
Identities = 45/136 (33%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 187 PGRLDRKIEFPLPDRRQK------RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPAL 240
P + L +R R V + + A M L G + VI ATNR D LDPA
Sbjct: 77 PSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALM-DGLKRGQVIVIGATNRPDGLDPAK 135
Query: 241 LRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQE 300
RPGR DR+IE LPD + + T M L + AR SGAD+ A+ +E
Sbjct: 136 RRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKE 195
Query: 301 AGMHAVRENRYIVLPK 316
A + +R +V
Sbjct: 196 AALRELRRAIDLVGEY 211
Score = 44.4 bits (105), Expect = 6e-05
Identities = 28/75 (37%), Positives = 35/75 (46%)
Query: 143 SDEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 202
SD+ ++E V + VI ATNR D LDPA RPGR DR+IE LPD
Sbjct: 94 SDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEA 153
Query: 203 QKRLVFSTITAKMNF 217
+ + T M
Sbjct: 154 GRLEILQIHTRLMFL 168
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 154 bits (390), Expect = 1e-41
Identities = 81/182 (44%), Positives = 108/182 (59%), Gaps = 2/182 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + TE FI V G E + K++GE + +R++FR A++ +PAIIF DEIDAIA
Sbjct: 502 LLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPA 561
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R RI+ +LL +MDG + +NV VI ATNR D LDPALLRPGR DR I
Sbjct: 562 R--GARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILV 619
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRADTLD 181
P PD ++ +F T M L+++VDLE+ + +GADI A+C+E MA R
Sbjct: 620 PPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGS 679
Query: 182 PA 183
PA
Sbjct: 680 PA 681
Score = 133 bits (337), Expect = 2e-34
Identities = 80/195 (41%), Positives = 113/195 (57%), Gaps = 11/195 (5%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E FI + G E + KY GE +R++F+ A+EN+P+IIFIDEIDAIA K
Sbjct: 227 LLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPK 286
Query: 62 RFDAQTGADREVQ-RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 120
R + TG EV+ R++ +LL MDG V VI ATNR D LDPAL RPGR DR+I
Sbjct: 287 R-EEVTG---EVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIV 342
Query: 121 FPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRADTL 180
+PD+R ++ + T M L+++VDL+ GAD+ A+ +E MA R
Sbjct: 343 IRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALR---- 398
Query: 181 DPALLRPGRLDRKIE 195
+R G+++ + E
Sbjct: 399 --RFIREGKINFEAE 411
Score = 100 bits (250), Expect = 4e-23
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 266
+ + + +M+ + + N+ VI ATNR D LDPALLRPGR DR I P PD ++ +F
Sbjct: 574 IVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKI 633
Query: 267 ITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326
T M L+++VDLE+ + +GADI A+C+EA M A+RE+ + E G ++
Sbjct: 634 HTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFL 693
Query: 327 GMHAVRENRYIVLPKDFEKGYK 348
V + F + K
Sbjct: 694 -------KDLKVEMRHFLEALK 708
Score = 77.6 bits (191), Expect = 1e-15
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 203 QKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 262
+KR+V +T M+ + G + VI ATNR D LDPAL RPGR DR+I +PD+R ++
Sbjct: 295 EKRVVAQLLTL-MDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKE 353
Query: 263 VFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVR 307
+ T M L+++VDL+ GAD+ A+ +EA M A+R
Sbjct: 354 ILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALR 398
Score = 58.8 bits (142), Expect = 2e-09
Identities = 26/48 (54%), Positives = 29/48 (60%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNF 217
VI ATNR D LDPALLRPGR DR I P PD ++ +F T M
Sbjct: 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL 640
Score = 50.7 bits (121), Expect = 7e-07
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 215
VI ATNR D LDPAL RPGR DR+I +PD+R ++ + T M
Sbjct: 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM 362
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 151 bits (383), Expect = 2e-41
Identities = 68/155 (43%), Positives = 93/155 (60%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
F + GS+FV+ ++G G VRD+F AK+N+P IIFIDEIDA+ +R G + E +
Sbjct: 116 FFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDERE 175
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
+ L +LL +MDGF T V VI ATNR D LDPALLRPGR DR++ LPD + + +
Sbjct: 176 QTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK 235
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQE 169
L+ +VDL+ R SGAD+ + E
Sbjct: 236 VHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNE 270
Score = 86.2 bits (214), Expect = 2e-18
Identities = 38/95 (40%), Positives = 53/95 (55%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
VI ATNR D LDPALLRPGR DR++ LPD + + + L+ +VDL+ R
Sbjct: 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARR 255
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
SGAD+ + EA + A R+N+ + D E+
Sbjct: 256 TPGFSGADLANLLNEAALLAARKNKTEITMNDIEE 290
Score = 56.5 bits (137), Expect = 7e-09
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPD 200
VI ATNR D LDPALLRPGR DR++ LPD
Sbjct: 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 144 bits (366), Expect = 2e-38
Identities = 84/206 (40%), Positives = 109/206 (52%), Gaps = 17/206 (8%)
Query: 13 TAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADRE 72
F + GSEFV+ ++G G VRD+F+ AKENSP I+FIDEIDA+ +R G + E
Sbjct: 242 VPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDE 301
Query: 73 VQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132
++ L +LL +MDGF V VI ATNR D LD ALLRPGR DR+I LPDR + +
Sbjct: 302 REQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDI 361
Query: 133 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEV-IMATNRA------DTLDPALL 185
LS +V LE R SGAD+ + E I+ R +D A
Sbjct: 362 LKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTA-- 419
Query: 186 RPGRLDRKIE----FPLPDRRQKRLV 207
+DR I PL D + KRL+
Sbjct: 420 ----IDRVIAGLEGTPLEDSKNKRLI 441
Score = 70.5 bits (173), Expect = 3e-13
Identities = 37/95 (38%), Positives = 48/95 (50%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
VI ATNR D LD ALLRPGR DR+I LPDR + + LS +V LE R
Sbjct: 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARR 383
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
SGAD+ + EA + R + + K+ +
Sbjct: 384 TPGFSGADLANLLNEAAILTARRKKATITMKEIDT 418
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 130 bits (329), Expect = 3e-37
Identities = 61/123 (49%), Positives = 79/123 (64%), Gaps = 5/123 (4%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
L + EL FI + GSE V KY+GE + +R++F AK+ +P +IFIDEIDA+A
Sbjct: 13 TLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGS 72
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMATNRADTLDPALLRPGRLDRKIE 120
R G D E +R++ +LL ++DGF + V VI ATNR D LDPALLR GR DR IE
Sbjct: 73 RGS---GGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLR-GRFDRIIE 128
Query: 121 FPL 123
FPL
Sbjct: 129 FPL 131
Score = 48.0 bits (115), Expect = 4e-07
Identities = 23/35 (65%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 220 NIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPL 254
++ + VI ATNR D LDPALLR GR DR IEFPL
Sbjct: 98 SLSKVIVIAATNRPDKLDPALLR-GRFDRIIEFPL 131
Score = 47.2 bits (113), Expect = 9e-07
Identities = 23/29 (79%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPL 198
VI ATNR D LDPALLR GR DR IEFPL
Sbjct: 104 VIAATNRPDKLDPALLR-GRFDRIIEFPL 131
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 132 bits (333), Expect = 5e-34
Identities = 66/149 (44%), Positives = 90/149 (60%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
F + GS+FV+ ++G G VRD+F AK+N+P IIFIDEIDA+ +R G + E +
Sbjct: 211 FFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDERE 270
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
+ L +LL +MDGF V VI ATNR D LDPALLRPGR DR+I LPD + + +
Sbjct: 271 QTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILK 330
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADI 163
L+++VDL+ SGAD+
Sbjct: 331 VHAKNKPLAEDVDLKKIARGTPGFSGADL 359
Score = 78.1 bits (193), Expect = 1e-15
Identities = 38/95 (40%), Positives = 53/95 (55%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
VI ATNR D LDPALLRPGR DR+I LPD + + + L+++VDL+
Sbjct: 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARG 350
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
SGAD+ + EA + A R N+ + +D E+
Sbjct: 351 TPGFSGADLANLLNEAALLAARRNKKEITMRDIEE 385
Score = 56.6 bits (137), Expect = 9e-09
Identities = 23/38 (60%), Positives = 26/38 (68%)
Query: 168 QEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 205
VI ATNR D LDPALLRPGR DR+I LPD + +
Sbjct: 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGRE 326
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 121 bits (304), Expect = 4e-30
Identities = 66/177 (37%), Positives = 97/177 (54%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E F + GS+FV+ ++G G VRD+F AK+ +P IIFIDEIDA+ +
Sbjct: 200 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R G E ++ L ++L +MDGF+ + VI ATNR D LDPALLRPGR DR++
Sbjct: 260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 319
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
LPD R + + ++ L+ ++D SGAD+ + E + R +
Sbjct: 320 GLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376
Score = 72.8 bits (178), Expect = 5e-14
Identities = 39/99 (39%), Positives = 54/99 (54%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
VI ATNR D LDPALLRPGR DR++ LPD R + + ++ L+ ++D
Sbjct: 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARG 352
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
SGAD+ + EA + A R N+ +V +FEK K
Sbjct: 353 TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 391
Score = 51.2 bits (122), Expect = 4e-07
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 208
VI ATNR D LDPALLRPGR DR++ LPD R + +
Sbjct: 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQIL 331
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as
shown for Mycobacterium tuberculosis, some proteins are
modified by ligation between an epsilon-amino group of a
lysine side chain and the C-terminal carboxylate of the
ubiquitin-like protein Pup. This modification leads to
protein degradation by the archaeal-like proteasome
found in the Actinobacteria. Members of this protein
family belong to the AAA family of ATPases and tend to
be clustered with the genes for Pup, the Pup ligase
PafA, and structural components of the proteasome. This
protein forms hexameric rings with ATPase activity
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 512
Score = 104 bits (261), Expect = 1e-24
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 13/163 (7%)
Query: 14 AFIRVVGSEFVQKYLGEGPRMVRDVF----RLAKENSPAIIFIDEIDAIATKRFDAQTGA 69
F+ + G E + KY+GE R +R +F A E P I+F DE+D++ R +G
Sbjct: 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFDEMDSLFRTR---GSGV 309
Query: 70 DREVQR-ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 128
+V+ ++ +LL ++DG + NV VI A+NR D +DPA+LRPGRLD KI PD
Sbjct: 310 SSDVETTVVPQLLAEIDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEA 369
Query: 129 KRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVI 171
+F+ L+D++ L + +A D A A+ Q V+
Sbjct: 370 AADIFAK-----YLTDDLPLPEDLAAHDGDREATAAALIQRVV 407
Score = 58.6 bits (142), Expect = 2e-09
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 221 IGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLE 280
+ N+ VI A+NR D +DPA+LRPGRLD KI PD +F+ L+D++ L
Sbjct: 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFAK-----YLTDDLPLP 385
Query: 281 DYVARPDRISGADINAICQEA--GMHAVRE-NRYIVL 314
+ +A D A A+ Q ++A E NRY+ +
Sbjct: 386 EDLAAHDGDREATAAALIQRVVDALYARSEANRYVEV 422
Score = 53.6 bits (129), Expect = 7e-08
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 210
VI A+NR D +DPA+LRPGRLD KI PD +F+
Sbjct: 336 VIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFAK 376
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 99.9 bits (249), Expect = 1e-23
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 6/163 (3%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIA-T 60
++ + E + V +E + +++G+G R + +++ A++ +P I+FIDE+DAIA
Sbjct: 166 MMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALD 225
Query: 61 KRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 120
+R+ G +V I+ LL ++DG + V I ATNR + LDPA+ R + +IE
Sbjct: 226 RRYQELRG---DVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAI--RSRFEEEIE 280
Query: 121 FPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADI 163
F LP+ ++ + K L + DL A+ +SG DI
Sbjct: 281 FKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDI 323
Score = 54.4 bits (131), Expect = 3e-08
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 227 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARP 286
I ATNR + LDPA+ R + +IEF LP+ ++ + K L + DL A+
Sbjct: 258 IAATNRPELLDPAI--RSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKT 315
Query: 287 DRISGADINAICQEAGMH-AVRENRYIVLPKDFEKGYKK 324
+SG DI + +H A+ E+R V +D EK KK
Sbjct: 316 KGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354
Score = 33.2 bits (76), Expect = 0.21
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 171 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 215
I ATNR + LDPA+ R + +IEF LP+ ++ + K
Sbjct: 258 IAATNRPELLDPAI--RSRFEEEIEFKLPNDEERLEILEYYAKKF 300
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 63.7 bits (155), Expect = 3e-12
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 15 FIRVVGSEFVQKYLGE---GPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADR 71
F+ + S+ ++ + G +VR +F LA++ P ++FIDEID+++ R
Sbjct: 50 FLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS-----------R 98
Query: 72 EVQRILLELLNQ-MDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 123
Q LL +L D NV+VI ATNR D RLD +I PL
Sbjct: 99 GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151
Score = 37.1 bits (86), Expect = 0.005
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 195 EFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPL 254
E R + + + + ++ N++VI ATNR D RLD +I PL
Sbjct: 92 EIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151
Score = 30.6 bits (69), Expect = 0.61
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPL 198
VI ATNR D RLD +I PL
Sbjct: 123 VIGATNRPLLGDLDRALYDRLDIRIVIPL 151
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 58.5 bits (141), Expect = 1e-10
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 8 DTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQT 67
D ++ +K G G +R LA++ P ++ +DEI ++
Sbjct: 40 DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQ---- 95
Query: 68 GADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 125
E +LLE L + N+ VI+ TN L PALLR R DR+I L
Sbjct: 96 ----EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
Score = 37.7 bits (87), Expect = 0.002
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 194 IEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFP 253
I L ++ L+ + + + NL VI+ TN L PALLR R DR+I
Sbjct: 87 ITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLL 145
Query: 254 LPD 256
L
Sbjct: 146 LIL 148
Score = 30.0 bits (67), Expect = 0.88
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPD 200
VI+ TN L PALLR R DR+I L
Sbjct: 119 VILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 44.6 bits (106), Expect = 5e-05
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 29 GEGPRMVRDVFRLAKENSPAIIFIDEID-AIATKRFDAQTGADREVQRILLELLNQMDGF 87
GE +R + R+A+ SP I++IDEID A + +G V + L++
Sbjct: 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE---- 356
Query: 88 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM--NLSDE 145
+ + V V+ N D L +LR GR D LP ++ +F K +
Sbjct: 357 -KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKK 415
Query: 146 VDLEDYVARPDRISGADI 163
D++ ++ SGA+I
Sbjct: 416 YDIKKLSKLSNKFSGAEI 433
Score = 35.4 bits (82), Expect = 0.042
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM--NLSDEVDLEDYV 283
V+ N D L +LR GR D LP ++ +F K + D++
Sbjct: 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLS 422
Query: 284 ARPDRISGADINAICQEAGMHAVRENR 310
++ SGA+I EA A E R
Sbjct: 423 KLSNKFSGAEIEQSIIEAMYIAFYEKR 449
Score = 28.1 bits (63), Expect = 7.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 208
V+ N D L +LR GR D LP ++ +F
Sbjct: 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIF 401
>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU;
Provisional.
Length = 443
Score = 40.1 bits (95), Expect = 0.001
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 49 IIFIDEIDAIATKRFDAQTGAD--RE-VQRILL 78
I+FIDEID IA + +G D RE VQR LL
Sbjct: 252 IVFIDEIDKIAAR--GGSSGPDVSREGVQRDLL 282
>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 444
Score = 37.2 bits (87), Expect = 0.009
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 49 IIFIDEIDAIATKRFDAQTGADRE-VQRILLELL 81
I+FIDEID IA + RE VQR LL L+
Sbjct: 253 IVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLV 286
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 36.3 bits (84), Expect = 0.019
Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 31/167 (18%)
Query: 44 ENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM-------DGFDQTTNVKVI 96
I+ +DEI+ A EVQ LLE L + VI
Sbjct: 110 AAVRVILLLDEINR-----------APPEVQNALLEALEERQVTVPGLTTIRLPPPFIVI 158
Query: 97 MATNRAD-----TLDPALLRPGRLDRKIEFPLPD-RRQKRLVFSTITAKMNLSDEVDLED 150
N + L ALL R +I PD ++R++ + + L E ++
Sbjct: 159 ATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKP 216
Query: 151 YVARPDRISGADI---NAICQEVI--MATNRADTLDPALLRPGRLDR 192
++ + + + EVI + T A + + G R
Sbjct: 217 VLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPR 263
>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This Pfam entry
includes some of the AAA proteins not detected by the
pfam00004 model.
Length = 168
Score = 34.1 bits (79), Expect = 0.053
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 25/64 (39%)
Query: 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELL----------NQMDGFDQTTNVKVI 96
+I+ IDEI+ VQ LL++L ++D N I
Sbjct: 76 YSIVLIDEIEKAH-----------PGVQNDLLQILEGGTLTDKQGRKVD----FRNTLFI 120
Query: 97 MATN 100
M N
Sbjct: 121 MTGN 124
>gnl|CDD|214396 CHL00206, ycf2, Ycf2; Provisional.
Length = 2281
Score = 33.3 bits (76), Expect = 0.23
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 17/105 (16%)
Query: 39 FRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD----QTTNVK 94
F LAK SP II+I I + E + L LL D T N+
Sbjct: 1725 FELAKAMSPCIIWIPNIHDLNVN----------ESNYLSLGLLVNSLSRDCERCSTRNIL 1774
Query: 95 VIMATNRADTLDPALLRPGRLDRKIEFP---LPDRRQKRLVFSTI 136
VI +T+ +DPAL+ P +L+ I+ +P +R+ S
Sbjct: 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT 1819
Score = 28.7 bits (64), Expect = 6.9
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 220 NIGNLQVIMATNRADTLDPALLRPGRLDRKIEFP---LPDRRQKRLVFSTI 267
+ N+ VI +T+ +DPAL+ P +L+ I+ +P +R+ S
Sbjct: 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT 1819
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 30.3 bits (69), Expect = 0.59
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 24/79 (30%)
Query: 46 SPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLN-----QMDGF----DQTTNVKVI 96
I +DEI+ A+ +V LL LL+ +G ++I
Sbjct: 66 EGEIAVLDEINR-----------ANPDVLNSLLSLLDERRLLLPEGGELVKAAPDGFRLI 114
Query: 97 MATNRADT----LDPALLR 111
N D L PAL
Sbjct: 115 ATMNPLDRGLNELSPALRS 133
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit.
This model represents the ATPase subunit of HslVU, while
the proteasome-related peptidase subunit is HslV.
Residues 54-61 of the model contain a P-loop ATP-binding
motif. Cys-287 of E. coli (position 308 in the seed
alignment), studied in MEDLINE:98389714, is Ser in other
members of the seed alignment [Protein fate, Protein
folding and stabilization].
Length = 441
Score = 31.7 bits (72), Expect = 0.67
Identities = 21/36 (58%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 49 IIFIDEIDAIATKRFDAQTGAD--RE-VQRILLELL 81
IIFIDEID IA K +GAD RE VQR LL ++
Sbjct: 250 IIFIDEIDKIAKK--GESSGADVSREGVQRDLLPIV 283
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 31.3 bits (72), Expect = 0.86
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 49 IIFIDEIDAIATK 61
I++IDEID IA K
Sbjct: 176 IVYIDEIDKIARK 188
>gnl|CDD|220778 pfam10487, Nup188, Nucleoporin subcomplex protein binding to Pom34.
This is one of the many peptides that make up the
nucleoporin complex (NPC), and is found across
eukaryotes. The Nup188 subcomplex
(Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six
that make up the NPC, and as such is symmetrically
localised on both faces of the NPC at the nuclear end,
being integrally bound to the C-terminus of Pom34p.
Length = 931
Score = 30.2 bits (68), Expect = 2.0
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 21 SEFVQKYLGEGPRMVRDVFRLAKENSP---AIIFIDEIDAIATKRFDAQTGADREVQRIL 77
S ++ YL E R RD+ + + A++ + D R R V IL
Sbjct: 64 SNLLECYLLERYRGTRDILKTLLTDPRQSQALMDLKLADYYYEDRL---CKILRCVLHIL 120
Query: 78 LELLNQMDGFD 88
L+ +
Sbjct: 121 TYFLDNRHPYT 131
>gnl|CDD|214850 smart00842, FtsA, Cell division protein FtsA. FtsA is essential
for bacterial cell division, and co-localizes to the
septal ring with FtsZ. It has been suggested that the
interaction of FtsA-FtsZ has arisen through coevolution
in different bacterial strains.
Length = 187
Score = 29.0 bits (66), Expect = 2.8
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 272 NLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYI--VLPKDF----EKGYKKC 325
N+S V + D I+ DI+ + + A A+ +R I VLP+++ ++G K
Sbjct: 83 NVSGVVAIPDK-----EITQEDIDRVLEAAKAVALPPDREILHVLPQEYILDGQEGIKDP 137
Query: 326 AGMHAVR 332
GM VR
Sbjct: 138 IGMSGVR 144
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 29.1 bits (66), Expect = 4.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 49 IIFIDEIDAIATK 61
II+IDEID IA K
Sbjct: 165 IIYIDEIDKIARK 177
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 28.6 bits (65), Expect = 5.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 32 PRMVRDVFRLAKENSPAIIFID 53
P +VR+ FRLA+E P + ++
Sbjct: 135 PEVVREAFRLAEEERPGAVHLE 156
>gnl|CDD|211414 cd11573, GH99_GH71_like, Glycoside hydrolase families 71, 99, and
related domains. This superfamily of glycoside
hydrolases contains families GH71 and GH99 (following
the CAZY nomenclature), as well as other members with
undefined function and specificity.
Length = 284
Score = 28.2 bits (63), Expect = 5.9
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 27 YLGEGPRMVRDVFRLAKENSPAIIFID 53
L + + + A + PA+I I
Sbjct: 214 ILRRDGQRLHSMLEAALKAGPAMIQIA 240
>gnl|CDD|132132 TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH1 system
associated. Members of this family include a match to
the pfam00534 Glycosyl transferases group 1 domain.
Nearly all are found in species that encode the
PEP-CTERM/exosortase system predicted to act in protein
sorting in a number of Gram-negative bacteria. In
particular, these transferases are found proximal to a
particular variant of exosortase, EpsH1, which appears
to travel with a conserved group of genes summarized by
Genome Property GenProp0652. The nature of the sugar
transferase reaction catalyzed by members of this clade
is unknown and may conceivably be variable with respect
to substrate by species, but we hypothesize a conserved
substrate.
Length = 374
Score = 28.5 bits (64), Expect = 5.9
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 147 DLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 206
DLED++ P ++ A I+ I V D P R DR P + +
Sbjct: 146 DLEDWLRGPVKVPPAKIHQIYNGV----------DTERFHPSRGDRSPILPPDFFADESV 195
Query: 207 VFSTITAKMNFMLNIGNL--QVIMATNRADTLDPAL 240
V T+ ++ + + L + + L
Sbjct: 196 VVGTV-GRLQAVKDQPTLVRAFALLVRQLPEGAERL 230
>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit
(clpX). A member of the ATP-dependent proteases, ClpX
has ATP-dependent chaperone activity and is required for
specific ATP-dependent proteolytic activities expressed
by ClpPX. The gene is also found to be involved in
stress tolerance in Bacillus subtilis and is essential
for the efficient acquisition of genes specifying type
IA and IB restriction [Protein fate, Protein folding and
stabilization, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 413
Score = 28.6 bits (64), Expect = 6.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 49 IIFIDEIDAIATKRFDAQTGAD---REVQRILLELL 81
II+IDEID I+ K + D VQ+ LL+++
Sbjct: 184 IIYIDEIDKISRKSENPSITRDVSGEGVQQALLKII 219
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 28.2 bits (62), Expect = 6.4
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 14/59 (23%)
Query: 41 LAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMAT 99
L+ +++ IDE + G ++ R L+ELL ++ ++I T
Sbjct: 205 LSALPKGSLLLIDEPEN----------GLHPKLLRKLVELLKEL----SEKGAQLIFTT 249
>gnl|CDD|219319 pfam07171, MlrC_C, MlrC C-terminus. This family represents the
C-terminus (approximately 200 residues) of the product
of a bacterial gene cluster that is involved in the
degradation of the cyanobacterial toxin microcystin LR.
Many members of this family are hypothetical proteins.
Length = 177
Score = 27.7 bits (62), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 219 LNIGNLQVIMATNRADTLDPALLRPGRLDRK 249
+ IG + VI+++NR T DP R +D
Sbjct: 102 VRIGGIDVILSSNRTQTYDPDDFRALGIDPG 132
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The
ATP-dependent DNA helicase RecQ of E. coli is about 600
residues long. This model represents bacterial proteins
with a high degree of similarity in domain architecture
and in primary sequence to E. coli RecQ. The model
excludes eukaryotic and archaeal proteins with RecQ-like
regions, as well as more distantly related bacterial
helicases related to RecQ [DNA metabolism, DNA
replication, recombination, and repair].
Length = 591
Score = 28.5 bits (64), Expect = 6.7
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 24 VQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ 83
++ Y E R RD + AI+ D KR Q+ AD + ++I E L
Sbjct: 305 LESYYQEAGRAGRD-----GLPAEAILLYSPADIALLKRRIEQSEADDDYKQIEREKLRA 359
Query: 84 MDGFDQTT 91
M + +T
Sbjct: 360 MIAYCETQ 367
>gnl|CDD|224719 COG1806, COG1806, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 273
Score = 27.6 bits (62), Expect = 9.8
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 243 PGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARP---DRISGADINAICQ 299
PG + I P PD R K + + + RP D ++ IC
Sbjct: 29 PGVKFKAITHPFPDIRSKAQLVEVL-------ILAAYAPGIVRPTIVDSEVRPELREICA 81
Query: 300 EAGMHAV 306
EAG V
Sbjct: 82 EAGAPCV 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.396
Gapped
Lambda K H
0.267 0.0868 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,236,702
Number of extensions: 1950657
Number of successful extensions: 1664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1636
Number of HSP's successfully gapped: 96
Length of query: 362
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 264
Effective length of database: 6,590,910
Effective search space: 1740000240
Effective search space used: 1740000240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.6 bits)