RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6770
(362 letters)
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 287 bits (736), Expect = 2e-96
Identities = 92/164 (56%), Positives = 118/164 (71%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FIRVVGSE V+K++GEG +V+D+F+LAKE +P+IIFIDEIDAIA KR DA TG DREVQ
Sbjct: 79 FIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQ 138
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R L++LL +MDGFD +VK+I ATNR D LDPA+LRPGR DR IE P PD + + +
Sbjct: 139 RTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILK 198
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
T KMNL+++V+LE+ + GA++ AIC E M R
Sbjct: 199 IHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242
Score = 165 bits (420), Expect = 5e-49
Identities = 49/103 (47%), Positives = 68/103 (66%)
Query: 222 GNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 281
G++++I ATNR D LDPA+LRPGR DR IE P PD + + + T KMNL+++V+LE+
Sbjct: 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEE 214
Query: 282 YVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
+ GA++ AIC EAGM+A+RE R V DF K +K
Sbjct: 215 IAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 185 bits (471), Expect = 2e-56
Identities = 58/159 (36%), Positives = 87/159 (54%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FI + G E + + GE VR++F A++ +P ++F DE+D+IA R
Sbjct: 77 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 136
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R++ ++L +MDG NV +I ATNR D +DPA+LRPGRLD+ I PLPD + + +
Sbjct: 137 RVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 196
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMA 173
K ++ +VDLE + SGAD+ ICQ
Sbjct: 197 ANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 235
Score = 124 bits (314), Expect = 2e-33
Identities = 46/143 (32%), Positives = 72/143 (50%)
Query: 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 266
V + I +M+ M N+ +I ATNR D +DPA+LRPGRLD+ I PLPD + + +
Sbjct: 138 VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 197
Query: 267 ITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326
K ++ +VDLE + SGAD+ ICQ A A+RE+ + ++ E+ A
Sbjct: 198 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSA 257
Query: 327 GMHAVRENRYIVLPKDFEKGYKN 349
+ + FE+ +
Sbjct: 258 MEVEEDDPVPEIRRDHFEEAMRF 280
Score = 68.8 bits (169), Expect = 3e-13
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 215
+I ATNR D +DPA+LRPGRLD+ I PLPD + + + K
Sbjct: 157 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 202
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 188 bits (479), Expect = 1e-55
Identities = 67/175 (38%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
L+ + E F + G E + K GE +R F A++N+PAIIFIDE+DAIA K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R +R RI+ +LL MDG Q +V V+ ATNR +++DPAL R GR DR+++
Sbjct: 313 REKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+PD + + T M L+D+VDLE GAD+ A+C E + R
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Score = 114 bits (286), Expect = 2e-28
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 203 QKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 262
++R+V S + M+ + ++ V+ ATNR +++DPAL R GR DR+++ +PD +
Sbjct: 321 ERRIV-SQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 263 VFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENR 310
+ T M L+D+VDLE GAD+ A+C EA + A+R+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 179 bits (455), Expect = 4e-54
Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 20/190 (10%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----KENSPAIIFIDEIDA 57
C ++ I + E GE +++R +R A ++ + +FI+++DA
Sbjct: 51 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110
Query: 58 IATKR--FDAQTGADREVQRILLELLN-----QMDGFD---QTTNVKVIMATNRADTLDP 107
A + T ++ V L+ + + Q+ G + V +I+ N TL
Sbjct: 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 170
Query: 108 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAIC 167
L+R GR+++ P + R + + +D V ED V D G I+
Sbjct: 171 PLIRDGRMEKFYWAPTREDRIG------VCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFG 224
Query: 168 QEVIMATNRA 177
+
Sbjct: 225 ALRARVYDDE 234
Score = 99.5 bits (248), Expect = 4e-24
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 221 IGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLE 280
+ +I+ N TL L+R GR+++ P + R + + +D V E
Sbjct: 153 NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG------VCTGIFRTDNVPAE 206
Query: 281 DYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
D V D G I+ E R V EK K
Sbjct: 207 DVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDK 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 186 bits (475), Expect = 3e-53
Identities = 58/159 (36%), Positives = 87/159 (54%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FI + G E + + GE VR++F A++ +P ++F DE+D+IA R
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R++ ++L +MDG NV +I ATNR D +DPA+LRPGRLD+ I PLPD + + +
Sbjct: 599 RVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 658
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMA 173
K ++ +VDLE + SGAD+ ICQ
Sbjct: 659 ANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 697
Score = 146 bits (369), Expect = 8e-39
Identities = 65/162 (40%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
F + G E + K GE +R F A++N+PAIIFIDE+DAIA KR +R
Sbjct: 266 FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER--- 322
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
RI+ +LL MDG Q +V V+ ATNR +++DPAL R GR DR+++ +PD + +
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
T M L+D+VDLE GAD+ A+C E + R
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Score = 122 bits (308), Expect = 8e-31
Identities = 46/139 (33%), Positives = 71/139 (51%)
Query: 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 266
V + I +M+ M N+ +I ATNR D +DPA+LRPGRLD+ I PLPD + + +
Sbjct: 600 VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659
Query: 267 ITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCA 326
K ++ +VDLE + SGAD+ ICQ A A+RE+ + ++ E+ A
Sbjct: 660 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSA 719
Query: 327 GMHAVRENRYIVLPKDFEK 345
+ + FE+
Sbjct: 720 MEVEEDDPVPEIRRDHFEE 738
Score = 92.5 bits (230), Expect = 1e-20
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 203 QKRLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 262
++R+V S + M+ + ++ V+ ATNR +++DPAL R GR DR+++ +PD +
Sbjct: 321 ERRIV-SQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 263 VFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGY 322
+ T M L+D+VDLE GAD+ A+C EA + A+R+ ++ +D
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDA 439
Query: 323 KKCAGMHAVRENRYIVLPKDFEK 345
+ + V DF
Sbjct: 440 EVMNSLA--------VTMDDFRW 454
Score = 68.7 bits (168), Expect = 7e-13
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 216
+I ATNR D +DPA+LRPGRLD+ I PLPD + + + K
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 665
Score = 56.3 bits (136), Expect = 8e-09
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMN 216
V+ ATNR +++DPAL R GR DR+++ +PD + + T M
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK 389
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 171 bits (437), Expect = 1e-51
Identities = 66/160 (41%), Positives = 96/160 (60%), Gaps = 8/160 (5%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FI V G E + Y+GE R VR VF+ AK ++P +IF DE+DA+ +R D +TGA
Sbjct: 72 FISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA---SV 128
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R++ +LL +MDG + V ++ ATNR D +DPA+LRPGRLD+ + LP + +
Sbjct: 129 RVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILK 188
Query: 135 TIT---AKMNLSDEVDLEDYVA--RPDRISGADINAICQE 169
TIT K L +V+LE R D +GAD++A+ +E
Sbjct: 189 TITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVRE 228
Score = 106 bits (267), Expect = 8e-27
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT---AKMNLSDEVDLEDY 282
++ ATNR D +DPA+LRPGRLD+ + LP + + TIT K L +V+LE
Sbjct: 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAI 208
Query: 283 VA--RPDRISGADINAICQEAGMHAVREN-----------RYIVLPKDFEKGYKK 324
R D +GAD++A+ +EA + A+R+ V K FE+ +KK
Sbjct: 209 AGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKK 263
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 157 bits (400), Expect = 1e-45
Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
Query: 9 TELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68
TE + F V S+ V K++GE ++V+ +F +A+EN P+IIFID++DA+ R + ++
Sbjct: 73 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE 132
Query: 69 ADREVQRILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 127
A R RI ELL QM+G + + V V+ ATN LD A+ R R +R+I PLPD
Sbjct: 133 ASR---RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 187
Query: 128 QKRLVFSTITAKM-NLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+ +F + + D A + SG+DI + ++ +M R
Sbjct: 188 ARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 237
Score = 80.5 bits (199), Expect = 3e-17
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM-NLSDEVDLEDYVA 284
V+ ATN LD A+ R R +R+I PLPD + +F + + D A
Sbjct: 157 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGA 214
Query: 285 RPDRISGADINAICQEAGMHAVRE 308
+ SG+DI + ++A M +R+
Sbjct: 215 MTEGYSGSDIAVVVKDALMQPIRK 238
Score = 49.7 bits (119), Expect = 6e-07
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI 227
V+ ATN LD A+ R R +R+I PLPD + +F +L + + +
Sbjct: 157 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTL 212
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 155 bits (393), Expect = 2e-44
Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
L + TE + F V S+ V K++GE ++V+ +F +A+EN P+IIFID++DA+
Sbjct: 99 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 158
Query: 62 RFDAQTGADREVQRILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 120
R + ++ A R RI ELL QM+G + + V V+ ATN LD A+ R R +R+I
Sbjct: 159 RGEGESEASR---RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIY 213
Query: 121 FPLPDRRQKRLVFSTITAKM-NLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
PLPD + +F ++ + D A + SG+DI + ++ +M R
Sbjct: 214 IPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270
Score = 80.3 bits (198), Expect = 5e-17
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM-NLSDEVDLEDYVA 284
V+ ATN LD A+ R R +R+I PLPD + +F ++ + D A
Sbjct: 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGA 247
Query: 285 RPDRISGADINAICQEAGMHAVRE 308
+ SG+DI + ++A M +R+
Sbjct: 248 MTEGYSGSDIAVVVKDALMQPIRK 271
Score = 49.1 bits (117), Expect = 1e-06
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI 227
V+ ATN LD A+ R R +R+I PLPD + +F +L + + +
Sbjct: 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTL 245
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 154 bits (391), Expect = 2e-44
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
F + S+ V K+LGE ++V+++F+LA+EN P+IIFIDEID++ R + ++ A R
Sbjct: 74 FFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR--- 130
Query: 75 RILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 133
RI E L QM G + V+ ATN LD A+ R R +++I PLP+ + +F
Sbjct: 131 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMF 188
Query: 134 STITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMATNR 176
S E D + + D SGADI+ I ++ +M R
Sbjct: 189 KLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 232
Score = 82.0 bits (203), Expect = 9e-18
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVA 284
V+ ATN LD A+ R R +++I PLP+ + +F S E D +
Sbjct: 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGR 209
Query: 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKKCAGMHAVRENRYIVLPKDFE 344
+ D SGADI+ I ++A M VR+ + F+K + + +
Sbjct: 210 KTDGYSGADISIIVRDALMQPVRK---VQSATHFKKVRGPSRADPNHLVDDLLTPCSPGD 266
Query: 345 KGYKNNTKKDESEHE 359
G T D +
Sbjct: 267 PGAIEMTWMDVPGDK 281
Score = 49.3 bits (118), Expect = 7e-07
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI 227
V+ ATN LD A+ R R +++I PLP+ + +F L + + +
Sbjct: 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFREL 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 150 bits (382), Expect = 2e-43
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 9 TELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68
TE F+ + + KY+G+G ++VR +F +A+ P+IIFIDE+D++ ++R ++
Sbjct: 76 TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135
Query: 69 ADREVQRILLELLNQMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 125
A R R+ E L + DG + V+ ATNR LD A LR R +++ LPD
Sbjct: 136 ASR---RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPD 190
Query: 126 RRQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMA------TNRAD 178
+ + L+ + + K D L D SG+D+ A+ ++ + +
Sbjct: 191 EQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK 250
Query: 179 TLDPALLRP 187
LD + +R
Sbjct: 251 CLDISAMRA 259
Score = 80.0 bits (198), Expect = 3e-17
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVA 284
V+ ATNR LD A LR R +++ LPD + + L+ + + K D L
Sbjct: 162 VLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 219
Query: 285 RPDRISGADINAICQEAGMHAVRE 308
D SG+D+ A+ ++A + +RE
Sbjct: 220 ITDGYSGSDLTALAKDAALEPIRE 243
Score = 51.5 bits (124), Expect = 1e-07
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI 227
V+ ATNR LD A LR R +++ LPD + + L+ + + K L+ L+ +
Sbjct: 162 VLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRL 217
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 151 bits (384), Expect = 5e-43
Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 14/188 (7%)
Query: 9 TELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68
++ F + S K++GEG +MVR +F +A+ PA+IFIDEID++ ++R D +
Sbjct: 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHE 198
Query: 69 ADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 126
+ R RI E L Q+DG + V+ ATNR +D A R RL +++ PLP+
Sbjct: 199 SSR---RIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEA 253
Query: 127 RQKRLVFSTITAK-MNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR------ADT 179
++ + + +K E ++E V + D SGAD+ +C+E + R T
Sbjct: 254 SARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIAT 313
Query: 180 LDPALLRP 187
+ P +RP
Sbjct: 314 ITPDQVRP 321
Score = 78.7 bits (194), Expect = 2e-16
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK-MNLSDEVDLEDYVA 284
V+ ATNR +D A R RL +++ PLP+ ++ + + +K E ++E V
Sbjct: 224 VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQ 281
Query: 285 RPDRISGADINAICQEAGMHAVRE 308
+ D SGAD+ +C+EA + +R
Sbjct: 282 QSDAFSGADMTQLCREASLGPIRS 305
Score = 48.2 bits (115), Expect = 2e-06
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI 227
V+ ATNR +D A R RL +++ PLP+ ++ + + +K L+ ++ I
Sbjct: 224 VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQI 279
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 147 bits (373), Expect = 2e-42
Identities = 63/161 (39%), Positives = 91/161 (56%), Gaps = 9/161 (5%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGA---DR 71
F+ + G+EFV+ G G VR +F+ A+ +P I++IDEIDA+ KR +G +
Sbjct: 67 FLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEE 126
Query: 72 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 131
E + L +LL +MDG T +V V+ +TNRAD LD AL+RPGRLDR + LP +++R
Sbjct: 127 E--QTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERRE 184
Query: 132 VFSTITAKMNLSDEVDLE-DYVAR--PDRISGADINAICQE 169
+F + L+ +A P SGADI IC E
Sbjct: 185 IFEQHLKSLKLTQSSTFYSQRLAELTPG-FSGADIANICNE 224
Score = 89.2 bits (222), Expect = 9e-21
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLE-DYVA 284
V+ +TNRAD LD AL+RPGRLDR + LP +++R +F + L+ +A
Sbjct: 148 VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLA 207
Query: 285 R--PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
P SGADI IC EA +HA RE V +FE
Sbjct: 208 ELTPG-FSGADIANICNEAALHAAREGHTSVHTLNFEY 244
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 152 bits (384), Expect = 2e-42
Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
F + S+ V K+LGE ++V+++F+LA+EN P+IIFIDEID++ R + ++ A R
Sbjct: 196 FFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR--- 252
Query: 75 RILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 133
RI E L QM G + V+ ATN LD A+ R R +++I PLP+ + +F
Sbjct: 253 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMF 310
Query: 134 STITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMATNR 176
S E D ++ + D SGADI+ I ++ +M R
Sbjct: 311 RLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354
Score = 80.4 bits (198), Expect = 7e-17
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVA 284
V+ ATN LD A+ R R +++I PLP+ + +F S E D ++
Sbjct: 274 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGR 331
Query: 285 RPDRISGADINAICQEAGMHAVRE 308
+ D SGADI+ I ++A M VR+
Sbjct: 332 KTDGYSGADISIIVRDALMQPVRK 355
Score = 48.8 bits (116), Expect = 2e-06
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI 227
V+ ATN LD A+ R R +++I PLP+ + +F L + Q +
Sbjct: 274 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQEL 329
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 148 bits (374), Expect = 3e-41
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 8/171 (4%)
Query: 9 TELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG 68
E F + + KY+GEG ++VR +F +A+E P+IIFID++D++ +R + +
Sbjct: 170 AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHD 229
Query: 69 ADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 126
A R R+ E L + DG V V+ ATNR LD A+LR R +++ LP+
Sbjct: 230 ASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNE 284
Query: 127 RQKRLVFSTITAKMNLS-DEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+ L+ + K + +L D SG+D+ A+ ++ + R
Sbjct: 285 ETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 335
Score = 77.2 bits (190), Expect = 6e-16
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS-DEVDLEDYVA 284
V+ ATNR LD A+LR R +++ LP+ + L+ + K + +L
Sbjct: 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLAR 312
Query: 285 RPDRISGADINAICQEAGMHAVRE 308
D SG+D+ A+ ++A + +RE
Sbjct: 313 MTDGYSGSDLTALAKDAALGPIRE 336
Score = 49.1 bits (117), Expect = 1e-06
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVI 227
V+ ATNR LD A+LR R +++ LP+ + L+ + K L L +
Sbjct: 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQL 310
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 144 bits (366), Expect = 4e-41
Identities = 66/164 (40%), Positives = 94/164 (57%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FI GS+FV+ ++G G VRD+F AK ++P I+FIDEIDA+ KR G + E +
Sbjct: 101 FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE 160
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
+ L +LL +MDGF++ T + V+ ATNR D LDPALLRPGR DR+I PD + + +
Sbjct: 161 QTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 220
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
L+++VDL R GAD+ + E + R
Sbjct: 221 IHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 264
Score = 87.0 bits (216), Expect = 1e-19
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR D LDPALLRPGR DR+I PD + + + L+++VDL R
Sbjct: 181 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 240
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
GAD+ + EA + A RE R + KD E+
Sbjct: 241 TPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 275
Score = 59.7 bits (145), Expect = 2e-10
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 202
V+ ATNR D LDPALLRPGR DR+I PD +
Sbjct: 181 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 213
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 143 bits (363), Expect = 6e-41
Identities = 66/164 (40%), Positives = 94/164 (57%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FI GS+FV+ ++G G VRD+F AK ++P I+FIDEIDA+ KR G + E +
Sbjct: 77 FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE 136
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
+ L +LL +MDGF++ T + V+ ATNR D LDPALLRPGR DR+I PD + + +
Sbjct: 137 QTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 196
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
L+++VDL R GAD+ + E + R
Sbjct: 197 IHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 240
Score = 85.5 bits (212), Expect = 2e-19
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR D LDPALLRPGR DR+I PD + + + L+++VDL R
Sbjct: 157 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 216
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
GAD+ + EA + A RE R + KD E+
Sbjct: 217 TPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 251
Score = 59.3 bits (144), Expect = 2e-10
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 202
V+ ATNR D LDPALLRPGR DR+I PD +
Sbjct: 157 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 142 bits (361), Expect = 1e-40
Identities = 63/164 (38%), Positives = 93/164 (56%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
F + GS+FV+ ++G G VRD+F AK+ +P IIFIDEIDA+ +R G E +
Sbjct: 73 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDERE 132
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
+ L ++L +MDGF+ + VI ATNR D LDPALLRPGR DR++ LPD R + +
Sbjct: 133 QTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILK 192
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
++ L+ ++D SGAD+ + E + R +
Sbjct: 193 VHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236
Score = 85.8 bits (213), Expect = 2e-19
Identities = 39/99 (39%), Positives = 54/99 (54%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
VI ATNR D LDPALLRPGR DR++ LPD R + + ++ L+ ++D
Sbjct: 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARG 212
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
SGAD+ + EA + A R N+ +V +FEK K
Sbjct: 213 TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251
Score = 59.3 bits (144), Expect = 3e-10
Identities = 23/33 (69%), Positives = 25/33 (75%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 202
VI ATNR D LDPALLRPGR DR++ LPD R
Sbjct: 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 137 bits (347), Expect = 2e-38
Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKR-FDAQTGADREV 73
F + GS F++ ++G G VRD+F AK+ +P+IIFIDEIDAI R + E
Sbjct: 72 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDER 131
Query: 74 QRILLELLNQMDGFD-QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132
++ L +LL +MDGF + V V+ ATNR + LDPAL+RPGR DR++ PD + +
Sbjct: 132 EQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEI 191
Query: 133 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
+ L+++V+L++ ++GAD+ I E + R +
Sbjct: 192 LKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN 237
Score = 86.9 bits (216), Expect = 9e-20
Identities = 31/99 (31%), Positives = 55/99 (55%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR + LDPAL+RPGR DR++ PD + + + L+++V+L++
Sbjct: 154 VLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKL 213
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
++GAD+ I EA + A R N+ V + ++ ++
Sbjct: 214 TAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252
Score = 60.0 bits (146), Expect = 2e-10
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 202
V+ ATNR + LDPAL+RPGR DR++ PD
Sbjct: 154 VLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 135 bits (342), Expect = 5e-36
Identities = 62/144 (43%), Positives = 86/144 (59%)
Query: 20 GSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLE 79
GS+FV+ ++G G VRD+F AK ++P I+FIDEIDA+ R G E ++ L +
Sbjct: 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141
Query: 80 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAK 139
LL +MDGFD + V+ ATNR D LDPALLRPGR D+KI PD ++ + T
Sbjct: 142 LLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN 201
Query: 140 MNLSDEVDLEDYVARPDRISGADI 163
L+++V+LE R GAD+
Sbjct: 202 KPLAEDVNLEIIAKRTPGFVGADL 225
Score = 83.8 bits (208), Expect = 6e-18
Identities = 40/95 (42%), Positives = 54/95 (56%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR D LDPALLRPGR D+KI PD ++ + T L+++V+LE R
Sbjct: 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKR 216
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
GAD+ + EA + A RE R + KDFE+
Sbjct: 217 TPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Score = 62.6 bits (153), Expect = 6e-11
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 202
V+ ATNR D LDPALLRPGR D+KI PD
Sbjct: 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDML 189
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 135 bits (343), Expect = 6e-36
Identities = 64/149 (42%), Positives = 90/149 (60%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FI GS+FV+ ++G G VRD+F AK ++P I+FIDEIDA+ KR G + E +
Sbjct: 92 FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE 151
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
+ L +LL +MDGF++ T + V+ ATNR D LDPALLRPGR DR+I PD + + +
Sbjct: 152 QTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 211
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADI 163
L+++VDL R GAD+
Sbjct: 212 IHARGKPLAEDVDLALLAKRTPGFVGADL 240
Score = 84.6 bits (210), Expect = 4e-18
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
V+ ATNR D LDPALLRPGR DR+I PD + + + L+++VDL R
Sbjct: 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 231
Query: 286 PDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
GAD+ + EA + A RE R + KD E+
Sbjct: 232 TPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 266
Score = 62.2 bits (152), Expect = 6e-11
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 202
V+ ATNR D LDPALLRPGR DR+I PD +
Sbjct: 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 204
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 115 bits (291), Expect = 1e-32
Identities = 69/107 (64%), Positives = 75/107 (70%), Gaps = 25/107 (23%)
Query: 256 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLP 315
DRRQKRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE+GM AVRENRYIVL
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 316 KDFEKGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
KDFEK YK KKDE EHEFYK
Sbjct: 62 KDFEKAYKT-------------------------VIKKDEQEHEFYK 83
Score = 70.8 bits (174), Expect = 9e-16
Identities = 42/54 (77%), Positives = 48/54 (88%)
Query: 125 DRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
DRRQKRL+FSTIT+KMNLS+EVDLEDYVARPD+ISGADIN+ICQE M R +
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55
Score = 28.4 bits (64), Expect = 0.94
Identities = 15/17 (88%), Positives = 17/17 (100%)
Query: 200 DRRQKRLVFSTITAKMN 216
DRRQKRL+FSTIT+KMN
Sbjct: 2 DRRQKRLIFSTITSKMN 18
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 111 bits (279), Expect = 1e-30
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 23/104 (22%)
Query: 259 QKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDF 318
++RL+F TI +KM+L+ E DL+ + R D +SGA I AI QEAG+ AVR+NRY++L D
Sbjct: 2 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDL 61
Query: 319 EKGYKKCAGMHAVRENRYIVLPKDFEKGYKNNTKKDESEHEFYK 362
E+ Y + + +FYK
Sbjct: 62 EEAYAT-------------QVKT----------DNTVDKFDFYK 82
Score = 67.4 bits (165), Expect = 2e-14
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 128 QKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
++RL+F TI +KM+L+ E DL+ + R D +SGA I AI QE + R +
Sbjct: 2 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 52
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 109 bits (274), Expect = 5e-28
Identities = 22/166 (13%), Positives = 55/166 (33%), Gaps = 11/166 (6%)
Query: 15 FIRVVGSEFVQKYLGEG-PRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREV 73
FI++ + + + + ++ +F A ++ + + +D+I+ + R
Sbjct: 92 FIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV----PIGPRFS 147
Query: 74 QRILLELLNQMDGFD-QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLV 132
+L LL + Q + +I T+R D L + I +P+ +
Sbjct: 148 NLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ-EMEMLNAFSTTIH--VPNIATGEQL 204
Query: 133 FSTITAKMNLSDEVDLEDYVAR-PDRISGADINAICQEVIMATNRA 177
+ N D + + + I + + M+
Sbjct: 205 LEALELLGNFKD-KERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD 249
Score = 46.7 bits (111), Expect = 5e-06
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 7/91 (7%)
Query: 223 NLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDY 282
L +I T+R D L + I +P+ + + N D +
Sbjct: 167 KLLIIGTTSRKDVLQ-EMEMLNAFSTTIH--VPNIATGEQLLEALELLGNFKD-KERTTI 222
Query: 283 VAR---PDRISGADINAICQEAGMHAVRENR 310
+ G + E + E R
Sbjct: 223 AQQVKGKKVWIGIKKLLMLIEMSLQMDPEYR 253
Score = 39.3 bits (92), Expect = 0.001
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNF 217
+I T+R D L + I +P+ + + NF
Sbjct: 170 IIGTTSRKDVLQ-EMEMLNAFSTTIH--VPNIATGEQLLEALELLGNF 214
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 80.6 bits (200), Expect = 3e-19
Identities = 23/75 (30%), Positives = 36/75 (48%)
Query: 250 IEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVREN 309
P+ + + + KMNL+ ++L SGA++ +C EAGM+A+RE
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65
Query: 310 RYIVLPKDFEKGYKK 324
R V +DFE K
Sbjct: 66 RVHVTQEDFEMAVAK 80
Score = 52.1 bits (126), Expect = 4e-09
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 119 IEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
P+ + + + KMNL+ ++L SGA++ +C E M R
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 73.3 bits (181), Expect = 8e-17
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 253 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYI 312
P P+ + + + KMNL+ ++L SGA++ +C EAGM+A+RE R
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH 60
Query: 313 VLPKDFEKGYKK 324
V +DFE K
Sbjct: 61 VTQEDFEMAVAK 72
Score = 45.9 bits (110), Expect = 5e-07
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
P P+ + + + KMNL+ ++L SGA++ +C E M R
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 57
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 52.6 bits (127), Expect = 3e-09
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 268 TAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
+ M++ + E +GA++ ++C EAGM A+R R + KDF K
Sbjct: 14 SKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLK 66
Score = 29.1 bits (66), Expect = 0.57
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 137 TAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
+ M++ + E +GA++ ++C E M RA
Sbjct: 14 SKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 55
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 4e-04
Identities = 54/391 (13%), Positives = 108/391 (27%), Gaps = 109/391 (27%)
Query: 36 RDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLE-------------LLN 82
+D+ + ++ F+D D + + E+ I++ LL+
Sbjct: 19 KDILSVFEDA-----FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 83 Q--------MDGFDQTTNVKVIMATNRADTLDPALLRP------GRLDRKIEFPLPDRRQ 128
+ ++ + N K +M+ + + P+++ RL +
Sbjct: 74 KQEEMVQKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNV 131
Query: 129 KR--LVFSTITAKMNLSDEVDLEDY-------------VARPDRISGADINAI------- 166
R A + L ++ V ++ I
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 167 CQE----VIMATNRADTLDPALLRPGRLDRKIEFPLPD--RRQKRLVFSTITAKMNFML- 219
C + M +DP I+ + +RL+ S +L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 220 NIGNLQV---------IMATNR----ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 266
N+ N + I+ T R D L A LD L K L+
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKY 310
Query: 267 ITAKMN-LSDEVD-------------LEDYVARPDRISGADINAICQEAGMHAVRENRYI 312
+ + L EV + D +A D + + + + E+
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK------LTTIIESSLN 364
Query: 313 VL-PKDFEKGYKKCAGMHAVRENRYIVLPKD 342
VL P ++ K + + + V P
Sbjct: 365 VLEPAEYRKMFDRLS-----------VFPPS 384
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 43/268 (16%), Positives = 73/268 (27%), Gaps = 103/268 (38%)
Query: 29 GEGPRMVRDVFRLAKENSPAIIFIDEIDA--IATKRFDAQTGADREVQRILLE----LLN 82
GE + +R EN A+IF +D K F + LL+
Sbjct: 1678 GEKGKRIR-------ENYSAMIFETIVDGKLKTEKIFK---EINEHSTSYTFRSEKGLLS 1727
Query: 83 QMDGFDQTTNVKV-IMATN-------RADTLDP--------------ALLRPGRLDRKIE 120
T + + ++ L P AL +
Sbjct: 1728 A------TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV----- 1776
Query: 121 FPLPDRRQKRLVF---STITAKMNLSDEVDLEDY--VA-RPDRI----SGADINAICQEV 170
+ +VF T+ + DE+ +Y +A P R+ S + + + V
Sbjct: 1777 MSIES--LVEVVFYRGMTMQVAVP-RDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 171 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMA- 229
T ++ N+ N+ N Q + A
Sbjct: 1834 GKRTG--WLVEIV--------------------------------NY--NVENQQYVAAG 1857
Query: 230 TNRA-DTLDPALLRPGRLDRKIEF-PLP 255
RA DT+ L +KI+ L
Sbjct: 1858 DLRALDTVTNVLNFIKL--QKIDIIELQ 1883
Score = 39.3 bits (91), Expect = 0.002
Identities = 69/428 (16%), Positives = 120/428 (28%), Gaps = 172/428 (40%)
Query: 10 ELVTAFIRVVGS-------------------EFVQKYLGEGPRMVRDVFRLAKENSPAII 50
ELV F+ V S EF YL D+ ++ A
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-----NDI------HALAAK 107
Query: 51 FIDEIDAIATKR-------FDAQTGADREVQR----ILLELLNQMDGFDQTTNVKVIMAT 99
+ E D K A+ A R + L + +G N + ++A
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG--EG-----NAQ-LVAI 159
Query: 100 -----NRADTLDPALLR------PGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDL 148
N D + LR + I+F L+ +T+ A+ + +++
Sbjct: 160 FGGQGNTDDYFEE--LRDLYQTYHVLVGDLIKFS--AETLSELIRTTLDAEKVFTQGLNI 215
Query: 149 EDYVARPDRISGAD----------INAICQEV-IMATNRADTLDPALLRP---GRLDR-- 192
+++ P D + + Q + T + P LR G
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 193 -------------------------KIEFPLPDRRQKRLVFSTITAKM------------ 215
+ F + R + +++ +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 216 NFMLNIGNL---QV---IMATNRADTLDP------AL----------------------L 241
+ ML+I NL QV + TN L +L L
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNS--HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 242 R----PGRLDR-KIEFPLPDRRQKRLVFST----ITAKMN---LSDEVDL--EDYVARPD 287
R P LD+ +I F +++L FS + + + L DL +D V
Sbjct: 394 RKAKAPSGLDQSRIPF-----SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 288 RISGADIN 295
+ DI
Sbjct: 449 SFNAKDIQ 456
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 36.5 bits (85), Expect = 0.009
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 49 IIFIDEIDAIATKRFDAQTGAD--RE-VQRILLELL 81
I+FIDEID I K +GAD RE VQR LL L+
Sbjct: 119 IVFIDEIDKICKK--GEYSGADVSREGVQRDLLPLV 152
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 35.0 bits (80), Expect = 0.035
Identities = 17/148 (11%), Positives = 41/148 (27%), Gaps = 26/148 (17%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLA---KENSPAIIFIDEIDAIATKRFDAQTGA-- 69
F +VGSE + + ++ + FR A + ++ E+ + + G
Sbjct: 93 FCPMVGSEVYSTEI-KKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYG 151
Query: 70 -------------DREVQRILLELLNQM---DGFDQTTNVKVIMATNRADTLDPALLRPG 113
Q L + + + + + + +
Sbjct: 152 KTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYAT 211
Query: 114 RLD----RKIEFPLPDRRQKRLVFSTIT 137
D + P D +K+ + +T
Sbjct: 212 EFDLEAEEYVPLPKGDVHKKKEIIQDVT 239
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases
fold, structural genomics, joint cente structural
genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 29.9 bits (67), Expect = 1.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 29 GEGPRMVRDVFRLAKENSPAIIFI 52
GEG R D+F +F+
Sbjct: 46 GEGDRHKFDLFLPEGTPVGLFVFV 69
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 29.9 bits (67), Expect = 1.3
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 25/105 (23%)
Query: 47 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106
+I +DE+D + +G DR L + + T+ +I+ N +
Sbjct: 149 HFVIIMDEVDGM--------SGGDRGGVGQLAQFCRK-------TSTPLILICN--ERNL 191
Query: 107 PALLRPGRLDR---KIEFPLPDRRQKRLVFSTITAK--MNLSDEV 146
P +RP DR I+F PD + TI + L V
Sbjct: 192 PK-MRP--FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV 233
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 2.0
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Query: 291 GADINA--ICQEAGMHAVRENRYIVLPKDFEKGYKKCA--GMHAVRENRYI 337
G ++N C E ++ IV + F +G CA G+ V ++ +
Sbjct: 15 GPNLNIVLTCPECKVY----PPKIV--ERFSEGDVVCALCGL--VLSDKLV 57
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 29.1 bits (66), Expect = 2.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 49 IIFIDEIDAIATK 61
I++ID+ID I+ K
Sbjct: 119 IVYIDQIDKISRK 131
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 29.1 bits (66), Expect = 2.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 49 IIFIDEIDAIATK 61
I+FIDEID I+
Sbjct: 140 IVFIDEIDKISRL 152
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D*
3clt_D* 3clr_D* 3cls_D*
Length = 320
Score = 28.3 bits (64), Expect = 3.6
Identities = 6/62 (9%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 89 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDL 148
++ T R P + ++ P R + + + +++D+
Sbjct: 144 DFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVGG----GNDIDI 199
Query: 149 ED 150
Sbjct: 200 TT 201
>3dnu_A Protein HIPA; persistence, MDT, multidrug resistance, unknown
function; 1.54A {Escherichia coli} PDB: 3dnt_A 3dnv_A*
3dnw_A* 3hzi_A* 2wiu_A 3fbr_A*
Length = 440
Score = 28.5 bits (63), Expect = 3.7
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 48 AIIFIDEIDAIATKRFDAQTGADRE-VQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 106
II + A+A +RFD + A+R + R+ E + Q G + +
Sbjct: 221 EIIKAGNVRALAVERFDRRWNAERTVLLRLPQEDMCQTFG--------LPSSVKYESDGG 272
Query: 107 PALLRPGRLDRKIEFPLPDRRQ--KRLVFSTIT 137
P + R L DR K VF +
Sbjct: 273 PGIARIMAFLMGSSEALKDRYDFMKFQVFQWLI 305
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A
{Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Length = 149
Score = 27.2 bits (61), Expect = 4.5
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 33 RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLEL-LNQMDGFD--- 88
R+V++V + + + II D + A+A + + ILL+L L + DG +
Sbjct: 22 RLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLA 81
Query: 89 ------QTTNVKVIMATNRADTLD 106
+ V++ T + D
Sbjct: 82 EIKQNPDLKRIPVVVLTTSHNEDD 105
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 28.1 bits (63), Expect = 5.1
Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 31/149 (20%)
Query: 223 NLQVIMATNR--ADTLDPALLRPGRLDRKIEFPL-----------PDRRQKRLVFSTITA 269
+ ++ A N D + PAL R + + R+K + F
Sbjct: 252 DFVLVAAGNLDTVDKMHPALR-----SRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEV 306
Query: 270 KMNLSDEVDLEDYVARPDRIS-------------GADINAICQEAGMHAVRENRYIVLPK 316
K + ++ V R + D+ I + AG AV++ + V +
Sbjct: 307 KRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVERE 366
Query: 317 DFEKGYKKCAGMHAVRENRYIVLPKDFEK 345
D + K + + YI K+++
Sbjct: 367 DVIEAVKMAKPLEKQLADWYIERKKEYQV 395
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.396
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,715,462
Number of extensions: 366446
Number of successful extensions: 906
Number of sequences better than 10.0: 1
Number of HSP's gapped: 825
Number of HSP's successfully gapped: 106
Length of query: 362
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,049,298
Effective search space: 1081162566
Effective search space used: 1081162566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)