RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6770
(362 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 195 bits (497), Expect = 2e-61
Identities = 66/177 (37%), Positives = 97/177 (54%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
LL + E F + GS+FV+ ++G G VRD+F AK+ +P IIFIDEIDA+ +
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R G E ++ L ++L +MDGF+ + VI ATNR D LDPALLRPGR DR++
Sbjct: 120 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 179
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
LPD R + + ++ L+ ++D SGAD+ + E + R +
Sbjct: 180 GLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236
Score = 116 bits (293), Expect = 3e-31
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 266
+ + +M+ + VI ATNR D LDPALLRPGR DR++ LPD R + +
Sbjct: 134 TLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 193
Query: 267 ITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
++ L+ ++D SGAD+ + EA + A R N+ +V +FEK K
Sbjct: 194 HMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251
Score = 65.2 bits (159), Expect = 9e-13
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNI 221
VI ATNR D LDPALLRPGR DR++ LPD R + + ++ +I
Sbjct: 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI 204
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 193 bits (492), Expect = 1e-60
Identities = 68/177 (38%), Positives = 97/177 (54%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
L + E FI GS+FV+ ++G G VRD+F AK ++P I+FIDEIDA+ K
Sbjct: 57 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 116
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R G + E ++ L +LL +MDGF++ T + V+ ATNR D LDPALLRPGR DR+I
Sbjct: 117 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 176
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
PD + + + L+++VDL R GAD+ + E + R
Sbjct: 177 DAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 233
Score = 115 bits (289), Expect = 9e-31
Identities = 39/116 (33%), Positives = 57/116 (49%)
Query: 205 RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 264
+ + +M+ + V+ ATNR D LDPALLRPGR DR+I PD + + +
Sbjct: 129 EQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL 188
Query: 265 STITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
L+++VDL R GAD+ + EA + A RE R + KD E+
Sbjct: 189 RIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 244
Score = 65.6 bits (160), Expect = 6e-13
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNI 221
V+ ATNR D LDPALLRPGR DR+I PD + + + ++
Sbjct: 150 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV 201
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 138 bits (349), Expect = 2e-39
Identities = 58/158 (36%), Positives = 87/158 (55%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
FI + G E + + GE VR++F A++ +P ++F DE+D+IA R
Sbjct: 69 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 128
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 134
R++ ++L +MDG NV +I ATNR D +DPA+LRPGRLD+ I PLPD + + +
Sbjct: 129 RVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 188
Query: 135 TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIM 172
K ++ +VDLE + SGAD+ ICQ
Sbjct: 189 ANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACK 226
Score = 88.0 bits (217), Expect = 1e-20
Identities = 43/118 (36%), Positives = 65/118 (55%)
Query: 207 VFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 266
V + I +M+ M N+ +I ATNR D +DPA+LRPGRLD+ I PLPD + + +
Sbjct: 130 VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 189
Query: 267 ITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
K ++ +VDLE + SGAD+ ICQ A A+RE+ + ++ E+
Sbjct: 190 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNP 247
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 110 bits (277), Expect = 2e-28
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 7/132 (5%)
Query: 15 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 74
+ V E + Y + V D+ R +I ID + + T
Sbjct: 153 YATVRFGEPLSGYNTDFNVFVDDIARAML--QHRVIVIDSLKNVIGAAGGNTTSGGIS-- 208
Query: 75 RILLELLNQMDGFDQTTNVKVIMATNRA---DTLDPALLRPGRLDRKIEFPLPDRRQKRL 131
R +LL+ + + VI + N D + + R + D +
Sbjct: 209 RGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQ 268
Query: 132 VFSTITAKMNLS 143
V + +
Sbjct: 269 VLTRTGEGLQRL 280
Score = 55.8 bits (134), Expect = 2e-09
Identities = 10/117 (8%), Positives = 26/117 (22%), Gaps = 19/117 (16%)
Query: 207 VFSTITAKMNFMLNIGNLQVIMATNRA---DTLDPALLRPGRLDRKIEFPLPDRRQKRLV 263
+ + + M VI + N D + + R + D + V
Sbjct: 210 GAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQV 269
Query: 264 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
+ + + E + + ++ + K
Sbjct: 270 LTRTGEGLQR----------------LTHTLQTSYGEHSVLTIHTSKQSGGKQASGK 310
Score = 45.4 bits (107), Expect = 5e-06
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 170 VIMATNRA---DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 215
VI + N D + + R + D + V + +
Sbjct: 229 VIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGL 277
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 93.9 bits (232), Expect = 1e-22
Identities = 67/175 (38%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATK 61
L+ + E F + G E + K GE +R F A++N+PAIIFIDE+DAIA K
Sbjct: 53 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 112
Query: 62 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 121
R +R RI+ +LL MDG Q +V V+ ATNR +++DPAL R GR DR+++
Sbjct: 113 REKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 169
Query: 122 PLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNR 176
+PD + + T M L+D+VDLE GAD+ A+C E + R
Sbjct: 170 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 224
Score = 74.7 bits (182), Expect = 6e-16
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Query: 205 RLVFSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 264
R + S + M+ + ++ V+ ATNR +++DPAL R GR DR+++ +PD + +
Sbjct: 122 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 181
Query: 265 STITAKMNLSDEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
T M L+D+VDLE GAD+ A+C EA + A+R+ ++ +D
Sbjct: 182 QIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET----- 236
Query: 325 CAGMHAVRENRYIVLPKDFEK 345
+ A N V DF
Sbjct: 237 ---IDAEVMNSLAVTMDDFRW 254
Score = 36.5 bits (83), Expect = 0.003
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 170 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNFMLNIGNLQVIMA 229
V+ ATNR +++DPAL R GR DR+++ +PD + + T M ++ QV
Sbjct: 143 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 202
Query: 230 T 230
T
Sbjct: 203 T 203
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 71.2 bits (174), Expect = 2e-14
Identities = 22/183 (12%), Positives = 45/183 (24%), Gaps = 23/183 (12%)
Query: 2 LLCTSFDTELVTAFIRVVGSEFVQKY-LGEGPRMVRDVFRLAK------ENSPAIIFIDE 54
L + + V + LG VF K + P+ I+
Sbjct: 169 TLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN 228
Query: 55 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGR 114
+D + + + + I+ N R
Sbjct: 229 LDNLRDYLDGSVKVNLEKKHLNKRTQIFPP----------GIVTMNE---YSVPKTLQAR 275
Query: 115 LDRKIEFPLPDRRQKRLVFS-TITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMA 173
++I+F D + L S + K + + + + A+ Q I+
Sbjct: 276 FVKQIDFRPKDYLKHCLERSEFLLEKRII--QSGIALLLMLIWYRPVAEFAQSIQSRIVE 333
Query: 174 TNR 176
Sbjct: 334 WKE 336
Score = 44.7 bits (105), Expect = 8e-06
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 6/96 (6%)
Query: 226 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS-TITAKMNLSDEVDLEDYVA 284
I+ N R ++I+F D + L S + K + + + +
Sbjct: 259 GIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII--QSGIALLLM 313
Query: 285 RPDRISGADINAICQEAGMHAVRENRYIVLPKDFEK 320
A+ Q + ++K
Sbjct: 314 LIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQK 349
Score = 33.5 bits (76), Expect = 0.033
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 156 DRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 206
++ I I+ N R ++I+F D + L
Sbjct: 245 EKKHLNKRTQIFPPGIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHCL 292
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 62.7 bits (151), Expect = 9e-12
Identities = 23/217 (10%), Positives = 54/217 (24%), Gaps = 15/217 (6%)
Query: 10 ELVTAFIRVVGSEFVQ---KYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQ 66
E I + F Q + +DV + S +
Sbjct: 55 ETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVI 114
Query: 67 TGADREVQRILLEL--------LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK 118
G R + +M + R +T+ R K
Sbjct: 115 EGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPK 174
Query: 119 IEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRAD 178
+ + + + + + + S + +I + +
Sbjct: 175 QAHDIVVKNLPTNLETLHKTGLFSDIRLYNRE---GVKLYSSLETPSISPKETLEKELNR 231
Query: 179 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKM 215
+ ++P L+R + + ++ Q+ F I K+
Sbjct: 232 KVSGKEIQPT-LERIEQKMVLNKHQETPEFKAIQQKL 267
Score = 46.9 bits (110), Expect = 1e-06
Identities = 9/110 (8%), Positives = 28/110 (25%), Gaps = 5/110 (4%)
Query: 215 MNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLS 274
M M + R +T+ R K + + + + +
Sbjct: 140 MYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSD 199
Query: 275 DEVDLEDYVARPDRISGADINAICQEAGMHAVRENRYIVLPKDFEKGYKK 324
+ + S + +I + + + K+ + ++
Sbjct: 200 IRLYNRE---GVKLYSSLETPSISPKETLEKELNRKV--SGKEIQPTLER 244
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 57.3 bits (137), Expect = 4e-10
Identities = 23/179 (12%), Positives = 59/179 (32%), Gaps = 17/179 (9%)
Query: 20 GSEFVQKYLGEGPRM-VRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILL 78
+ + + ++ +F A ++ + + +D+I+ + R +L
Sbjct: 73 SPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQ 128
Query: 79 ELLNQMDGFDQTTNVKV-IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 137
LL + + I T+R D L + I P ++ L +
Sbjct: 129 ALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLL--EALE 185
Query: 138 AKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDRKIEF 196
N D ++ ++ G + ++++M + +DP R+ + +
Sbjct: 186 LLGNFKD----KERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPE----YRVRKFLAL 236
Score = 47.2 bits (111), Expect = 9e-07
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 1/84 (1%)
Query: 227 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVARP 286
I T+R D L + I P ++ L + + + V
Sbjct: 147 IGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK 205
Query: 287 DRISGADINAICQEAGMHAVRENR 310
G + E + E R
Sbjct: 206 KVWIGIKKLLMLIEMSLQMDPEYR 229
Score = 39.9 bits (92), Expect = 2e-04
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 1/74 (1%)
Query: 133 FSTITAKMNLSDEVDLEDYVARPDRISGADINAICQEVIMATNRADTLDPALLRPGRLDR 192
+ + + A + A +I T+R D L +
Sbjct: 109 IERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFST 167
Query: 193 KIEFPLPDRRQKRL 206
I P ++ L
Sbjct: 168 TIHVPNIATGEQLL 181
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 43.3 bits (101), Expect = 2e-05
Identities = 34/175 (19%), Positives = 58/175 (33%), Gaps = 15/175 (8%)
Query: 45 NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD--------QTTNVKVI 96
I+FIDEID I K + GAD + + +LL ++G +T ++ I
Sbjct: 114 EQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 171
Query: 97 M--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 154
A A D GRL ++E + + A + + +
Sbjct: 172 ASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVN 231
Query: 155 PDRISGADINAICQEVIMATNRADTLDPALLRP--GRLDRKIEFPLPDRRQKRLV 207
+ A I + + + + L RL KI F D + +
Sbjct: 232 IAFTTDAV-KKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVN 285
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 39.0 bits (89), Expect = 5e-04
Identities = 14/123 (11%), Positives = 29/123 (23%), Gaps = 13/123 (10%)
Query: 215 MNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEFPLP-----DRRQKRLVFSTITA 269
L + +++ + L+ + K L +
Sbjct: 150 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL 209
Query: 270 KMNLSDEVDLEDYVARPDRISGADI--------NAICQEAGMHAVRENRYIVLPKDFEKG 321
E L+ + D I + A + R + P+D K
Sbjct: 210 AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKS 269
Query: 322 YKK 324
K+
Sbjct: 270 SKE 272
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 35.5 bits (80), Expect = 0.007
Identities = 10/129 (7%), Positives = 32/129 (24%), Gaps = 12/129 (9%)
Query: 208 FSTITAKMNFMLNIGNLQVIMATNRADTLDPALLRPGRLDRKIEF----PLPDRRQKRLV 263
+ ++ + + ++ + L + +++ +I F P R+ +
Sbjct: 158 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTI 217
Query: 264 FSTITAKMNLSDEVDLE--DYVAR------PDRISGADINAICQEAGMHAVRENRYIVLP 315
+ + ++ S + A A R +
Sbjct: 218 LEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSE 277
Query: 316 KDFEKGYKK 324
K +
Sbjct: 278 DLVRKAVSE 286
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 31.2 bits (69), Expect = 0.21
Identities = 7/71 (9%), Positives = 24/71 (33%), Gaps = 14/71 (19%)
Query: 38 VFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM 97
+F + +DE+DA D + + + + + +++ I+
Sbjct: 346 LFAINSYQPSPFFVLDEVDA----------ALDITNVQRIAAYIRRH----RNPDLQFIV 391
Query: 98 ATNRADTLDPA 108
+ + + +
Sbjct: 392 ISLKNTMFEKS 402
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 28.6 bits (63), Expect = 1.2
Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 23/151 (15%)
Query: 35 VRDVFRLAKENSPA----IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQT 90
RD+ + + IDE+ + R LL+ L +
Sbjct: 100 TRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLKTLE-----EPP 143
Query: 91 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITAKMNLSDEVDLED 150
+VK ++AT L +L + D Q R I + +++ E
Sbjct: 144 EHVKFLLATTDPQKLPVTILSR---CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 200
Query: 151 YVARPDRISGADINAICQEVIMATNRADTLD 181
+AR S D ++ + I + + +
Sbjct: 201 LLARAAEGSLRDALSLTDQAIASGDGQVSTQ 231
>d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1,
Nqo1 {Thermus thermophilus [TaxId: 274]}
Length = 243
Score = 27.3 bits (60), Expect = 3.0
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 124 PDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 154
D R +R +++ + L+ Y+
Sbjct: 3 LDPRFERTLYAHV----GKEGSWTLDYYLRH 29
Score = 27.3 bits (60), Expect = 3.0
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 255 PDRRQKRLVFSTITAKMNLSDEVDLEDYVAR 285
D R +R +++ + L+ Y+
Sbjct: 3 LDPRFERTLYAHV----GKEGSWTLDYYLRH 29
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 27.1 bits (59), Expect = 3.7
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 9 TELVTAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDE-IDAIATKRFDAQT 67
+++ + V +++ +L K + +IF +E I IA + +T
Sbjct: 260 LPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT 319
Query: 68 GA---DREVQRILLELL 81
GA ++ L+++
Sbjct: 320 GARGLRAIIEDFCLDIM 336
>d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492
{Silicibacter sp. tm1040 [TaxId: 292414]}
Length = 261
Score = 26.9 bits (58), Expect = 3.8
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 29 GEGPRMVRDVFRLAKENSPAIIFI 52
GEG R D+F +F+
Sbjct: 45 GEGDRHKFDLFLPEGTPVGLFVFV 68
>d1v7mv_ a.26.1.2 (V:) Thrombopoietin {Human (Homo sapiens) [TaxId:
9606]}
Length = 145
Score = 25.5 bits (56), Expect = 6.1
Identities = 4/32 (12%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 309 NRYIVLPKDFEKGYKKCAGMHAVRENRYIVLP 340
++ + +C +H + ++LP
Sbjct: 7 SKLLRDSHVLHSRLSQCPEVHPLPTP--VLLP 36
>d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow
(Bos taurus), brain [TaxId: 9913]}
Length = 400
Score = 25.7 bits (55), Expect = 8.9
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 56 DAIATKRF--DAQTGADREVQRILLELLNQ 83
+ K+F D +T AD VQ ++ E +
Sbjct: 38 EGEKNKKFAVDFKTLADVLVQEVIKENMEN 67
>d1ei7a_ a.24.5.1 (A:) Tobacco mosaic virus coat protein {Tobacco
mosaic virus, vulgare strain [TaxId: 12242]}
Length = 158
Score = 25.2 bits (55), Expect = 9.3
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 59 ATKRFDAQTGADR-EVQRILLELLNQMDGFDQTT 91
AT+R D T A R + +++EL+ +++++
Sbjct: 110 ATRRVDDATVAIRSAINNLIVELIRGTGSYNRSS 143
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.396
Gapped
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,347,355
Number of extensions: 65328
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 41
Length of query: 362
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,226,816
Effective search space: 338601216
Effective search space used: 338601216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)