Query psy6771
Match_columns 493
No_of_seqs 177 out of 259
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 17:59:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2357|consensus 100.0 6.8E-86 1.5E-90 671.9 27.6 330 128-491 88-440 (440)
2 PF07946 DUF1682: Protein of u 100.0 1.9E-74 4E-79 590.5 32.9 300 143-480 1-321 (321)
3 KOG2357|consensus 99.9 4.7E-21 1E-25 197.1 18.2 130 120-260 87-219 (440)
4 PF07946 DUF1682: Protein of u 99.1 5.7E-10 1.2E-14 115.1 14.4 78 139-225 1-81 (321)
5 PRK10455 periplasmic protein; 88.2 3.9 8.5E-05 38.6 9.6 34 454-487 123-156 (161)
6 PTZ00266 NIMA-related protein 87.0 1.3 2.8E-05 52.8 6.8 7 261-267 222-228 (1021)
7 KOG0163|consensus 83.8 6.4 0.00014 45.3 9.8 21 244-264 659-679 (1259)
8 KOG4364|consensus 83.5 2.9 6.3E-05 47.2 7.0 12 414-425 257-268 (811)
9 KOG1144|consensus 73.4 6 0.00013 45.7 5.7 15 442-456 261-275 (1064)
10 PF11208 DUF2992: Protein of u 70.9 21 0.00046 32.8 7.7 13 394-406 37-49 (132)
11 PF04696 Pinin_SDK_memA: pinin 66.9 24 0.00052 32.1 7.3 72 402-475 16-87 (131)
12 KOG1029|consensus 64.5 26 0.00057 40.7 8.3 20 464-483 406-426 (1118)
13 PLN03086 PRLI-interacting fact 57.2 38 0.00083 38.2 8.0 17 440-456 35-51 (567)
14 KOG2002|consensus 57.0 72 0.0016 38.1 10.3 11 171-181 546-556 (1018)
15 KOG2412|consensus 56.1 67 0.0014 36.0 9.4 11 394-404 186-196 (591)
16 KOG2891|consensus 53.6 51 0.0011 34.1 7.5 44 240-283 102-155 (445)
17 KOG4055|consensus 53.6 73 0.0016 31.0 8.1 41 440-485 110-150 (213)
18 PF03879 Cgr1: Cgr1 family; I 53.3 75 0.0016 28.3 7.7 20 417-436 43-62 (108)
19 PF06658 DUF1168: Protein of u 51.3 84 0.0018 29.3 8.0 19 439-457 65-83 (142)
20 PRK00247 putative inner membra 51.2 34 0.00075 37.3 6.3 26 146-171 32-58 (429)
21 COG3678 CpxP P pilus assembly/ 50.8 1.5E+02 0.0033 28.1 9.8 38 449-486 119-156 (160)
22 PF11460 DUF3007: Protein of u 49.5 30 0.00064 30.6 4.5 14 458-471 87-100 (104)
23 PRK12750 cpxP periplasmic repr 49.2 1.3E+02 0.0028 28.7 9.2 26 454-479 130-155 (170)
24 TIGR00570 cdk7 CDK-activating 47.5 1.2E+02 0.0027 31.7 9.4 15 392-406 99-113 (309)
25 KOG1991|consensus 46.6 21 0.00045 42.4 3.9 17 39-55 891-907 (1010)
26 KOG3054|consensus 46.4 61 0.0013 32.9 6.7 14 152-165 10-23 (299)
27 PLN03086 PRLI-interacting fact 45.8 24 0.00052 39.8 4.2 6 465-470 49-54 (567)
28 KOG3756|consensus 45.4 1.4E+02 0.0031 31.3 9.3 52 394-448 143-194 (340)
29 PRK00247 putative inner membra 43.3 41 0.00089 36.7 5.4 8 249-256 105-112 (429)
30 KOG0163|consensus 40.1 1.2E+02 0.0025 35.7 8.3 11 448-458 952-962 (1259)
31 PF10446 DUF2457: Protein of u 38.3 23 0.0005 38.6 2.5 14 420-433 396-409 (458)
32 PTZ00399 cysteinyl-tRNA-synthe 38.2 41 0.00089 38.6 4.7 33 393-425 483-526 (651)
33 PRK06568 F0F1 ATP synthase sub 37.6 2.2E+02 0.0049 26.7 8.7 47 394-443 10-56 (154)
34 COG3122 Uncharacterized protei 37.6 97 0.0021 30.1 6.3 31 447-480 85-115 (215)
35 TIGR00570 cdk7 CDK-activating 37.4 1.4E+02 0.0031 31.2 8.1 12 330-341 77-88 (309)
36 PF06098 Radial_spoke_3: Radia 36.6 53 0.0011 34.1 4.7 10 391-400 129-138 (291)
37 KOG2412|consensus 36.1 1.2E+02 0.0026 34.1 7.5 16 418-433 203-218 (591)
38 PF04931 DNA_pol_phi: DNA poly 35.0 42 0.0009 39.2 4.2 7 14-20 602-608 (784)
39 PF06936 Selenoprotein_S: Sele 34.2 99 0.0021 30.1 6.0 9 437-445 80-88 (190)
40 KOG2002|consensus 30.7 1.5E+02 0.0033 35.6 7.6 6 259-264 658-663 (1018)
41 PF10147 CR6_interact: Growth 30.3 1.6E+02 0.0036 29.3 6.8 31 400-430 99-129 (217)
42 PRK02898 cobalt transport prot 30.0 23 0.00049 31.2 0.7 28 145-172 70-97 (100)
43 PTZ00399 cysteinyl-tRNA-synthe 29.7 2.3E+02 0.0049 32.7 8.8 9 399-407 516-524 (651)
44 KOG0388|consensus 29.6 1.4E+02 0.003 35.0 6.9 29 447-480 425-453 (1185)
45 PF04644 Motilin_ghrelin: Moti 29.6 39 0.00085 23.0 1.6 18 462-480 6-23 (28)
46 COG3105 Uncharacterized protei 29.4 82 0.0018 29.0 4.1 34 232-270 71-104 (138)
47 PF03896 TRAP_alpha: Transloco 28.2 59 0.0013 33.6 3.5 17 270-286 142-158 (285)
48 COG3105 Uncharacterized protei 27.8 1.5E+02 0.0033 27.4 5.5 25 146-170 10-35 (138)
49 PRK12751 cpxP periplasmic stre 27.7 2.6E+02 0.0056 26.6 7.4 26 455-480 124-149 (162)
50 PF07813 LTXXQ: LTXXQ motif fa 27.5 1.8E+02 0.004 23.8 5.9 19 454-472 81-99 (100)
51 KOG3248|consensus 27.4 1.4E+02 0.003 31.8 6.0 15 460-474 232-246 (421)
52 KOG4691|consensus 27.0 4.3E+02 0.0094 26.1 8.8 36 370-410 44-79 (227)
53 COG0711 AtpF F0F1-type ATP syn 26.1 5.4E+02 0.012 24.0 10.0 27 416-442 31-57 (161)
54 PRK11677 hypothetical protein; 26.0 75 0.0016 29.3 3.4 20 146-165 5-24 (134)
55 COG4499 Predicted membrane pro 25.2 2.4E+02 0.0053 30.6 7.3 39 402-440 352-391 (434)
56 PF06459 RR_TM4-6: Ryanodine R 25.0 64 0.0014 33.2 3.0 24 142-165 169-192 (274)
57 PF10669 Phage_Gp23: Protein g 24.7 4.6E+02 0.01 23.1 7.7 25 444-470 60-84 (121)
58 KOG2505|consensus 24.3 1.4E+02 0.003 33.4 5.5 45 433-481 501-545 (591)
59 KOG2072|consensus 23.9 2.3E+02 0.0049 33.6 7.3 15 138-152 151-165 (988)
60 cd00520 RRF Ribosome recycling 23.7 3.3E+02 0.0072 26.0 7.5 47 426-472 109-155 (179)
61 PRK01005 V-type ATP synthase s 22.9 4.2E+02 0.0092 26.0 8.2 6 402-407 13-18 (207)
62 PF09831 DUF2058: Uncharacteri 22.8 3.3E+02 0.0071 26.3 7.2 28 449-479 51-78 (177)
63 PRK00083 frr ribosome recyclin 21.7 4.4E+02 0.0096 25.4 8.0 49 424-472 111-159 (185)
64 PF03147 FDX-ACB: Ferredoxin-f 21.5 2.8E+02 0.006 23.3 5.9 62 329-401 21-83 (94)
65 PF10731 Anophelin: Thrombin i 21.4 1.4E+02 0.003 24.0 3.6 13 19-31 5-17 (65)
66 KOG4661|consensus 21.3 2.1E+02 0.0046 32.5 6.2 14 313-326 451-464 (940)
67 PRK00478 scpA segregation and 21.1 3.9E+02 0.0084 29.9 8.3 52 417-470 430-488 (505)
68 PRK10328 DNA binding protein, 21.0 3.6E+02 0.0078 24.8 6.8 8 459-466 68-75 (134)
69 PRK12585 putative monovalent c 20.6 3.3E+02 0.0071 26.8 6.7 26 408-433 120-145 (197)
70 KOG3272|consensus 20.6 2.5E+02 0.0053 27.6 5.8 25 457-481 162-186 (207)
71 PTZ00491 major vault protein; 20.4 1.9E+02 0.0041 34.3 5.9 35 436-470 667-701 (850)
72 PF12072 DUF3552: Domain of un 20.3 1.9E+02 0.0041 28.0 5.2 17 459-475 144-160 (201)
73 PF01765 RRF: Ribosome recycli 20.2 5.4E+02 0.012 24.1 8.1 42 429-470 98-139 (165)
74 KOG0241|consensus 20.0 5E+02 0.011 31.7 9.0 36 365-409 316-351 (1714)
75 PRK01558 V-type ATP synthase s 20.0 3.4E+02 0.0075 26.2 6.9 26 402-428 8-33 (198)
No 1
>KOG2357|consensus
Probab=100.00 E-value=6.8e-86 Score=671.92 Aligned_cols=330 Identities=48% Similarity=0.809 Sum_probs=308.9
Q ss_pred CCccccccCcccccc-hhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhhhcCcceeccCCCccccchhhh
Q psy6771 128 PTITIQDIPMHLRSN-WDSYYLELLMIAGLVAYIINFITGRNKNFKLATHWINTHRALLEDNFSLVGDDGKQEIENSSLI 206 (493)
Q Consensus 128 ~pl~~~~~p~~~rs~-~~e~~~E~~~l~~l~~y~i~~~~G~~~N~~~A~~wl~~~~~ll~~~Fa~vG~~g~~~~~~~~l~ 206 (493)
+|+++.++|.|+++. |.+|++|++++++|++|+++|++|++.|.++|.+|+..|.++|..||++||++|. +
T Consensus 88 ~p~~~~e~pa~~q~~kw~sy~~E~~~v~~Ll~y~~nY~~GK~kN~klA~~wF~s~~s~le~nFa~vG~~~~-~------- 159 (440)
T KOG2357|consen 88 PPLTESEVPAHFQTVKWYSYTVEIVMVAILLLYAANYFTGKRKNAKLAQAWFGSLRSLLEENFALVGDDGN-E------- 159 (440)
T ss_pred CCcccccCchhhhccchhhhHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhheeCCCCC-C-------
Confidence 345555566566666 8888999999999999999999999999999999999999999999999999883 1
Q ss_pred hhccccccccccCCCCCcccccccceeeeccceeeEEecCCCccceEEEEEEecCcCcHHHHHHhhcCCCCCeEEEEEEe
Q psy6771 207 KESENTFTLWCSGRDDGKQEIENSSLIKESENTFTLWCSGRSCCEGMLVELKLIKRQDLVGLIAQLIRPSTDQLSMSFDL 286 (493)
Q Consensus 207 ~e~e~~~~~wcsgr~~~~~~~~~~~likEs~~~F~~yATGR~nc~~l~v~l~L~kRqdl~s~~~~~~~p~~D~v~i~v~l 286 (493)
+...|+++++++|++|||||+||.||+++|+|++||||+|+++++|+|..|+|+++++|
T Consensus 160 ---------------------ssp~li~es~t~Fs~~~tGR~~c~gll~~L~l~~RqDl~S~v~~~v~P~~D~vt~ev~l 218 (440)
T KOG2357|consen 160 ---------------------SSPLLIKESETVFSSYATGRVNCKGLLLTLKLVKRQDLLSRVMNSVRPVGDQVTFEVTL 218 (440)
T ss_pred ---------------------CCchhhcccchhHHHHhcchhHHhhhhhhhhhhhhccHHHHHHHhcccccceEEEEEec
Confidence 34469999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCcccc--------------------ccccccc-cCCCCCCCCCceEEEechhhhHhhhccHHHHHHHHhcccCccE
Q psy6771 287 GK-EDMDSF--------------------SLYCPER-KSGDKFNLPSGFNVMSEIAEVSSSLIDSKFLTIVNKFSDLIDY 344 (493)
Q Consensus 287 ~~-~~~D~F--------------------~~f~~~~-~~~d~~~LP~~~~vmSEs~Eit~~ilt~~li~~l~~~~~~le~ 344 (493)
++ +.||.| |+||+.. .++.+|+||++|+||||++|++.+|+++.++.+|++|+++|+|
T Consensus 219 ~d~~~md~~VFAv~tkk~~k~l~ke~~DLs~F~si~~~p~~~~~lP~~~~vmSE~nEvs~~i~~~~v~~~l~k~~~~iey 298 (440)
T KOG2357|consen 219 NDKEDMDHFVFAVGTKKAAKKLFKEMRDLSRFASIVSSPEGRYNLPESFVVMSESNEVSGAIFEDKVVSQLNKYGDNIEY 298 (440)
T ss_pred CcccccceeEEeeehHHHHHHHHHHHHHHHHHhccCCCcccccCCCcceeeeecchhhhhhhhchHHHHHHHHHHhhhhe
Confidence 98 789997 9999998 4567889999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcccccccCCCCCceEEEEEEEecCCCCCccchHHhHHHHHHHHHHHHHhhcccccCHHHHHHHHHhhH
Q psy6771 345 IHISDQFSGPKQTEETTLTKLPDVKKVILFNFNLQMGQLSIQDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRH 424 (493)
Q Consensus 345 i~iTDQps~p~~~~e~~~~~~p~~~k~l~l~~~lP~~~~~~~d~~~~~~~Ll~lv~~liD~l~~~~ls~e~k~Ka~K~R~ 424 (493)
|||||||+|| +.+++..+++|++++++.+.||+|..+. +| +.+.+|+.|++|+||++++++||.++++|+.++|+
T Consensus 299 ih~SDQ~sgP-~~~~E~~t~~P~~~~~~l~~fnlp~~~k---~m-e~iv~i~~li~ylid~~~~~~lS~~~k~kt~~~RQ 373 (440)
T KOG2357|consen 299 IHFSDQFSGP-IDQEEGETKLPEAKRMLLFKFNLPLLNK---DM-EDIVEILNLIFYLIDKAKKLFLSKDAKAKTDKNRQ 373 (440)
T ss_pred EEeecCCCCC-cccccccccCchhhhhheeccCccchHH---HH-HHHHHHHHHHHHHHHHHHhhhchHHHHhhhhhhHH
Confidence 9999999999 7777755899999999999999995542 88 99999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHhhHHHHHHHHHhhhcCCCccccccc
Q psy6771 425 RVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMKQLKVK 491 (493)
Q Consensus 425 ~~~~~~~K~~~~~r~E~a~~kkeEkkk~erer~l~~lspeeQrK~eEKE~kke~KK~~~K~Kq~kvk 491 (493)
+++++++|.+|+.|||++|++|+|++|++++++++.+|||+|||+|.||++|++|+++|||||++||
T Consensus 374 ~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~kekl~a~~d~Ek~rr~EakerkR~~K~~~pKMkR~~vk 440 (440)
T KOG2357|consen 374 RVEEEFLKLTHAARQEAAQEKKAEKKKAEKEKLKASGDPEKQRRKEAKERKRQAKKKQPKMKRLAVK 440 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcChhhhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=100.00 E-value=1.9e-74 Score=590.52 Aligned_cols=300 Identities=42% Similarity=0.738 Sum_probs=282.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhhhcCcceeccCCCccccchhhhhhccccccccccCCCC
Q psy6771 143 WDSYYLELLMIAGLVAYIINFITGRNKNFKLATHWINTHRALLEDNFSLVGDDGKQEIENSSLIKESENTFTLWCSGRDD 222 (493)
Q Consensus 143 ~~e~~~E~~~l~~l~~y~i~~~~G~~~N~~~A~~wl~~~~~ll~~~Fa~vG~~g~~~~~~~~l~~e~e~~~~~wcsgr~~ 222 (493)
|.+|++|++++++|++|+++|++|+.+|+++|.+|+.+|.++|.+||+.||+++..
T Consensus 1 ~~~~~~E~~~l~~l~~y~~~y~~G~~~N~~~A~~w~~~~~~~L~~~Fa~VG~~~~~------------------------ 56 (321)
T PF07946_consen 1 WYNFYLEIIFLAFLLLYVVNYFIGKSKNRRIAKAWFESHQPLLESNFALVGDDGSE------------------------ 56 (321)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc------------------------
Confidence 67899999999999999999999999999999999999999999999999998731
Q ss_pred CcccccccceeeeccceeeEEecCCCccceEEEEEEecCcCcHHHHHHhhcCCC----CCeEEEEEEeCCCCcccc----
Q psy6771 223 GKQEIENSSLIKESENTFTLWCSGRSCCEGMLVELKLIKRQDLVGLIAQLIRPS----TDQLSMSFDLGKEDMDSF---- 294 (493)
Q Consensus 223 ~~~~~~~~~likEs~~~F~~yATGR~nc~~l~v~l~L~kRqdl~s~~~~~~~p~----~D~v~i~v~l~~~~~D~F---- 294 (493)
....|+++|+++|++|||||+||+||+|+|+|+||||||+++++++.|. .|+|+|+|.++++.||+|
T Consensus 57 -----~~~~l~~~s~~~f~~yaTGR~~~~~~~v~l~L~~Rqdl~~~l~~~i~~~~~~~~D~v~i~i~~~~~~~d~fV~Ai 131 (321)
T PF07946_consen 57 -----KEPLLIKDSPNEFTFYATGRRNCEGLLVTLKLKKRQDLFSWLFEFILPFFFPSKDRVTIEIKMNDENMDPFVFAI 131 (321)
T ss_pred -----ccHHHhhcCcceEEEEEeCCCCeEEEEEEEEECCCcCHHHHHHHHHHhhccCCCCeEEEEEecCccccCceEEEE
Confidence 1237899999999999999999999999999999999999999988887 999999999999999999
Q ss_pred ------------cccccc-ccCCCCCCCCCceEEEechhhhHhhhccHHHHHHHHhcccCccEEEEecCCCCCCCccccc
Q psy6771 295 ------------SLYCPE-RKSGDKFNLPSGFNVMSEIAEVSSSLIDSKFLTIVNKFSDLIDYIHISDQFSGPKQTEETT 361 (493)
Q Consensus 295 ------------~~f~~~-~~~~d~~~LP~~~~vmSEs~Eit~~ilt~~li~~l~~~~~~le~i~iTDQps~p~~~~e~~ 361 (493)
+++++. ++++++.+||+||+|||||+|+++.||++.++++|++++++|+||||||||+++|.+.+++
T Consensus 132 v~K~~~~~~r~~~~dLs~~t~~~~~~~Lp~~~~vmsEs~e~~~~il~~~~~~~l~~~~~~l~~i~~TDq~~~~p~~~~~~ 211 (321)
T PF07946_consen 132 VNKKEMKKLRKDNYDLSLFTKTSESPKLPESLVVMSESNEVTDFILTPELIKALNKAGDYLEYIHFTDQPSGKPPTEEEA 211 (321)
T ss_pred EcHHHHHHHHHhCcchhhccccccccCCCcceEEEEccHhHHHHHhChHHHHHHHhhhhheeEEEEECCCCCCCCCcccC
Confidence 788888 8999999999999999999999999999999999999999999999999999986655431
Q ss_pred ccCCCCCceEEEEEEEecCCCCCccchHHhHHHHHHHHHHHHHhhcccccCHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q psy6771 362 LTKLPDVKKVILFNFNLQMGQLSIQDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEA 441 (493)
Q Consensus 362 ~~~~p~~~k~l~l~~~lP~~~~~~~d~~~~~~~Ll~lv~~liD~l~~~~ls~e~k~Ka~K~R~~~~~~~~K~~~~~r~E~ 441 (493)
.++++|+|+|+||+++. ++ +.+.+||++|++|+|.+++++|++++++|+.|+|+++++++.|++|++|+|+
T Consensus 212 -----~~~~~l~~~~~lp~~~~---~~-~~~~~l~~~v~~l~D~~~~~~l~~e~~~K~~k~R~~~~~~~~K~~~~~r~E~ 282 (321)
T PF07946_consen 212 -----TPKKRLIFSFRLPSSSD---DM-EALEPLLKLVFYLIDKLARFKLSPEAKKKAKKNREEEEEKILKEAHQERQEE 282 (321)
T ss_pred -----CcCcEEEEEEEeCCCcc---cH-HHHHHHHHHHHHHHHHhheeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 27899999999999884 58 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHhhHHHHHHHHHhhh
Q psy6771 442 AALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKK 480 (493)
Q Consensus 442 a~~kkeEkkk~erer~l~~lspeeQrK~eEKE~kke~KK 480 (493)
+|++|+|++|++|++++++|||++||||||||+||++||
T Consensus 283 ~~~~k~e~kr~e~~~~~~~lspeeQrK~eeKe~kk~~rk 321 (321)
T PF07946_consen 283 AQEKKEEKKREERERKLSKLSPEEQRKYEEKERKKEQRK 321 (321)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999899999999999999999999986
No 3
>KOG2357|consensus
Probab=99.87 E-value=4.7e-21 Score=197.12 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=99.2
Q ss_pred CCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHH--HHHHhhhhhhcCcceeccCC
Q psy6771 120 DPTSKQEAPTITIQDIPMHLRSNWDSYYLELLMIAGLVAYIINFIT-GRNKNFKLATH--WINTHRALLEDNFSLVGDDG 196 (493)
Q Consensus 120 ~~~~~~~~~pl~~~~~p~~~rs~~~e~~~E~~~l~~l~~y~i~~~~-G~~~N~~~A~~--wl~~~~~ll~~~Fa~vG~~g 196 (493)
.|++++.++|+|+++ +.|++||+++.+.+++++|++||++|... .+++|+|+..+ +|+.+|++||+++. ...+
T Consensus 87 ~~p~~~~e~pa~~q~--~kw~sy~~E~~~v~~Ll~y~~nY~~GK~kN~klA~~wF~s~~s~le~nFa~vG~~~~--~ssp 162 (440)
T KOG2357|consen 87 TPPLTESEVPAHFQT--VKWYSYTVEIVMVAILLLYAANYFTGKRKNAKLAQAWFGSLRSLLEENFALVGDDGN--ESSP 162 (440)
T ss_pred CCCcccccCchhhhc--cchhhhHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhheeCCCCC--CCCc
Confidence 455999999999987 23999999999999999999999999999 99999999999 99999999999996 2223
Q ss_pred CccccchhhhhhccccccccccCCCCCcccccccceeeeccceeeEEecCCCccceEEEEEEec
Q psy6771 197 KQEIENSSLIKESENTFTLWCSGRDDGKQEIENSSLIKESENTFTLWCSGRSCCEGMLVELKLI 260 (493)
Q Consensus 197 ~~~~~~~~l~~e~e~~~~~wcsgr~~~~~~~~~~~likEs~~~F~~yATGR~nc~~l~v~l~L~ 260 (493)
. |++++++.|++|||||+||..+.-.-.|++-+.=.=.+.-+=|-|-.-+++.+.|-
T Consensus 163 ~-------li~es~t~Fs~~~tGR~~c~gll~~L~l~~RqDl~S~v~~~v~P~~D~vt~ev~l~ 219 (440)
T KOG2357|consen 163 L-------LIKESETVFSSYATGRVNCKGLLLTLKLVKRQDLLSRVMNSVRPVGDQVTFEVTLN 219 (440)
T ss_pred h-------hhcccchhHHHHhcchhHHhhhhhhhhhhhhccHHHHHHHhcccccceEEEEEecC
Confidence 1 89999999999999999997533222233321111113344455555555555553
No 4
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=99.14 E-value=5.7e-10 Score=115.09 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=70.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHH--HHHHhhhhhhcCcceeccCCCccccchhhhhhccccccc
Q psy6771 139 LRSNWDSYYLELLMIAGLVAYIINFIT-GRNKNFKLATH--WINTHRALLEDNFSLVGDDGKQEIENSSLIKESENTFTL 215 (493)
Q Consensus 139 ~rs~~~e~~~E~~~l~~l~~y~i~~~~-G~~~N~~~A~~--wl~~~~~ll~~~Fa~vG~~g~~~~~~~~l~~e~e~~~~~ 215 (493)
|++||.|+.+.+++++|+++|++|+.. .++++.|+..+ .|+.+|+.+|.+....+ ++ |+++|.+.|++
T Consensus 1 ~~~~~~E~~~l~~l~~y~~~y~~G~~~N~~~A~~w~~~~~~~L~~~Fa~VG~~~~~~~-~~--------l~~~s~~~f~~ 71 (321)
T PF07946_consen 1 WYNFYLEIIFLAFLLLYVVNYFIGKSKNRRIAKAWFESHQPLLESNFALVGDDGSEKE-PL--------LIKDSPNEFTF 71 (321)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccc-HH--------HhhcCcceEEE
Confidence 788999999999999999999999999 99999999999 99999999999885442 22 88999999999
Q ss_pred cccCCCCCcc
Q psy6771 216 WCSGRDDGKQ 225 (493)
Q Consensus 216 wcsgr~~~~~ 225 (493)
|||||.+|..
T Consensus 72 yaTGR~~~~~ 81 (321)
T PF07946_consen 72 YATGRRNCEG 81 (321)
T ss_pred EEeCCCCeEE
Confidence 9999999964
No 5
>PRK10455 periplasmic protein; Reviewed
Probab=88.16 E-value=3.9 Score=38.61 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=27.8
Q ss_pred HHHhhccCCHHHHhhHHHHHHHHHhhhcCCCccc
Q psy6771 454 KEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMKQ 487 (493)
Q Consensus 454 rer~l~~lspeeQrK~eEKE~kke~KK~~~K~Kq 487 (493)
+.+|.+-|+||++.++.++..+|..+...++.||
T Consensus 123 ~~qiy~vLTPEQr~q~~~~~ekr~~~~~~~~~~~ 156 (161)
T PRK10455 123 QNKIYNVLTPEQKKQFNANFEKRLTERPAHEGKM 156 (161)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 4556678999999999999988888877777665
No 6
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=87.01 E-value=1.3 Score=52.82 Aligned_cols=7 Identities=14% Similarity=0.420 Sum_probs=4.0
Q ss_pred CcCcHHH
Q psy6771 261 KRQDLVG 267 (493)
Q Consensus 261 kRqdl~s 267 (493)
.+-|+|+
T Consensus 222 ~KSDVWS 228 (1021)
T PTZ00266 222 DKSDMWA 228 (1021)
T ss_pred chhHHHH
Confidence 3456766
No 7
>KOG0163|consensus
Probab=83.84 E-value=6.4 Score=45.34 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=13.4
Q ss_pred ecCCCccceEEEEEEecCcCc
Q psy6771 244 CSGRSCCEGMLVELKLIKRQD 264 (493)
Q Consensus 244 ATGR~nc~~l~v~l~L~kRqd 264 (493)
.||-..+-++--+.+++.||=
T Consensus 659 stGt~FiRCiKPN~kM~~~~F 679 (1259)
T KOG0163|consen 659 STGTHFIRCIKPNSKMIDRHF 679 (1259)
T ss_pred hcCCeeEEeecCccccccccc
Confidence 456666666666666666664
No 8
>KOG4364|consensus
Probab=83.52 E-value=2.9 Score=47.23 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=5.6
Q ss_pred HHHHHHHHhhHH
Q psy6771 414 EAKSKADKNRHR 425 (493)
Q Consensus 414 e~k~Ka~K~R~~ 425 (493)
+.+.|+.+.|.+
T Consensus 257 eEreK~R~erEr 268 (811)
T KOG4364|consen 257 EEREKERKERER 268 (811)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 9
>KOG1144|consensus
Probab=73.43 E-value=6 Score=45.69 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy6771 442 AALRKEEKRRLEKEK 456 (493)
Q Consensus 442 a~~kkeEkkk~erer 456 (493)
+.++|-+++|++++|
T Consensus 261 ak~kkKekekek~er 275 (1064)
T KOG1144|consen 261 AKEKKKEKEKEKKER 275 (1064)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333443333
No 10
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.89 E-value=21 Score=32.76 Aligned_cols=13 Identities=8% Similarity=0.373 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhh
Q psy6771 394 PLMQFVFYTLDRV 406 (493)
Q Consensus 394 ~Ll~lv~~liD~l 406 (493)
+++.+|+.=...|
T Consensus 37 Ei~~fi~~~~~~L 49 (132)
T PF11208_consen 37 EIYEFILKHWYKL 49 (132)
T ss_pred HHHHHHHHHHHHh
Confidence 4566666544445
No 11
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=66.90 E-value=24 Score=32.15 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=38.2
Q ss_pred HHHhhcccccCHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHhhHHHHHHH
Q psy6771 402 TLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAK 475 (493)
Q Consensus 402 liD~l~~~~ls~e~k~Ka~K~R~~~~~~~~K~~~~~r~E~a~~kkeEkkk~erer~l~~lspeeQrK~eEKE~k 475 (493)
|...|.+++--.+....+.+.|++++.++.....+++.+..+.+++.. -++|.+.. .+...+|.+.+++..+
T Consensus 16 LlGTL~kf~~e~~k~~~~~~rR~eie~rleek~~~e~e~l~~~~~~~~-~err~~~~-elr~~e~~~~~~~~~~ 87 (131)
T PF04696_consen 16 LLGTLQKFKKEEEKKTEQQKRRAEIEKRLEEKLKEEKEELRKERRELL-EERREKQR-ELRRLEQKKEEERLME 87 (131)
T ss_pred HHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 556777666543444667778888888776665555555444444221 11122211 3344566666554443
No 12
>KOG1029|consensus
Probab=64.54 E-value=26 Score=40.71 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=8.7
Q ss_pred HHHhhHH-HHHHHHHhhhcCC
Q psy6771 464 EKQRRWE-EKEAKRQMKKKTP 483 (493)
Q Consensus 464 eeQrK~e-EKE~kke~KK~~~ 483 (493)
|+||+.+ |+-|.++|--+++
T Consensus 406 EkqRqlewErar~qem~~Qk~ 426 (1118)
T KOG1029|consen 406 EKQRQLEWERARRQEMLNQKN 426 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 4555554 4444444433333
No 13
>PLN03086 PRLI-interacting factor K; Provisional
Probab=57.22 E-value=38 Score=38.21 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6771 440 EAAALRKEEKRRLEKEK 456 (493)
Q Consensus 440 E~a~~kkeEkkk~erer 456 (493)
|+|+++|++..+.-+.|
T Consensus 35 ~~~~~~~~~~~~~~~~~ 51 (567)
T PLN03086 35 EEAAKQREAIEAAQRSR 51 (567)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 14
>KOG2002|consensus
Probab=57.04 E-value=72 Score=38.09 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=5.8
Q ss_pred HHHHHHHHHHh
Q psy6771 171 FKLATHWINTH 181 (493)
Q Consensus 171 ~~~A~~wl~~~ 181 (493)
..-|..|+...
T Consensus 546 ~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 546 LYEASLLLKDA 556 (1018)
T ss_pred cHHHHHHHHHH
Confidence 44455566653
No 15
>KOG2412|consensus
Probab=56.05 E-value=67 Score=36.03 Aligned_cols=11 Identities=27% Similarity=0.235 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q psy6771 394 PLMQFVFYTLD 404 (493)
Q Consensus 394 ~Ll~lv~~liD 404 (493)
.....|+.-+|
T Consensus 186 e~Q~qv~qsl~ 196 (591)
T KOG2412|consen 186 EEQNQVLQSLD 196 (591)
T ss_pred HHHHHHHHHHH
Confidence 34444454444
No 16
>KOG2891|consensus
Probab=53.58 E-value=51 Score=34.09 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=26.3
Q ss_pred eeEEecCCCcc---ceEEEEEEecCcCcHHHHHHh-----hcCCC--CCeEEEE
Q psy6771 240 FTLWCSGRSCC---EGMLVELKLIKRQDLVGLIAQ-----LIRPS--TDQLSMS 283 (493)
Q Consensus 240 F~~yATGR~nc---~~l~v~l~L~kRqdl~s~~~~-----~~~p~--~D~v~i~ 283 (493)
|++-.||=..+ ...-+.|.+..|||-=++|++ -+.|. .|+|.+.
T Consensus 102 fsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la 155 (445)
T KOG2891|consen 102 FSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLA 155 (445)
T ss_pred CeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeec
Confidence 45555554433 233457888999998777764 33443 4666554
No 17
>KOG4055|consensus
Probab=53.58 E-value=73 Score=30.98 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHhhHHHHHHHHHhhhcCCCc
Q psy6771 440 EAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKM 485 (493)
Q Consensus 440 E~a~~kkeEkkk~erer~l~~lspeeQrK~eEKE~kke~KK~~~K~ 485 (493)
++-+.+.++.+++..++ ++..+.|...+.++.+.|+..|++
T Consensus 110 aefq~r~ek~~kaaEeK-----TaKKRaKRqk~Kq~akkkklakk~ 150 (213)
T KOG4055|consen 110 AEFQIRLEKNQKAAEEK-----TAKKRAKRQKKKQKAKKKKLAKKT 150 (213)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhccccc
Confidence 45556666666665555 333444444444433344444443
No 18
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=53.33 E-value=75 Score=28.32 Aligned_cols=20 Identities=15% Similarity=0.018 Sum_probs=8.1
Q ss_pred HHHHHhhHHHHHHHhhhhHH
Q psy6771 417 SKADKNRHRVEEAFLKTTHV 436 (493)
Q Consensus 417 ~Ka~K~R~~~~~~~~K~~~~ 436 (493)
.++.|.++.++.+-.++..+
T Consensus 43 ~~~~K~~ekElKeEKe~er~ 62 (108)
T PF03879_consen 43 LKAIKEKEKELKEEKEAERQ 62 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333
No 19
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=51.26 E-value=84 Score=29.31 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy6771 439 AEAAALRKEEKRRLEKEKI 457 (493)
Q Consensus 439 ~E~a~~kkeEkkk~erer~ 457 (493)
.++-+.++++.+++..++.
T Consensus 65 ~~eF~~kree~~~~~eekT 83 (142)
T PF06658_consen 65 DEEFQRKREERKKEAEEKT 83 (142)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666654
No 20
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=51.18 E-value=34 Score=37.31 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhhhH
Q psy6771 146 YYLELLMIAGLVAYIINFI-TGRNKNF 171 (493)
Q Consensus 146 ~~~E~~~l~~l~~y~i~~~-~G~~~N~ 171 (493)
|..-++++++++=.++..+ +...++.
T Consensus 32 W~isIi~ltiiVRliLlPL~~~q~ks~ 58 (429)
T PRK00247 32 WFASLFGLVITVRAIIAPFTWQQYKSG 58 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433 2343433
No 21
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=50.79 E-value=1.5e+02 Score=28.07 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=26.5
Q ss_pred HHHHHHHHhhccCCHHHHhhHHHHHHHHHhhhcCCCcc
Q psy6771 449 KRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMK 486 (493)
Q Consensus 449 kkk~erer~l~~lspeeQrK~eEKE~kke~KK~~~K~K 486 (493)
.+.+-..++.+-|+||++.++-+..++|..........
T Consensus 119 ~r~k~~~~m~~vLTPEQr~~l~~~~~~r~~~~~~~~~~ 156 (160)
T COG3678 119 LRVKSDNQMYQVLTPEQRAKLQELLAQRREERQQRGGG 156 (160)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33344555667789999989998888877776555443
No 22
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=49.51 E-value=30 Score=30.62 Aligned_cols=14 Identities=21% Similarity=0.416 Sum_probs=11.1
Q ss_pred hccCCHHHHhhHHH
Q psy6771 458 MQEEDPEKQRRWEE 471 (493)
Q Consensus 458 l~~lspeeQrK~eE 471 (493)
+.+|+||||.++.+
T Consensus 87 le~l~~eE~~~L~~ 100 (104)
T PF11460_consen 87 LEELSPEELEALQA 100 (104)
T ss_pred HHhCCHHHHHHHHH
Confidence 45899999988863
No 23
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=49.16 E-value=1.3e+02 Score=28.72 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=19.2
Q ss_pred HHHhhccCCHHHHhhHHHHHHHHHhh
Q psy6771 454 KEKIMQEEDPEKQRRWEEKEAKRQMK 479 (493)
Q Consensus 454 rer~l~~lspeeQrK~eEKE~kke~K 479 (493)
+-++..-|+||++.+|.+...+|-.+
T Consensus 130 ~~~~~~vLTpEQRak~~e~~~~r~~~ 155 (170)
T PRK12750 130 RHQMLSILTPEQKAKFQELQQERMQE 155 (170)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33456789999999999877666443
No 24
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.52 E-value=1.2e+02 Score=31.74 Aligned_cols=15 Identities=7% Similarity=0.341 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhh
Q psy6771 392 MKPLMQFVFYTLDRV 406 (493)
Q Consensus 392 ~~~Ll~lv~~liD~l 406 (493)
+...=.+|++|+..+
T Consensus 99 LE~vEdii~nL~~~~ 113 (309)
T TIGR00570 99 LEEVEDIVYNLTNNI 113 (309)
T ss_pred HHHHHHHHHHhhcCC
Confidence 445556666666554
No 25
>KOG1991|consensus
Probab=46.61 E-value=21 Score=42.39 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=9.6
Q ss_pred CCCCCCCCCcccccccc
Q psy6771 39 HGQFNDQFKDDEFADFE 55 (493)
Q Consensus 39 ~~~~~~d~d~~eF~efe 55 (493)
++++.+++++++|-+.+
T Consensus 891 e~~~~~~~~~e~~~~d~ 907 (1010)
T KOG1991|consen 891 EGEEEDDDEEEDFIDDE 907 (1010)
T ss_pred cccCCCCcchhhccCcc
Confidence 33455666677775443
No 26
>KOG3054|consensus
Probab=46.40 E-value=61 Score=32.93 Aligned_cols=14 Identities=43% Similarity=0.366 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q psy6771 152 MIAGLVAYIINFIT 165 (493)
Q Consensus 152 ~l~~l~~y~i~~~~ 165 (493)
.++.|+++++.++|
T Consensus 10 aa~llV~~i~l~l~ 23 (299)
T KOG3054|consen 10 AAALLVAVILLFLW 23 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 27
>PLN03086 PRLI-interacting factor K; Provisional
Probab=45.82 E-value=24 Score=39.78 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=2.6
Q ss_pred HHhhHH
Q psy6771 465 KQRRWE 470 (493)
Q Consensus 465 eQrK~e 470 (493)
.|||++
T Consensus 49 ~~~~~~ 54 (567)
T PLN03086 49 RSRRLD 54 (567)
T ss_pred HHHHHH
Confidence 444443
No 28
>KOG3756|consensus
Probab=45.43 E-value=1.4e+02 Score=31.34 Aligned_cols=52 Identities=12% Similarity=0.261 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy6771 394 PLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEE 448 (493)
Q Consensus 394 ~Ll~lv~~liD~l~~~~ls~e~k~Ka~K~R~~~~~~~~K~~~~~r~E~a~~kkeE 448 (493)
.||. .|+=.|.+|+-......+....|+++++++.+...+++++-..++++.
T Consensus 143 RmFG---~LlGTL~KFkqE~kr~t~rq~KraEieqKlEeq~~eE~e~l~~qe~~l 194 (340)
T KOG3756|consen 143 RMFG---LLLGTLQKFKQESKRATERQVKRAEIEQKLEEQAEEEREQLEKQEREL 194 (340)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 456667777765555555677788888888888777776666665544
No 29
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=43.26 E-value=41 Score=36.73 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=3.9
Q ss_pred ccceEEEE
Q psy6771 249 CCEGMLVE 256 (493)
Q Consensus 249 nc~~l~v~ 256 (493)
+|--++++
T Consensus 105 gcLP~LIQ 112 (429)
T PRK00247 105 GCVPALIQ 112 (429)
T ss_pred HHHHHHHH
Confidence 55554443
No 30
>KOG0163|consensus
Probab=40.13 E-value=1.2e+02 Score=35.70 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=5.3
Q ss_pred HHHHHHHHHhh
Q psy6771 448 EKRRLEKEKIM 458 (493)
Q Consensus 448 Ekkk~erer~l 458 (493)
|++++++++..
T Consensus 952 e~k~~k~e~e~ 962 (1259)
T KOG0163|consen 952 EKKRAKAEMET 962 (1259)
T ss_pred HHHHHHHHHHH
Confidence 34455555444
No 31
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=38.29 E-value=23 Score=38.60 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=6.3
Q ss_pred HHhhHHHHHHHhhh
Q psy6771 420 DKNRHRVEEAFLKT 433 (493)
Q Consensus 420 ~K~R~~~~~~~~K~ 433 (493)
.|.||+--++|...
T Consensus 396 EkKRQrRKEKf~rk 409 (458)
T PF10446_consen 396 EKKRQRRKEKFWRK 409 (458)
T ss_pred hhhhhhhhHHHHHH
Confidence 44444444444433
No 32
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=38.17 E-value=41 Score=38.61 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhcccc-----------cCHHHHHHHHHhhHH
Q psy6771 393 KPLMQFVFYTLDRVKRFR-----------LSREAKSKADKNRHR 425 (493)
Q Consensus 393 ~~Ll~lv~~liD~l~~~~-----------ls~e~k~Ka~K~R~~ 425 (493)
.+++..++.+=+.+++.. ........+++.|.+
T Consensus 483 ~~~i~~l~~~R~~~R~~a~~~~~~~~~~~~~~~~~~~~D~iRd~ 526 (651)
T PTZ00399 483 KPLLEALLRFRDEVRDAAKAEMKLISLDKKKKQLLQLCDKLRDE 526 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhhhhhHHHHHHHHHHH
Confidence 356666666666666322 222556677888875
No 33
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=37.59 E-value=2.2e+02 Score=26.74 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Q psy6771 394 PLMQFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAA 443 (493)
Q Consensus 394 ~Ll~lv~~liD~l~~~~ls~e~k~Ka~K~R~~~~~~~~K~~~~~r~E~a~ 443 (493)
.++.+++-+. .|++|--.| ..+....|++.+..-+...+..|+|+++
T Consensus 10 q~I~FlIll~-ll~kfawkP--I~~~LeeR~~~I~~~Ld~Ae~~r~eA~~ 56 (154)
T PRK06568 10 LAVSFVIFVY-LIYRPAKKA--ILNSLDAKILEVQEKVLKAEKLKEDAAL 56 (154)
T ss_pred HHHHHHHHHH-HHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444322 255554333 2333333444433333344444444443
No 34
>COG3122 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.57 E-value=97 Score=30.15 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhccCCHHHHhhHHHHHHHHHhhh
Q psy6771 447 EEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKK 480 (493)
Q Consensus 447 eEkkk~erer~l~~lspeeQrK~eEKE~kke~KK 480 (493)
+++.+.||++- ||-.++.+.+.||.|-+-|.
T Consensus 85 ~Kaeqlerdk~---l~~qQk~~a~~ke~kAqvkq 115 (215)
T COG3122 85 NKAEQLERDKQ---LSEQQKQAALAKEYKAQVKQ 115 (215)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 33455677773 46667777777777766653
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.45 E-value=1.4e+02 Score=31.24 Aligned_cols=12 Identities=33% Similarity=0.349 Sum_probs=5.6
Q ss_pred HHHHHHHhcccC
Q psy6771 330 KFLTIVNKFSDL 341 (493)
Q Consensus 330 ~li~~l~~~~~~ 341 (493)
.+.+.+|+-.+-
T Consensus 77 rv~~i~Nk~e~d 88 (309)
T TIGR00570 77 RVLKIYNKREED 88 (309)
T ss_pred HHHHHHccchhc
Confidence 344555554333
No 36
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=36.59 E-value=53 Score=34.10 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=6.2
Q ss_pred hHHHHHHHHH
Q psy6771 391 EMKPLMQFVF 400 (493)
Q Consensus 391 ~~~~Ll~lv~ 400 (493)
.+.|++...+
T Consensus 129 EV~PiLeVLV 138 (291)
T PF06098_consen 129 EVKPILEVLV 138 (291)
T ss_pred hhhhHHHHHH
Confidence 4667776655
No 37
>KOG2412|consensus
Probab=36.09 E-value=1.2e+02 Score=34.14 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=6.6
Q ss_pred HHHHhhHHHHHHHhhh
Q psy6771 418 KADKNRHRVEEAFLKT 433 (493)
Q Consensus 418 Ka~K~R~~~~~~~~K~ 433 (493)
+..+.|.+.++...+.
T Consensus 203 ~~~~q~~eqi~~~~~~ 218 (591)
T KOG2412|consen 203 QREKQRKEQIRERKER 218 (591)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 38
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=35.04 E-value=42 Score=39.24 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=3.4
Q ss_pred Ccchhhh
Q psy6771 14 SPTMKFK 20 (493)
Q Consensus 14 ~~~~~~~ 20 (493)
|.+||-+
T Consensus 602 s~llR~~ 608 (784)
T PF04931_consen 602 SALLRKV 608 (784)
T ss_pred chHHHHH
Confidence 4445554
No 39
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=34.24 E-value=99 Score=30.15 Aligned_cols=9 Identities=33% Similarity=0.276 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy6771 437 ARAEAAALR 445 (493)
Q Consensus 437 ~r~E~a~~k 445 (493)
+++|+.++.
T Consensus 80 ~rqEa~eaA 88 (190)
T PF06936_consen 80 RRQEAMEAA 88 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444333
No 40
>KOG2002|consensus
Probab=30.75 E-value=1.5e+02 Score=35.56 Aligned_cols=6 Identities=17% Similarity=-0.186 Sum_probs=2.4
Q ss_pred ecCcCc
Q psy6771 259 LIKRQD 264 (493)
Q Consensus 259 L~kRqd 264 (493)
..+|.+
T Consensus 658 ~kg~~~ 663 (1018)
T KOG2002|consen 658 EKGRFS 663 (1018)
T ss_pred hccCch
Confidence 344443
No 41
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=30.28 E-value=1.6e+02 Score=29.29 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=20.6
Q ss_pred HHHHHhhcccccCHHHHHHHHHhhHHHHHHH
Q psy6771 400 FYTLDRVKRFRLSREAKSKADKNRHRVEEAF 430 (493)
Q Consensus 400 ~~liD~l~~~~ls~e~k~Ka~K~R~~~~~~~ 430 (493)
..|-+.+..++.....+......|++.+.+-
T Consensus 99 ~sl~em~k~~~~~~~~k~~k~~~Rek~Ia~n 129 (217)
T PF10147_consen 99 PSLQEMLKELREKKEEKEEKRLAREKEIAKN 129 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777777777887776543
No 42
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=29.99 E-value=23 Score=31.15 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy6771 145 SYYLELLMIAGLVAYIINFITGRNKNFK 172 (493)
Q Consensus 145 e~~~E~~~l~~l~~y~i~~~~G~~~N~~ 172 (493)
=|-+++.+-+.++.|++||++|++++..
T Consensus 70 LFaLQAAiGAgiIgY~lG~~~gr~~~~~ 97 (100)
T PRK02898 70 LFALQAALGAGIIGYILGYYKGRSKRRN 97 (100)
T ss_pred HHHHHHHHhhhhhheeeeehhhhhhhhh
Confidence 4668899999999999999999887653
No 43
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=29.74 E-value=2.3e+02 Score=32.70 Aligned_cols=9 Identities=11% Similarity=0.416 Sum_probs=5.4
Q ss_pred HHHHHHhhc
Q psy6771 399 VFYTLDRVK 407 (493)
Q Consensus 399 v~~liD~l~ 407 (493)
.+.+.|.++
T Consensus 516 ~~~~~D~iR 524 (651)
T PTZ00399 516 LLQLCDKLR 524 (651)
T ss_pred HHHHHHHHH
Confidence 356667665
No 44
>KOG0388|consensus
Probab=29.62 E-value=1.4e+02 Score=35.03 Aligned_cols=29 Identities=38% Similarity=0.588 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhccCCHHHHhhHHHHHHHHHhhh
Q psy6771 447 EEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKK 480 (493)
Q Consensus 447 eEkkk~erer~l~~lspeeQrK~eEKE~kke~KK 480 (493)
..+||+|||.+-+ ..|-.|+||-+||+||
T Consensus 425 d~rKK~EkEamer-----~KrEeEerEskRQark 453 (1185)
T KOG0388|consen 425 DLRKKAEKEAMER-----AKREEEERESKRQARK 453 (1185)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 4455666666321 1233346666777665
No 45
>PF04644 Motilin_ghrelin: Motilin/ghrelin; InterPro: IPR006738 Motilin is a gastrointestinal regulatory polypeptide produced by motilin cells in the duodenal epithelium. It is released into the general circulation at about 100-min intervals during the inter-digestive state and is the most important factor in controlling the inter-digestive migrating contractions. Motilin also stimulates endogenous release of the endocrine pancreas []. This domain is also found in ghrelin, a growth hormone secretagogue synthesised by endocrine cells in the stomach. Ghrelin stimulates growth hormone secretagogue receptors in the pituitary. These receptors are distinct from the growth hormone-releasing hormone receptors, and thus provide a means of controlling pituitary growth hormone release by the gastrointestinal system [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LBJ_A.
Probab=29.59 E-value=39 Score=22.98 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=10.4
Q ss_pred CHHHHhhHHHHHHHHHhhh
Q psy6771 462 DPEKQRRWEEKEAKRQMKK 480 (493)
Q Consensus 462 speeQrK~eEKE~kke~KK 480 (493)
+||-||- .|||++|-++|
T Consensus 6 ~~e~qr~-QekE~nk~~kK 23 (28)
T PF04644_consen 6 SSEHQRM-QEKERNKGQKK 23 (28)
T ss_dssp HHHHHHH-HHHHHHHH---
T ss_pred chHHHHH-HHHHhccCccc
Confidence 5655544 78888887776
No 46
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.35 E-value=82 Score=29.03 Aligned_cols=34 Identities=6% Similarity=0.089 Sum_probs=20.5
Q ss_pred eeeeccceeeEEecCCCccceEEEEEEecCcCcHHHHHH
Q psy6771 232 LIKESENTFTLWCSGRSCCEGMLVELKLIKRQDLVGLIA 270 (493)
Q Consensus 232 likEs~~~F~~yATGR~nc~~l~v~l~L~kRqdl~s~~~ 270 (493)
|.++=...|.-+|+|-.+.. ..|.-|+++++.+.
T Consensus 71 l~~dYqklyqHmA~ss~~Ll-----pel~~~~~~~~~l~ 104 (138)
T COG3105 71 LAQDYQKLYQHMAKSSTSLL-----PELSAKDNPFRNLL 104 (138)
T ss_pred HHHHHHHHHHHHHhhHhhhC-----ccccccccHHHHHH
Confidence 34444445666777766543 35667888887543
No 47
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=28.22 E-value=59 Score=33.60 Aligned_cols=17 Identities=6% Similarity=0.253 Sum_probs=8.9
Q ss_pred HhhcCCCCCeEEEEEEe
Q psy6771 270 AQLIRPSTDQLSMSFDL 286 (493)
Q Consensus 270 ~~~~~p~~D~v~i~v~l 286 (493)
++..-|+..+.++.-.+
T Consensus 142 y~~~V~pg~~aT~~YsF 158 (285)
T PF03896_consen 142 YNREVPPGEEATFPYSF 158 (285)
T ss_pred cCcccCCCCeEEEEEEE
Confidence 33344556666665544
No 48
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.79 E-value=1.5e+02 Score=27.36 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhh
Q psy6771 146 YYLELLMIAGLVAYIINFIT-GRNKN 170 (493)
Q Consensus 146 ~~~E~~~l~~l~~y~i~~~~-G~~~N 170 (493)
|...++++++++.|+|.++. |+.+|
T Consensus 10 ~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 10 YALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 44445555555555555555 55555
No 49
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=27.71 E-value=2.6e+02 Score=26.55 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.7
Q ss_pred HHhhccCCHHHHhhHHHHHHHHHhhh
Q psy6771 455 EKIMQEEDPEKQRRWEEKEAKRQMKK 480 (493)
Q Consensus 455 er~l~~lspeeQrK~eEKE~kke~KK 480 (493)
-++++-|+||++.+|.++-+++-.+-
T Consensus 124 ~qmy~lLTPEQra~l~~~~e~r~~~~ 149 (162)
T PRK12751 124 NQMYNLLTPEQKEALNKKHQERIEKL 149 (162)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999998888776664
No 50
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=27.48 E-value=1.8e+02 Score=23.80 Aligned_cols=19 Identities=11% Similarity=0.394 Sum_probs=13.2
Q ss_pred HHHhhccCCHHHHhhHHHH
Q psy6771 454 KEKIMQEEDPEKQRRWEEK 472 (493)
Q Consensus 454 rer~l~~lspeeQrK~eEK 472 (493)
...+..-|+||++.++.+.
T Consensus 81 ~~~~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 81 QHALYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHh
Confidence 4455677899999988754
No 51
>KOG3248|consensus
Probab=27.43 E-value=1.4e+02 Score=31.75 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=8.5
Q ss_pred cCCHHHHhhHHHHHH
Q psy6771 460 EEDPEKQRRWEEKEA 474 (493)
Q Consensus 460 ~lspeeQrK~eEKE~ 474 (493)
.||-|||.||=|--|
T Consensus 232 ~LSrEEQAKYyElAr 246 (421)
T KOG3248|consen 232 ALSREEQAKYYELAR 246 (421)
T ss_pred hhhHHHHHHHHHHHH
Confidence 456666666654333
No 52
>KOG4691|consensus
Probab=26.98 E-value=4.3e+02 Score=26.09 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=21.1
Q ss_pred eEEEEEEEecCCCCCccchHHhHHHHHHHHHHHHHhhcccc
Q psy6771 370 KVILFNFNLQMGQLSIQDTIDEMKPLMQFVFYTLDRVKRFR 410 (493)
Q Consensus 370 k~l~l~~~lP~~~~~~~d~~~~~~~Ll~lv~~liD~l~~~~ 410 (493)
|..+++.+.|+.. +- +....||..-=++-..|++++
T Consensus 44 Ksk~~rV~~~p~q----~p-ee~~eLm~r~~~Y~~~vrslR 79 (227)
T KOG4691|consen 44 KSKIERVNMPPAQ----DP-EEFFELMERYQHYRQTVRSLR 79 (227)
T ss_pred hhhhhccCCCccC----CH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666654 44 556667766655655665554
No 53
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=26.12 E-value=5.4e+02 Score=23.99 Aligned_cols=27 Identities=22% Similarity=0.060 Sum_probs=13.3
Q ss_pred HHHHHHhhHHHHHHHhhhhHHHHHHHH
Q psy6771 416 KSKADKNRHRVEEAFLKTTHVARAEAA 442 (493)
Q Consensus 416 k~Ka~K~R~~~~~~~~K~~~~~r~E~a 442 (493)
..++...|++.+..=+...+..++|+.
T Consensus 31 i~~~l~~R~~~I~~~l~~A~~~~~ea~ 57 (161)
T COG0711 31 ILKALDERQAKIADDLAEAERLKEEAQ 57 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444444444433
No 54
>PRK11677 hypothetical protein; Provisional
Probab=26.04 E-value=75 Score=29.29 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy6771 146 YYLELLMIAGLVAYIINFIT 165 (493)
Q Consensus 146 ~~~E~~~l~~l~~y~i~~~~ 165 (493)
+.+.++++++++.|+++++.
T Consensus 5 ~a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44556666666666666664
No 55
>COG4499 Predicted membrane protein [Function unknown]
Probab=25.21 E-value=2.4e+02 Score=30.60 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=25.1
Q ss_pred HHHhhcc-cccCHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Q psy6771 402 TLDRVKR-FRLSREAKSKADKNRHRVEEAFLKTTHVARAE 440 (493)
Q Consensus 402 liD~l~~-~~ls~e~k~Ka~K~R~~~~~~~~K~~~~~r~E 440 (493)
....+.+ -.||.+-+.+..|.=...++++.|...+.++|
T Consensus 352 ~~eevksn~~lsg~~r~e~lk~~n~~lqd~~k~~~e~k~e 391 (434)
T COG4499 352 LYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDE 391 (434)
T ss_pred HHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455544 66888888887776666666666665555444
No 56
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=24.97 E-value=64 Score=33.20 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q psy6771 142 NWDSYYLELLMIAGLVAYIINFIT 165 (493)
Q Consensus 142 ~~~e~~~E~~~l~~l~~y~i~~~~ 165 (493)
+.-++.+.+++|+|.||||+.+++
T Consensus 169 NFYNlr~lALflAFaINFILLFYK 192 (274)
T PF06459_consen 169 NFYNLRFLALFLAFAINFILLFYK 192 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677889999999999998886
No 57
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=24.69 E-value=4.6e+02 Score=23.12 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHhhHH
Q psy6771 444 LRKEEKRRLEKEKIMQEEDPEKQRRWE 470 (493)
Q Consensus 444 ~kkeEkkk~erer~l~~lspeeQrK~e 470 (493)
++|+..-++||++... +-.+|+++.
T Consensus 60 q~r~rES~~Er~K~~~--s~~~~q~Lm 84 (121)
T PF10669_consen 60 QKRNRESKRERQKFIW--SMNKQQSLM 84 (121)
T ss_pred HHHhhhhHHHHHhHHh--hhhHHHHHH
Confidence 3344334455666543 555666664
No 58
>KOG2505|consensus
Probab=24.26 E-value=1.4e+02 Score=33.40 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHhhHHHHHHHHHhhhc
Q psy6771 433 TTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKKK 481 (493)
Q Consensus 433 ~~~~~r~E~a~~kkeEkkk~erer~l~~lspeeQrK~eEKE~kke~KK~ 481 (493)
.++++.+|.++.+++++.++++++.++ ++.||.+||++--++-++
T Consensus 501 ltrEq~~eq~ekkkek~anqka~kk~k----kelrkaeekqk~ae~ser 545 (591)
T KOG2505|consen 501 LTREQEREQAEKKKEKKANQKAKKKLK----KELRKAEEKQKYAEMSER 545 (591)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHhh
No 59
>KOG2072|consensus
Probab=23.92 E-value=2.3e+02 Score=33.64 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=9.0
Q ss_pred ccccchhHHHHHHHH
Q psy6771 138 HLRSNWDSYYLELLM 152 (493)
Q Consensus 138 ~~rs~~~e~~~E~~~ 152 (493)
|++=-|.+|..++=+
T Consensus 151 WlkFLWeSYR~vLdl 165 (988)
T KOG2072|consen 151 WLKFLWESYRTVLDL 165 (988)
T ss_pred HHHHHHHHHHHHHHH
Confidence 655567777655443
No 60
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=23.70 E-value=3.3e+02 Score=26.00 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=25.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHhhHHHH
Q psy6771 426 VEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEK 472 (493)
Q Consensus 426 ~~~~~~K~~~~~r~E~a~~kkeEkkk~erer~l~~lspeeQrK~eEK 472 (493)
......+..++.|.--+..|+.-.++.++..-.++.+.++.+++++.
T Consensus 109 lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~ 155 (179)
T cd00520 109 LVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEED 155 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHH
Confidence 33344455555555555555554444444433334677777777543
No 61
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=22.92 E-value=4.2e+02 Score=26.05 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=3.2
Q ss_pred HHHhhc
Q psy6771 402 TLDRVK 407 (493)
Q Consensus 402 liD~l~ 407 (493)
|+|+++
T Consensus 13 L~dki~ 18 (207)
T PRK01005 13 ICDALR 18 (207)
T ss_pred HHHHHH
Confidence 455554
No 62
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=22.81 E-value=3.3e+02 Score=26.35 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=15.7
Q ss_pred HHHHHHHHhhccCCHHHHhhHHHHHHHHHhh
Q psy6771 449 KRRLEKEKIMQEEDPEKQRRWEEKEAKRQMK 479 (493)
Q Consensus 449 kkk~erer~l~~lspeeQrK~eEKE~kke~K 479 (493)
..+++|+|-| ..+.+...+.|+.+.+.|
T Consensus 51 ~ek~erdr~L---n~qr~~~~~~K~~~Aqik 78 (177)
T PF09831_consen 51 AEKAERDREL---NRQRQAEAERKEIQAQIK 78 (177)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4456777755 455555555555555544
No 63
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=21.69 E-value=4.4e+02 Score=25.40 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHhhHHHH
Q psy6771 424 HRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEK 472 (493)
Q Consensus 424 ~~~~~~~~K~~~~~r~E~a~~kkeEkkk~erer~l~~lspeeQrK~eEK 472 (493)
++......+..++.|.--+.-||.-.++.++-+.-+++|.++++++++.
T Consensus 111 ~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~e 159 (185)
T PRK00083 111 KELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDE 159 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 3333344455555555555555544333333222234677777777643
No 64
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=21.54 E-value=2.8e+02 Score=23.28 Aligned_cols=62 Identities=16% Similarity=0.358 Sum_probs=37.1
Q ss_pred HHHHHHHHhc-ccCccEEEEecCCCCCCCcccccccCCCCCceEEEEEEEecCCCCCccchHHhHHHHHHHHHH
Q psy6771 329 SKFLTIVNKF-SDLIDYIHISDQFSGPKQTEETTLTKLPDVKKVILFNFNLQMGQLSIQDTIDEMKPLMQFVFY 401 (493)
Q Consensus 329 ~~li~~l~~~-~~~le~i~iTDQps~p~~~~e~~~~~~p~~~k~l~l~~~lP~~~~~~~d~~~~~~~Ll~lv~~ 401 (493)
..+.+++.++ +++++.+.+-|.|.++.. |..++-+-+++.+-+...+..+- .+..++..++.
T Consensus 21 ~~i~~~i~~~~~~~l~~v~l~D~y~~~~l---------~~g~kS~~~rl~~~~~~~TLt~~--ev~~~~~~i~~ 83 (94)
T PF03147_consen 21 ADIEEVIRSAGGPLLESVELFDVYRGEKL---------PEGKKSLTYRLTYQSPDRTLTDE--EVNEIHDKIIK 83 (94)
T ss_dssp HHHHHHHHHHHTTTEEEEEEEEEEESTTS---------GTTEEEEEEEEEE--SSS---HH--HHHHHHHHHHH
T ss_pred HHHHHHHHHhCccceeEEEEEEEEcCCCC---------CCCcEEEEEEEEEECCCCCCCHH--HHHHHHHHHHH
Confidence 4577777764 589999999999988532 22556677777776655433332 34455555444
No 65
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=21.38 E-value=1.4e+02 Score=23.99 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHHH
Q psy6771 19 FKLKLSILLLLVT 31 (493)
Q Consensus 19 ~~~~~~~~~~~l~ 31 (493)
+++..|++++|++
T Consensus 5 l~vialLC~aLva 17 (65)
T PF10731_consen 5 LIVIALLCVALVA 17 (65)
T ss_pred hhHHHHHHHHHHH
Confidence 3333334444444
No 66
>KOG4661|consensus
Probab=21.34 E-value=2.1e+02 Score=32.55 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=9.8
Q ss_pred eEEEechhhhHhhh
Q psy6771 313 FNVMSEIAEVSSSL 326 (493)
Q Consensus 313 ~~vmSEs~Eit~~i 326 (493)
||.||-|+|+|..|
T Consensus 451 fVTMSts~eAtkCI 464 (940)
T KOG4661|consen 451 FVTMSTSAEATKCI 464 (940)
T ss_pred EEEecchHHHHHHH
Confidence 77777777776554
No 67
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=21.06 E-value=3.9e+02 Score=29.95 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=30.1
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH--HHH-----HHHHHhhccCCHHHHhhHH
Q psy6771 417 SKADKNRHRVEEAFLKTTHVARAEAAALRKEE--KRR-----LEKEKIMQEEDPEKQRRWE 470 (493)
Q Consensus 417 ~Ka~K~R~~~~~~~~K~~~~~r~E~a~~kkeE--kkk-----~erer~l~~lspeeQrK~e 470 (493)
+++.+-| +..+++.|+..++|+-.-.++|++ |+| .-|++.. +|+||+.....
T Consensus 430 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 488 (505)
T PRK00478 430 QRQQEQE-QALKESIKQIQEERAISNFQKREEYLKKKYGEYYLSREQYQ-KLTPEEKINIR 488 (505)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHh-hcChhhhhHHH
Confidence 3333333 334444555566666666677776 322 3567776 78999855443
No 68
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=20.98 E-value=3.6e+02 Score=24.85 Aligned_cols=8 Identities=25% Similarity=0.435 Sum_probs=6.1
Q ss_pred ccCCHHHH
Q psy6771 459 QEEDPEKQ 466 (493)
Q Consensus 459 ~~lspeeQ 466 (493)
.++||++.
T Consensus 68 ~Git~eeL 75 (134)
T PRK10328 68 DGINPEEL 75 (134)
T ss_pred hCCCHHHH
Confidence 46789887
No 69
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.59 E-value=3.3e+02 Score=26.81 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=16.6
Q ss_pred ccccCHHHHHHHHHhhHHHHHHHhhh
Q psy6771 408 RFRLSREAKSKADKNRHRVEEAFLKT 433 (493)
Q Consensus 408 ~~~ls~e~k~Ka~K~R~~~~~~~~K~ 433 (493)
++-++.+...|+.+.|.+.++.+.=.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
T PRK12585 120 SLIIRQEQIEKARQEREELEERMEWE 145 (197)
T ss_pred hhhccHHHHHHHHHhHHHHHHHHHHH
Confidence 45577777777777776666554433
No 70
>KOG3272|consensus
Probab=20.55 E-value=2.5e+02 Score=27.64 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=12.5
Q ss_pred hhccCCHHHHhhHHHHHHHHHhhhc
Q psy6771 457 IMQEEDPEKQRRWEEKEAKRQMKKK 481 (493)
Q Consensus 457 ~l~~lspeeQrK~eEKE~kke~KK~ 481 (493)
+..+.++-++.-...|+.++++|..
T Consensus 162 ~~~Er~~rekee~l~k~~k~e~rsy 186 (207)
T KOG3272|consen 162 IEQERSKREKEEMLWKEEKAELRSY 186 (207)
T ss_pred HHHhhhhHHHHHHHhHHHHHHhhhh
Confidence 3333455455444455566665543
No 71
>PTZ00491 major vault protein; Provisional
Probab=20.40 E-value=1.9e+02 Score=34.29 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCHHHHhhHH
Q psy6771 436 VARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWE 470 (493)
Q Consensus 436 ~~r~E~a~~kkeEkkk~erer~l~~lspeeQrK~e 470 (493)
++|+++...+.+.+=+.||+||..+..+|++||-+
T Consensus 667 ~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r~~l 701 (850)
T PTZ00491 667 AARHQAELLEQEARGRLERQKMHDKAKAEEQRTKL 701 (850)
T ss_pred HHHHHHHHHHHHhhchhHHHhhhhHHHHHHHHHHH
Confidence 34445555555555566666666555555555543
No 72
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=20.30 E-value=1.9e+02 Score=27.99 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=9.8
Q ss_pred ccCCHHHHhhHHHHHHH
Q psy6771 459 QEEDPEKQRRWEEKEAK 475 (493)
Q Consensus 459 ~~lspeeQrK~eEKE~k 475 (493)
++||.++-+...-+.-+
T Consensus 144 AglT~eEAk~~Ll~~le 160 (201)
T PF12072_consen 144 AGLTAEEAKEILLEKLE 160 (201)
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 46777776665533333
No 73
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=20.23 E-value=5.4e+02 Score=24.06 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=18.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHhhHH
Q psy6771 429 AFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWE 470 (493)
Q Consensus 429 ~~~K~~~~~r~E~a~~kkeEkkk~erer~l~~lspeeQrK~e 470 (493)
...+..++.|..-+..|+.-.++.++.+--+..+.+..++++
T Consensus 98 ~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~ 139 (165)
T PF01765_consen 98 QAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLE 139 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHH
Confidence 333444444444444444444443333322235666666664
No 74
>KOG0241|consensus
Probab=20.01 E-value=5e+02 Score=31.69 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=23.1
Q ss_pred CCCCceEEEEEEEecCCCCCccchHHhHHHHHHHHHHHHHhhccc
Q psy6771 365 LPDVKKVILFNFNLQMGQLSIQDTIDEMKPLMQFVFYTLDRVKRF 409 (493)
Q Consensus 365 ~p~~~k~l~l~~~lP~~~~~~~d~~~~~~~Ll~lv~~liD~l~~~ 409 (493)
+....+++.+..-=|... +| +.+.. .+++.|+.+++
T Consensus 316 LGGNsrTvMiatvSPaAd----ny-eeTlS----tLRYadrAkrI 351 (1714)
T KOG0241|consen 316 LGGNSRTVMIATVSPAAD----NY-EETLS----TLRYADRAKRI 351 (1714)
T ss_pred cCCCceeEEEEEeccccc----ch-HHHHH----HHHHHHHHHHh
Confidence 334668888877666655 78 65432 45678887754
No 75
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=20.01 E-value=3.4e+02 Score=26.19 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=10.6
Q ss_pred HHHhhcccccCHHHHHHHHHhhHHHHH
Q psy6771 402 TLDRVKRFRLSREAKSKADKNRHRVEE 428 (493)
Q Consensus 402 liD~l~~~~ls~e~k~Ka~K~R~~~~~ 428 (493)
|+|++++ ..-.++..++.+...+..+
T Consensus 8 l~dki~~-~~~eeA~~eA~~Ii~eA~~ 33 (198)
T PRK01558 8 LINKIKK-DGLEEAERLANEIILEAKE 33 (198)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4555542 2233344444444333333
Done!