Query psy6771
Match_columns 493
No_of_seqs 177 out of 259
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 17:59:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3itf_A Periplasmic adaptor pro 64.8 32 0.0011 30.7 9.1 25 455-479 113-137 (145)
2 3nr7_A DNA-binding protein H-N 52.8 29 0.001 28.4 6.1 8 459-466 71-78 (86)
3 3oeo_A Spheroplast protein Y; 42.0 14 0.00047 32.6 2.7 27 454-480 100-126 (138)
4 3o39_A Periplasmic protein rel 35.9 70 0.0024 27.0 6.1 23 454-476 84-106 (108)
5 1lbj_A Motilin; A-helix, B-tur 33.8 29 0.001 22.0 2.4 19 463-481 7-25 (26)
6 3zs9_C Golgi to ER traffic pro 33.6 28 0.00095 24.3 2.5 12 459-470 2-13 (38)
7 3v6i_A V-type ATP synthase sub 28.6 69 0.0024 29.0 5.2 36 411-446 7-42 (187)
8 2zuo_A MVP, major vault protei 17.9 2.2E+02 0.0077 32.2 7.3 16 388-403 650-665 (861)
9 3sjd_D Golgi to ER traffic pro 17.5 72 0.0025 23.0 2.2 11 460-470 13-23 (46)
10 1ise_A Ribosome recycling fact 16.9 5.1E+02 0.017 23.8 8.5 15 460-474 147-161 (185)
No 1
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=64.83 E-value=32 Score=30.67 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=19.5
Q ss_pred HHhhccCCHHHHhhHHHHHHHHHhh
Q psy6771 455 EKIMQEEDPEKQRRWEEKEAKRQMK 479 (493)
Q Consensus 455 er~l~~lspeeQrK~eEKE~kke~K 479 (493)
-++.+-|+||++.++.++..+|-.+
T Consensus 113 ~qiy~vLTPEQk~ql~e~~~~r~~~ 137 (145)
T 3itf_A 113 NQMYRLLTPEQQAVLNEKHQQRMEQ 137 (145)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 3566679999999998888777554
No 2
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=52.75 E-value=29 Score=28.37 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=5.6
Q ss_pred ccCCHHHH
Q psy6771 459 QEEDPEKQ 466 (493)
Q Consensus 459 ~~lspeeQ 466 (493)
.|+||++.
T Consensus 71 ~GI~~eeL 78 (86)
T 3nr7_A 71 DGIDPNEL 78 (86)
T ss_dssp TCCCHHHH
T ss_pred cCCCHHHH
Confidence 56788764
No 3
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=42.03 E-value=14 Score=32.60 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=17.1
Q ss_pred HHHhhccCCHHHHhhHHHHHHHHHhhh
Q psy6771 454 KEKIMQEEDPEKQRRWEEKEAKRQMKK 480 (493)
Q Consensus 454 rer~l~~lspeeQrK~eEKE~kke~KK 480 (493)
+-++.+-|+||++.++.+...+|..+.
T Consensus 100 ~~~~~~vLTPEQr~q~~~~~~kr~~~~ 126 (138)
T 3oeo_A 100 QNKIYNILTPEQKKQFNANFEKRLTER 126 (138)
T ss_dssp HHHHHTTSCHHHHHHHHHHTC------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 345667799999999998877765543
No 4
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=35.91 E-value=70 Score=27.04 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=18.0
Q ss_pred HHHhhccCCHHHHhhHHHHHHHH
Q psy6771 454 KEKIMQEEDPEKQRRWEEKEAKR 476 (493)
Q Consensus 454 rer~l~~lspeeQrK~eEKE~kk 476 (493)
+-++.+-|+||++.+|.++..+|
T Consensus 84 ~~qmy~lLTPEQk~q~~~~~~~r 106 (108)
T 3o39_A 84 QNKIYNILTPEQKKQFNANFEKR 106 (108)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHHhh
Confidence 45677889999999998776554
No 5
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=33.78 E-value=29 Score=22.05 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHhhhc
Q psy6771 463 PEKQRRWEEKEAKRQMKKK 481 (493)
Q Consensus 463 peeQrK~eEKE~kke~KK~ 481 (493)
-.+.+|..||||.|-+||+
T Consensus 7 ~selqr~qEkErNkgqkKs 25 (26)
T 1lbj_A 7 YGELQRMQEKERNKGQXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccCCccC
Confidence 3466778888888877764
No 6
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=33.57 E-value=28 Score=24.31 Aligned_cols=12 Identities=25% Similarity=0.255 Sum_probs=7.8
Q ss_pred ccCCHHHHhhHH
Q psy6771 459 QEEDPEKQRRWE 470 (493)
Q Consensus 459 ~~lspeeQrK~e 470 (493)
.+||+++|+++.
T Consensus 2 sels~~ekaRlr 13 (38)
T 3zs9_C 2 SELTEAEKRRLL 13 (38)
T ss_dssp --CCHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 467888888775
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=28.58 E-value=69 Score=28.97 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=22.7
Q ss_pred cCHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q psy6771 411 LSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRK 446 (493)
Q Consensus 411 ls~e~k~Ka~K~R~~~~~~~~K~~~~~r~E~a~~kk 446 (493)
|..++..++.+.+++...+..+...++++++.+...
T Consensus 7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~ 42 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQ 42 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777776666665555555444433
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=17.88 E-value=2.2e+02 Score=32.23 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=9.5
Q ss_pred hHHhHHHHHHHHHHHH
Q psy6771 388 TIDEMKPLMQFVFYTL 403 (493)
Q Consensus 388 ~~~~~~~Ll~lv~~li 403 (493)
.++.+..-+++++.+.
T Consensus 650 trd~LqkSVqlAiEIt 665 (861)
T 2zuo_A 650 TRDALQRSVQLAIEIT 665 (861)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666666655
No 9
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=17.47 E-value=72 Score=23.01 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=6.8
Q ss_pred cCCHHHHhhHH
Q psy6771 460 EEDPEKQRRWE 470 (493)
Q Consensus 460 ~lspeeQrK~e 470 (493)
+++++||+++.
T Consensus 13 ~lsa~EkaRLr 23 (46)
T 3sjd_D 13 ELTEAEKRRLL 23 (46)
T ss_dssp --CHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 56777777775
No 10
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=16.91 E-value=5.1e+02 Score=23.78 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=10.2
Q ss_pred cCCHHHHhhHHHHHH
Q psy6771 460 EEDPEKQRRWEEKEA 474 (493)
Q Consensus 460 ~lspeeQrK~eEKE~ 474 (493)
++|.++.+++++.-+
T Consensus 147 ~iseD~~k~~e~~iQ 161 (185)
T 1ise_A 147 EISEDDDRRSQDDVQ 161 (185)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHH
Confidence 568888888865443
Done!