Query psy6771
Match_columns 493
No_of_seqs 177 out of 259
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 17:59:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6771.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6771hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jjcb4 d.58.13.1 (B:682-785) 46.5 40 0.0029 26.0 8.2 64 329-403 27-91 (104)
2 d1dd5a_ d.67.3.1 (A:) Ribosome 21.4 1.5E+02 0.011 25.0 8.2 11 460-470 146-156 (184)
3 d1eh1a_ d.67.3.1 (A:) Ribosome 19.4 1.6E+02 0.012 24.8 8.0 11 460-470 148-158 (185)
4 d1wqga1 d.67.3.1 (A:2-184) Rib 15.4 2.5E+02 0.018 23.4 8.2 11 460-470 146-156 (183)
5 d1is1a_ d.67.3.1 (A:) Ribosome 14.7 2.6E+02 0.019 23.3 8.2 11 460-470 147-157 (185)
6 d1olla2 b.1.1.4 (A:96-188) Lig 13.6 61 0.0044 24.1 3.2 31 212-246 20-50 (93)
7 d1ek8a_ d.67.3.1 (A:) Ribosome 13.4 3.4E+02 0.025 22.5 8.6 11 460-470 147-157 (185)
8 d2fzta1 a.46.3.1 (A:1-78) Hypo 12.7 1E+02 0.0073 22.6 3.9 28 452-479 27-54 (78)
9 d1nkra2 b.1.1.4 (A:102-200) Ki 12.1 55 0.004 24.6 2.5 29 212-244 22-50 (99)
10 d1ge9a_ d.67.3.1 (A:) Ribosome 12.0 2.3E+02 0.017 23.6 7.0 51 422-475 111-161 (184)
No 1
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus thermophilus [TaxId: 274]}
Probab=46.46 E-value=40 Score=25.99 Aligned_cols=64 Identities=17% Similarity=0.361 Sum_probs=44.8
Q ss_pred HHHHHHHHh-cccCccEEEEecCCCCCCCcccccccCCCCCceEEEEEEEecCCCCCccchHHhHHHHHHHHHHHH
Q psy6771 329 SKFLTIVNK-FSDLIDYIHISDQFSGPKQTEETTLTKLPDVKKVILFNFNLQMGQLSIQDTIDEMKPLMQFVFYTL 403 (493)
Q Consensus 329 ~~li~~l~~-~~~~le~i~iTDQps~p~~~~e~~~~~~p~~~k~l~l~~~lP~~~~~~~d~~~~~~~Ll~lv~~li 403 (493)
..+++++.+ .+++++.+.+-|.+.|+.. |+.+|-+-+++.+-+...+..|- .+..++.-++..+
T Consensus 27 ~~i~~~i~~~~~~~l~~v~lfDvy~g~~~---------~~gkkS~~~r~~~q~~~kTLtd~--eV~~~~~~i~~~l 91 (104)
T d1jjcb4 27 GEVEALVREAAGPYLESLALFDLYQGPPL---------PEGHKSLAFHLRFRHPKRTLRDE--EVEEAVSRVAEAL 91 (104)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEEECSTTS---------CTTEEEEEEEEEECCSSSCCCHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccceEEeEEcCCCC---------CCCcEEEEEEEEEeCCCCCCCHH--HHHHHHHHHHHHH
Confidence 356777775 5589999999999988632 33678888888887777655443 4566666666544
No 2
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=21.38 E-value=1.5e+02 Score=24.97 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=6.5
Q ss_pred cCCHHHHhhHH
Q psy6771 460 EEDPEKQRRWE 470 (493)
Q Consensus 460 ~lspeeQrK~e 470 (493)
++|.++.++++
T Consensus 146 ~iseD~~k~~~ 156 (184)
T d1dd5a_ 146 LIPEDDAKRLE 156 (184)
T ss_dssp SSCHHHHHHHH
T ss_pred CCChhHHHHHH
Confidence 45666666664
No 3
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=19.38 E-value=1.6e+02 Score=24.77 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=6.3
Q ss_pred cCCHHHHhhHH
Q psy6771 460 EEDPEKQRRWE 470 (493)
Q Consensus 460 ~lspeeQrK~e 470 (493)
++|.++.++++
T Consensus 148 ~iseD~~k~~~ 158 (185)
T d1eh1a_ 148 HLSEDETKRAE 158 (185)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 35666666664
No 4
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.36 E-value=2.5e+02 Score=23.43 Aligned_cols=11 Identities=27% Similarity=0.284 Sum_probs=6.5
Q ss_pred cCCHHHHhhHH
Q psy6771 460 EEDPEKQRRWE 470 (493)
Q Consensus 460 ~lspeeQrK~e 470 (493)
++|.++.++++
T Consensus 146 ~iseD~~~~~~ 156 (183)
T d1wqga1 146 EAGEDEVGRAE 156 (183)
T ss_dssp SSCHHHHHHHH
T ss_pred CCChhHHHHHH
Confidence 35666666664
No 5
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=14.69 E-value=2.6e+02 Score=23.28 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=6.4
Q ss_pred cCCHHHHhhHH
Q psy6771 460 EEDPEKQRRWE 470 (493)
Q Consensus 460 ~lspeeQrK~e 470 (493)
++|.++.++++
T Consensus 147 ~iseD~~k~~~ 157 (185)
T d1is1a_ 147 EISEDEDRKAQ 157 (185)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHhHHHHHH
Confidence 45666666654
No 6
>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.61 E-value=61 Score=24.12 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=18.6
Q ss_pred cccccccCCCCCcccccccceeeeccceeeEEecC
Q psy6771 212 TFTLWCSGRDDGKQEIENSSLIKESENTFTLWCSG 246 (493)
Q Consensus 212 ~~~~wcsgr~~~~~~~~~~~likEs~~~F~~yATG 246 (493)
.-||||.|..... .-.|.||+.....-..++
T Consensus 20 ~VTL~C~~~~~~~----~f~L~Keg~~~~~~~~~~ 50 (93)
T d1olla2 20 KVTFYCRLDTATS----MFLLLKEGRSSHVQRGYG 50 (93)
T ss_dssp EEEEEEECSSSCS----EEEEEEESSSCEEEEEEC
T ss_pred cEEEEECCCCCCC----EEEEEECCCccceeecCC
Confidence 3589999987653 224666655555444444
No 7
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=13.36 E-value=3.4e+02 Score=22.50 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=6.0
Q ss_pred cCCHHHHhhHH
Q psy6771 460 EEDPEKQRRWE 470 (493)
Q Consensus 460 ~lspeeQrK~e 470 (493)
++|-++.++++
T Consensus 147 ~iseD~~k~~~ 157 (185)
T d1ek8a_ 147 EISEDDDRRSQ 157 (185)
T ss_dssp SCCHHHHHHHH
T ss_pred CCChhHHHHHH
Confidence 45555555554
No 8
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=12.69 E-value=1e+02 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=23.4
Q ss_pred HHHHHhhccCCHHHHhhHHHHHHHHHhh
Q psy6771 452 LEKEKIMQEEDPEKQRRWEEKEAKRQMK 479 (493)
Q Consensus 452 ~erer~l~~lspeeQrK~eEKE~kke~K 479 (493)
.+|+++|..|+.+..+-..||.++|...
T Consensus 27 ~kReell~~Lp~~~L~ei~EkD~kR~e~ 54 (78)
T d2fzta1 27 NKRKELMEGLPKDKLSEILEKDRKRLEI 54 (78)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcHHHHHHHHHHhHHHHHH
Confidence 4567788899999999999999988765
No 9
>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}
Probab=12.10 E-value=55 Score=24.57 Aligned_cols=29 Identities=28% Similarity=0.204 Sum_probs=17.7
Q ss_pred cccccccCCCCCcccccccceeeeccceeeEEe
Q psy6771 212 TFTLWCSGRDDGKQEIENSSLIKESENTFTLWC 244 (493)
Q Consensus 212 ~~~~wcsgr~~~~~~~~~~~likEs~~~F~~yA 244 (493)
.-||||.|..... .-.|.||+...+....
T Consensus 22 ~VTL~C~~~~~~~----~f~L~k~g~~~~~~~~ 50 (99)
T d1nkra2 22 NVTLSCSSRSSYD----MYHLSREGEAHERRLP 50 (99)
T ss_dssp EEEEEEEESSCCS----EEEEEETTCSSCEEEE
T ss_pred eEEEEECCCCCcc----EEEEEECCCccccEEE
Confidence 4589999888653 2346666555554443
No 10
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=12.02 E-value=2.3e+02 Score=23.64 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHhhHHHHHHH
Q psy6771 422 NRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAK 475 (493)
Q Consensus 422 ~R~~~~~~~~K~~~~~r~E~a~~kkeEkkk~erer~l~~lspeeQrK~eEKE~k 475 (493)
.|++......+..++.|.--+..|+.-.++.++.+ ++|.++.+++++.-++
T Consensus 111 ~R~~lvK~ak~~~E~aKv~iRniR~~~~~~lKk~k---~iseD~~k~~~~~iqk 161 (184)
T d1ge9a_ 111 RRRELVRLLHKITEEARVRVRNVRREAKEMIEELE---GISEDEKKRALERLQK 161 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Done!