RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6771
(493 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 2e-07
Identities = 84/535 (15%), Positives = 153/535 (28%), Gaps = 212/535 (39%)
Query: 5 QGPSLREFFSPTMKFKLKLSILLLLVTFLVSYGVHGQFNDQFKDDEFADFEEFEDPEEAL 64
S R P L LS L LV + Q ++ +F
Sbjct: 2 DAYSTR----P-----LTLSHGSLEHVLLVPTASFFIAS-QLQE-QFNK----------- 39
Query: 65 LKESLNVQQNVQETWEEEPVEAITEEDVMIEDEEDSDFEHFKDEEEFEGFKTAKPDPTSK 124
EP E +D E + E +F G+ ++ +P+
Sbjct: 40 --------------ILPEPTEGFAADD-----EPTTPAELV---GKFLGYVSSLVEPSKV 77
Query: 125 QEAPTITIQDIPMHLRSNWDSYYLELLMIAGLVAYIINFITGRNKNFKLATHWINTHRAL 184
+ + ++L + L + ++ G + I H AL
Sbjct: 78 GQ--------------------FDQVLNLC-LTEFENCYLEGND---------I--H-AL 104
Query: 185 LEDNFSLVGDDGKQEIENSSLIKESENTFT-LWCSGRDDGKQEIENSSLIKESE----NT 239
L+ ++ ++ LIK N T + R K+ NS+L +
Sbjct: 105 A---AKLLQENDTTLVKTKELIK---NYITARIMAKRPFDKKS--NSALFRAVGEGNAQL 156
Query: 240 FTLWCSGRSCCEGMLVELKLIKRQDL----VGLIAQLIRPSTDQLSMSFDLGKEDMDSFS 295
+ G+ + EL +DL L+ LI+ S + LS +L + +D+
Sbjct: 157 VAI-FGGQGNTDDYFEEL-----RDLYQTYHVLVGDLIKFSAETLS---ELIRTTLDAEK 207
Query: 296 LYC-----------PERKSGDKF------NLP----------------SGFNVMSEIAE- 321
++ P + + P GF E+
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-PGELRSY 266
Query: 322 -----------VSSSLI---DS--KFLTIVNKFSDLIDYIHISDQFSGPKQTEETTLTK- 364
V++ I DS F V K ++ +I + + P + ++ +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 365 -------------------LPDVKKVI-LFNFNLQMG-QLSIQDTIDEMKPLM----QFV 399
V+ + N +L G Q+ I L+ V
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI--------SLVNGAKNLV 378
Query: 400 -------FYTLDRVKRFRLSREAKSKADKNRHRV---EEA------FLKTT---H 435
Y L+ L R+AK+ + ++ R+ E FL H
Sbjct: 379 VSGPPQSLYGLNL----TL-RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 59/434 (13%), Positives = 124/434 (28%), Gaps = 126/434 (29%)
Query: 24 SILLLLVTFLVSYGVHGQFNDQFKDDEFADFEEFEDPEEALLKE-----SLNVQQNVQET 78
++L +L L + + + LLK L V NV
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--- 253
Query: 79 WEEEPVEA--------ITEEDVMIEDEEDSDFE-HFKDEEEFEGFKTAKPDPTSKQEAPT 129
+ A +T + D + H + + E +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--------TPDEVKS 305
Query: 130 I-------TIQDIPMHLRSNWDSYYLELLMIAGLVAYIINFITGRNKNFKLATHW----- 177
+ QD+P + + ++ + I + + N+K
Sbjct: 306 LLLKYLDCRPQDLPREVLT------TNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTI 358
Query: 178 ----INT-----HRALLEDNFSLVGDDGK----------------------QEIENSSLI 206
+N +R + + S+ ++ SL+
Sbjct: 359 IESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 207 KE--SENTFTLWCSGRDDGKQEIENSSLIKESENTFTLWCSGRSCCEGMLVE-LKLIKRQ 263
++ E+T ++ E L + EN + L +V+ + K
Sbjct: 418 EKQPKESTISI-----PSIYLE-----LKVKLENEYAL--------HRSIVDHYNIPKTF 459
Query: 264 DLVGLIAQLIRPSTDQLSMSFDLG--------KEDMDSFS-LYCPERKSGDKFNLPSGFN 314
D LI P DQ S +G E M F ++ + F
Sbjct: 460 DSDDLIP----PYLDQYFYSH-IGHHLKNIEHPERMTLFRMVF---------LDF--RF- 502
Query: 315 VMSEIAEVSSSLIDSKFLTIVNKFSDLIDYI-HISDQFSGPKQTEETTLTKLPDVKKVIL 373
+ +I S++ S +I+N L Y +I D ++ L LP +++ ++
Sbjct: 503 LEQKIRHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 374 FNFNLQMGQLSIQD 387
+ + ++++
Sbjct: 561 CSKYTDLLRIALMA 574
Score = 34.8 bits (79), Expect = 0.082
Identities = 65/453 (14%), Positives = 124/453 (27%), Gaps = 116/453 (25%)
Query: 90 EDVMIEDEEDSDFEHFKDEEEFEGFKTAKPDPTSK--------QEAPTITIQD-IPMHLR 140
++ +D +D EE + D S +Q + LR
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 141 SN----WDSYYLELLMIAGLVAYIINFITGRNKNF----KLATHWIN-------THRALL 185
N E + + +I R++ + A + ++ +ALL
Sbjct: 89 INYKFLMSPIKTEQRQPSMMT---RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 186 E----DNFSLVGDD--GKQEIENSSLIKESENTFTLWCSGRDDGKQEIENSSLIKESENT 239
E N + G GK + + + C K + + I
Sbjct: 146 ELRPAKNVLIDGVLGSGK-----TWVALDV-------CL---SYKVQCKMDFKI------ 184
Query: 240 FTLWCSGRSCCEGMLVELKLIKRQDLVGLIAQLIRPSTDQLSMSFDLGKEDM-DSFSLYC 298
F W + ++C E L Q L+ I +D S + L +
Sbjct: 185 F--WLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLL 238
Query: 299 PERKSGDKFNLPSGFNVMSEIAEVSSSLIDSKFLTIVNKFSD-----LI--DYIHISDQF 351
+ + V+ + ++K N F + L+ + ++D
Sbjct: 239 KSKP------YENCLLVLLNVQ-------NAK---AWNAF-NLSCKILLTTRFKQVTDFL 281
Query: 352 SGPKQTEET------TLTKLPDVKKVILFNFNLQMGQLSIQDTIDEMKPLMQFVFYTLDR 405
S T + TLT +VK ++L + + L + + P + R
Sbjct: 282 SAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIR 338
Query: 406 VKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEED--- 462
DK + E+ L L E R++ +
Sbjct: 339 DGLATWDNWKHVNCDK-LTTIIESSLN----------VLEPAEYRKMFDRLSVFPPSAHI 387
Query: 463 PEK--QRRWEEKEAKRQMKKKTPKMKQLKVKAL 493
P W + M + +L +L
Sbjct: 388 PTILLSLIWFDVIKSDVMV----VVNKLHKYSL 416
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.003
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 454 KEKIMQEEDPEKQRRWEEKEAKRQMKK---KTPKMKQLKVKA 492
+ + +E PE R+W E++ KR + ++ + KA
Sbjct: 76 QADRLTQE-PESIRKWREEQRKRLQELDAASKVMEQEWREKA 116
Score = 37.4 bits (86), Expect = 0.005
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 437 ARAEAAALRK---EEKRRLEKEKIMQEEDPEKQRRWEEKEAK------RQMKKKTPKMKQ 487
E ++RK E+++RL++ + ++ W EK K ++ ++ K K
Sbjct: 80 LTQEPESIRKWREEQRKRLQE---LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Score = 30.1 bits (67), Expect = 1.0
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 410 RLS-REAKSKADKNRHRVE-EAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEED 462
RL +A SK + R + + L+ + ++E K R +K Q +
Sbjct: 97 RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 27.4 bits (60), Expect = 8.3
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 20/83 (24%)
Query: 405 RVKRFRLSREAKSK-ADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQE--- 460
+ R E+ K ++ R R++E +AA+ E++ R + +K ++E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQEL----------DAASKVMEQEWREKAKKDLEEWNQ 125
Query: 461 ---EDPEKQR---RWEEKEAKRQ 477
E EK + R +K +Q
Sbjct: 126 RQSEQVEKNKINNRIADKAFYQQ 148
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 35.2 bits (80), Expect = 0.062
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 405 RVKRFRLSREAKS-KADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDP 463
R++R ++ ++++ KA K +E + A+A A + E R+E E + +
Sbjct: 687 RLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKL 746
Query: 464 EKQRRWEEKEA--KRQMKKKTPKMKQLKVKA 492
+ Q E EA +R K + ++ + +
Sbjct: 747 KAQALAIETEAELERVKKVREMELIYARAQL 777
Score = 32.9 bits (74), Expect = 0.25
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 404 DRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKE---EKRRLEKEKIMQE 460
D+ + + +E + K +RAEAA + E + +L+ + + E
Sbjct: 695 DQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754
Query: 461 EDPEKQRRWEEKEAKRQMKKKTPKMKQLKVKAL 493
+ E +R + +E + + +++ K + L
Sbjct: 755 TEAELERVKKVREMELIYARAQLELEVSKAQQL 787
Score = 31.7 bits (71), Expect = 0.70
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 410 RLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRW 469
RL +EA+ + ++ + + +EA RKE ++ K
Sbjct: 679 RLEQEARGRLERQKILDQ-----------SEAEKARKELLELEAMSMAVESTGNAKAEAE 727
Query: 470 EEKEAKRQMKKKTPKMKQLKVKAL 493
EA R + + +LK +AL
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQAL 751
Score = 30.9 bits (69), Expect = 1.1
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 413 REAKSKADKNRHRVEEAFLKTTHVARAEAAALRKE-EKRRLEKEKIMQEEDPEKQRRWEE 471
EA+S+A+ R E + L+ +A+A A+ E E R++K + M+ Q E
Sbjct: 724 AEAESRAEAARIEGEGSVLQAK--LKAQALAIETEAELERVKKVREMELIYARAQLELEV 781
Query: 472 KEAKRQMKKKTPKMKQLK 489
+A++ + K K++
Sbjct: 782 SKAQQLANVEAKKFKEMT 799
Score = 30.5 bits (68), Expect = 1.6
Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 9/117 (7%)
Query: 366 PDVKKVILFNFNLQMGQLSIQDTIDEMKPLMQFVFYTLDRVKRFRLSREAKSKADKNRHR 425
+ ++ +F F + + + + F +S + R
Sbjct: 596 ARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVF------PQNGLVVSSVDVQSVEPVDQR 649
Query: 426 VEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDP--EKQRRWEEKEAKRQMKK 480
+A ++ +A E +E + E +++ QE E+Q+ ++ EA++ K+
Sbjct: 650 TRDALQRSVQLA-IEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKE 705
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 34.7 bits (80), Expect = 0.071
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 407 KRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKI---MQEEDP 463
K R + V +A+ E L+ E + +K+ ++ +
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 464 EKQRRWEEKEAKRQMKKKTPKMKQLKVK 491
+ QR+ +E+ ++ K KM L++
Sbjct: 932 QLQRKIDEQN--KEYKSLLEKMNNLEIT 957
Score = 29.7 bits (67), Expect = 2.6
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 425 RVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAKRQMKK 480
R + + H + +R R + Q + AKR++KK
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRT--LKAIVYLQCCYRRMMAKRELKK 908
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 33.3 bits (76), Expect = 0.22
Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 404 DRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKE---KIMQE 460
++ + E ++A++ R R+ + + A + +EE+R + + K MQ+
Sbjct: 896 LLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ 955
Query: 461 EDPEKQRRWEEKEAKRQMKKKTPKMKQLKVKAL 493
+ + + + EE+EA RQ + K+K +
Sbjct: 956 QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 32.1 bits (72), Expect = 0.23
Identities = 9/80 (11%), Positives = 28/80 (35%)
Query: 405 RVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPE 464
+ + ++R + + +R + +A K++K ++K +
Sbjct: 74 KKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQG 133
Query: 465 KQRRWEEKEAKRQMKKKTPK 484
K + +K ++ K+
Sbjct: 134 KDVKAAKKAETKKTKQPVGA 153
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 30.6 bits (68), Expect = 0.83
Identities = 9/51 (17%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 443 ALRKEEKRRLEKEKIMQE-------EDPEKQRRWEEKEAKRQMKKKTPKMK 486
L + +R + + ++QE E+ + R+ + +EA ++ +++ P+ +
Sbjct: 110 LLNRF-RREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQAR 159
>3ubr_A Cytochrome C-552; DECA-heme, electron transfer, redox, CYMA,
oxidoreductase; HET: HEC; 2.59A {Shewanella oneidensis}
Length = 439
Score = 29.8 bits (66), Expect = 2.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 437 ARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKEAK 475
A+A+A EK EKE ++ P+ +++EA
Sbjct: 400 AKAQAVLGMDMEKMNAEKEAFKKDMLPKWDAEAKKREAT 438
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.8
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 7/30 (23%)
Query: 106 KDE-EEFEG-FKTAKPDPTSKQEAPTITIQ 133
K ++ + K D AP + I+
Sbjct: 19 KQALKKLQASLKLYADD-----SAPALAIK 43
Score = 27.2 bits (59), Expect = 8.1
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 8/26 (30%)
Query: 475 KRQMKKKTPKMK--------QLKVKA 492
K+ +KK +K L +KA
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex;
HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP:
d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Length = 356
Score = 29.0 bits (65), Expect = 3.1
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 432 KTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQR-------RWEEKEAKRQMKKKTPK 484
+ +A EA E + + + + + R+E+ A R +K+KT
Sbjct: 39 RDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLI 98
Query: 485 MKQLKVKAL 493
K+KA+
Sbjct: 99 NYMSKIKAI 107
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_L
Length = 199
Score = 28.5 bits (63), Expect = 3.4
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 416 KSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEK 465
+A + E AF +T +AR+E EKR EK + E + +K
Sbjct: 153 DVEARAVQDNGESAF-RTLRLARSEKKFRGIREKRAREKAE--AEAEKKK 199
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 28.7 bits (64), Expect = 4.2
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 34 VSYGVHGQFNDQFKDDEFADFEEFEDPEEALLKESLNVQQNVQETWEEEPVEAITEEDVM 93
V + D + DPEE ++ + + +E EEE E +TEE
Sbjct: 181 VLRLRGALVDRTQPWSIMPDLYFYRDPEEV--EQQVAEEATTEEAGEEEAKEEVTEEQAE 238
Query: 94 IED--EEDSD 101
+ EE++D
Sbjct: 239 ATEWAEENAD 248
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf,
protein binding/transcription complex; NMR {Homo
sapiens} SCOP: a.48.4.1
Length = 127
Score = 27.8 bits (61), Expect = 4.6
Identities = 11/72 (15%), Positives = 30/72 (41%)
Query: 397 QFVFYTLDRVKRFRLSREAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEK 456
+ TL +++RF++S+ K+ ++ + FL + + ++R +E
Sbjct: 50 TEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNKSLAEQRQHEEA 109
Query: 457 IMQEEDPEKQRR 468
++ +K
Sbjct: 110 NKTKDQGKKGPN 121
>2han_B Ecdysone receptor; transcription regulation, transcription factor,
DNA-binding, nuclear protein, nuclear receptor, zinc
finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
PDB: 1r0o_B 1r0n_B
Length = 119
Score = 27.5 bits (61), Expect = 5.0
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 454 KEKIMQEEDPEKQRRWEEKEAKRQMKKKTPKMKQ 487
E ++ E +RR ++ + ++ +P +
Sbjct: 78 PECVVPENQCAMKRREKKAQKEKDKMTTSPSSQH 111
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 191
Score = 27.9 bits (62), Expect = 6.0
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 465 KQRRWEEKEAKRQMKKKTPKMKQLKVK 491
+ +RWE K+ K PK+ + VK
Sbjct: 47 RIKRWERKDCK---PNSLPKLHKRHVK 70
>3rko_N NADH-quinone oxidoreductase subunit N; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 485
Score = 28.5 bits (64), Expect = 6.4
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 9 LREFFSPTMKFKLKLSILLLLVTFLVSYGVHGQ----FNDQFKDDEFADF 54
L + LS++ L + + V + D FA
Sbjct: 26 LSIAWRRNHFLNATLSVIGLNAALVSLWFVGQAGAMDVTPLMRVDGFAML 75
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 28.2 bits (63), Expect = 6.8
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 47 KDDEFADFEEFEDPEEALLKESLNVQQNVQETWEEEPVEAI----------TEEDVMIED 96
DD+ + E+ EEAL +E + E I + E+ + +
Sbjct: 3 SDDDLLESEDDYGSEEALSEE---NVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLE 59
Query: 97 EEDSDFEHFKDEEEF 111
+ D + K+ EF
Sbjct: 60 KTVPDLNNCKENYEF 74
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA
thioesterase 7, serine esterase, protein structure,
domain duplication, ACOT7, macrophage; HET: COA; 1.78A
{Mus musculus}
Length = 151
Score = 26.9 bits (60), Expect = 9.1
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 414 EAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEKE 473
+++ + +A L +V + + E + + QE++ E ++R+E ++
Sbjct: 89 MSENILTGTKKLTNKATL--WYVPLSLKNVDKVLEVPPIVYLR--QEQEEEGRKRYEAQK 144
Query: 474 AKRQMKK 480
+R K
Sbjct: 145 LERMETK 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.374
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,469,262
Number of extensions: 463119
Number of successful extensions: 1337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1264
Number of HSP's successfully gapped: 93
Length of query: 493
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 396
Effective length of database: 3,993,456
Effective search space: 1581408576
Effective search space used: 1581408576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.2 bits)