RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6771
         (493 letters)



>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli
           [TaxId: 562]}
          Length = 207

 Score = 29.8 bits (66), Expect = 0.53
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 8/172 (4%)

Query: 52  ADFEEFEDPEEALLKESLNVQQNVQETWEEEPVEAITEEDVMIEDEEDSDFEHFKDEEEF 111
             F  + + EEA         +++   W      A         + +  + +       +
Sbjct: 19  PPFASWRNSEEARTDRPSQQLRSLNGEWRFAWFPAPEAVPESWLECDLPEADTVVVPSNW 78

Query: 112 EGFKTAKPDPTSKQEAPTITIQDIPMHLRSNWDSYYLELLMIAGLVAYIINFITGRNKNF 171
           +      P  T+     T+    +P    +   S    +               G N  F
Sbjct: 79  QMHGYDAPIYTNVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAF 138

Query: 172 KLATHWINTHRALLEDNFSLVGDDGKQEIENSSLIKESENTFTLWCSGRDDG 223
            L   W N        +  L       E + S+ ++  EN   +      DG
Sbjct: 139 HL---WCNGRWVGYGQDSRL-----PSEFDLSAFLRAGENRLAVMVLRWSDG 182


>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 138

 Score = 27.9 bits (62), Expect = 1.5
 Identities = 6/79 (7%), Positives = 21/79 (26%)

Query: 413 REAKSKADKNRHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEK 472
           +   ++  +     E                 +  E+     +   ++   + +   E +
Sbjct: 50  KLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENR 109

Query: 473 EAKRQMKKKTPKMKQLKVK 491
           EA      +  + K    +
Sbjct: 110 EAHLAAMLERLQEKDKHAE 128


>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional
           dehydrogenase/ferrochelatase Met8p, dimerisation and
           C-terminal domains {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 123

 Score = 26.7 bits (59), Expect = 3.0
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 423 RHRVEEAFLKTTHVARAEAAALRKEEKRRLEKEKIMQEEDPEKQRRWEEK 472
           R  +   F +   +A  +A     E +R + +     ++D + +  W  +
Sbjct: 28  RDEIRNLFTQMGDLALEDAVVKLGELRRGI-RLLAPDDKDVKYRMDWARR 76


>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 155

 Score = 26.5 bits (58), Expect = 5.5
 Identities = 6/25 (24%), Positives = 15/25 (60%)

Query: 461 EDPEKQRRWEEKEAKRQMKKKTPKM 485
           +  E++R +E   A+++ +KK   +
Sbjct: 131 QTEEEKRLYETAPARKENRKKRAAL 155


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,831,987
Number of extensions: 89841
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 23
Length of query: 493
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 404
Effective length of database: 1,185,626
Effective search space: 478992904
Effective search space used: 478992904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)