BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6772
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 120 bits (302), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+EKPDV Y+D+GG+DMQKQEIREAVELPL DLY+QIGIDPPRGVLLYGPPG GKTML
Sbjct: 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223
Query: 70 KAVAHHT 76
KAVA+ T
Sbjct: 224 KAVANST 230
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 60/74 (81%)
Query: 4 CKPTKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGC 63
K + DE+P+V+Y DIGG++ Q QEIRE VELPL H +L++++GI+PP+G+LLYGPPG
Sbjct: 3 AKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGT 62
Query: 64 GKTMLAKAVAHHTT 77
GKT+LAKAVA T
Sbjct: 63 GKTLLAKAVATETN 76
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 58/71 (81%)
Query: 8 KNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTM 67
K D+ P YSDIGG++ Q QEI+E+VELPLTH +LY+++GI PP+GV+LYG PG GKT+
Sbjct: 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL 231
Query: 68 LAKAVAHHTTV 78
LAKAVA+ T+
Sbjct: 232 LAKAVANQTSA 242
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 52/67 (77%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+EKPDV YSD+GG Q +++RE VELPL + + +GIDPP+G+LLYGPPG GKT+ A
Sbjct: 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260
Query: 70 KAVAHHT 76
+AVA+ T
Sbjct: 261 RAVANRT 267
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/64 (56%), Positives = 50/64 (78%)
Query: 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAV 72
PD Y +GG+ Q +EI+E +ELP+ H +L++ +GI P+GV+LYGPPG GKT+LA+AV
Sbjct: 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAV 202
Query: 73 AHHT 76
AHHT
Sbjct: 203 AHHT 206
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 84.0 bits (206), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/63 (60%), Positives = 48/63 (76%)
Query: 14 DVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+V Y DIGG Q +I+E VELPL H L+K IG+ PPRG+LLYGPPG GKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 74 HHT 76
+ T
Sbjct: 260 NET 262
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 48/64 (75%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E P V + DIGG++ K+E++E V+ P+ H D + + G+ P +GVL YGPPGCGKT+LAK
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 71 AVAH 74
A+A+
Sbjct: 530 AIAN 533
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 83.6 bits (205), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/63 (60%), Positives = 48/63 (76%)
Query: 14 DVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+V Y DIGG Q +I+E VELPL H L+K IG+ PPRG+LLYGPPG GKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 74 HHT 76
+ T
Sbjct: 260 NET 262
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 83.6 bits (205), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/63 (60%), Positives = 48/63 (76%)
Query: 14 DVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+V Y DIGG Q +I+E VELPL H L+K IG+ PPRG+LLYGPPG GKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 74 HHT 76
+ T
Sbjct: 260 NET 262
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 83.6 bits (205), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/63 (60%), Positives = 48/63 (76%)
Query: 14 DVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+V Y DIGG Q +I+E VELPL H L+K IG+ PPRG+LLYGPPG GKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 74 HHT 76
+ T
Sbjct: 260 NET 262
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 83.2 bits (204), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/63 (58%), Positives = 48/63 (76%)
Query: 14 DVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+V Y D+GG Q +I+E VELPL H L+K IG+ PPRG+LLYGPPG GKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 74 HHT 76
+ T
Sbjct: 260 NET 262
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 48/64 (75%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E P V + DIGG++ K+E++E V+ P+ H D + + G+ P +GVL YGPPGCGKT+LAK
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 71 AVAH 74
A+A+
Sbjct: 530 AIAN 533
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 83.2 bits (204), Expect = 4e-17, Method: Composition-based stats.
Identities = 37/63 (58%), Positives = 48/63 (76%)
Query: 14 DVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+V Y D+GG Q +I+E VELPL H L+K IG+ PPRG+LLYGPPG GKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 74 HHT 76
+ T
Sbjct: 260 NET 262
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 82.8 bits (203), Expect = 4e-17, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 50/72 (69%)
Query: 5 KPTKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCG 64
K + DEKP YSD+GG+D Q +E+ EA+ LP+ D +K +GI P+G L+YGPPG G
Sbjct: 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTG 227
Query: 65 KTMLAKAVAHHT 76
KT+LA+A A T
Sbjct: 228 KTLLARACAAQT 239
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 51/63 (80%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E+ ++ + IGG+ Q +E+RE +ELPL + ++++++GI PP+GVLLYGPPG GKT+LAK
Sbjct: 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233
Query: 71 AVA 73
AVA
Sbjct: 234 AVA 236
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 48/64 (75%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E P V + DIGG++ K+E++E V+ P+ H D + + G+ P +GVL YGPPGCGKT+LAK
Sbjct: 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67
Query: 71 AVAH 74
A+A+
Sbjct: 68 AIAN 71
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 47/64 (73%)
Query: 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAV 72
P+V ++DIG ++ ++E+ A+ P+ + D +K +G+ P GVLL GPPGCGKT+LAKAV
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 73 AHHT 76
A+ +
Sbjct: 65 ANES 68
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 65.9 bits (159), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
N EKP+V++ D+ G + K+E+ E V+ L + + Y +G P+GVLL GPPG GKT+L
Sbjct: 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLL 60
Query: 69 AKAVA 73
AKAVA
Sbjct: 61 AKAVA 65
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 63.5 bits (153), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKP+V++ D+ G++ K+ ++EAV LP+ L+K P G+LLYGPPG GK+ LAK
Sbjct: 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAK 102
Query: 71 AVA 73
AVA
Sbjct: 103 AVA 105
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
Length = 340
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKP+V++ D+ G++ K+ ++EAV LP+ L+K P G+LLYGPPG GK+ LAK
Sbjct: 29 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAK 87
Query: 71 AVA 73
AVA
Sbjct: 88 AVA 90
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKP+V++ D+ G++ K+ ++EAV LP+ L+K P G+LLYGPPG GK+ LAK
Sbjct: 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAK 69
Query: 71 AVA 73
AVA
Sbjct: 70 AVA 72
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKP+V++ D+ G++ K+ ++EAV LP+ L+K P G+LLYGPPG GK+ LAK
Sbjct: 20 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAK 78
Query: 71 AVA 73
AVA
Sbjct: 79 AVA 81
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 62.0 bits (149), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E+P+V++SD+ G++ K+ ++EAV LP+ L+ P RG+LL+GPPG GK+ LAK
Sbjct: 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAK 63
Query: 71 AVA 73
AVA
Sbjct: 64 AVA 66
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 62.0 bits (149), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E+P+V++SD+ G++ K+ ++EAV LP+ L+ P RG+LL+GPPG GK+ LAK
Sbjct: 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAK 185
Query: 71 AVA 73
AVA
Sbjct: 186 AVA 188
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 15 VQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAH 74
V + D+ GM K E+RE V+ L + + Q+G P+G LL GPPGCGKT+LAKAVA
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 75 HTTV 78
V
Sbjct: 62 EAQV 65
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
D V++ DI G D+ KQ ++E V LP +L+ + P RG+LL+GPPG GKTMLA
Sbjct: 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLA 165
Query: 70 KAVA 73
KAVA
Sbjct: 166 KAVA 169
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 58.5 bits (140), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 15 VQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVA 73
V+++DI G D+ KQ ++E V LP +L+ + P +G+LL+GPPG GKT+LA+AVA
Sbjct: 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVA 75
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
D P V + DI G++ K I+E V P+ D++ + PP+G+LL+GPPG GKT++
Sbjct: 76 DHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIG 134
Query: 70 KAVAHHT 76
K +A +
Sbjct: 135 KCIASQS 141
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 5 KPTKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCG 64
KP+ N V + D+GG + +E++E VE L + +IG P+G+LL GPPG G
Sbjct: 6 KPSGNKR---VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTG 61
Query: 65 KTMLAKAVAHHTTV 78
KT+LA+AVA V
Sbjct: 62 KTLLARAVAGEANV 75
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 5 KPTKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCG 64
KP+ N V + D+GG + +E++E VE L + +IG P+G+LL GPPG G
Sbjct: 6 KPSGNKR---VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTG 61
Query: 65 KTMLAKAVAHHTTV 78
T+LA+AVA V
Sbjct: 62 ATLLARAVAGEANV 75
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+++ ++D+ G D K+E+ E VE L ++++G P+GVL+ GPPG GKT+LA
Sbjct: 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62
Query: 70 KAVAHHTTV 78
KA+A V
Sbjct: 63 KAIAGEAKV 71
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E P V + D+ G + K+E++E VE L + + ++G P+GVLL GPPG GKT LA+
Sbjct: 24 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82
Query: 71 AVAHHTTV 78
AVA V
Sbjct: 83 AVAGEARV 90
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E P V + D+ G + K+E++E VE L + + ++G P+GVLL GPPG GKT LA+
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 71 AVAHHTTV 78
AVA V
Sbjct: 92 AVAGEARV 99
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E P V + D+ G + K+E++E VE L + + ++G P+GVLL GPPG GKT LA+
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 71 AVAHHTTV 78
AVA V
Sbjct: 92 AVAGEARV 99
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp
From Thermus Thermophilus
Length = 254
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E P V + D+ G + K+E++E VE L + + ++G P+GVLL GPPG GKT LA+
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67
Query: 71 AVAHHTTV 78
AVA V
Sbjct: 68 AVAGEARV 75
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78
+P +LL+GPPG GKT LA +AH V
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGV 64
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78
+P +LL+GPPG GKT LA +AH V
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGV 64
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78
+P +LL+GPPG GKT LA +AH V
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGV 64
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
R VLL GPPG GKT LA A+A
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQE 86
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
Truncated Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
Truncated Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
Truncated Domains Ii
Length = 367
Score = 33.1 bits (74), Expect = 0.044, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAH 74
R VLL GPPG GKT LA A+A
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQ 99
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 32.7 bits (73), Expect = 0.057, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 18 SDIGGMDMQKQEI-REAVELP----LTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
S+I + ++ E+ R + +P + H ++ + ++ RG++L GPPG GKTM+
Sbjct: 1229 SEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 32.7 bits (73), Expect = 0.057, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 18 SDIGGMDMQKQEI-REAVELP----LTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
S+I + ++ E+ R + +P + H ++ + ++ RG++L GPPG GKTM+
Sbjct: 1010 SEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.0 bits (71), Expect = 0.094, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAH 74
R +LYGPPG GKT A VA
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQ 99
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
++L+GPPG GKT LA+ +A +
Sbjct: 53 MILWGPPGTGKTTLAEVIARY 73
>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto
Reductase Akr14a1 With Nadp And Citrate
pdb|4AUB|B Chain B, The Complex Structure Of The Bacterial Aldo-Keto
Reductase Akr14a1 With Nadp And Citrate
pdb|4AUB|C Chain C, The Complex Structure Of The Bacterial Aldo-Keto
Reductase Akr14a1 With Nadp And Citrate
pdb|4AUB|D Chain D, The Complex Structure Of The Bacterial Aldo-Keto
Reductase Akr14a1 With Nadp And Citrate
pdb|4AUB|E Chain E, The Complex Structure Of The Bacterial Aldo-Keto
Reductase Akr14a1 With Nadp And Citrate
pdb|4AUB|F Chain F, The Complex Structure Of The Bacterial Aldo-Keto
Reductase Akr14a1 With Nadp And Citrate
pdb|4AUB|G Chain G, The Complex Structure Of The Bacterial Aldo-Keto
Reductase Akr14a1 With Nadp And Citrate
pdb|4AUB|H Chain H, The Complex Structure Of The Bacterial Aldo-Keto
Reductase Akr14a1 With Nadp And Citrate
Length = 366
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 17 YSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRG 54
+ + ++ Q+ +R+A +L +THFDL G PP G
Sbjct: 56 FGHVNALESQRAILRKAFDLGITHFDLANNYG--PPPG 91
>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|B Chain B, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|C Chain C, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|D Chain D, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|E Chain E, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|F Chain F, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|G Chain G, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|H Chain H, Crystal Structure Of Yghz From E. Coli
pdb|4AST|A Chain A, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|B Chain B, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|C Chain C, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|D Chain D, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|E Chain E, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|F Chain F, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|G Chain G, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|H Chain H, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
Length = 346
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 17 YSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRG 54
+ + ++ Q+ +R+A +L +THFDL G PP G
Sbjct: 36 FGHVNALESQRAILRKAFDLGITHFDLANNYG--PPPG 71
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAH 74
R VLL G PG GK+ML +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMAE 82
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
VLL GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
VLL GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
VLL GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
VLL GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
VLL GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIA 72
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTTV 78
+LL GP G GKT++A+ +A H +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDI 98
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 57 LYGPPGCGKTMLAKAVA 73
L GPPG GKT LAK++A
Sbjct: 113 LAGPPGVGKTSLAKSIA 129
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 52 PRGVLLYGPPGCGK-TMLAKAVAHHTTVL 79
PR V+L GP G GK T+L K H+++
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIF 32
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76
++ P LL G PG GKT L A+ T
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEET 57
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
VLL GPPG G+T LA +A
Sbjct: 54 VLLAGPPGLGRTTLAHIIA 72
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+LL GP G GKT+LA+ +A
Sbjct: 54 ILLIGPTGSGKTLLAETLAR 73
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+LL GP G GKT+LA+ +A
Sbjct: 54 ILLIGPTGSGKTLLAETLAR 73
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHHTT 77
P VLL GPP GKT LA +A +
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESN 88
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
Length = 310
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVA 73
P+ +L+ GP G GKT +A+ +A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLA 71
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 15 VQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAH 74
+ SDI + + E A+ D +Q +G+ LYG G GK+ L A+AH
Sbjct: 121 IHLSDIDVNNASRMEAFSAI------LDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174
Query: 75 HTT 77
+
Sbjct: 175 ELS 177
>pdb|1AGX|A Chain A, Refined Crystal Structure Of Acinetobacter
Glutaminasificans Glutaminase-Asparaginase
Length = 331
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 8 KNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQI 47
+N E+PD +Y I D+ Q+ R + L LT + K+I
Sbjct: 285 RNAEQPDDKYGWIAAHDLNPQKARLLMALALTKTNDAKEI 324
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHHTT 77
P VLL GPP GKT LA +A +
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESN 89
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
Length = 444
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVA 73
P+ +L+ GP G GKT +A+ +A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLA 71
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 41 FDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79
F LYKQ+ + P +++ PP + ++ H T L
Sbjct: 36 FSLYKQLVLKAPDKNVIFSPPSISTALAFLSLGAHNTTL 74
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVA 73
P+ +L+ GP G GKT +A+ +A
Sbjct: 49 PKNILMIGPTGVGKTEIARRLA 70
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVA 73
P+ +L+ GP G GKT +A+ +A
Sbjct: 56 PKNILMIGPTGVGKTEIARRLA 77
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVA 73
P+ +L+ GP G GKT +A+ +A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLA 71
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 56 LLYGPPGCGKTMLAKAVAHHTT 77
L+ GPPG GKT+ + + +H +
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLS 400
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 48 GIDPPRGV--LLYGPPGCGKTMLAKAVA 73
++ P+G+ L+ G PG GKT +A+ +A
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIA 31
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78
K I +D G V+ GP GCGK+ L + +A T+
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78
K I +D G V+ GP GCGK+ L + +A T+
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+ L+GP GKT +A+A+AH
Sbjct: 107 IWLFGPATTGKTNIAEAIAH 126
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+ L+GP GKT +A+A+AH
Sbjct: 108 IWLFGPATTGKTNIAEAIAH 127
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78
K I +D G V+ GP GCGK+ L + +A T+
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 52 PRGVLLYGPPGCGKTML-AKAVAHHT 76
P V +YG GCGK++L A+AV H+
Sbjct: 154 PGWVTIYGMAGCGKSVLAAEAVRDHS 179
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 52 PRGVLLYGPPGCGKTML-AKAVAHHT 76
P V +YG GCGK++L A+AV H+
Sbjct: 147 PGWVTIYGMAGCGKSVLAAEAVRDHS 172
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
+L YGPPG GKT A+A
Sbjct: 49 LLFYGPPGTGKTSTIVALA 67
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 56 LLYGPPGCGKTMLAKAVAHH 75
L+ GPPG GKT+ + + +H
Sbjct: 375 LIQGPPGTGKTVTSATIVYH 394
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 50 DPPRGV---LLYGPPGCGKTMLAKAVA 73
DP R + + GP G GKT LA+A+A
Sbjct: 516 DPKRPIGSFIFLGPTGVGKTELARALA 542
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 56 LLYGPPGCGKTMLAKAVAHH 75
L+ GPPG GKT+ + + +H
Sbjct: 199 LIQGPPGTGKTVTSATIVYH 218
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 56 LLYGPPGCGKTMLAKAVAHH 75
L+ GPPG GKT+ + + +H
Sbjct: 198 LIQGPPGTGKTVTSATIVYH 217
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 54 GVLLYGPPGCGKTMLAKAVAHHT 76
+LL G PG GKT L K +A +
Sbjct: 6 NILLTGTPGVGKTTLGKELASKS 28
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVA 73
P+ +L GP G GKT +A+ +A
Sbjct: 50 PKNILXIGPTGVGKTEIARRLA 71
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 50 DPPRGV---LLYGPPGCGKTMLAKAVA 73
DP R + L GP G GKT LAK +A
Sbjct: 583 DPNRPIGSFLFLGPTGVGKTELAKTLA 609
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 50 DPPRGV---LLYGPPGCGKTMLAKAVA 73
DP R + L GP G GKT LAK +A
Sbjct: 42 DPNRPIGSFLFLGPTGVGKTELAKTLA 68
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 50 DPPRGV---LLYGPPGCGKTMLAKAVA 73
DP R + L GP G GKT LAK +A
Sbjct: 39 DPNRPIGSFLFLGPTGVGKTELAKTLA 65
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAH 74
R VL+ G PG GKT +A +A
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQ 92
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 54 GVLLYGPPGCGKTMLAKAVAHHT 76
+LL G PG GKT L K +A +
Sbjct: 13 NILLTGTPGVGKTTLGKELASKS 35
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 53 RGVLLYGPPGCGKTM 67
R ++L GPPG GKTM
Sbjct: 1305 RPLILCGPPGSGKTM 1319
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 53 RGVLLYGPPGCGKTM 67
R ++L GPPG GKTM
Sbjct: 1305 RPLILCGPPGSGKTM 1319
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 59 GPPGCGKTMLAKAVAH 74
GP GCGK+ L +A+A+
Sbjct: 468 GPNGCGKSTLXRAIAN 483
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 59 GPPGCGKTMLAKAVAH 74
GP GCGK+ L +A+A+
Sbjct: 462 GPNGCGKSTLXRAIAN 477
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 56 LLYGPPGCGKT-----MLAKAVAHHTTVLC 80
+++GPPG GKT ++ +AV VLC
Sbjct: 209 IIHGPPGTGKTTTVVEIILQAVKQGLKVLC 238
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 56 LLYGPPGCGKT-----MLAKAVAHHTTVLC 80
+++GPPG GKT ++ +AV VLC
Sbjct: 209 IIHGPPGTGKTTTVVEIILQAVKQGLKVLC 238
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 55 VLLYGP-PGCGKTMLAKAVAH 74
++L+ P PG GKT +AKA+ H
Sbjct: 50 IILHSPSPGTGKTTVAKALCH 70
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 59 GPPGCGKTMLAKAVAH 74
GP GCGK+ L +A+A+
Sbjct: 468 GPNGCGKSTLMRAIAN 483
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHHT 76
+P R V++ G G GKT +A VA T
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 47 IGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+ +DP + + G GCGKT L + +A
Sbjct: 25 LSLDPGEILFIIGASGCGKTTLLRCLA 51
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAV 72
+ P LLYG G GKT +A+ V
Sbjct: 42 EKPSNALLYGLTGTGKTAVARLV 64
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
++L GP GCGKT + +A
Sbjct: 32 MILLGPSGCGKTTTLRMIA 50
>pdb|2PW9|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase
Accessory Protein From Desulfotalea Psychrophila
pdb|2PW9|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase
Accessory Protein From Desulfotalea Psychrophila
pdb|2PW9|C Chain C, Crystal Structure Of A Putative Formate Dehydrogenase
Accessory Protein From Desulfotalea Psychrophila
pdb|2PW9|D Chain D, Crystal Structure Of A Putative Formate Dehydrogenase
Accessory Protein From Desulfotalea Psychrophila
Length = 268
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 22 GMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKT 66
G + +EIRE + P +Y + + PR V++ GCG T
Sbjct: 68 GYIKKAEEIREILVCPQGRISVYADVENEEPREVII--TSGCGGT 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,833,945
Number of Sequences: 62578
Number of extensions: 101623
Number of successful extensions: 498
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 116
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)