BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6772
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4
PE=1 SV=1
Length = 418
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 68/69 (98%)
Query: 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
+D+KPDV Y+DIGGMD+QKQE+REAVELPLTHF+LYKQIGIDPPRGVL+YGPPGCGKTML
Sbjct: 156 SDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTML 215
Query: 69 AKAVAHHTT 77
AKAVAHHTT
Sbjct: 216 AKAVAHHTT 224
>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1
SV=2
Length = 418
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 68/69 (98%)
Query: 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
+D+KPDV Y+DIGGMD+QKQE+REAVELPLTHF+LYKQIGIDPPRGVL+YGPPGCGKTML
Sbjct: 156 SDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTML 215
Query: 69 AKAVAHHTT 77
AKAVAHHTT
Sbjct: 216 AKAVAHHTT 224
>sp|Q4R7L3|PRS6B_MACFA 26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4
PE=2 SV=1
Length = 418
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 68/69 (98%)
Query: 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
+D+KPDV Y+DIGGMD+QKQE+REAVELPLTHF+LYKQIGIDPPRGVL+YGPPGCGKTML
Sbjct: 156 SDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTML 215
Query: 69 AKAVAHHTT 77
AKAVAHHTT
Sbjct: 216 AKAVAHHTT 224
>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1
SV=2
Length = 418
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 68/69 (98%)
Query: 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
+D+KPDV Y+DIGGMD+QKQE+REAVELPLTHF+LYKQIGIDPPRGVL+YGPPGCGKTML
Sbjct: 156 SDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTML 215
Query: 69 AKAVAHHTT 77
AKAVAHHTT
Sbjct: 216 AKAVAHHTT 224
>sp|Q3T030|PRS6B_BOVIN 26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1
Length = 418
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 68/69 (98%)
Query: 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
+D+KPDV Y+DIGGMD+QKQE+REAVELPLTHF+LYKQIGIDPPRGVL+YGPPGCGKTML
Sbjct: 156 SDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTML 215
Query: 69 AKAVAHHTT 77
AKAVAHHTT
Sbjct: 216 AKAVAHHTT 224
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
Length = 415
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/68 (89%), Positives = 65/68 (95%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
DEKPDVQYSDIGGMD QKQEIREAVELPLTH +LY+QIGI+PPRGVL+YGPPGCGKTMLA
Sbjct: 154 DEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLA 213
Query: 70 KAVAHHTT 77
AVAHHTT
Sbjct: 214 NAVAHHTT 221
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/67 (89%), Positives = 63/67 (94%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKPDV Y+DIGG D+QKQEIREAVELPLTH +LYKQIGIDPPRGVLLYGPPG GKTMLAK
Sbjct: 153 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 212
Query: 71 AVAHHTT 77
AVAHHTT
Sbjct: 213 AVAHHTT 219
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 128 bits (322), Expect = 9e-30, Method: Composition-based stats.
Identities = 58/68 (85%), Positives = 63/68 (92%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+EKPDV Y+D+GG+DMQKQEIREAVELPLT FDLYKQIGIDPPRGVLLYGPPG GKTML
Sbjct: 158 NEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLV 217
Query: 70 KAVAHHTT 77
KAVA+ TT
Sbjct: 218 KAVANSTT 225
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 127 bits (319), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/67 (88%), Positives = 63/67 (94%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKPDV Y+DIGG D+QKQEIREAVELPLTH +LYKQIGIDPPRGVLLYGPPG GKTMLAK
Sbjct: 148 EKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 207
Query: 71 AVAHHTT 77
AVA+HTT
Sbjct: 208 AVANHTT 214
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/67 (88%), Positives = 63/67 (94%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKPDV Y+DIGG D+QKQEIREAVELPLTH +LYKQIGIDPPRGVLLYGPPG GKTMLAK
Sbjct: 154 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 213
Query: 71 AVAHHTT 77
AVA+HTT
Sbjct: 214 AVANHTT 220
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 126 bits (317), Expect = 3e-29, Method: Composition-based stats.
Identities = 58/68 (85%), Positives = 62/68 (91%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
DEKP YSDIGG D+QKQE+REAVELPLTH +LYKQIGIDPPRGVLLYGPPG GKTMLA
Sbjct: 142 DEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLA 201
Query: 70 KAVAHHTT 77
KAVAHHT+
Sbjct: 202 KAVAHHTS 209
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 120 bits (302), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/69 (76%), Positives = 62/69 (89%)
Query: 8 KNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTM 67
+ DE+PDV Y+D+GG+D+QKQE+REAVELPLT DLY+QIGIDPPRGVLLYGPPG GKTM
Sbjct: 124 RPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTM 183
Query: 68 LAKAVAHHT 76
L KAVA+ T
Sbjct: 184 LVKAVANST 192
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 120 bits (302), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+EKPDV Y+D+GG+DMQKQEIREAVELPL DLY+QIGIDPPRGVLLYGPPG GKTML
Sbjct: 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223
Query: 70 KAVAHHT 76
KAVA+ T
Sbjct: 224 KAVANST 230
>sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subunit 6B OS=Caenorhabditis
elegans GN=rpt-3 PE=3 SV=1
Length = 414
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 56/59 (94%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
DEKPD+ Y DIGG+DMQKQE+REAVELPLTH +LY+QIGIDPPRGVL+YGPPGCGKTML
Sbjct: 153 DEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTML 211
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 112 bits (280), Expect = 6e-25, Method: Composition-based stats.
Identities = 50/66 (75%), Positives = 57/66 (86%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKP V Y D+GG+D+QKQEI+E VELPL DLY+QIGIDPP+GVLLYGPPG GKTML K
Sbjct: 127 EKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVK 186
Query: 71 AVAHHT 76
AVA+HT
Sbjct: 187 AVANHT 192
>sp|Q8U4H3|PAN_PYRFU Proteasome-activating nucleotidase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pan PE=3 SV=1
Length = 396
Score = 105 bits (263), Expect = 5e-23, Method: Composition-based stats.
Identities = 43/64 (67%), Positives = 58/64 (90%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E+P+V Y+DIGG+ Q QE+REA+ELPL H +L++++GIDPP+GVLLYGPPGCGKT++AK
Sbjct: 130 ERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAK 189
Query: 71 AVAH 74
A+AH
Sbjct: 190 AIAH 193
>sp|Q5JHS5|PAN_PYRKO Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pan PE=3
SV=1
Length = 397
Score = 105 bits (263), Expect = 6e-23, Method: Composition-based stats.
Identities = 44/65 (67%), Positives = 59/65 (90%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E+P V Y+DIGG++ Q QE+REA+ELPL H +L++Q+GI+PP+GVLLYGPPGCGKT++AK
Sbjct: 131 ERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAK 190
Query: 71 AVAHH 75
AVA+H
Sbjct: 191 AVANH 195
>sp|Q9V287|PAN_PYRAB Proteasome-activating nucleotidase OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=pan PE=3 SV=2
Length = 396
Score = 105 bits (262), Expect = 9e-23, Method: Composition-based stats.
Identities = 43/64 (67%), Positives = 58/64 (90%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E+P+V Y+DIGG+ Q QE+REA+ELPL H +L++++GIDPP+GVLLYGPPGCGKT++AK
Sbjct: 130 ERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAK 189
Query: 71 AVAH 74
A+AH
Sbjct: 190 ALAH 193
>sp|B6YXR2|PAN_THEON Proteasome-activating nucleotidase OS=Thermococcus onnurineus
(strain NA1) GN=pan PE=3 SV=1
Length = 398
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/64 (67%), Positives = 58/64 (90%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E+P V Y+DIGG+D Q QE+REA+ELPL H +L++++GI+PP+GVLLYGPPGCGKT++AK
Sbjct: 132 ERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAK 191
Query: 71 AVAH 74
A+AH
Sbjct: 192 ALAH 195
>sp|O57940|PAN_PYRHO Proteasome-activating nucleotidase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pan PE=3 SV=1
Length = 399
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E+P+V Y+DIGG+ Q QE+REA+ELPL H +L++++GIDPP+GVLLYGPPGCGKT++AK
Sbjct: 133 ERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAK 192
Query: 71 AVAHHTT 77
A+AH
Sbjct: 193 ALAHEVN 199
>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pan PE=1 SV=1
Length = 430
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 60/74 (81%)
Query: 4 CKPTKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGC 63
K + DE+P+V+Y DIGG++ Q QEIRE VELPL H +L++++GI+PP+G+LLYGPPG
Sbjct: 156 AKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGT 215
Query: 64 GKTMLAKAVAHHTT 77
GKT+LAKAVA T
Sbjct: 216 GKTLLAKAVATETN 229
>sp|C5A6P8|PAN_THEGJ Proteasome-activating nucleotidase OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1
Length = 397
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 44/65 (67%), Positives = 57/65 (87%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKP V Y DIGG++ Q E+REAVELPL H +L++++GI+PP+GVLLYGPPGCGKT++AK
Sbjct: 131 EKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAK 190
Query: 71 AVAHH 75
AVA+H
Sbjct: 191 AVANH 195
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/67 (67%), Positives = 58/67 (86%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+EKP+V Y DIGG+D+Q +EIREAVELPL +L+ ++GI+PP+GVLLYGPPG GKT+LA
Sbjct: 133 EEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLA 192
Query: 70 KAVAHHT 76
KAVA+ T
Sbjct: 193 KAVANQT 199
>sp|Q975U2|PAN_SULTO Proteasome-activating nucleotidase OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=pan PE=3
SV=2
Length = 392
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/63 (71%), Positives = 55/63 (87%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKP+V YSDIGG++ Q EIRE +ELPL + +L+K+IGIDPP+GVLLYGPPG GKT+LAK
Sbjct: 127 EKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGKTLLAK 186
Query: 71 AVA 73
AVA
Sbjct: 187 AVA 189
>sp|Q1B795|ARC_MYCSS Proteasome-associated ATPase OS=Mycobacterium sp. (strain MCS)
GN=mpa PE=3 SV=1
Length = 615
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/65 (64%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV YSDIGG+ Q ++IR+AVELP H DLY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 250 EEVPDVSYSDIGGLTRQIEQIRDAVELPFLHKDLYREYSLRPPKGVLLYGPPGCGKTLIA 309
Query: 70 KAVAH 74
KAVA+
Sbjct: 310 KAVAN 314
>sp|A1UHT0|ARC_MYCSK Proteasome-associated ATPase OS=Mycobacterium sp. (strain KMS)
GN=mpa PE=3 SV=1
Length = 615
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/65 (64%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV YSDIGG+ Q ++IR+AVELP H DLY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 250 EEVPDVSYSDIGGLTRQIEQIRDAVELPFLHKDLYREYSLRPPKGVLLYGPPGCGKTLIA 309
Query: 70 KAVAH 74
KAVA+
Sbjct: 310 KAVAN 314
>sp|A3Q196|ARC_MYCSJ Proteasome-associated ATPase OS=Mycobacterium sp. (strain JLS)
GN=mpa PE=3 SV=1
Length = 615
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/65 (64%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV YSDIGG+ Q ++IR+AVELP H DLY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 250 EEVPDVSYSDIGGLTRQIEQIRDAVELPFLHKDLYREYSLRPPKGVLLYGPPGCGKTLIA 309
Query: 70 KAVAH 74
KAVA+
Sbjct: 310 KAVAN 314
>sp|B1MAH2|ARC_MYCA9 Proteasome-associated ATPase OS=Mycobacterium abscessus (strain
ATCC 19977 / DSM 44196) GN=mpa PE=3 SV=1
Length = 602
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/65 (64%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV YSDIGG+ Q ++IR+AVELP H DLY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 237 EEVPDVSYSDIGGLARQIEQIRDAVELPFLHKDLYQEYSLRPPKGVLLYGPPGCGKTLIA 296
Query: 70 KAVAH 74
KAVA+
Sbjct: 297 KAVAN 301
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/67 (64%), Positives = 56/67 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+EKPDV Y IGG++ Q +E++E VELPL +L+++IGI+PP+GVLLYGPPG GKT+LA
Sbjct: 143 EEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLA 202
Query: 70 KAVAHHT 76
KAVAH T
Sbjct: 203 KAVAHET 209
>sp|A0QZ54|ARC_MYCS2 Proteasome-associated ATPase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=mpa PE=1 SV=1
Length = 613
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/65 (64%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y+DIGG+ Q ++IR+AVELP H DLYK+ + PP+GVLLYGPPGCGKT++A
Sbjct: 248 EEVPDVSYNDIGGLGRQIEQIRDAVELPFLHKDLYKEYSLRPPKGVLLYGPPGCGKTLIA 307
Query: 70 KAVAH 74
KAVA+
Sbjct: 308 KAVAN 312
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/66 (65%), Positives = 55/66 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
DE PDV Y DIGG+D Q +EIRE VE PL +L++++G++PP+GVLLYGPPG GKT+LA
Sbjct: 171 DESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLA 230
Query: 70 KAVAHH 75
KAVA+H
Sbjct: 231 KAVANH 236
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 96.7 bits (239), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/67 (62%), Positives = 53/67 (79%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+ PDV Y DIGG++ Q QE+RE VE+PL +++ ++GIDPP GVLLYGPPG GKTMLA
Sbjct: 142 EHSPDVTYEDIGGLEEQMQEVRETVEMPLDRPEMFAEVGIDPPSGVLLYGPPGTGKTMLA 201
Query: 70 KAVAHHT 76
KAVA+ T
Sbjct: 202 KAVANQT 208
>sp|C3PGA0|ARC_CORA7 AAA ATPase forming ring-shaped complexes OS=Corynebacterium
aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)
GN=arc PE=3 SV=1
Length = 524
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/69 (60%), Positives = 54/69 (78%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y DIGG+D Q IR++VELP H +LY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 184 EEVPDVSYEDIGGLDEQISLIRDSVELPFLHPELYRKYDLQPPKGVLLYGPPGCGKTLIA 243
Query: 70 KAVAHHTTV 78
KAVAH +V
Sbjct: 244 KAVAHSLSV 252
>sp|P40327|PRS4_YEAST 26S protease regulatory subunit 4 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT2 PE=1
SV=3
Length = 437
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 58/71 (81%)
Query: 8 KNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTM 67
K D+ P YSDIGG++ Q QEI+E+VELPLTH +LY+++GI PP+GV+LYG PG GKT+
Sbjct: 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL 231
Query: 68 LAKAVAHHTTV 78
LAKAVA+ T+
Sbjct: 232 LAKAVANQTSA 242
>sp|Q5YUW4|ARC_NOCFA Proteasome-associated ATPase OS=Nocardia farcinica (strain IFM
10152) GN=arc PE=3 SV=1
Length = 586
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/65 (63%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV YSDIGG+ Q ++IR+AVELP H DL+++ + PP+GVLLYGPPGCGKT++A
Sbjct: 221 EEVPDVDYSDIGGLGRQIEQIRDAVELPFLHKDLFREYELRPPKGVLLYGPPGCGKTLIA 280
Query: 70 KAVAH 74
KAVA+
Sbjct: 281 KAVAN 285
>sp|C7MWW2|ARC_SACVD Proteasome-associated ATPase OS=Saccharomonospora viridis (strain
ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
GN=arc PE=3 SV=1
Length = 602
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV+Y DIGG+ Q ++IR+AVELP H DLY Q + PP+GVLLYGPPGCGKT++A
Sbjct: 239 EEVPDVRYEDIGGLYRQIEQIRDAVELPFLHADLYTQYKLRPPKGVLLYGPPGCGKTLIA 298
Query: 70 KAVAH 74
KAVA+
Sbjct: 299 KAVAN 303
>sp|C8XAR0|ARC_NAKMY Proteasome-associated ATPase OS=Nakamurella multipartita (strain
ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) GN=arc PE=3
SV=1
Length = 592
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/65 (63%), Positives = 53/65 (81%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y DIGG+ Q ++IR+AVELP H DLY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 229 EEVPDVAYEDIGGLTRQIEQIRDAVELPFLHADLYREYKLRPPKGVLLYGPPGCGKTLIA 288
Query: 70 KAVAH 74
KAVA+
Sbjct: 289 KAVAN 293
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
+ P Y DIGG++ Q EIREAVELP+T DL+++IGI+PP+GVLLYGPPG GKT+LAK
Sbjct: 146 DAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAK 205
Query: 71 AVAHHT 76
AVAH T
Sbjct: 206 AVAHET 211
>sp|C4LIL2|ARC_CORK4 AAA ATPase forming ring-shaped complexes OS=Corynebacterium
kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=arc
PE=3 SV=2
Length = 572
Score = 95.9 bits (237), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/65 (63%), Positives = 52/65 (80%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E P+V Y DIGG+ Q + I +AVELP TH DLY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 206 EEIPEVSYEDIGGLHNQIEMIHDAVELPFTHPDLYRKFDLQPPKGVLLYGPPGCGKTLIA 265
Query: 70 KAVAH 74
KAVAH
Sbjct: 266 KAVAH 270
>sp|P36612|PRS4_SCHPO 26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mts2 PE=2 SV=1
Length = 448
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 58/71 (81%)
Query: 8 KNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTM 67
K D+ P Y+DIGG++ Q QEI+EAVELPLTH +LY+++GI PP+GV+LYG PG GKT+
Sbjct: 181 KLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL 240
Query: 68 LAKAVAHHTTV 78
LAKAVA+ T+
Sbjct: 241 LAKAVANQTSA 251
>sp|P63345|ARC_MYCTU Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa
PE=1 SV=1
Length = 609
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y+DIGG+ Q ++IR+AVELP H +LY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 244 EEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIA 303
Query: 70 KAVAH 74
KAVA+
Sbjct: 304 KAVAN 308
>sp|C6DPU6|ARC_MYCTK Proteasome-associated ATPase OS=Mycobacterium tuberculosis (strain
KZN 1435 / MDR) GN=mpa PE=3 SV=1
Length = 609
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y+DIGG+ Q ++IR+AVELP H +LY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 244 EEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIA 303
Query: 70 KAVAH 74
KAVA+
Sbjct: 304 KAVAN 308
>sp|A5WP89|ARC_MYCTF Proteasome-associated ATPase OS=Mycobacterium tuberculosis (strain
F11) GN=mpa PE=3 SV=1
Length = 609
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y+DIGG+ Q ++IR+AVELP H +LY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 244 EEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIA 303
Query: 70 KAVAH 74
KAVA+
Sbjct: 304 KAVAN 308
>sp|A5U4E1|ARC_MYCTA Proteasome-associated ATPase OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=mpa PE=3 SV=1
Length = 609
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y+DIGG+ Q ++IR+AVELP H +LY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 244 EEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIA 303
Query: 70 KAVAH 74
KAVA+
Sbjct: 304 KAVAN 308
>sp|C1AQ31|ARC_MYCBT Proteasome-associated ATPase OS=Mycobacterium bovis (strain BCG /
Tokyo 172 / ATCC 35737 / TMC 1019) GN=mpa PE=3 SV=1
Length = 609
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y+DIGG+ Q ++IR+AVELP H +LY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 244 EEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIA 303
Query: 70 KAVAH 74
KAVA+
Sbjct: 304 KAVAN 308
>sp|A1KKF8|ARC_MYCBP Proteasome-associated ATPase OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=mpa PE=3 SV=1
Length = 609
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y+DIGG+ Q ++IR+AVELP H +LY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 244 EEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIA 303
Query: 70 KAVAH 74
KAVA+
Sbjct: 304 KAVAN 308
>sp|P63346|ARC_MYCBO Proteasome-associated ATPase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=mpa PE=3 SV=1
Length = 609
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y+DIGG+ Q ++IR+AVELP H +LY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 244 EEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIA 303
Query: 70 KAVAH 74
KAVA+
Sbjct: 304 KAVAN 308
>sp|A1TAQ3|ARC_MYCVP Proteasome-associated ATPase OS=Mycobacterium vanbaalenii (strain
DSM 7251 / PYR-1) GN=mpa PE=3 SV=1
Length = 615
Score = 95.5 bits (236), Expect = 8e-20, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV Y+DIGG+ Q ++IR+AVELP H +LY++ + PP+GVLLYGPPGCGKT++A
Sbjct: 250 EEVPDVSYNDIGGLGRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIA 309
Query: 70 KAVAH 74
KAVA+
Sbjct: 310 KAVAN 314
>sp|C6WIC8|ARC_ACTMD Proteasome-associated ATPase OS=Actinosynnema mirum (strain ATCC
29888 / DSM 43827 / NBRC 14064 / IMRU 3971) GN=arc PE=3
SV=1
Length = 599
Score = 95.5 bits (236), Expect = 8e-20, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 54/65 (83%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+E PDV+Y DIGG+ Q ++IR+AVELP H DL+++ + PP+GVLLYGPPGCGKT++A
Sbjct: 234 EEVPDVRYEDIGGLSRQIEQIRDAVELPFLHADLFREYKLRPPKGVLLYGPPGCGKTLIA 293
Query: 70 KAVAH 74
KAVA+
Sbjct: 294 KAVAN 298
>sp|C3NFW6|PAN_SULIN Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1
Length = 393
Score = 95.5 bits (236), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 57/69 (82%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
EKP+V YS+IGG++ Q +E+RE VELPL +++++IG++PP+GVLLYGPPG GKTMLAK
Sbjct: 127 EKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAK 186
Query: 71 AVAHHTTVL 79
AVA + +
Sbjct: 187 AVATESNAV 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,272,816
Number of Sequences: 539616
Number of extensions: 1348489
Number of successful extensions: 12337
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 10496
Number of HSP's gapped (non-prelim): 1825
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)