Query psy6772
Match_columns 80
No_of_seqs 106 out of 1360
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 18:00:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 99.8 3.2E-19 7E-24 119.4 7.1 71 9-79 142-212 (406)
2 KOG0727|consensus 99.7 8.7E-17 1.9E-21 104.9 6.8 70 9-78 146-215 (408)
3 KOG0730|consensus 99.7 1.2E-16 2.5E-21 113.1 6.9 71 9-79 425-495 (693)
4 KOG0733|consensus 99.6 4.7E-16 1E-20 109.9 7.3 73 7-79 500-572 (802)
5 PTZ00454 26S protease regulato 99.6 1.7E-15 3.6E-20 103.4 7.2 70 10-79 137-206 (398)
6 KOG0733|consensus 99.6 4E-15 8.6E-20 105.3 6.4 68 11-79 183-250 (802)
7 PTZ00361 26 proteosome regulat 99.5 2E-14 4.3E-19 99.1 7.3 70 9-78 174-243 (438)
8 PRK03992 proteasome-activating 99.5 3.1E-14 6.7E-19 96.8 6.7 69 10-78 123-191 (389)
9 TIGR03689 pup_AAA proteasome A 99.5 3.3E-14 7.2E-19 99.4 6.4 68 10-77 174-241 (512)
10 TIGR01242 26Sp45 26S proteasom 99.5 6.1E-14 1.3E-18 94.4 7.0 69 10-78 114-182 (364)
11 KOG0728|consensus 99.5 5E-14 1.1E-18 92.0 6.2 69 9-77 138-206 (404)
12 KOG0726|consensus 99.5 6.2E-14 1.3E-18 93.0 6.5 70 9-78 176-245 (440)
13 KOG0731|consensus 99.5 5.7E-14 1.2E-18 101.3 6.6 69 10-79 303-371 (774)
14 KOG0736|consensus 99.5 6E-14 1.3E-18 101.2 6.6 70 9-79 663-732 (953)
15 KOG0652|consensus 99.5 2E-13 4.2E-18 89.7 7.1 70 9-78 162-231 (424)
16 KOG0729|consensus 99.5 1.7E-13 3.6E-18 90.3 6.5 70 9-78 168-237 (435)
17 TIGR01243 CDC48 AAA family ATP 99.4 3E-13 6.6E-18 97.7 7.2 69 11-79 446-514 (733)
18 KOG0743|consensus 99.4 4.1E-13 8.8E-18 92.2 5.6 65 14-78 197-261 (457)
19 KOG0734|consensus 99.4 4E-13 8.6E-18 94.4 5.3 70 9-79 295-364 (752)
20 TIGR01241 FtsH_fam ATP-depende 99.4 1.2E-12 2.6E-17 91.2 6.9 69 10-79 47-115 (495)
21 TIGR01243 CDC48 AAA family ATP 99.4 1.5E-12 3.2E-17 94.2 7.4 68 11-78 171-238 (733)
22 KOG0737|consensus 99.4 9.6E-13 2.1E-17 88.6 5.7 69 11-79 85-154 (386)
23 KOG0738|consensus 99.4 6.5E-13 1.4E-17 90.4 4.9 72 7-79 201-272 (491)
24 KOG0651|consensus 99.4 1.5E-12 3.4E-17 86.6 5.4 69 11-79 125-193 (388)
25 COG0464 SpoVK ATPases of the A 99.3 2.9E-12 6.2E-17 89.1 6.9 70 10-79 234-303 (494)
26 KOG0735|consensus 99.3 3.7E-12 7.9E-17 91.7 7.0 70 10-79 659-728 (952)
27 KOG0739|consensus 99.3 1.1E-11 2.5E-16 82.5 5.5 70 8-78 123-192 (439)
28 CHL00195 ycf46 Ycf46; Provisio 99.3 2.3E-11 5E-16 85.0 7.0 65 12-79 222-286 (489)
29 CHL00176 ftsH cell division pr 99.2 3.2E-11 7E-16 86.4 6.8 68 11-79 176-243 (638)
30 COG1120 FepC ABC-type cobalami 99.2 4.5E-12 9.7E-17 82.4 0.7 46 34-79 8-55 (258)
31 COG1223 Predicted ATPase (AAA+ 99.2 4.1E-11 8.9E-16 78.6 4.0 67 9-79 112-178 (368)
32 COG1116 TauB ABC-type nitrate/ 99.1 1E-11 2.2E-16 80.1 1.0 46 34-79 9-56 (248)
33 KOG0741|consensus 99.1 1.4E-10 3E-15 81.8 6.6 69 11-79 212-283 (744)
34 COG3842 PotA ABC-type spermidi 99.1 1.4E-11 3.1E-16 83.0 1.3 46 34-79 11-58 (352)
35 COG0465 HflB ATP-dependent Zn 99.1 1.1E-10 2.4E-15 82.9 5.0 67 12-79 144-210 (596)
36 KOG0732|consensus 99.1 2.5E-10 5.3E-15 84.9 5.7 66 11-76 258-323 (1080)
37 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.0 3.8E-11 8.2E-16 75.5 0.5 39 41-79 17-57 (218)
38 COG3839 MalK ABC-type sugar tr 99.0 5.8E-11 1.2E-15 79.8 1.3 46 34-79 9-56 (338)
39 cd03259 ABC_Carb_Solutes_like 99.0 6.7E-11 1.5E-15 74.2 1.3 45 35-79 7-53 (213)
40 COG1121 ZnuC ABC-type Mn/Zn tr 99.0 4.5E-11 9.8E-16 77.6 0.3 46 34-79 10-57 (254)
41 TIGR02315 ABC_phnC phosphonate 99.0 1E-10 2.3E-15 74.5 2.0 40 40-79 14-55 (243)
42 cd03235 ABC_Metallic_Cations A 99.0 4.9E-11 1.1E-15 74.8 0.5 45 35-79 6-52 (213)
43 cd03263 ABC_subfamily_A The AB 99.0 7.8E-11 1.7E-15 74.2 1.3 39 41-79 15-55 (220)
44 TIGR03608 L_ocin_972_ABC putat 99.0 4E-11 8.6E-16 74.8 -0.1 44 36-79 6-51 (206)
45 cd03225 ABC_cobalt_CbiO_domain 99.0 7.3E-11 1.6E-15 73.9 1.1 39 41-79 14-54 (211)
46 cd03267 ABC_NatA_like Similar 99.0 1.3E-10 2.8E-15 74.2 2.2 50 30-79 23-74 (236)
47 TIGR03410 urea_trans_UrtE urea 99.0 6.4E-11 1.4E-15 75.1 0.8 44 36-79 8-53 (230)
48 cd03265 ABC_DrrA DrrA is the A 99.0 6.4E-11 1.4E-15 74.7 0.7 45 35-79 7-53 (220)
49 COG4559 ABC-type hemin transpo 99.0 9.8E-11 2.1E-15 74.8 1.4 46 34-79 7-54 (259)
50 cd03261 ABC_Org_Solvent_Resist 99.0 5E-11 1.1E-15 75.8 0.1 43 37-79 9-53 (235)
51 cd03218 ABC_YhbG The ABC trans 99.0 8E-11 1.7E-15 74.6 1.0 45 35-79 7-53 (232)
52 cd03226 ABC_cobalt_CbiO_domain 99.0 6.9E-11 1.5E-15 73.9 0.7 45 35-79 6-53 (205)
53 cd03224 ABC_TM1139_LivF_branch 99.0 7.1E-11 1.5E-15 74.4 0.8 44 36-79 8-53 (222)
54 cd03301 ABC_MalK_N The N-termi 99.0 8.3E-11 1.8E-15 73.7 0.9 44 36-79 8-53 (213)
55 cd03219 ABC_Mj1267_LivG_branch 99.0 5.8E-11 1.3E-15 75.4 0.1 43 37-79 9-53 (236)
56 cd03257 ABC_NikE_OppD_transpor 99.0 1.2E-10 2.6E-15 73.5 1.5 38 42-79 19-58 (228)
57 PRK10247 putative ABC transpor 99.0 9.2E-11 2E-15 74.4 0.9 45 35-79 14-60 (225)
58 cd03258 ABC_MetN_methionine_tr 99.0 8.3E-11 1.8E-15 74.7 0.7 38 42-79 19-58 (233)
59 cd03262 ABC_HisP_GlnQ_permease 99.0 8.9E-11 1.9E-15 73.5 0.8 43 37-79 9-53 (213)
60 TIGR02673 FtsE cell division A 99.0 1.3E-10 2.8E-15 72.9 1.4 39 41-79 15-55 (214)
61 TIGR01166 cbiO cobalt transpor 99.0 1.8E-10 4E-15 71.2 2.0 39 41-79 5-45 (190)
62 cd03296 ABC_CysA_sulfate_impor 99.0 8.4E-11 1.8E-15 75.0 0.3 44 36-79 10-55 (239)
63 cd03294 ABC_Pro_Gly_Bertaine T 99.0 1.8E-10 3.9E-15 74.9 1.8 47 33-79 29-77 (269)
64 cd03256 ABC_PhnC_transporter A 99.0 1.2E-10 2.7E-15 74.1 1.0 44 36-79 8-54 (241)
65 cd03266 ABC_NatA_sodium_export 99.0 1.4E-10 3.1E-15 72.9 1.3 38 42-79 19-58 (218)
66 cd03260 ABC_PstB_phosphate_tra 99.0 1.6E-10 3.4E-15 73.1 1.4 41 36-76 8-50 (227)
67 cd03269 ABC_putative_ATPase Th 99.0 7.6E-11 1.6E-15 73.8 -0.1 41 39-79 11-53 (210)
68 PRK11264 putative amino-acid A 99.0 1.1E-10 2.4E-15 74.8 0.6 45 35-79 10-56 (250)
69 PRK11247 ssuB aliphatic sulfon 99.0 1.2E-10 2.7E-15 75.4 0.9 43 37-79 21-65 (257)
70 PRK13638 cbiO cobalt transport 99.0 1.6E-10 3.4E-15 75.1 1.3 45 35-79 8-54 (271)
71 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.0 1.5E-10 3.2E-15 73.5 1.2 48 32-79 26-75 (224)
72 cd03264 ABC_drug_resistance_li 99.0 1.1E-10 2.3E-15 73.2 0.5 40 40-79 12-52 (211)
73 cd03293 ABC_NrtD_SsuB_transpor 99.0 9.3E-11 2E-15 74.0 0.2 39 41-79 17-57 (220)
74 PRK11248 tauB taurine transpor 99.0 1.2E-10 2.6E-15 75.3 0.6 43 37-79 10-54 (255)
75 COG1126 GlnQ ABC-type polar am 99.0 1.6E-10 3.6E-15 73.6 1.2 45 34-78 8-54 (240)
76 KOG0740|consensus 99.0 7.6E-10 1.6E-14 76.2 4.5 71 8-79 143-213 (428)
77 cd03292 ABC_FtsE_transporter F 99.0 1.5E-10 3.1E-15 72.6 0.7 39 41-79 14-54 (214)
78 PRK13540 cytochrome c biogenes 99.0 1.3E-10 2.8E-15 72.5 0.5 43 37-79 10-54 (200)
79 cd03216 ABC_Carb_Monos_I This 99.0 1.2E-10 2.5E-15 70.9 0.1 42 38-79 10-53 (163)
80 TIGR03864 PQQ_ABC_ATP ABC tran 99.0 1.2E-10 2.7E-15 74.1 0.2 43 37-79 10-54 (236)
81 PRK11124 artP arginine transpo 99.0 1.6E-10 3.5E-15 73.8 0.7 44 36-79 10-55 (242)
82 cd03231 ABC_CcmA_heme_exporter 99.0 2E-10 4.3E-15 71.7 1.1 45 35-79 7-53 (201)
83 TIGR02323 CP_lyasePhnK phospho 99.0 1.9E-10 4.1E-15 73.9 1.0 43 37-79 12-56 (253)
84 PRK10895 lipopolysaccharide AB 99.0 1.4E-10 3E-15 74.0 0.4 44 36-79 11-56 (241)
85 cd03229 ABC_Class3 This class 99.0 1.3E-10 2.8E-15 71.4 0.2 41 39-79 11-53 (178)
86 PRK14250 phosphate ABC transpo 99.0 1.7E-10 3.8E-15 73.8 0.8 43 37-79 12-56 (241)
87 PRK09493 glnQ glutamine ABC tr 99.0 1.5E-10 3.3E-15 73.8 0.5 43 37-79 10-54 (240)
88 TIGR01288 nodI ATP-binding ABC 99.0 1.6E-10 3.5E-15 76.3 0.6 45 35-79 11-57 (303)
89 PRK13543 cytochrome c biogenes 99.0 1.7E-10 3.7E-15 72.7 0.7 45 35-79 18-64 (214)
90 cd03228 ABCC_MRP_Like The MRP 98.9 3.1E-10 6.6E-15 69.3 1.8 38 42-79 16-55 (171)
91 TIGR01189 ccmA heme ABC export 98.9 1.4E-10 3E-15 72.2 0.2 42 38-79 10-53 (198)
92 PRK13548 hmuV hemin importer A 98.9 1.7E-10 3.8E-15 74.5 0.6 45 35-79 9-55 (258)
93 COG1117 PstB ABC-type phosphat 98.9 5.9E-10 1.3E-14 71.2 2.9 45 34-78 13-59 (253)
94 cd03295 ABC_OpuCA_Osmoprotecti 98.9 2.1E-10 4.5E-15 73.3 0.8 44 36-79 8-54 (242)
95 TIGR02211 LolD_lipo_ex lipopro 98.9 1.9E-10 4.1E-15 72.4 0.6 38 42-79 19-58 (221)
96 TIGR01188 drrA daunorubicin re 98.9 2.4E-10 5.3E-15 75.4 1.1 39 41-79 6-46 (302)
97 PRK14267 phosphate ABC transpo 98.9 2.2E-10 4.8E-15 73.5 0.9 44 35-78 11-56 (253)
98 cd03268 ABC_BcrA_bacitracin_re 98.9 1.7E-10 3.8E-15 72.1 0.4 43 37-79 9-53 (208)
99 TIGR02881 spore_V_K stage V sp 98.9 1.5E-09 3.2E-14 70.3 4.7 59 17-76 5-66 (261)
100 PRK13538 cytochrome c biogenes 98.9 1.7E-10 3.6E-15 72.2 0.2 42 38-79 11-54 (204)
101 PRK11614 livF leucine/isoleuci 98.9 2.1E-10 4.5E-15 73.0 0.6 45 35-79 12-58 (237)
102 PRK11701 phnK phosphonate C-P 98.9 1.8E-10 4E-15 74.2 0.4 45 35-79 13-59 (258)
103 COG1118 CysA ABC-type sulfate/ 98.9 5.6E-10 1.2E-14 74.3 2.6 46 34-79 8-55 (345)
104 PRK10908 cell division protein 98.9 2.3E-10 5E-15 72.3 0.7 39 41-79 15-55 (222)
105 TIGR00972 3a0107s01c2 phosphat 98.9 2.7E-10 5.8E-15 73.0 1.0 42 38-79 11-54 (247)
106 PRK13539 cytochrome c biogenes 98.9 1.9E-10 4E-15 72.2 0.2 43 37-79 11-55 (207)
107 PRK14273 phosphate ABC transpo 98.9 3.4E-10 7.3E-15 72.8 1.4 44 35-78 14-59 (254)
108 cd03214 ABC_Iron-Siderophores_ 98.9 2.1E-10 4.6E-15 70.5 0.4 42 38-79 9-52 (180)
109 PRK14247 phosphate ABC transpo 98.9 2.7E-10 5.9E-15 73.0 0.9 43 36-78 11-55 (250)
110 TIGR03411 urea_trans_UrtD urea 98.9 2.4E-10 5.2E-15 72.9 0.6 44 36-79 10-55 (242)
111 cd03230 ABC_DR_subfamily_A Thi 98.9 2.2E-10 4.8E-15 70.1 0.4 39 41-79 13-53 (173)
112 PRK11300 livG leucine/isoleuci 98.9 2E-10 4.3E-15 73.8 0.2 45 35-79 12-58 (255)
113 PRK10636 putative ABC transpor 98.9 2.9E-10 6.3E-15 81.5 1.0 46 34-79 7-54 (638)
114 PRK13537 nodulation ABC transp 98.9 2.2E-10 4.8E-15 75.9 0.4 46 34-79 13-60 (306)
115 PRK09544 znuC high-affinity zi 98.9 1.7E-10 3.6E-15 74.5 -0.2 45 35-79 11-57 (251)
116 PRK10253 iron-enterobactin tra 98.9 2.1E-10 4.6E-15 74.3 0.3 45 35-79 14-60 (265)
117 TIGR00960 3a0501s02 Type II (G 98.9 3.4E-10 7.5E-15 71.1 1.2 38 42-79 17-56 (216)
118 TIGR03005 ectoine_ehuA ectoine 98.9 2.5E-10 5.4E-15 73.4 0.5 43 37-79 9-53 (252)
119 PRK15177 Vi polysaccharide exp 98.9 4.7E-10 1E-14 70.8 1.8 36 44-79 3-40 (213)
120 cd03300 ABC_PotA_N PotA is an 98.9 3.5E-10 7.6E-15 71.9 1.1 44 36-79 8-53 (232)
121 PRK13547 hmuV hemin importer A 98.9 2.3E-10 5.1E-15 74.7 0.3 44 36-79 9-54 (272)
122 cd03251 ABCC_MsbA MsbA is an e 98.9 4E-10 8.6E-15 71.5 1.3 38 42-79 16-55 (234)
123 COG2884 FtsE Predicted ATPase 98.9 1.6E-09 3.5E-14 68.2 3.9 39 41-79 15-55 (223)
124 PRK13536 nodulation factor exp 98.9 2.1E-10 4.6E-15 77.0 -0.0 46 34-79 47-94 (340)
125 cd03246 ABCC_Protease_Secretio 98.9 4.7E-10 1E-14 68.7 1.5 38 42-79 16-55 (173)
126 PRK14272 phosphate ABC transpo 98.9 3.1E-10 6.8E-15 72.8 0.7 44 35-78 11-56 (252)
127 PRK09984 phosphonate/organopho 98.9 3E-10 6.5E-15 73.4 0.6 43 37-79 13-57 (262)
128 PRK11231 fecE iron-dicitrate t 98.9 2.3E-10 5.1E-15 73.6 0.1 45 35-79 9-55 (255)
129 cd03245 ABCC_bacteriocin_expor 98.9 5E-10 1.1E-14 70.5 1.6 39 41-79 17-57 (220)
130 COG4619 ABC-type uncharacteriz 98.9 8.4E-10 1.8E-14 68.6 2.5 45 35-79 10-56 (223)
131 PRK11629 lolD lipoprotein tran 98.9 3E-10 6.4E-15 72.3 0.6 38 42-79 23-62 (233)
132 PRK10575 iron-hydroxamate tran 98.9 2.2E-10 4.8E-15 74.2 -0.1 45 35-79 18-64 (265)
133 PRK11831 putative ABC transpor 98.9 2.1E-10 4.5E-15 74.5 -0.3 43 37-79 16-60 (269)
134 KOG0730|consensus 98.9 3.6E-09 7.8E-14 75.7 5.8 65 13-78 180-244 (693)
135 PF05496 RuvB_N: Holliday junc 98.9 2.8E-09 6.2E-14 68.3 4.8 59 13-79 19-77 (233)
136 cd03254 ABCC_Glucan_exporter_l 98.9 8.8E-10 1.9E-14 69.7 2.4 38 42-79 17-56 (229)
137 TIGR03740 galliderm_ABC gallid 98.9 3E-10 6.6E-15 71.7 0.3 42 38-79 10-53 (223)
138 COG4133 CcmA ABC-type transpor 98.9 9.3E-10 2E-14 69.0 2.4 44 37-80 11-56 (209)
139 TIGR01978 sufC FeS assembly AT 98.9 3.3E-10 7.2E-15 72.2 0.5 42 35-76 7-50 (243)
140 COG1124 DppF ABC-type dipeptid 98.9 5.6E-10 1.2E-14 72.0 1.5 38 42-79 21-60 (252)
141 PRK14253 phosphate ABC transpo 98.9 4.4E-10 9.6E-15 72.0 0.9 43 36-78 11-55 (249)
142 PRK10584 putative ABC transpor 98.9 7.3E-10 1.6E-14 70.1 1.9 37 43-79 25-63 (228)
143 COG1127 Ttg2A ABC-type transpo 98.9 5.4E-10 1.2E-14 72.2 1.2 46 34-79 14-61 (263)
144 PRK14262 phosphate ABC transpo 98.9 4.5E-10 9.7E-15 72.0 0.8 41 37-77 12-54 (250)
145 PRK14241 phosphate transporter 98.9 3.5E-10 7.7E-15 72.9 0.3 44 35-78 11-56 (258)
146 cd03250 ABCC_MRP_domain1 Domai 98.9 6.2E-10 1.3E-14 69.5 1.4 38 42-79 19-58 (204)
147 PRK11147 ABC transporter ATPas 98.9 3.8E-10 8.3E-15 80.7 0.5 46 34-79 9-56 (635)
148 cd03290 ABCC_SUR1_N The SUR do 98.9 8.3E-10 1.8E-14 69.5 2.0 39 41-79 14-54 (218)
149 CHL00181 cbbX CbbX; Provisiona 98.9 4.1E-09 8.9E-14 69.5 5.3 58 18-76 23-83 (287)
150 cd03215 ABC_Carb_Monos_II This 98.9 7.6E-10 1.6E-14 68.2 1.7 37 43-79 15-53 (182)
151 PRK10938 putative molybdenum t 98.9 6.6E-10 1.4E-14 77.2 1.6 46 34-79 9-56 (490)
152 TIGR02769 nickel_nikE nickel i 98.9 6.2E-10 1.3E-14 72.1 1.3 39 41-79 24-64 (265)
153 PRK11000 maltose/maltodextrin 98.9 3.3E-10 7.1E-15 76.8 0.0 43 37-79 12-56 (369)
154 cd03244 ABCC_MRP_domain2 Domai 98.9 1.1E-09 2.3E-14 69.0 2.4 38 42-79 18-57 (221)
155 PRK14240 phosphate transporter 98.9 5.3E-10 1.1E-14 71.7 1.0 43 35-77 10-54 (250)
156 cd03247 ABCC_cytochrome_bd The 98.9 5E-10 1.1E-14 68.7 0.8 38 42-79 16-55 (178)
157 PRK14242 phosphate transporter 98.9 5.2E-10 1.1E-14 71.8 0.9 41 37-77 15-57 (253)
158 COG1131 CcmA ABC-type multidru 98.9 4.4E-10 9.6E-15 74.2 0.6 46 34-79 10-58 (293)
159 COG4525 TauB ABC-type taurine 98.9 2.2E-09 4.8E-14 68.1 3.6 40 40-79 17-58 (259)
160 PRK11819 putative ABC transpor 98.9 4.5E-10 9.8E-15 79.2 0.6 46 34-79 12-60 (556)
161 COG1136 SalX ABC-type antimicr 98.9 1.1E-09 2.3E-14 70.2 2.2 38 42-79 19-58 (226)
162 PRK14274 phosphate ABC transpo 98.9 4.6E-10 1E-14 72.4 0.5 43 35-77 19-63 (259)
163 PRK10619 histidine/lysine/argi 98.9 2.8E-10 6.1E-15 73.3 -0.5 45 35-79 12-58 (257)
164 PRK14235 phosphate transporter 98.9 3.5E-10 7.7E-15 73.4 -0.0 44 35-78 26-71 (267)
165 PRK11432 fbpC ferric transport 98.9 3.8E-10 8.3E-15 76.1 0.1 45 35-79 13-59 (351)
166 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.9 3.4E-10 7.4E-15 67.7 -0.2 39 41-79 13-53 (144)
167 TIGR03873 F420-0_ABC_ATP propo 98.9 3.8E-10 8.2E-15 72.7 -0.0 44 36-79 9-54 (256)
168 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.9 9.9E-10 2.1E-14 69.9 1.9 38 42-79 17-56 (238)
169 PRK10733 hflB ATP-dependent me 98.9 6.3E-09 1.4E-13 74.9 6.2 67 12-79 146-212 (644)
170 cd03223 ABCD_peroxisomal_ALDP 98.9 9.8E-10 2.1E-14 67.0 1.7 38 42-79 15-54 (166)
171 PRK15056 manganese/iron transp 98.9 3.9E-10 8.4E-15 73.4 -0.1 39 41-79 20-60 (272)
172 COG1125 OpuBA ABC-type proline 98.9 7.4E-10 1.6E-14 72.4 1.2 46 34-79 7-54 (309)
173 PRK13541 cytochrome c biogenes 98.9 4.5E-10 9.7E-15 69.8 0.2 37 42-79 15-53 (195)
174 PRK10744 pstB phosphate transp 98.9 5.5E-10 1.2E-14 72.2 0.6 42 36-77 21-64 (260)
175 PRK15112 antimicrobial peptide 98.9 1.1E-09 2.4E-14 71.1 1.9 38 42-79 27-66 (267)
176 cd03369 ABCC_NFT1 Domain 2 of 98.9 1.5E-09 3.3E-14 67.9 2.5 38 42-79 22-61 (207)
177 PRK14249 phosphate ABC transpo 98.9 6E-10 1.3E-14 71.5 0.7 42 38-79 14-57 (251)
178 PRK14261 phosphate ABC transpo 98.9 5.7E-10 1.2E-14 71.7 0.5 43 35-77 13-57 (253)
179 cd03248 ABCC_TAP TAP, the Tran 98.9 1.5E-09 3.2E-14 68.7 2.4 38 42-79 28-67 (226)
180 PRK14268 phosphate ABC transpo 98.9 6E-10 1.3E-14 71.9 0.6 44 35-78 19-64 (258)
181 PRK10762 D-ribose transporter 98.9 5.8E-10 1.3E-14 77.8 0.6 46 34-79 10-57 (501)
182 TIGR03265 PhnT2 putative 2-ami 98.8 4.1E-10 8.8E-15 76.0 -0.2 45 35-79 11-57 (353)
183 PRK15064 ABC transporter ATP-b 98.8 6.5E-10 1.4E-14 78.0 0.8 45 35-79 8-54 (530)
184 TIGR02324 CP_lyasePhnL phospho 98.8 1.3E-09 2.8E-14 68.8 2.1 38 42-79 22-61 (224)
185 cd03252 ABCC_Hemolysin The ABC 98.8 1.2E-09 2.5E-14 69.6 1.9 39 41-79 15-55 (237)
186 TIGR00968 3a0106s01 sulfate AB 98.8 5.9E-10 1.3E-14 71.2 0.4 42 38-79 10-53 (237)
187 PRK10851 sulfate/thiosulfate t 98.8 4E-10 8.6E-15 76.0 -0.4 43 37-79 11-55 (353)
188 PRK13644 cbiO cobalt transport 98.8 7.6E-10 1.7E-14 72.2 0.9 39 41-79 15-55 (274)
189 TIGR02770 nickel_nikD nickel i 98.8 1.1E-09 2.4E-14 69.6 1.6 35 44-78 2-38 (230)
190 COG2274 SunT ABC-type bacterio 98.8 1.8E-09 3.8E-14 78.4 2.9 45 35-79 480-526 (709)
191 PRK14246 phosphate ABC transpo 98.8 7.7E-10 1.7E-14 71.6 0.9 46 34-79 16-63 (257)
192 PRK13632 cbiO cobalt transport 98.8 9.7E-10 2.1E-14 71.5 1.4 39 41-79 22-62 (271)
193 TIGR02868 CydC thiol reductant 98.8 9.7E-10 2.1E-14 76.9 1.5 46 34-79 340-388 (529)
194 PRK14237 phosphate transporter 98.8 6.5E-10 1.4E-14 72.2 0.6 44 35-78 27-72 (267)
195 cd03234 ABCG_White The White s 98.8 1.5E-09 3.2E-14 68.8 2.2 37 41-77 20-58 (226)
196 PRK14259 phosphate ABC transpo 98.8 5.3E-10 1.2E-14 72.7 0.2 43 35-77 20-64 (269)
197 PRK11650 ugpC glycerol-3-phosp 98.8 5.2E-10 1.1E-14 75.6 0.1 40 40-79 16-57 (356)
198 PRK14238 phosphate transporter 98.8 7.3E-10 1.6E-14 72.1 0.8 44 34-77 30-75 (271)
199 TIGR01184 ntrCD nitrate transp 98.8 1.4E-09 3E-14 69.3 2.0 35 45-79 2-38 (230)
200 COG1134 TagH ABC-type polysacc 98.8 1.4E-09 3.1E-14 70.1 2.1 41 40-80 39-81 (249)
201 PRK14260 phosphate ABC transpo 98.8 7.5E-10 1.6E-14 71.5 0.8 44 35-78 14-59 (259)
202 PRK13652 cbiO cobalt transport 98.8 7.4E-10 1.6E-14 72.3 0.8 38 42-79 18-57 (277)
203 PRK09452 potA putrescine/sperm 98.8 5E-10 1.1E-14 76.2 -0.1 45 35-79 21-67 (375)
204 TIGR03522 GldA_ABC_ATP gliding 98.8 3.8E-10 8.2E-15 74.5 -0.6 43 37-79 11-55 (301)
205 PRK14256 phosphate ABC transpo 98.8 6.4E-10 1.4E-14 71.4 0.4 43 35-77 11-55 (252)
206 PRK14270 phosphate ABC transpo 98.8 8E-10 1.7E-14 70.9 0.8 41 38-78 14-56 (251)
207 PRK10636 putative ABC transpor 98.8 8.4E-10 1.8E-14 79.1 1.0 46 34-79 318-365 (638)
208 PRK14251 phosphate ABC transpo 98.8 7.1E-10 1.5E-14 71.1 0.6 43 35-77 11-55 (251)
209 TIGR03719 ABC_ABC_ChvD ATP-bin 98.8 8.2E-10 1.8E-14 77.9 0.9 46 34-79 10-58 (552)
210 cd03213 ABCG_EPDR ABCG transpo 98.8 1.1E-09 2.3E-14 68.2 1.3 38 41-78 22-63 (194)
211 PRK13649 cbiO cobalt transport 98.8 1.1E-09 2.4E-14 71.4 1.5 38 42-79 21-60 (280)
212 PRK09700 D-allose transporter 98.8 7.4E-10 1.6E-14 77.3 0.6 46 34-79 11-58 (510)
213 PRK14243 phosphate transporter 98.8 8.5E-10 1.8E-14 71.5 0.9 44 34-77 16-61 (264)
214 PF00005 ABC_tran: ABC transpo 98.8 2.9E-10 6.2E-15 66.7 -1.3 33 46-78 3-37 (137)
215 CHL00131 ycf16 sulfate ABC tra 98.8 7.6E-10 1.7E-14 71.0 0.5 38 38-75 17-56 (252)
216 PRK15064 ABC transporter ATP-b 98.8 1.1E-09 2.3E-14 76.9 1.2 46 34-79 325-372 (530)
217 PRK09536 btuD corrinoid ABC tr 98.8 5.2E-10 1.1E-14 76.7 -0.3 46 34-79 9-56 (402)
218 PRK09580 sufC cysteine desulfu 98.8 9.5E-10 2.1E-14 70.3 0.9 41 36-76 9-51 (248)
219 TIGR02982 heterocyst_DevA ABC 98.8 8.3E-10 1.8E-14 69.7 0.6 39 41-79 18-58 (220)
220 PRK13648 cbiO cobalt transport 98.8 1.5E-09 3.3E-14 70.5 1.8 38 42-79 23-62 (269)
221 PRK10419 nikE nickel transport 98.8 6.9E-10 1.5E-14 72.1 0.2 39 41-79 25-65 (268)
222 PRK13646 cbiO cobalt transport 98.8 1.3E-09 2.9E-14 71.4 1.5 38 42-79 21-60 (286)
223 PRK14265 phosphate ABC transpo 98.8 7.5E-10 1.6E-14 72.2 0.4 44 34-77 26-71 (274)
224 TIGR03258 PhnT 2-aminoethylpho 98.8 6.7E-10 1.4E-14 75.2 0.1 45 35-79 12-58 (362)
225 PRK14269 phosphate ABC transpo 98.8 6.3E-10 1.4E-14 71.3 0.0 44 34-77 8-53 (246)
226 PRK13645 cbiO cobalt transport 98.8 1.2E-09 2.6E-14 71.6 1.3 38 42-79 25-64 (289)
227 PRK10418 nikD nickel transport 98.8 8E-10 1.7E-14 71.2 0.4 38 41-78 16-55 (254)
228 PRK15439 autoinducer 2 ABC tra 98.8 7.7E-10 1.7E-14 77.4 0.3 46 34-79 17-64 (510)
229 TIGR01186 proV glycine betaine 98.8 1.1E-09 2.4E-14 74.3 1.0 40 40-79 5-46 (363)
230 PRK13640 cbiO cobalt transport 98.8 1.5E-09 3.3E-14 71.0 1.7 38 42-79 21-60 (282)
231 PRK14271 phosphate ABC transpo 98.8 7.5E-10 1.6E-14 72.3 0.2 45 34-78 27-73 (276)
232 PRK11153 metN DL-methionine tr 98.8 6.8E-10 1.5E-14 74.6 0.0 39 41-79 18-58 (343)
233 cd03253 ABCC_ATM1_transporter 98.8 1.7E-09 3.7E-14 68.7 1.8 39 41-79 14-54 (236)
234 PRK14248 phosphate ABC transpo 98.8 1E-09 2.3E-14 71.1 0.8 42 35-76 28-71 (268)
235 cd03217 ABC_FeS_Assembly ABC-t 98.8 1.1E-09 2.3E-14 68.5 0.7 39 38-76 10-50 (200)
236 cd03233 ABC_PDR_domain1 The pl 98.8 1.2E-09 2.7E-14 68.3 1.0 37 41-77 20-58 (202)
237 cd03238 ABC_UvrA The excision 98.8 1.8E-09 3.8E-14 66.8 1.7 32 42-73 9-42 (176)
238 PRK14239 phosphate transporter 98.8 1E-09 2.2E-14 70.4 0.6 42 35-76 12-55 (252)
239 TIGR02880 cbbX_cfxQ probable R 98.8 1.1E-08 2.4E-13 67.3 5.5 58 19-77 23-83 (284)
240 PRK14236 phosphate transporter 98.8 9.7E-10 2.1E-14 71.5 0.4 44 35-78 32-77 (272)
241 PRK13647 cbiO cobalt transport 98.8 1.6E-09 3.6E-14 70.6 1.5 38 42-79 19-58 (274)
242 PRK11147 ABC transporter ATPas 98.8 1E-09 2.2E-14 78.6 0.5 46 34-79 325-372 (635)
243 PLN00020 ribulose bisphosphate 98.8 6.6E-09 1.4E-13 70.9 4.4 33 47-79 143-175 (413)
244 cd03222 ABC_RNaseL_inhibitor T 98.8 1.1E-09 2.3E-14 67.9 0.5 31 49-79 20-52 (177)
245 PRK13549 xylose transporter AT 98.8 9.9E-10 2.2E-14 76.7 0.4 45 34-78 11-57 (506)
246 PRK14244 phosphate ABC transpo 98.8 8.2E-10 1.8E-14 70.9 0.0 41 37-77 14-56 (251)
247 KOG0058|consensus 98.8 3.7E-09 8.1E-14 76.2 3.3 41 40-80 480-522 (716)
248 PRK14258 phosphate ABC transpo 98.8 1.2E-09 2.5E-14 70.7 0.7 43 36-78 15-59 (261)
249 PRK13641 cbiO cobalt transport 98.8 1.9E-09 4E-14 70.8 1.6 38 42-79 21-60 (287)
250 COG1119 ModF ABC-type molybden 98.8 1.6E-09 3.5E-14 70.0 1.2 46 34-79 37-84 (257)
251 cd03298 ABC_ThiQ_thiamine_tran 98.8 3.1E-09 6.8E-14 66.6 2.5 34 46-79 16-51 (211)
252 PRK13637 cbiO cobalt transport 98.8 1.7E-09 3.7E-14 71.0 1.3 38 42-79 21-60 (287)
253 PRK10982 galactose/methyl gala 98.8 8.3E-10 1.8E-14 76.8 -0.2 45 35-79 5-51 (491)
254 PRK14245 phosphate ABC transpo 98.8 9.6E-10 2.1E-14 70.5 0.1 39 38-76 13-53 (250)
255 PRK14252 phosphate ABC transpo 98.8 1.1E-09 2.4E-14 70.9 0.3 44 35-78 23-68 (265)
256 PRK13651 cobalt transporter AT 98.8 1.9E-09 4.2E-14 71.4 1.5 38 42-79 21-60 (305)
257 PRK13635 cbiO cobalt transport 98.8 2.2E-09 4.7E-14 70.2 1.7 38 42-79 21-60 (279)
258 PRK13643 cbiO cobalt transport 98.8 2E-09 4.4E-14 70.7 1.5 38 42-79 20-59 (288)
259 PRK14255 phosphate ABC transpo 98.8 1.2E-09 2.6E-14 70.2 0.3 43 35-77 12-56 (252)
260 PRK13633 cobalt transporter AT 98.8 2.1E-09 4.6E-14 70.2 1.5 38 42-79 24-63 (280)
261 PRK13650 cbiO cobalt transport 98.8 2E-09 4.3E-14 70.4 1.4 38 42-79 21-60 (279)
262 PRK13636 cbiO cobalt transport 98.8 1.5E-09 3.2E-14 71.1 0.8 39 41-79 19-59 (283)
263 PRK13639 cbiO cobalt transport 98.8 1.9E-09 4.1E-14 70.3 1.2 38 42-79 16-55 (275)
264 PRK14254 phosphate ABC transpo 98.8 1.1E-09 2.4E-14 71.8 0.1 44 34-77 45-90 (285)
265 TIGR03269 met_CoM_red_A2 methy 98.8 1.7E-09 3.6E-14 75.7 0.9 42 35-76 7-50 (520)
266 COG4987 CydC ABC-type transpor 98.8 4.4E-09 9.5E-14 74.0 3.0 46 34-79 342-391 (573)
267 TIGR03719 ABC_ABC_ChvD ATP-bin 98.8 1.2E-09 2.5E-14 77.1 0.1 46 34-79 328-375 (552)
268 COG0488 Uup ATPase components 98.8 8.9E-10 1.9E-14 77.8 -0.5 46 34-79 327-375 (530)
269 TIGR02633 xylG D-xylose ABC tr 98.8 1.4E-09 3.1E-14 75.7 0.5 44 35-78 8-53 (500)
270 cd03288 ABCC_SUR2 The SUR doma 98.8 1.9E-09 4.2E-14 69.5 1.0 39 41-79 34-74 (257)
271 PRK10771 thiQ thiamine transpo 98.8 3.9E-09 8.4E-14 67.1 2.3 34 46-79 17-52 (232)
272 COG0488 Uup ATPase components 98.8 2.7E-09 5.9E-14 75.3 1.7 46 34-79 9-56 (530)
273 PRK11176 lipid transporter ATP 98.8 3.3E-09 7.1E-14 74.9 2.1 39 41-79 356-396 (582)
274 cd03299 ABC_ModC_like Archeal 98.8 2E-09 4.4E-14 68.6 1.0 37 43-79 14-52 (235)
275 COG3638 ABC-type phosphate/pho 98.8 2.2E-09 4.7E-14 69.2 1.1 41 39-79 15-57 (258)
276 PRK13634 cbiO cobalt transport 98.8 2.6E-09 5.5E-14 70.2 1.5 38 42-79 21-60 (290)
277 PRK11819 putative ABC transpor 98.8 1.7E-09 3.7E-14 76.4 0.6 45 35-79 331-377 (556)
278 PRK13631 cbiO cobalt transport 98.8 2.9E-09 6.3E-14 71.0 1.7 38 42-79 40-79 (320)
279 PRK14263 phosphate ABC transpo 98.8 8.9E-10 1.9E-14 71.4 -0.8 41 38-78 18-60 (261)
280 PRK13546 teichoic acids export 98.8 2.9E-09 6.4E-14 69.3 1.6 39 41-79 37-77 (264)
281 PRK09700 D-allose transporter 98.8 3.3E-09 7.2E-14 74.1 2.0 37 43-79 278-316 (510)
282 cd03236 ABC_RNaseL_inhibitor_d 98.8 7E-09 1.5E-13 67.3 3.3 37 42-79 15-53 (255)
283 cd03291 ABCC_CFTR1 The CFTR su 98.8 3.3E-09 7.1E-14 69.7 1.7 39 41-79 50-90 (282)
284 TIGR03796 NHPM_micro_ABC1 NHPM 98.8 3.7E-09 8E-14 76.2 2.1 39 41-79 492-532 (710)
285 COG0411 LivG ABC-type branched 98.8 2.6E-10 5.7E-15 73.5 -3.4 47 34-80 10-58 (250)
286 PRK11607 potG putrescine trans 98.8 1.3E-09 2.8E-14 74.2 -0.2 45 35-79 26-72 (377)
287 COG0410 LivF ABC-type branched 98.7 2E-09 4.4E-14 69.0 0.5 45 34-78 9-55 (237)
288 cd03232 ABC_PDR_domain2 The pl 98.7 1.5E-09 3.3E-14 67.4 -0.1 36 41-76 20-57 (192)
289 TIGR03797 NHPM_micro_ABC2 NHPM 98.7 3.7E-09 7.9E-14 76.1 1.8 39 41-79 466-506 (686)
290 PRK14266 phosphate ABC transpo 98.7 1.9E-09 4E-14 69.2 0.3 40 38-77 13-54 (250)
291 PRK11288 araG L-arabinose tran 98.7 1.9E-09 4.1E-14 75.2 0.1 45 35-79 11-57 (501)
292 cd00267 ABC_ATPase ABC (ATP-bi 98.7 2.1E-09 4.4E-14 64.7 0.2 38 42-79 13-52 (157)
293 PRK10789 putative multidrug tr 98.7 5.2E-09 1.1E-13 74.0 2.2 39 41-79 328-368 (569)
294 PRK13642 cbiO cobalt transport 98.7 4.2E-09 9.1E-14 68.7 1.6 37 43-79 22-60 (277)
295 TIGR03415 ABC_choXWV_ATP choli 98.7 2.5E-09 5.4E-14 73.0 0.5 42 38-79 34-77 (382)
296 PRK14275 phosphate ABC transpo 98.7 1.7E-09 3.8E-14 70.9 -0.3 44 34-77 45-90 (286)
297 TIGR01193 bacteriocin_ABC ABC- 98.7 4.1E-09 9E-14 76.0 1.6 46 34-79 479-527 (708)
298 TIGR02857 CydD thiol reductant 98.7 6E-09 1.3E-13 72.9 2.2 38 42-79 336-375 (529)
299 PRK11022 dppD dipeptide transp 98.7 5.2E-09 1.1E-13 69.9 1.8 37 42-78 21-59 (326)
300 PRK10938 putative molybdenum t 98.7 2.2E-09 4.7E-14 74.7 -0.1 44 34-77 266-311 (490)
301 PRK11144 modC molybdate transp 98.7 6.5E-09 1.4E-13 70.1 2.1 34 46-79 16-51 (352)
302 PRK03695 vitamin B12-transport 98.7 5.3E-09 1.1E-13 67.3 1.6 35 43-77 11-47 (248)
303 PRK14264 phosphate ABC transpo 98.7 3.2E-09 6.9E-14 70.3 0.6 44 34-77 51-96 (305)
304 TIGR02314 ABC_MetN D-methionin 98.7 5E-09 1.1E-13 70.6 1.5 38 42-79 19-58 (343)
305 CHL00206 ycf2 Ycf2; Provisiona 98.7 1.8E-08 3.9E-13 78.8 4.6 39 41-79 1619-1657(2281)
306 TIGR01277 thiQ thiamine ABC tr 98.7 7.3E-09 1.6E-13 65.1 2.1 36 44-79 14-51 (213)
307 cd03289 ABCC_CFTR2 The CFTR su 98.7 6.2E-09 1.3E-13 68.2 1.7 37 41-77 17-55 (275)
308 PRK11288 araG L-arabinose tran 98.7 5.6E-09 1.2E-13 72.9 1.5 38 42-79 267-306 (501)
309 PF13207 AAA_17: AAA domain; P 98.7 1.8E-08 3.8E-13 57.9 3.4 24 55-78 2-25 (121)
310 PRK10070 glycine betaine trans 98.7 5.2E-09 1.1E-13 71.8 1.3 37 43-79 43-81 (400)
311 COG1132 MdlB ABC-type multidru 98.7 7.1E-09 1.5E-13 73.2 2.0 46 34-79 334-382 (567)
312 PRK15079 oligopeptide ABC tran 98.7 5.1E-09 1.1E-13 70.2 1.1 38 42-79 35-74 (331)
313 PRK13549 xylose transporter AT 98.7 6.5E-09 1.4E-13 72.6 1.7 37 41-77 275-313 (506)
314 TIGR02633 xylG D-xylose ABC tr 98.7 6.4E-09 1.4E-13 72.5 1.6 38 41-78 273-312 (500)
315 PRK10261 glutathione transport 98.7 5.5E-09 1.2E-13 74.8 1.3 38 42-79 30-69 (623)
316 PRK13657 cyclic beta-1,2-gluca 98.7 5.5E-09 1.2E-13 74.0 1.3 39 41-79 348-388 (588)
317 TIGR00958 3a01208 Conjugate Tr 98.7 9E-09 1.9E-13 74.5 2.4 39 41-79 494-534 (711)
318 TIGR02142 modC_ABC molybdenum 98.7 8.9E-09 1.9E-13 69.4 2.2 34 46-79 15-50 (354)
319 PRK11308 dppF dipeptide transp 98.7 7E-09 1.5E-13 69.4 1.7 38 42-79 29-68 (327)
320 TIGR03375 type_I_sec_LssB type 98.7 7.1E-09 1.5E-13 74.7 1.8 39 41-79 478-518 (694)
321 COG1122 CbiO ABC-type cobalt t 98.7 5.1E-09 1.1E-13 67.4 0.9 38 42-79 18-57 (235)
322 PRK11160 cysteine/glutathione 98.7 9.3E-09 2E-13 72.9 2.1 39 41-79 353-393 (574)
323 PRK15134 microcin C ABC transp 98.7 6.9E-09 1.5E-13 72.8 1.4 37 42-78 23-61 (529)
324 TIGR02204 MsbA_rel ABC transpo 98.7 1.1E-08 2.4E-13 72.1 2.4 39 41-79 353-393 (576)
325 PLN03073 ABC transporter F fam 98.7 2.6E-09 5.6E-14 77.6 -0.8 42 34-75 183-226 (718)
326 COG4604 CeuD ABC-type enteroch 98.7 1.1E-08 2.4E-13 65.0 1.9 45 34-78 7-53 (252)
327 cd03237 ABC_RNaseL_inhibitor_d 98.7 2.5E-08 5.5E-13 64.3 3.6 25 55-79 28-52 (246)
328 PRK15093 antimicrobial peptide 98.7 1.1E-08 2.4E-13 68.4 2.0 36 42-77 21-58 (330)
329 PRK09473 oppD oligopeptide tra 98.7 9E-09 1.9E-13 68.9 1.5 37 42-78 30-68 (330)
330 PRK10762 D-ribose transporter 98.7 1.1E-08 2.4E-13 71.4 2.1 37 43-79 267-305 (501)
331 TIGR01842 type_I_sec_PrtD type 98.7 1.1E-08 2.5E-13 71.9 2.1 39 41-79 331-371 (544)
332 TIGR02203 MsbA_lipidA lipid A 98.7 1.3E-08 2.9E-13 71.6 2.4 39 41-79 345-385 (571)
333 PRK11174 cysteine/glutathione 98.7 8.5E-09 1.8E-13 73.0 1.4 39 40-79 362-402 (588)
334 COG2255 RuvB Holliday junction 98.7 2.7E-08 6E-13 65.8 3.7 27 54-80 54-80 (332)
335 TIGR03269 met_CoM_red_A2 methy 98.6 8.1E-09 1.8E-13 72.3 1.2 38 42-79 298-337 (520)
336 COG4555 NatA ABC-type Na+ tran 98.6 2.9E-08 6.3E-13 63.2 3.5 46 34-79 7-55 (245)
337 PRK10790 putative multidrug tr 98.6 1.2E-08 2.5E-13 72.4 1.9 39 41-79 354-394 (592)
338 KOG0927|consensus 98.6 5.5E-09 1.2E-13 73.7 0.3 69 10-79 372-443 (614)
339 COG4167 SapF ABC-type antimicr 98.6 1.6E-08 3.5E-13 63.9 2.3 39 42-80 27-67 (267)
340 PLN03073 ABC transporter F fam 98.6 9.7E-09 2.1E-13 74.7 1.5 46 34-79 514-562 (718)
341 PRK10522 multidrug transporter 98.6 1.3E-08 2.7E-13 71.8 2.0 38 42-79 337-376 (547)
342 PRK15439 autoinducer 2 ABC tra 98.6 1.2E-08 2.6E-13 71.5 1.8 37 43-79 278-316 (510)
343 TIGR00635 ruvB Holliday juncti 98.6 5.4E-08 1.2E-12 63.9 4.8 55 16-78 2-56 (305)
344 COG0396 sufC Cysteine desulfur 98.6 1.8E-08 3.9E-13 64.9 2.4 42 35-76 10-54 (251)
345 TIGR03771 anch_rpt_ABC anchore 98.6 3.1E-08 6.7E-13 62.8 3.4 29 51-79 3-33 (223)
346 PLN03211 ABC transporter G-25; 98.6 9E-09 2E-13 74.2 1.1 43 36-78 76-120 (659)
347 TIGR01192 chvA glucan exporter 98.6 1.2E-08 2.5E-13 72.5 1.6 46 34-79 340-388 (585)
348 PRK10982 galactose/methyl gala 98.6 1.1E-08 2.5E-13 71.1 1.4 38 42-79 262-301 (491)
349 PRK10261 glutathione transport 98.6 1.4E-08 3E-13 72.7 1.8 38 42-79 338-377 (623)
350 COG4608 AppF ABC-type oligopep 98.6 1.8E-08 3.9E-13 65.9 2.0 38 42-79 27-66 (268)
351 PRK13409 putative ATPase RIL; 98.6 1.7E-08 3.6E-13 72.1 2.0 47 32-79 77-126 (590)
352 PRK15134 microcin C ABC transp 98.6 1.6E-08 3.5E-13 71.0 1.8 37 41-77 299-337 (529)
353 TIGR01846 type_I_sec_HlyB type 98.6 2E-08 4.4E-13 72.4 2.3 46 34-79 461-510 (694)
354 TIGR01194 cyc_pep_trnsptr cycl 98.6 1.9E-08 4E-13 71.1 1.9 38 42-79 356-395 (555)
355 cd01130 VirB11-like_ATPase Typ 98.6 6.4E-08 1.4E-12 59.9 3.9 26 54-79 27-52 (186)
356 PRK08118 topology modulation p 98.6 5.8E-08 1.2E-12 59.5 3.6 26 54-79 3-28 (167)
357 COG1123 ATPase components of v 98.6 2.6E-08 5.7E-13 70.3 2.2 38 42-79 305-344 (539)
358 TIGR00954 3a01203 Peroxysomal 98.6 2.1E-08 4.5E-13 72.3 1.7 39 41-79 465-505 (659)
359 smart00382 AAA ATPases associa 98.6 7.1E-08 1.5E-12 55.0 3.5 27 53-79 3-29 (148)
360 PRK14962 DNA polymerase III su 98.6 1.2E-07 2.7E-12 66.2 5.3 55 11-77 7-61 (472)
361 cd03278 ABC_SMC_barmotin Barmo 98.6 3.3E-08 7.2E-13 61.9 2.2 33 45-77 14-47 (197)
362 cd03297 ABC_ModC_molybdenum_tr 98.6 4.5E-08 9.7E-13 61.5 2.7 34 46-79 16-50 (214)
363 TIGR00390 hslU ATP-dependent p 98.6 1.2E-07 2.6E-12 65.6 4.9 60 20-79 14-74 (441)
364 PRK14257 phosphate ABC transpo 98.6 2.2E-08 4.8E-13 67.1 1.2 36 42-77 96-133 (329)
365 COG2256 MGS1 ATPase related to 98.6 1.1E-07 2.4E-12 65.2 4.5 27 52-78 48-74 (436)
366 PRK04195 replication factor C 98.5 1.1E-07 2.4E-12 66.4 4.6 59 11-78 7-65 (482)
367 COG4988 CydD ABC-type transpor 98.5 2.8E-08 6.1E-13 70.3 1.6 46 34-79 326-374 (559)
368 PRK13545 tagH teichoic acids e 98.5 2.2E-08 4.7E-13 70.9 1.0 38 42-79 38-77 (549)
369 COG3840 ThiQ ABC-type thiamine 98.5 6.5E-08 1.4E-12 60.9 2.9 33 47-79 18-52 (231)
370 cd00820 PEPCK_HprK Phosphoenol 98.5 3.1E-08 6.8E-13 57.0 1.3 30 44-73 5-36 (107)
371 PRK00080 ruvB Holliday junctio 98.5 1.7E-07 3.6E-12 62.5 4.8 58 13-78 20-77 (328)
372 COG1129 MglA ABC-type sugar tr 98.5 3.8E-08 8.3E-13 69.0 1.7 46 34-79 14-61 (500)
373 PTZ00265 multidrug resistance 98.5 4.1E-08 8.8E-13 75.8 2.0 38 41-78 1181-1220(1466)
374 COG4586 ABC-type uncharacteriz 98.5 1.1E-07 2.3E-12 62.9 3.6 39 41-79 37-77 (325)
375 TIGR00235 udk uridine kinase. 98.5 1.3E-07 2.8E-12 59.3 3.9 27 51-77 3-31 (207)
376 COG4152 ABC-type uncharacteriz 98.5 2.3E-08 4.9E-13 65.2 0.4 46 34-79 8-55 (300)
377 KOG0055|consensus 98.5 7.9E-08 1.7E-12 72.7 3.2 39 41-79 366-406 (1228)
378 PRK14961 DNA polymerase III su 98.5 2.3E-07 4.9E-12 62.8 5.2 55 11-77 9-63 (363)
379 cd03283 ABC_MutS-like MutS-lik 98.5 6.2E-08 1.3E-12 60.8 2.2 34 42-75 15-48 (199)
380 PF05673 DUF815: Protein of un 98.5 2.4E-07 5.2E-12 60.1 4.9 62 9-79 18-79 (249)
381 PRK13409 putative ATPase RIL; 98.5 5.1E-08 1.1E-12 69.7 2.0 36 44-79 355-392 (590)
382 PRK07261 topology modulation p 98.5 1.4E-07 2.9E-12 58.0 3.5 25 55-79 3-27 (171)
383 PLN03025 replication factor C 98.5 3.3E-07 7.1E-12 61.0 5.6 54 10-76 5-58 (319)
384 smart00763 AAA_PrkA PrkA AAA d 98.5 2.7E-07 5.8E-12 62.7 5.2 52 19-78 52-104 (361)
385 PTZ00265 multidrug resistance 98.5 7.1E-08 1.5E-12 74.5 2.6 46 34-79 388-438 (1466)
386 KOG0057|consensus 98.5 6.1E-08 1.3E-12 68.5 2.0 43 36-78 359-404 (591)
387 KOG0055|consensus 98.5 1.5E-07 3.1E-12 71.4 3.7 40 41-80 1003-1044(1228)
388 PRK14956 DNA polymerase III su 98.5 3.2E-07 7E-12 64.3 5.2 56 10-77 10-65 (484)
389 PRK10078 ribose 1,5-bisphospho 98.5 1.4E-07 3E-12 58.3 3.0 24 55-78 5-28 (186)
390 KOG0060|consensus 98.5 7.6E-08 1.6E-12 68.5 2.0 39 40-78 447-487 (659)
391 PF13671 AAA_33: AAA domain; P 98.5 1.7E-07 3.7E-12 55.0 3.2 23 55-77 2-24 (143)
392 COG0563 Adk Adenylate kinase a 98.5 2E-07 4.2E-12 57.9 3.5 25 55-79 3-27 (178)
393 KOG0064|consensus 98.5 7.4E-08 1.6E-12 68.4 1.8 36 43-78 497-534 (728)
394 TIGR01360 aden_kin_iso1 adenyl 98.5 2E-07 4.4E-12 57.0 3.5 24 55-78 6-29 (188)
395 PLN03140 ABC transporter G fam 98.4 7.5E-08 1.6E-12 74.4 1.7 40 40-79 177-218 (1470)
396 COG4107 PhnK ABC-type phosphon 98.4 1.1E-07 2.4E-12 59.8 2.1 46 34-79 12-59 (258)
397 PRK03839 putative kinase; Prov 98.4 2.3E-07 5E-12 56.9 3.5 25 55-79 3-27 (180)
398 cd03273 ABC_SMC2_euk Eukaryoti 98.4 1.2E-07 2.6E-12 61.0 2.3 27 52-78 24-51 (251)
399 TIGR00955 3a01204 The Eye Pigm 98.4 8.2E-08 1.8E-12 68.8 1.6 39 40-78 37-77 (617)
400 cd00009 AAA The AAA+ (ATPases 98.4 5.1E-07 1.1E-11 51.9 4.7 25 52-76 19-43 (151)
401 TIGR01359 UMP_CMP_kin_fam UMP- 98.4 2.5E-07 5.3E-12 56.6 3.4 25 55-79 2-26 (183)
402 COG4618 ArpD ABC-type protease 98.4 1.1E-07 2.4E-12 66.9 2.0 39 41-79 349-389 (580)
403 COG4178 ABC-type uncharacteriz 98.4 1.2E-07 2.5E-12 67.9 2.1 38 41-78 406-445 (604)
404 PRK14530 adenylate kinase; Pro 98.4 2.6E-07 5.6E-12 58.3 3.4 26 54-79 5-30 (215)
405 PRK14964 DNA polymerase III su 98.4 5.4E-07 1.2E-11 63.4 5.3 54 11-76 6-59 (491)
406 PRK06645 DNA polymerase III su 98.4 6.2E-07 1.3E-11 63.3 5.5 56 10-77 13-68 (507)
407 KOG0744|consensus 98.4 1.7E-07 3.7E-12 63.2 2.6 28 50-77 175-202 (423)
408 PRK00131 aroK shikimate kinase 98.4 4.2E-07 9.1E-12 54.8 4.1 28 52-79 4-31 (175)
409 PLN03232 ABC transporter C fam 98.4 1.4E-07 3.1E-12 72.9 2.5 46 34-79 1240-1289(1495)
410 PRK06893 DNA replication initi 98.4 2.6E-07 5.7E-12 59.0 3.2 24 53-76 40-63 (229)
411 PRK12402 replication factor C 98.4 7.1E-07 1.5E-11 59.0 5.4 53 12-77 9-61 (337)
412 PF07728 AAA_5: AAA domain (dy 98.4 3.1E-07 6.6E-12 54.0 3.3 24 55-78 2-25 (139)
413 COG4136 ABC-type uncharacteriz 98.4 8.4E-08 1.8E-12 59.0 0.8 45 34-78 8-54 (213)
414 PRK14955 DNA polymerase III su 98.4 7.4E-07 1.6E-11 61.0 5.5 55 11-77 9-63 (397)
415 TIGR02322 phosphon_PhnN phosph 98.4 3.7E-07 8.1E-12 55.8 3.6 24 55-78 4-27 (179)
416 PRK10535 macrolide transporter 98.4 1.2E-07 2.5E-12 68.3 1.6 38 42-79 22-61 (648)
417 PRK14963 DNA polymerase III su 98.4 6.5E-07 1.4E-11 63.1 5.2 56 10-77 6-61 (504)
418 PHA02544 44 clamp loader, smal 98.4 1E-06 2.2E-11 58.1 5.8 56 10-77 13-68 (316)
419 PRK13949 shikimate kinase; Pro 98.4 3.9E-07 8.5E-12 55.9 3.5 26 54-79 3-28 (169)
420 PRK05342 clpX ATP-dependent pr 98.4 6E-07 1.3E-11 62.0 4.7 26 53-78 109-134 (412)
421 PRK14949 DNA polymerase III su 98.4 5.5E-07 1.2E-11 67.0 4.8 55 11-77 9-63 (944)
422 COG0444 DppD ABC-type dipeptid 98.4 2.5E-07 5.4E-12 61.8 2.7 36 42-77 19-56 (316)
423 PRK14532 adenylate kinase; Pro 98.4 3.7E-07 8E-12 56.3 3.3 25 55-79 3-27 (188)
424 cd03272 ABC_SMC3_euk Eukaryoti 98.4 4E-07 8.7E-12 58.1 3.6 22 55-76 26-47 (243)
425 PTZ00243 ABC transporter; Prov 98.4 1.2E-07 2.6E-12 73.6 1.3 39 41-79 673-713 (1560)
426 PRK05201 hslU ATP-dependent pr 98.4 4.5E-07 9.8E-12 62.9 3.9 60 20-79 17-77 (443)
427 PLN03130 ABC transporter C fam 98.4 2E-07 4.4E-12 72.6 2.5 39 41-79 630-670 (1622)
428 PRK14960 DNA polymerase III su 98.4 7.4E-07 1.6E-11 64.6 5.1 55 11-77 8-62 (702)
429 PRK14531 adenylate kinase; Pro 98.4 5.2E-07 1.1E-11 55.7 3.9 27 53-79 3-29 (183)
430 PLN03232 ABC transporter C fam 98.4 1.5E-07 3.3E-12 72.8 1.8 38 42-79 631-670 (1495)
431 COG4778 PhnL ABC-type phosphon 98.4 2.3E-07 5.1E-12 58.0 2.2 38 42-79 25-64 (235)
432 COG4598 HisP ABC-type histidin 98.4 3.7E-07 7.9E-12 57.7 3.0 41 34-74 12-54 (256)
433 KOG0066|consensus 98.4 3.8E-07 8.2E-12 64.1 3.4 47 34-80 592-641 (807)
434 cd03270 ABC_UvrA_I The excisio 98.4 2.1E-07 4.5E-12 59.3 2.0 28 42-69 9-38 (226)
435 TIGR01271 CFTR_protein cystic 98.4 1.7E-07 3.7E-12 72.5 1.8 38 42-79 440-479 (1490)
436 PF03215 Rad17: Rad17 cell cyc 98.4 1.1E-06 2.5E-11 62.1 5.8 24 55-78 48-71 (519)
437 KOG0062|consensus 98.4 2.1E-07 4.5E-12 65.6 2.1 42 33-74 85-128 (582)
438 cd00464 SK Shikimate kinase (S 98.4 5.4E-07 1.2E-11 53.5 3.6 25 55-79 2-26 (154)
439 TIGR03238 dnd_assoc_3 dnd syst 98.4 3E-07 6.5E-12 64.5 2.7 29 42-70 20-50 (504)
440 TIGR00957 MRP_assoc_pro multi 98.3 1.8E-07 3.8E-12 72.6 1.7 38 42-79 652-691 (1522)
441 PRK14958 DNA polymerase III su 98.3 7.5E-07 1.6E-11 62.9 4.7 55 11-77 9-63 (509)
442 PRK00300 gmk guanylate kinase; 98.3 4.8E-07 1E-11 56.3 3.4 23 55-77 8-30 (205)
443 PRK06620 hypothetical protein; 98.3 4.6E-07 9.9E-12 57.6 3.3 25 53-77 45-69 (214)
444 KOG0989|consensus 98.3 1.2E-06 2.6E-11 58.6 5.3 53 13-78 31-83 (346)
445 cd01131 PilT Pilus retraction 98.3 5.1E-07 1.1E-11 56.5 3.4 24 55-78 4-27 (198)
446 cd02020 CMPK Cytidine monophos 98.3 6.2E-07 1.3E-11 52.7 3.6 25 55-79 2-26 (147)
447 PRK09825 idnK D-gluconate kina 98.3 5.5E-07 1.2E-11 55.6 3.4 24 55-78 6-29 (176)
448 TIGR00150 HI0065_YjeE ATPase, 98.3 1E-06 2.2E-11 52.5 4.3 25 55-79 25-49 (133)
449 PF01078 Mg_chelatase: Magnesi 98.3 1.5E-06 3.2E-11 55.1 5.2 48 16-78 1-48 (206)
450 PRK07940 DNA polymerase III su 98.3 1.3E-06 2.8E-11 60.0 5.3 58 16-76 3-60 (394)
451 PRK06217 hypothetical protein; 98.3 6.6E-07 1.4E-11 55.2 3.5 25 55-79 4-28 (183)
452 TIGR00602 rad24 checkpoint pro 98.3 1.2E-06 2.6E-11 63.2 5.2 24 55-78 113-136 (637)
453 PRK14957 DNA polymerase III su 98.3 1.1E-06 2.4E-11 62.5 4.9 54 12-77 10-63 (546)
454 cd01428 ADK Adenylate kinase ( 98.3 7E-07 1.5E-11 54.9 3.4 24 55-78 2-25 (194)
455 TIGR00382 clpX endopeptidase C 98.3 9.8E-07 2.1E-11 61.0 4.4 26 53-78 117-142 (413)
456 PRK13947 shikimate kinase; Pro 98.3 7.8E-07 1.7E-11 53.9 3.6 26 54-79 3-28 (171)
457 PRK02496 adk adenylate kinase; 98.3 8E-07 1.7E-11 54.6 3.5 24 55-78 4-27 (184)
458 PF13555 AAA_29: P-loop contai 98.3 1.1E-06 2.4E-11 46.0 3.5 22 55-76 26-47 (62)
459 PF00485 PRK: Phosphoribulokin 98.3 8.6E-07 1.9E-11 55.1 3.7 24 55-78 2-25 (194)
460 TIGR03263 guanyl_kin guanylate 98.3 5.7E-07 1.2E-11 54.9 2.8 22 55-76 4-25 (180)
461 PRK05480 uridine/cytidine kina 98.3 7E-07 1.5E-11 56.0 3.2 22 55-76 9-30 (209)
462 cd02021 GntK Gluconate kinase 98.3 7.9E-07 1.7E-11 52.9 3.3 24 55-78 2-25 (150)
463 cd02023 UMPK Uridine monophosp 98.3 7.3E-07 1.6E-11 55.4 3.2 22 55-76 2-23 (198)
464 COG4181 Predicted ABC-type tra 98.3 4.1E-07 9E-12 56.9 2.1 40 39-78 21-62 (228)
465 PRK08691 DNA polymerase III su 98.3 1.3E-06 2.8E-11 63.6 4.9 56 10-77 8-63 (709)
466 TIGR01351 adk adenylate kinase 98.3 8.3E-07 1.8E-11 55.8 3.5 25 55-79 2-26 (210)
467 PRK14527 adenylate kinase; Pro 98.3 1.3E-06 2.7E-11 54.2 4.2 25 55-79 9-33 (191)
468 KOG0056|consensus 98.3 4.3E-07 9.3E-12 64.4 2.3 46 34-79 543-591 (790)
469 PRK14969 DNA polymerase III su 98.3 1.4E-06 3.1E-11 61.7 4.9 54 12-77 10-63 (527)
470 PRK08233 hypothetical protein; 98.3 8.2E-07 1.8E-11 54.0 3.2 23 55-77 6-28 (182)
471 cd02025 PanK Pantothenate kina 98.3 7.5E-07 1.6E-11 56.8 3.1 23 55-77 2-24 (220)
472 TIGR01257 rim_protein retinal- 98.3 1.8E-07 4E-12 74.2 0.3 39 41-79 1952-1992(2272)
473 PRK09183 transposase/IS protei 98.3 8.4E-07 1.8E-11 57.8 3.4 23 54-76 104-126 (259)
474 PRK05057 aroK shikimate kinase 98.3 1.3E-06 2.8E-11 53.6 4.0 26 53-78 5-30 (172)
475 PRK00440 rfc replication facto 98.3 2.6E-06 5.6E-11 55.9 5.6 53 11-76 10-62 (319)
476 cd02019 NK Nucleoside/nucleoti 98.3 1.1E-06 2.5E-11 46.5 3.3 22 55-76 2-23 (69)
477 COG1101 PhnK ABC-type uncharac 98.3 8.7E-07 1.9E-11 57.0 3.3 39 41-79 19-59 (263)
478 TIGR00763 lon ATP-dependent pr 98.3 1.1E-06 2.5E-11 64.4 4.3 25 54-78 349-373 (775)
479 COG4138 BtuD ABC-type cobalami 98.3 8.5E-07 1.8E-11 55.8 3.1 35 45-79 16-52 (248)
480 PRK13342 recombination factor 98.3 1.6E-06 3.5E-11 59.6 4.7 26 53-78 37-62 (413)
481 TIGR00957 MRP_assoc_pro multi 98.3 3.9E-07 8.5E-12 70.7 1.9 39 41-79 1299-1339(1522)
482 PLN03130 ABC transporter C fam 98.3 3.8E-07 8.3E-12 71.1 1.8 38 42-79 1253-1292(1622)
483 PRK06762 hypothetical protein; 98.3 1.1E-06 2.4E-11 53.1 3.5 24 54-77 4-27 (166)
484 TIGR02397 dnaX_nterm DNA polym 98.3 2.2E-06 4.7E-11 57.2 5.2 56 10-77 6-61 (355)
485 COG1102 Cmk Cytidylate kinase 98.3 8.5E-07 1.8E-11 54.6 2.9 25 55-79 3-27 (179)
486 PTZ00088 adenylate kinase 1; P 98.3 1.1E-06 2.3E-11 56.5 3.5 26 54-79 8-33 (229)
487 PRK05896 DNA polymerase III su 98.3 1.9E-06 4E-11 62.0 5.0 55 11-77 9-63 (605)
488 cd03280 ABC_MutS2 MutS2 homolo 98.3 6.9E-07 1.5E-11 55.8 2.5 27 47-73 20-49 (200)
489 TIGR00956 3a01205 Pleiotropic 98.2 2.8E-07 6E-12 71.1 0.8 37 40-76 73-111 (1394)
490 PRK00625 shikimate kinase; Pro 98.2 1.3E-06 2.7E-11 54.0 3.6 25 55-79 3-27 (173)
491 PTZ00243 ABC transporter; Prov 98.2 4.1E-07 9E-12 70.7 1.7 39 41-79 1323-1363(1560)
492 PRK08084 DNA replication initi 98.2 1E-06 2.2E-11 56.5 3.3 25 53-77 46-70 (235)
493 cd00071 GMPK Guanosine monopho 98.2 1.1E-06 2.3E-11 52.2 3.1 23 55-77 2-24 (137)
494 cd03243 ABC_MutS_homologs The 98.2 8E-07 1.7E-11 55.6 2.7 21 54-74 31-51 (202)
495 PRK14970 DNA polymerase III su 98.2 3.4E-06 7.3E-11 56.9 5.8 55 11-77 10-64 (367)
496 PRK14954 DNA polymerase III su 98.2 2.2E-06 4.8E-11 61.8 5.0 55 11-77 9-63 (620)
497 PRK00279 adk adenylate kinase; 98.2 1.4E-06 3E-11 55.0 3.5 25 55-79 3-27 (215)
498 PRK09270 nucleoside triphospha 98.2 1.2E-06 2.6E-11 55.8 3.3 24 55-78 36-59 (229)
499 cd03274 ABC_SMC4_euk Eukaryoti 98.2 1.1E-06 2.4E-11 55.7 3.1 22 55-76 28-49 (212)
500 PRK14952 DNA polymerase III su 98.2 2.4E-06 5.2E-11 61.2 5.1 55 11-77 6-60 (584)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.2e-19 Score=119.41 Aligned_cols=71 Identities=66% Similarity=1.120 Sum_probs=68.0
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+.|+++|++++|++.+...+.+.+..++.++++|+.+|+..++|++||||||||||.|++++|.+++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At 212 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT 212 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce
Confidence 56789999999999999999999999999999999999999999999999999999999999999998765
No 2
>KOG0727|consensus
Probab=99.69 E-value=8.7e-17 Score=104.93 Aligned_cols=70 Identities=87% Similarity=1.351 Sum_probs=66.4
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++++|+++|.+++|++.++..+.+.++.++.+.++++.++++.++|+++|||||||||+|++++|....+
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a 215 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 215 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch
Confidence 5778999999999999999999999999999999999999999999999999999999999999987654
No 3
>KOG0730|consensus
Probab=99.68 E-value=1.2e-16 Score=113.06 Aligned_cols=71 Identities=52% Similarity=0.978 Sum_probs=67.5
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+.+.++|++|+|++..+..+++.+.|++.+++.|.++++..++||++|||||||||++++++|.+.+.|
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999998876
No 4
>KOG0733|consensus
Probab=99.65 E-value=4.7e-16 Score=109.87 Aligned_cols=73 Identities=47% Similarity=0.810 Sum_probs=68.1
Q ss_pred CCCCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 7 TKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.-...|+++|+++++++..+.++..++.++++++++|+.+|+..+.|++|+||||||||.|++++|++.++|
T Consensus 500 EGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~N 572 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN 572 (802)
T ss_pred ccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCc
Confidence 3344579999999999999999999999999999999999999999999999999999999999999998876
No 5
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.62 E-value=1.7e-15 Score=103.35 Aligned_cols=70 Identities=84% Similarity=1.300 Sum_probs=65.5
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|+++|++++|++.++..+.+.+.+++.+++++..+++..++|++|+||||||||++++++|++++.+
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999987653
No 6
>KOG0733|consensus
Probab=99.58 E-value=4e-15 Score=105.30 Aligned_cols=68 Identities=46% Similarity=0.844 Sum_probs=61.5
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+.++|.+++|++.....+-+.+. ++.+++.|..+|+..++|++|+||||||||+|+++||++++++
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~-~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELII-HIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHH-HhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 3457889999999999998888544 4999999999999999999999999999999999999999876
No 7
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.54 E-value=2e-14 Score=99.06 Aligned_cols=70 Identities=64% Similarity=1.082 Sum_probs=64.8
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.|..+|++++|++.++..+.+.+..++.+++++.++++..+++++|+||||||||+++++|++++..
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4567889999999999999999999999999999999999999999999999999999999999998764
No 8
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.52 E-value=3.1e-14 Score=96.78 Aligned_cols=69 Identities=62% Similarity=1.113 Sum_probs=64.1
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+.+++.|++++|++.++..+.+.+..++.+++++..+++..+++++|+||||||||+++++++.+++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 456789999999999999999999999999999999999999999999999999999999999998764
No 9
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.51 E-value=3.3e-14 Score=99.43 Aligned_cols=68 Identities=60% Similarity=1.144 Sum_probs=63.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+.|+++|++++|++..+..+.+.+..++.++++|..+++..++|++|+||||||||++++++++++.
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 45688999999999999999999999999999999999999999999999999999999999999875
No 10
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.51 E-value=6.1e-14 Score=94.41 Aligned_cols=69 Identities=65% Similarity=1.188 Sum_probs=63.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+.+.+.|++++|++..+..+.+.+..++.++.++..+++..++|++|+||||||||+++++++++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~ 182 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 182 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC
Confidence 356889999999999999999999999999999999999999999999999999999999999998764
No 11
>KOG0728|consensus
Probab=99.50 E-value=5e-14 Score=92.03 Aligned_cols=69 Identities=57% Similarity=1.036 Sum_probs=64.9
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..+.|+.+|+.+++++.+.+.+++.+..+..++++|+.+++..++|++||||||+|||.|+++++.+.+
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~ 206 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD 206 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc
Confidence 456789999999999999999999999999999999999999999999999999999999999997754
No 12
>KOG0726|consensus
Probab=99.50 E-value=6.2e-14 Score=93.00 Aligned_cols=70 Identities=57% Similarity=1.033 Sum_probs=64.9
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.++.|.-+|.+++|++.+...+++.+..++.++++++..++..++|++|||+||+|||.|++++|+...+
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA 245 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA 245 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch
Confidence 4566777899999999999999999999999999999999999999999999999999999999987654
No 13
>KOG0731|consensus
Probab=99.50 E-value=5.7e-14 Score=101.26 Aligned_cols=69 Identities=41% Similarity=0.700 Sum_probs=63.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+....|.|.++.|.+..+..+.+ +...+.+++.|.++|..+++|++|+||||||||.|++++|++.+++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP 371 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP 371 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc
Confidence 34456999999999999999999 6677899999999999999999999999999999999999999875
No 14
>KOG0736|consensus
Probab=99.49 E-value=6e-14 Score=101.16 Aligned_cols=70 Identities=44% Similarity=0.844 Sum_probs=61.5
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+.|.++|+|++|++..+..+.+.+..++.++++|. .++..+.||+||||||||||.+++++|.++..+
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceee
Confidence 3567899999999999999999999999999999985 445556679999999999999999999887653
No 15
>KOG0652|consensus
Probab=99.47 E-value=2e-13 Score=89.73 Aligned_cols=70 Identities=57% Similarity=1.011 Sum_probs=64.4
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.++.|.-+|.+++|++.+...+.+.+..++.+++-|+++++..++|+++|||||+|||.++++-|...+.
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 4567778899999999999999999999999999999999999999999999999999999998876654
No 16
>KOG0729|consensus
Probab=99.47 E-value=1.7e-13 Score=90.28 Aligned_cols=70 Identities=59% Similarity=1.025 Sum_probs=66.1
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++|+++|.+++|...+...+.+.++.++.+++-|-++++..++|+++|||||+|||..++++|++.++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999988765
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.44 E-value=3e-13 Score=97.74 Aligned_cols=69 Identities=58% Similarity=1.040 Sum_probs=64.0
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.++|+++++++..+..+.+.+.+++.+++++..+++..++|++|+||||||||++++++|.+++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 356789999999999999999999999999999999999999999999999999999999999998764
No 18
>KOG0743|consensus
Probab=99.41 E-value=4.1e-13 Score=92.19 Aligned_cols=65 Identities=29% Similarity=0.454 Sum_probs=59.3
Q ss_pred CCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 14 DVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 14 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+.+|+++.--...+..+.+.+.......+++.++|...+||.+||||||||||+++.+||++++.
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y 261 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY 261 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC
Confidence 36788887777788888888999999999999999999999999999999999999999999875
No 19
>KOG0734|consensus
Probab=99.40 E-value=4e-13 Score=94.38 Aligned_cols=70 Identities=40% Similarity=0.649 Sum_probs=62.4
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+...++|+++.|.|..+..+++ +...+++++-|.+++-..++||+|+||||+|||.|++++||+.+++
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred hhhhcccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 444567889999999999999998 4555788999999999999999999999999999999999998875
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.39 E-value=1.2e-12 Score=91.18 Aligned_cols=69 Identities=46% Similarity=0.808 Sum_probs=60.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.++|+++.+.+..+..+.+.+.+ +.+++.+..++...++|++|+||||||||+++++|+++.+.+
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 446789999999999988888876554 788888888998889999999999999999999999987654
No 21
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.38 E-value=1.5e-12 Score=94.20 Aligned_cols=68 Identities=57% Similarity=1.074 Sum_probs=62.8
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++++|++++|++..+..+.+.+..++.+++++..+++..+++++|+||||||||+++++|+++++.
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 34779999999999999999998999999999999999999999999999999999999999998764
No 22
>KOG0737|consensus
Probab=99.38 E-value=9.6e-13 Score=88.62 Aligned_cols=69 Identities=45% Similarity=0.814 Sum_probs=60.8
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhC-CCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIG-IDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..-.++|++|++++..+..+++.+-.++..+++|.... +..++||+|+||||||||.+++++|++.+.+
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 34567899999999999999999999999999997544 4567889999999999999999999998865
No 23
>KOG0738|consensus
Probab=99.38 E-value=6.5e-13 Score=90.40 Aligned_cols=72 Identities=39% Similarity=0.634 Sum_probs=63.1
Q ss_pred CCCCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 7 TKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+.+.|+|++|.|+...+..+++++..++..+++|..+--.+ +|++++||||+|||.|++++|.+++.+
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 345567889999999999999999999999999999998775443 779999999999999999999998754
No 24
>KOG0651|consensus
Probab=99.35 E-value=1.5e-12 Score=86.57 Aligned_cols=69 Identities=48% Similarity=0.932 Sum_probs=64.1
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..-.++|+.++|+-.+...+.+.+..++.+++++.++++.+|.+++||||||+|||.++++++..+++|
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 345678999999999988999999999999999999999999999999999999999999999999886
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.9e-12 Score=89.08 Aligned_cols=70 Identities=51% Similarity=0.932 Sum_probs=64.1
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.++|.+++|++..+..+.+.+.+++..++.+...++..++|++|+||||||||+|++++|.+++.+
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 4567899999999999999999999999999999999899999999999999999999999999977653
No 26
>KOG0735|consensus
Probab=99.34 E-value=3.7e-12 Score=91.72 Aligned_cols=70 Identities=34% Similarity=0.685 Sum_probs=63.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+...+.|++++|+...+..+.+.+.++-+++.+|.+..+..+.||+||||||||||.|+.+++..++.+
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~ 728 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR 728 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee
Confidence 3444599999999999999999999999999999999999999999999999999999999999877653
No 27
>KOG0739|consensus
Probab=99.26 E-value=1.1e-11 Score=82.51 Aligned_cols=70 Identities=46% Similarity=0.768 Sum_probs=60.0
Q ss_pred CCCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 8 KNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...++|.++|+++.|++..+..+++.+..++..+.+|..--. .-+||+||||||+|||.|++++|.+.+-
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~-PwrgiLLyGPPGTGKSYLAKAVATEAnS 192 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRK-PWRGILLYGPPGTGKSYLAKAVATEANS 192 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCC-cceeEEEeCCCCCcHHHHHHHHHhhcCC
Confidence 456789999999999999999999999999999999853322 2367999999999999999999988663
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.25 E-value=2.3e-11 Score=85.02 Aligned_cols=65 Identities=32% Similarity=0.464 Sum_probs=51.4
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+..+|++++|++..+..+.+..... .....++++..++|++|+||||||||+++++||++++.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 35678999999998887776543221 123456788889999999999999999999999998764
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=99.23 E-value=3.2e-11 Score=86.44 Aligned_cols=68 Identities=40% Similarity=0.698 Sum_probs=57.9
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
....++|+++.|.+..+..+.+.+. .+..+..+..++...++|++|+||||||||++++++|++.+.+
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~-~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p 243 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVS-FLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP 243 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHH-HHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456899999999998888887544 4677778888998899999999999999999999999987653
No 30
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.18 E-value=4.5e-12 Score=82.41 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=40.7
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|....++++++|.+++| +.|.||||||||||+++|++.+.|.
T Consensus 8 ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~ 55 (258)
T COG1120 8 LSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK 55 (258)
T ss_pred EEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 556677778899999999999 7899999999999999999988764
No 31
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.15 E-value=4.1e-11 Score=78.64 Aligned_cols=67 Identities=34% Similarity=0.569 Sum_probs=52.5
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
....++++|+++.|.+..+....- +..-+.+++.|.+| .++.+++|||||+|||++++++|++..++
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp 178 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRL-IMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVP 178 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHH-HHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCc
Confidence 355688999999999886654443 33345677777665 78899999999999999999999988764
No 32
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=1e-11 Score=80.13 Aligned_cols=46 Identities=26% Similarity=0.541 Sum_probs=39.2
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+....+++++++.+.+| ++|+||||||||||+++|||...++
T Consensus 9 v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 9 VSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred eEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344555567889999999999 8999999999999999999987765
No 33
>KOG0741|consensus
Probab=99.14 E-value=1.4e-10 Score=81.77 Aligned_cols=69 Identities=33% Similarity=0.674 Sum_probs=58.6
Q ss_pred CCCCCcccc--ccchHHHHHH-HHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 11 EKPDVQYSD--IGGMDMQKQE-IREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 11 ~~~~i~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..|+++|++ |+|++..... +..++...+-.+++.++++...-+||+||||||||||.++|.|..++++-
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAr 283 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAR 283 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCC
Confidence 357888986 6899885544 45567777888999999999999999999999999999999999998764
No 34
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.13 E-value=1.4e-11 Score=83.02 Aligned_cols=46 Identities=35% Similarity=0.599 Sum_probs=40.1
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|.....++++++++.+| +.|.|||||||||++++|||...|+
T Consensus 11 v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~ 58 (352)
T COG3842 11 VSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58 (352)
T ss_pred eeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 455666677889999999999 7799999999999999999988876
No 35
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.1e-10 Score=82.94 Aligned_cols=67 Identities=43% Similarity=0.690 Sum_probs=60.3
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...++|.++.|.+..+..+.+ +...+.++.-|..+|-.+++|++|+||||+|||.|++++|++.+++
T Consensus 144 ~~~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 667999999999999999998 4555777888888999999999999999999999999999999876
No 36
>KOG0732|consensus
Probab=99.07 E-value=2.5e-10 Score=84.90 Aligned_cols=66 Identities=38% Similarity=0.752 Sum_probs=61.4
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
....+.|++++|++.....+++.+-.+|.+++.|.+++++.++|++++||||+|||.++++++..+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~ 323 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAAC 323 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhh
Confidence 345688999999999999999999999999999999999999999999999999999999999764
No 37
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.05 E-value=3.8e-11 Score=75.50 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=34.5
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~ 57 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT 57 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC
Confidence 45788899999888 8999999999999999999988764
No 38
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.04 E-value=5.8e-11 Score=79.75 Aligned_cols=46 Identities=33% Similarity=0.645 Sum_probs=37.1
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|.....++++++.+..| ++|+|||||||||++++|||-..++
T Consensus 9 v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~ 56 (338)
T COG3839 9 VRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT 56 (338)
T ss_pred eEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344444433677888888888 8899999999999999999988775
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=6.7e-11 Score=74.21 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=37.1
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 7 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 53 (213)
T cd03259 7 SKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD 53 (213)
T ss_pred EEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33444445788999999888 8899999999999999999987664
No 40
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.03 E-value=4.5e-11 Score=77.56 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=39.0
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|.+..+++++++.+.+| ++|+||||+|||||+++|.|.+.|.
T Consensus 10 l~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~ 57 (254)
T COG1121 10 LTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57 (254)
T ss_pred eEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 455666435899999999998 8999999999999999999977764
No 41
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.03 E-value=1e-10 Score=74.54 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=34.9
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 55 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS 55 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 445788999999888 8999999999999999999987653
No 42
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.03 E-value=4.9e-11 Score=74.83 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=36.8
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....+++++++.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 6 ~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~ 52 (213)
T cd03235 6 TVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT 52 (213)
T ss_pred eeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 33344445788899999888 8999999999999999999987664
No 43
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.03 E-value=7.8e-11 Score=74.16 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+.+| ++|+||||+|||||+++|++.+.++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 55 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT 55 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45788999999888 8999999999999999999988764
No 44
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.02 E-value=4e-11 Score=74.76 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=36.4
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 6 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 51 (206)
T TIGR03608 6 KKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD 51 (206)
T ss_pred EEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3344445788889988888 8999999999999999999988764
No 45
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.02 E-value=7.3e-11 Score=73.88 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=34.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~ 54 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT 54 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45788899998888 8899999999999999999987654
No 46
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.02 E-value=1.3e-10 Score=74.18 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=41.1
Q ss_pred HHHHhhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 30 IREAVELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++..+...+....++++++|.+.+| ++|.|+||+|||||+++|++.+.+.
T Consensus 23 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~ 74 (236)
T cd03267 23 LKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT 74 (236)
T ss_pred HHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 3344555666667899999999888 8899999999999999999987654
No 47
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.02 E-value=6.4e-11 Score=75.06 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=36.7
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 53 (230)
T TIGR03410 8 VYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK 53 (230)
T ss_pred EEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3344445788899998888 8999999999999999999988764
No 48
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=6.4e-11 Score=74.69 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=36.8
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.+....+++++++.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 7 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 53 (220)
T cd03265 7 VKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT 53 (220)
T ss_pred EEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33444455788899988888 8999999999999999999987653
No 49
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.02 E-value=9.8e-11 Score=74.76 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=41.1
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+..+.++++++++...| ++|+||||+|||||++.++|++.|.
T Consensus 7 ls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~ 54 (259)
T COG4559 7 LSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD 54 (259)
T ss_pred eEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC
Confidence 566677888999999999888 7899999999999999999999864
No 50
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=5e-11 Score=75.82 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=36.1
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~ 53 (235)
T cd03261 9 SFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD 53 (235)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344445788899998888 8999999999999999999987664
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.01 E-value=8e-11 Score=74.62 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=37.0
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 7 ~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 53 (232)
T cd03218 7 SKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD 53 (232)
T ss_pred EEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34444445788899998888 8899999999999999999987654
No 52
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.01 E-value=6.9e-11 Score=73.85 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=36.7
Q ss_pred hccCCC-HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTH-FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~-~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.. ..++++++|.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 6 ~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 53 (205)
T cd03226 6 SFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES 53 (205)
T ss_pred EEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 334444 45788899888888 8999999999999999999987653
No 53
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.01 E-value=7.1e-11 Score=74.37 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=36.4
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....++++++|.+.+| ++|+||||||||||+++|++.+.++
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 53 (222)
T cd03224 8 AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR 53 (222)
T ss_pred eecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3344445788899998888 8999999999999999999987764
No 54
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.01 E-value=8.3e-11 Score=73.72 Aligned_cols=44 Identities=27% Similarity=0.502 Sum_probs=36.4
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 8 ~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 53 (213)
T cd03301 8 KRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT 53 (213)
T ss_pred EEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3344445788899998888 8899999999999999999987664
No 55
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.00 E-value=5.8e-11 Score=75.43 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=35.7
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....+++++++.+.+| ++|.||||||||||+++|++.+.+.
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 53 (236)
T cd03219 9 RFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT 53 (236)
T ss_pred EECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 343445778889988888 8899999999999999999987654
No 56
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.00 E-value=1.2e-10 Score=73.54 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=34.1
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 58 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT 58 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 5788999999888 8999999999999999999988664
No 57
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.00 E-value=9.2e-11 Score=74.37 Aligned_cols=45 Identities=29% Similarity=0.442 Sum_probs=37.0
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 14 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 60 (225)
T PRK10247 14 GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT 60 (225)
T ss_pred EEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 33444455788999999888 8999999999999999999987653
No 58
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=8.3e-11 Score=74.67 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=34.0
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 58 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT 58 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 5788889998888 8999999999999999999988764
No 59
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.00 E-value=8.9e-11 Score=73.51 Aligned_cols=43 Identities=26% Similarity=0.506 Sum_probs=35.7
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 9 ~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~ 53 (213)
T cd03262 9 SFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD 53 (213)
T ss_pred EECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 333445788888888888 8999999999999999999987653
No 60
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.00 E-value=1.3e-10 Score=72.92 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=34.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~ 55 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS 55 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45788899999888 8899999999999999999987653
No 61
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.99 E-value=1.8e-10 Score=71.18 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=33.9
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 45 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ 45 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34678888888888 8999999999999999999987653
No 62
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=8.4e-11 Score=75.02 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=36.5
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 10 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 55 (239)
T cd03296 10 KRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD 55 (239)
T ss_pred EEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3344445788899998888 8899999999999999999987654
No 63
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=1.8e-10 Score=74.88 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=40.5
Q ss_pred HhhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 33 AVELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+...+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~ 77 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT 77 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3566677777889999999888 8999999999999999999988664
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=1.2e-10 Score=74.06 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=36.2
Q ss_pred ccCCC-HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTH-FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~-~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+.. ..++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 8 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 54 (241)
T cd03256 8 KTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT 54 (241)
T ss_pred EecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 33433 45788899998888 8999999999999999999987653
No 65
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.98 E-value=1.4e-10 Score=72.87 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=33.9
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.|+||+|||||+++|++.+.+.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 58 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD 58 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 5788899988888 8899999999999999999987664
No 66
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.98 E-value=1.6e-10 Score=73.15 Aligned_cols=41 Identities=32% Similarity=0.608 Sum_probs=35.0
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..+....++++++|.+.+| ++|.||||+|||||+++|++.+
T Consensus 8 ~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 8 VYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3344445788899998888 8999999999999999999987
No 67
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=7.6e-11 Score=73.83 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=34.4
Q ss_pred CCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 39 THFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 39 ~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
....++++++|.+.+| ++|.||||||||||+++|++.+.+.
T Consensus 11 ~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (210)
T cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD 53 (210)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3345678888888888 7899999999999999999987653
No 68
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.98 E-value=1.1e-10 Score=74.80 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=37.0
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.+..++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 10 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (250)
T PRK11264 10 VKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE 56 (250)
T ss_pred EEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 33444445788999999888 8899999999999999999987653
No 69
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.98 E-value=1.2e-10 Score=75.45 Aligned_cols=43 Identities=28% Similarity=0.459 Sum_probs=36.3
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 21 ~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~ 65 (257)
T PRK11247 21 RYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65 (257)
T ss_pred EECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344456788999999888 8999999999999999999987664
No 70
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=1.6e-10 Score=75.14 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=37.4
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 8 ~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 54 (271)
T PRK13638 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ 54 (271)
T ss_pred EEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 33444456889999999888 8899999999999999999987764
No 71
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.98 E-value=1.5e-10 Score=73.51 Aligned_cols=48 Identities=25% Similarity=0.307 Sum_probs=41.1
Q ss_pred HHhhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 32 EAVELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+...+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 75 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD 75 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33566777777899999999888 8999999999999999999987653
No 72
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=1.1e-10 Score=73.23 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=33.9
Q ss_pred CHHHHhhhCCCCCcc-eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 40 HFDLYKQIGIDPPRG-VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 12 ~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~ 52 (211)
T cd03264 12 KKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPS 52 (211)
T ss_pred CEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 334778888888778 7899999999999999999987664
No 73
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=9.3e-11 Score=73.95 Aligned_cols=39 Identities=31% Similarity=0.560 Sum_probs=34.0
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT 57 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35778889988888 8899999999999999999987654
No 74
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=1.2e-10 Score=75.27 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=35.9
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 10 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 54 (255)
T PRK11248 10 DYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ 54 (255)
T ss_pred EeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 333445788899999888 8999999999999999999987653
No 75
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.97 E-value=1.6e-10 Score=73.65 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=39.1
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+...|...++++++++.+.+| ++|+||||||||||+|+|.+--.+
T Consensus 8 l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred eeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC
Confidence 566778888999999999999 889999999999999999865544
No 76
>KOG0740|consensus
Probab=98.97 E-value=7.6e-10 Score=76.18 Aligned_cols=71 Identities=46% Similarity=0.750 Sum_probs=61.3
Q ss_pred CCCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 8 KNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
......++.|+++.|++..+..+.+.+.+++....+|..+.- ..+|++|+||||+|||.|+++||.+.+++
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~-p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLRE-PVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcccc-ccchhheecCCCCchHHHHHHHHhhhcce
Confidence 345567799999999999999999999999999999877643 45679999999999999999999988764
No 77
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.96 E-value=1.5e-10 Score=72.60 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=34.2
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT 54 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35788889988888 8899999999999999999987664
No 78
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.96 E-value=1.3e-10 Score=72.47 Aligned_cols=43 Identities=33% Similarity=0.386 Sum_probs=36.2
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....+++++++.+.+| ++|.||||+|||||+++|++...+.
T Consensus 10 ~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 54 (200)
T PRK13540 10 DYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE 54 (200)
T ss_pred EeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344445788899998888 8999999999999999999987664
No 79
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.96 E-value=1.2e-10 Score=70.88 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=35.3
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+....+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 10 ~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 53 (163)
T cd03216 10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD 53 (163)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33445778888888888 8899999999999999999988764
No 80
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.96 E-value=1.2e-10 Score=74.14 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=35.8
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....+++++++.+.+| ++|.||||+|||||+++|++.+.++
T Consensus 10 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (236)
T TIGR03864 10 AYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ 54 (236)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 333445788889888888 8899999999999999999987664
No 81
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=1.6e-10 Score=73.77 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=36.4
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....+++++++.+.+| ++|.||||+|||||+++|+|.+.+.
T Consensus 10 ~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 55 (242)
T PRK11124 10 CFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR 55 (242)
T ss_pred EEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3344445788899998888 8999999999999999999987654
No 82
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.95 E-value=2e-10 Score=71.74 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=37.0
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.+..+++++++.+.+| ++|.|+||+|||||+++|++.+.+.
T Consensus 7 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (201)
T cd03231 7 TCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL 53 (201)
T ss_pred EEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33344455788899988888 8999999999999999999987654
No 83
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.95 E-value=1.9e-10 Score=73.85 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=35.7
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 12 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (253)
T TIGR02323 12 SYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD 56 (253)
T ss_pred EeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 333445678889998888 8999999999999999999987654
No 84
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=1.4e-10 Score=74.02 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=36.3
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 11 ~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 56 (241)
T PRK10895 11 KAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD 56 (241)
T ss_pred EEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3344445788899998888 8999999999999999999987653
No 85
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=1.3e-10 Score=71.43 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=34.6
Q ss_pred CCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 39 THFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 39 ~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 11 ~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (178)
T cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD 53 (178)
T ss_pred CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3345678888888888 7899999999999999999987764
No 86
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=1.7e-10 Score=73.76 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=35.9
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 12 ~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 56 (241)
T PRK14250 12 SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT 56 (241)
T ss_pred EeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 343445788899998888 8899999999999999999987653
No 87
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.95 E-value=1.5e-10 Score=73.80 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=36.0
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.+..++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 10 ~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 54 (240)
T PRK09493 10 HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT 54 (240)
T ss_pred EECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344445788899998888 8899999999999999999987654
No 88
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.95 E-value=1.6e-10 Score=76.26 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=37.5
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 11 ~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~ 57 (303)
T TIGR01288 11 SKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD 57 (303)
T ss_pred EEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34444455788999999888 8999999999999999999987664
No 89
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.95 E-value=1.7e-10 Score=72.67 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=37.1
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+..| ++|.|+||+|||||+++|++.+.+.
T Consensus 18 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 64 (214)
T PRK13543 18 AFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE 64 (214)
T ss_pred EEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 33344445788999999888 8899999999999999999987764
No 90
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=3.1e-10 Score=69.35 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=33.8
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~ 55 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT 55 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 5788889988888 8999999999999999999987653
No 91
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.95 E-value=1.4e-10 Score=72.17 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=35.3
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (198)
T TIGR01189 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD 53 (198)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33445678888888888 8999999999999999999987664
No 92
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.94 E-value=1.7e-10 Score=74.51 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=37.1
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 9 ~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~ 55 (258)
T PRK13548 9 SVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD 55 (258)
T ss_pred EEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33444455788999999888 7899999999999999999987654
No 93
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.94 E-value=5.9e-10 Score=71.22 Aligned_cols=45 Identities=29% Similarity=0.575 Sum_probs=39.2
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+...|.....++++++.++++ .+|.||+||||||+++++-++.+.
T Consensus 13 l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl 59 (253)
T COG1117 13 LNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL 59 (253)
T ss_pred eeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhccc
Confidence 566677888999999999888 799999999999999999887654
No 94
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=2.1e-10 Score=73.35 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=36.1
Q ss_pred ccCCC-HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTH-FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~-~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+.. ..+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 8 ~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (242)
T cd03295 8 KRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT 54 (242)
T ss_pred EEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 33444 45788889998888 8899999999999999999987654
No 95
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.94 E-value=1.9e-10 Score=72.44 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~ 58 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT 58 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4788888888888 8899999999999999999987654
No 96
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.94 E-value=2.4e-10 Score=75.37 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|+||||+|||||+++|++.+.|.
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~ 46 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT 46 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34678888999888 7899999999999999999988764
No 97
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=2.2e-10 Score=73.55 Aligned_cols=44 Identities=23% Similarity=0.477 Sum_probs=36.7
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+....++++++|.+.+| ++|.||||+|||||+++|++.+.+
T Consensus 11 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 11 RVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred EEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 33344445788999999888 889999999999999999998865
No 98
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.94 E-value=1.7e-10 Score=72.10 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=35.7
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.+..++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 9 ~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 53 (208)
T cd03268 9 TYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD 53 (208)
T ss_pred EECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 334445788888888888 8899999999999999999987653
No 99
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.93 E-value=1.5e-09 Score=70.32 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=41.3
Q ss_pred cccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCc---ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 17 YSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPR---GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++++.|++..+..+.+.+.+... .......++.... +++|+|||||||||+++++++.+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQI-NEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678888888888775444322 2333345554433 28999999999999999999865
No 100
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.93 E-value=1.7e-10 Score=72.18 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=35.4
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~ 54 (204)
T PRK13538 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD 54 (204)
T ss_pred ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33345678889999888 8999999999999999999987764
No 101
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=2.1e-10 Score=73.05 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=37.1
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 12 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 58 (237)
T PRK11614 12 SAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT 58 (237)
T ss_pred EEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 33444455788899998888 8899999999999999999987664
No 102
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.93 E-value=1.8e-10 Score=74.23 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=37.0
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 13 ~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 59 (258)
T PRK11701 13 TKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD 59 (258)
T ss_pred EEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33344445788899999888 8999999999999999999988664
No 103
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=5.6e-10 Score=74.27 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=38.0
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+.....++++++.++.| ++|.||||+||||++++|||-..|+
T Consensus 8 ~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~ 55 (345)
T COG1118 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD 55 (345)
T ss_pred hhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC
Confidence 444555556667888888888 8999999999999999999987765
No 104
>PRK10908 cell division protein FtsE; Provisional
Probab=98.93 E-value=2.3e-10 Score=72.26 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 55 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS 55 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45788889888888 8899999999999999999987654
No 105
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.93 E-value=2.7e-10 Score=73.01 Aligned_cols=42 Identities=29% Similarity=0.623 Sum_probs=35.5
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+....++++++|.+.+| ++|.|+||+|||||+++|++.+.++
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred ECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 33345788899999888 8899999999999999999988753
No 106
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.93 E-value=1.9e-10 Score=72.18 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=35.7
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 11 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 55 (207)
T PRK13539 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA 55 (207)
T ss_pred EECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 334445678889998888 8899999999999999999987654
No 107
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.92 E-value=3.4e-10 Score=72.80 Aligned_cols=44 Identities=27% Similarity=0.543 Sum_probs=36.9
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+....++++++|.+..| ++|.|+||+|||||+++|++.+.+
T Consensus 14 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 14 NLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred EEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 33444455789999999888 889999999999999999998765
No 108
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.92 E-value=2.1e-10 Score=70.54 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=35.1
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+....+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 9 ~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~ 52 (180)
T cd03214 9 YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS 52 (180)
T ss_pred ECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33344788888888888 8899999999999999999987664
No 109
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.92 E-value=2.7e-10 Score=73.04 Aligned_cols=43 Identities=19% Similarity=0.484 Sum_probs=35.8
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.+..++++++|.+.+| ++|.||||+|||||+++|++.+.+
T Consensus 11 ~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14247 11 VSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL 55 (250)
T ss_pred EEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3344445788899998888 899999999999999999998764
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.92 E-value=2.4e-10 Score=72.93 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=36.3
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 10 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~ 55 (242)
T TIGR03411 10 VSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD 55 (242)
T ss_pred EEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3344445788899999888 7899999999999999999987664
No 111
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=2.2e-10 Score=70.07 Aligned_cols=39 Identities=28% Similarity=0.334 Sum_probs=33.8
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 53 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD 53 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34778888888888 8999999999999999999987653
No 112
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=2e-10 Score=73.80 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=36.8
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 12 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 58 (255)
T PRK11300 12 MMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT 58 (255)
T ss_pred EEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 33344445788889888888 8899999999999999999987764
No 113
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.92 E-value=2.9e-10 Score=81.48 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=39.4
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+....++++++|.+..| ++|+||||||||||+++|+|.+.|.
T Consensus 7 ls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd 54 (638)
T PRK10636 7 LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD 54 (638)
T ss_pred EEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 455566667899999999998 8999999999999999999987663
No 114
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.92 E-value=2.2e-10 Score=75.87 Aligned_cols=46 Identities=26% Similarity=0.256 Sum_probs=38.5
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+....++++++|.+.+| ++|.||||+|||||+++|++.+.++
T Consensus 13 l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~ 60 (306)
T PRK13537 13 VEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD 60 (306)
T ss_pred EEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344455556788999999888 7999999999999999999988765
No 115
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.92 E-value=1.7e-10 Score=74.52 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=36.7
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 11 ~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~ 57 (251)
T PRK09544 11 SVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD 57 (251)
T ss_pred EEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33344445788888888888 8999999999999999999987664
No 116
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.92 E-value=2.1e-10 Score=74.32 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=37.3
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 14 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 60 (265)
T PRK10253 14 TLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA 60 (265)
T ss_pred EEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 34444445788999999888 8999999999999999999988664
No 117
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.92 E-value=3.4e-10 Score=71.12 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 56 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT 56 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4778888888888 8999999999999999999987653
No 118
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.92 E-value=2.5e-10 Score=73.35 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=35.8
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (252)
T TIGR03005 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID 53 (252)
T ss_pred EeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 333445778889988888 8999999999999999999987653
No 119
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.91 E-value=4.7e-10 Score=70.82 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=31.2
Q ss_pred HhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 44 YKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 44 ~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++++|.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~ 40 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD 40 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 46778888888 8899999999999999999987654
No 120
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=3.5e-10 Score=71.94 Aligned_cols=44 Identities=32% Similarity=0.483 Sum_probs=37.0
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....+++++++.+.+| ++|+|+||+|||||+++|++.+.++
T Consensus 8 ~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~ 53 (232)
T cd03300 8 KFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT 53 (232)
T ss_pred EEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3344445788999888888 8999999999999999999998765
No 121
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.91 E-value=2.3e-10 Score=74.67 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=36.6
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 9 ~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred EEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 3344455788999988888 8999999999999999999988763
No 122
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=4e-10 Score=71.52 Aligned_cols=38 Identities=34% Similarity=0.613 Sum_probs=33.8
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 55 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD 55 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC
Confidence 4788889888888 8899999999999999999988764
No 123
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.91 E-value=1.6e-09 Score=68.16 Aligned_cols=39 Identities=28% Similarity=0.533 Sum_probs=35.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.+.+++|.+++| ++|+||||+|||||+++|.++..|+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence 56889999999999 7899999999999999999988775
No 124
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.91 E-value=2.1e-10 Score=77.01 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=39.3
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+....++++++|.+..| ++|+||||+|||||+++|++.+.++
T Consensus 47 l~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~ 94 (340)
T PRK13536 47 VSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD 94 (340)
T ss_pred EEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 455555666889999999988 8899999999999999999988765
No 125
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.91 E-value=4.7e-10 Score=68.65 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 55 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT 55 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 4788888888888 8899999999999999999987664
No 126
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=3.1e-10 Score=72.76 Aligned_cols=44 Identities=30% Similarity=0.555 Sum_probs=36.5
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+....++++++|.+.+| ++|.||||+|||||+++|++.+.+
T Consensus 11 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 11 NIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred EEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 33344445788999998888 789999999999999999998765
No 127
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.91 E-value=3e-10 Score=73.39 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=36.2
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 13 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~ 57 (262)
T PRK09984 13 TFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGD 57 (262)
T ss_pred EeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 344455788899998888 8999999999999999999988753
No 128
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=2.3e-10 Score=73.63 Aligned_cols=45 Identities=29% Similarity=0.501 Sum_probs=36.9
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+.+| ++|+|+||+|||||+++|++.+.+.
T Consensus 9 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 55 (255)
T PRK11231 9 TVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ 55 (255)
T ss_pred EEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 33444455788899998888 7899999999999999999987654
No 129
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.91 E-value=5e-10 Score=70.48 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=34.0
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|.||||+|||||+++|++...+.
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~ 57 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT 57 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 34788999998888 8899999999999999999987653
No 130
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.90 E-value=8.4e-10 Score=68.61 Aligned_cols=45 Identities=27% Similarity=0.456 Sum_probs=37.2
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.-....++++++|.+.+| ++|.||+|||||||++++|....++
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~ 56 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT 56 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC
Confidence 34445566889999999998 9999999999999999999766553
No 131
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=3e-10 Score=72.26 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=33.7
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 62 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT 62 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4788899999888 8899999999999999999987653
No 132
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=2.2e-10 Score=74.21 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=36.7
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 18 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 64 (265)
T PRK10575 18 SFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS 64 (265)
T ss_pred EEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 33344445788899999888 8899999999999999999987653
No 133
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.90 E-value=2.1e-10 Score=74.55 Aligned_cols=43 Identities=26% Similarity=0.467 Sum_probs=35.8
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 16 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (269)
T PRK11831 16 TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD 60 (269)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 334445778889999888 8999999999999999999987653
No 134
>KOG0730|consensus
Probab=98.90 E-value=3.6e-09 Score=75.71 Aligned_cols=65 Identities=60% Similarity=1.015 Sum_probs=60.1
Q ss_pred CCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 13 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+.+. .++++.......+.+.+.+++.++.++..++...++|++++||||+|||.+++++++++++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a 244 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA 244 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc
Confidence 5566 7889999999999999999999999999999999999999999999999999999999884
No 135
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.89 E-value=2.8e-09 Score=68.33 Aligned_cols=59 Identities=25% Similarity=0.395 Sum_probs=34.3
Q ss_pred CCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 13 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+-+++++.|.+..+....-.+...... -.....++||||||+|||||++.||.+++.+
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence 3446888888877655433211111000 0122348999999999999999999998865
No 136
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=8.8e-10 Score=69.74 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=34.0
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ 56 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 4788999999888 8899999999999999999987653
No 137
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.89 E-value=3e-10 Score=71.73 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=35.0
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+....++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (223)
T TIGR03740 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT 53 (223)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33345778888888888 8899999999999999999987654
No 138
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9.3e-10 Score=68.96 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=37.1
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVLC 80 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~~ 80 (80)
.-....+|.+++|.+..| +.|.||||+|||||+|+|++-+.|.+
T Consensus 11 ~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~ 56 (209)
T COG4133 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA 56 (209)
T ss_pred ccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC
Confidence 334556889999998888 78999999999999999999887753
No 139
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.89 E-value=3.3e-10 Score=72.16 Aligned_cols=42 Identities=26% Similarity=0.568 Sum_probs=34.8
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...+....++++++|.+..| ++|+||||+|||||+++|++.+
T Consensus 7 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 7 HVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33344445788899999888 8999999999999999999974
No 140
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.89 E-value=5.6e-10 Score=72.04 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=34.1
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| +.|+|+||||||||+++|++...++
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~ 60 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC
Confidence 3889999999999 8999999999999999999877664
No 141
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=4.4e-10 Score=72.02 Aligned_cols=43 Identities=28% Similarity=0.497 Sum_probs=36.0
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+....++++++|.+.+| ++|.||||+|||||+++|++.+.+
T Consensus 11 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 11 LFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred EEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 3344445788999999888 889999999999999999998764
No 142
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.89 E-value=7.3e-10 Score=70.14 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=33.2
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~ 63 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS 63 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 678888888888 8999999999999999999987654
No 143
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.88 E-value=5.4e-10 Score=72.17 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=41.1
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+.+..+++++++++++| +++.||||||||||+++|.+.+.|.
T Consensus 14 v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~ 61 (263)
T COG1127 14 VTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61 (263)
T ss_pred eeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC
Confidence 566678888999999999999 7899999999999999999988764
No 144
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=4.5e-10 Score=72.03 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=34.8
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+....++++++|.+.+| ++|.||||+|||||+++|++.+.
T Consensus 12 ~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred EeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 334445788889998888 88999999999999999999876
No 145
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.88 E-value=3.5e-10 Score=72.91 Aligned_cols=44 Identities=18% Similarity=0.465 Sum_probs=36.3
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+....++++++|.+.+| ++|+||||+|||||+++|++.+.+
T Consensus 11 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 11 NIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred EEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 34444445788889988888 899999999999999999998763
No 146
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.88 E-value=6.2e-10 Score=69.50 Aligned_cols=38 Identities=34% Similarity=0.545 Sum_probs=34.2
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~ 58 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL 58 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence 4788999999888 8899999999999999999987764
No 147
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.88 E-value=3.8e-10 Score=80.72 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=38.8
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+....++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 9 ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~ 56 (635)
T PRK11147 9 AWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD 56 (635)
T ss_pred EEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 444555566889999999888 8999999999999999999987654
No 148
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.88 E-value=8.3e-10 Score=69.53 Aligned_cols=39 Identities=31% Similarity=0.558 Sum_probs=34.5
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 54 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL 54 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 35788899998888 8999999999999999999988664
No 149
>CHL00181 cbbX CbbX; Provisional
Probab=98.88 E-value=4.1e-09 Score=69.48 Aligned_cols=58 Identities=33% Similarity=0.479 Sum_probs=43.9
Q ss_pred ccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCc-c--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 18 SDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPR-G--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.++.|++..+..+.+.+.+ +....+....++..+. + ++|+||||||||++++++++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3688898888888776554 3334566667765543 4 8999999999999999998875
No 150
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.88 E-value=7.6e-10 Score=68.20 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=33.0
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA 53 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 678888888888 8999999999999999999988764
No 151
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.88 E-value=6.6e-10 Score=77.20 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=37.9
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 9 l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~ 56 (490)
T PRK10938 9 GTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL 56 (490)
T ss_pred EEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 344454455889999999888 8999999999999999999987653
No 152
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.88 E-value=6.2e-10 Score=72.14 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=34.5
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|.||||+|||||+++|++.+.++
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 64 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA 64 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34788899999888 8899999999999999999988764
No 153
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.88 E-value=3.3e-10 Score=76.79 Aligned_cols=43 Identities=30% Similarity=0.583 Sum_probs=35.7
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 12 ~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~ 56 (369)
T PRK11000 12 AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT 56 (369)
T ss_pred EeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 344445678888888888 8999999999999999999987664
No 154
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.88 E-value=1.1e-09 Score=69.01 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=34.0
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 57 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS 57 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 4788999999888 8899999999999999999987654
No 155
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.88 E-value=5.3e-10 Score=71.71 Aligned_cols=43 Identities=28% Similarity=0.575 Sum_probs=35.4
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...+....++++++|.+.+| ++|.||||+|||||+++|++.+.
T Consensus 10 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 10 DLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred EEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 33344445788899998888 89999999999999999999764
No 156
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.87 E-value=5e-10 Score=68.74 Aligned_cols=38 Identities=21% Similarity=0.438 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 55 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ 55 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 4788889888888 8899999999999999999987653
No 157
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.87 E-value=5.2e-10 Score=71.83 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=34.4
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+....++++++|.+.+| ++|+||||+|||||+++|++.++
T Consensus 15 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 15 FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred EECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 333445788999999888 89999999999999999999754
No 158
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.87 E-value=4.4e-10 Score=74.18 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=40.0
Q ss_pred hhccCC-CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLT-HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~-~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+. ...++.+++|.+.+| ++|.||||+|||||+++|++.+.++
T Consensus 10 l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred eEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 556666 577889999999999 7899999999999999999988765
No 159
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.2e-09 Score=68.13 Aligned_cols=40 Identities=30% Similarity=0.533 Sum_probs=35.0
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
....++++++.+..| +++.||||||||||++.+|+...|.
T Consensus 17 ~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~ 58 (259)
T COG4525 17 PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS 58 (259)
T ss_pred chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc
Confidence 355889999999888 8899999999999999999987763
No 160
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.87 E-value=4.5e-10 Score=79.25 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=38.6
Q ss_pred hhccCC-CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLT-HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~-~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+. ...++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 12 l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~ 60 (556)
T PRK11819 12 VSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF 60 (556)
T ss_pred EEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 444454 456889999999998 8999999999999999999988663
No 161
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.87 E-value=1.1e-09 Score=70.19 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=33.5
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++.+.+| ++|+||||||||||+++|++-..|+
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt 58 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4678889999999 8999999999999999999876664
No 162
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=4.6e-10 Score=72.40 Aligned_cols=43 Identities=26% Similarity=0.493 Sum_probs=35.8
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...+....++++++|.+.+| ++|.||||+|||||+++|++.+.
T Consensus 19 ~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 19 NLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 33344445788899998888 89999999999999999999875
No 163
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.87 E-value=2.8e-10 Score=73.33 Aligned_cols=45 Identities=13% Similarity=0.332 Sum_probs=36.7
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.+..++++++|.+.+| ++|+|+||+|||||+++|++.+.+.
T Consensus 12 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 58 (257)
T PRK10619 12 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS 58 (257)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33344445778899998888 7899999999999999999987654
No 164
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.87 E-value=3.5e-10 Score=73.39 Aligned_cols=44 Identities=18% Similarity=0.420 Sum_probs=36.6
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+....++++++|.+.+| ++|+||||+|||||+++|++.+.+
T Consensus 26 ~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 71 (267)
T PRK14235 26 SVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDT 71 (267)
T ss_pred EEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 34444445788999999888 899999999999999999998864
No 165
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=3.8e-10 Score=76.10 Aligned_cols=45 Identities=27% Similarity=0.443 Sum_probs=36.6
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....+++++++.+..| ++|+||||||||||+++|+|...++
T Consensus 13 ~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~ 59 (351)
T PRK11432 13 TKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT 59 (351)
T ss_pred EEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC
Confidence 33344445678888888888 8999999999999999999988765
No 166
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.86 E-value=3.4e-10 Score=67.68 Aligned_cols=39 Identities=31% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 53 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD 53 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 34677888888888 7899999999999999999987653
No 167
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.86 E-value=3.8e-10 Score=72.71 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=36.5
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....++++++|.+..| ++|+||||+|||||+++|++.+.++
T Consensus 9 ~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 54 (256)
T TIGR03873 9 WSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD 54 (256)
T ss_pred EEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 3344445788899988888 8899999999999999999987664
No 168
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.86 E-value=9.9e-10 Score=69.93 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=33.5
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 56 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT 56 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC
Confidence 4788888888888 8999999999999999999987653
No 169
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.86 E-value=6.3e-09 Score=74.85 Aligned_cols=67 Identities=40% Similarity=0.694 Sum_probs=54.8
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.....|.++.+.+..+..+.+.+.+ +.++..+..++...++|++|+||||||||+++++++++++++
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3456688888988888888775554 556667777888889999999999999999999999988754
No 170
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.86 E-value=9.8e-10 Score=66.97 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG 54 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4778888888888 8999999999999999999987764
No 171
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.86 E-value=3.9e-10 Score=73.39 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 60 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA 60 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34778889888888 8999999999999999999987664
No 172
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.86 E-value=7.4e-10 Score=72.35 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=40.2
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|.+...++++++.+..| +.|+|||||||||++++|.+.+.++
T Consensus 7 vsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept 54 (309)
T COG1125 7 VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT 54 (309)
T ss_pred eehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 455666788899999999999 7899999999999999999988775
No 173
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.86 E-value=4.5e-10 Score=69.82 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=31.4
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++. ++|.+..| ++|.|+||+|||||+++|++.+.++
T Consensus 15 ~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 53 (195)
T PRK13541 15 NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS 53 (195)
T ss_pred EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3444 78888888 8999999999999999999987664
No 174
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.86 E-value=5.5e-10 Score=72.15 Aligned_cols=42 Identities=26% Similarity=0.540 Sum_probs=35.2
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..+.+..++++++|.+.+| ++|.||||+|||||+++|++.+.
T Consensus 21 ~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 21 FYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred EEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3334445788899999888 89999999999999999999875
No 175
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.85 E-value=1.1e-09 Score=71.07 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=34.1
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~ 66 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT 66 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 4788899999888 8999999999999999999988764
No 176
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.85 E-value=1.5e-09 Score=67.86 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=33.9
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.|+||+|||||+++|++.+.+.
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 61 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4788999999888 8999999999999999999987653
No 177
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=6e-10 Score=71.54 Aligned_cols=42 Identities=29% Similarity=0.635 Sum_probs=35.5
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+....++++++|.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 14 ~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (251)
T PRK14249 14 YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIV 57 (251)
T ss_pred ECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCcc
Confidence 33445788899988888 8899999999999999999988763
No 178
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=5.7e-10 Score=71.73 Aligned_cols=43 Identities=28% Similarity=0.470 Sum_probs=35.5
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...+.+..++++++|.+.+| ++|.||||+|||||+++|++..+
T Consensus 13 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 13 NLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred EEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 33344456788999999888 88999999999999999998765
No 179
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.85 E-value=1.5e-09 Score=68.65 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=34.0
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 67 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 4788999999888 8999999999999999999987654
No 180
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=6e-10 Score=71.92 Aligned_cols=44 Identities=23% Similarity=0.512 Sum_probs=36.1
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+....++++++|.+.+| ++|.|+||+|||||+++|++.+.+
T Consensus 19 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 64 (258)
T PRK14268 19 NLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL 64 (258)
T ss_pred EEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 33344445788999999888 889999999999999999998753
No 181
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.85 E-value=5.8e-10 Score=77.75 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=37.8
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 10 l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~ 57 (501)
T PRK10762 10 IDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD 57 (501)
T ss_pred eEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344444455788999999888 8899999999999999999988664
No 182
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.85 E-value=4.1e-10 Score=76.01 Aligned_cols=45 Identities=33% Similarity=0.564 Sum_probs=36.2
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+..| ++|+||||||||||+++|+|...+.
T Consensus 11 ~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~ 57 (353)
T TIGR03265 11 RKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT 57 (353)
T ss_pred EEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Confidence 33444445677888888877 8999999999999999999987764
No 183
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=6.5e-10 Score=77.97 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=37.3
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.+....++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 8 s~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~ 54 (530)
T PRK15064 8 TMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS 54 (530)
T ss_pred EEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33444456889999999888 8999999999999999999987653
No 184
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.85 E-value=1.3e-09 Score=68.83 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=33.8
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 61 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4688899998888 8999999999999999999987664
No 185
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.85 E-value=1.2e-09 Score=69.56 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 55 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE 55 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 34778889888888 8999999999999999999988654
No 186
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.85 E-value=5.9e-10 Score=71.17 Aligned_cols=42 Identities=29% Similarity=0.550 Sum_probs=35.5
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+....+++++++.+.+| ++|.||||+|||||+++|++.+.++
T Consensus 10 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 53 (237)
T TIGR00968 10 FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD 53 (237)
T ss_pred ECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34445788899888888 8899999999999999999987653
No 187
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.85 E-value=4e-10 Score=76.04 Aligned_cols=43 Identities=33% Similarity=0.546 Sum_probs=35.8
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+..| ++|+||||||||||+++|++.+.++
T Consensus 11 ~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~ 55 (353)
T PRK10851 11 SFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT 55 (353)
T ss_pred EeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 334445678888888888 8999999999999999999988765
No 188
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=7.6e-10 Score=72.16 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=34.4
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 55 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ 55 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34788999999888 8999999999999999999987764
No 189
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.84 E-value=1.1e-09 Score=69.59 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=30.4
Q ss_pred HhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 44 YKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 44 ~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++++++.+.+| ++|.||||+|||||+++|++.+.+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45677777777 889999999999999999998876
No 190
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.84 E-value=1.8e-09 Score=78.38 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=39.0
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.-..+.+++++++.++.| ++|+|+||||||||+++|.+.+.|.
T Consensus 480 ~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 480 RYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred EeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34444457899999999999 9999999999999999999999885
No 191
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=7.7e-10 Score=71.56 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=38.9
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+....++++++|.+.+| ++|+|+||+|||||+++|++.+.+.
T Consensus 16 ~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~ 63 (257)
T PRK14246 16 LYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY 63 (257)
T ss_pred EEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 455566667889999998888 8999999999999999999987653
No 192
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=9.7e-10 Score=71.48 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=34.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 62 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35788999998888 8899999999999999999987653
No 193
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.84 E-value=9.7e-10 Score=76.87 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=38.7
Q ss_pred hhccCCC-HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTH-FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~-~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.|.+ ..+++++++.+++| ++|+||+|||||||+++|++.+.|+
T Consensus 340 vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 340 LSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred EEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3444433 34789999999999 9999999999999999999999876
No 194
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.84 E-value=6.5e-10 Score=72.16 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=36.4
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+....++++++|.+..| ++|.||||+|||||+++|++.+.+
T Consensus 27 ~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 72 (267)
T PRK14237 27 HVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDT 72 (267)
T ss_pred EEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 33344456788999999888 899999999999999999998753
No 195
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.84 E-value=1.5e-09 Score=68.78 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=33.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..+++++++.+..| ++|+||||+|||||+++|++.+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 45788899888888 89999999999999999999876
No 196
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=5.3e-10 Score=72.68 Aligned_cols=43 Identities=30% Similarity=0.636 Sum_probs=35.5
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...+....++++++|.+..| ++|.||||||||||+++|++.+.
T Consensus 20 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 20 TISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 33344445788999999888 88999999999999999999865
No 197
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=5.2e-10 Score=75.58 Aligned_cols=40 Identities=35% Similarity=0.659 Sum_probs=34.1
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...++++++|.+.+| ++|+||||||||||+++|++...+.
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~ 57 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT 57 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC
Confidence 344677888888888 7899999999999999999987664
No 198
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.84 E-value=7.3e-10 Score=72.11 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=36.6
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+...+....++++++|.+.+| ++|+|+||+|||||+++|+|.+.
T Consensus 30 l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 30 LNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred eEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 344444456789999999888 89999999999999999999875
No 199
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.84 E-value=1.4e-09 Score=69.26 Aligned_cols=35 Identities=26% Similarity=0.511 Sum_probs=29.7
Q ss_pred hhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 45 ~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 38 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT 38 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4566777777 8999999999999999999987653
No 200
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.84 E-value=1.4e-09 Score=70.13 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=36.5
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVLC 80 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~~ 80 (80)
....+++++|.+.+| +.|+|+||+|||||++.|++-+.|+.
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 344679999999999 99999999999999999999998863
No 201
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=7.5e-10 Score=71.49 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=36.4
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+.+..+++++++.+.+| ++|+|+||+|||||+++|++.+.+
T Consensus 14 ~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 59 (259)
T PRK14260 14 SFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59 (259)
T ss_pred EEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 33444445788999999888 899999999999999999998764
No 202
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=7.4e-10 Score=72.27 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=34.2
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+|+||+|||||+++|++.+.++
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~ 57 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT 57 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4788999999888 7899999999999999999988765
No 203
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.84 E-value=5e-10 Score=76.17 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=36.3
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+..| ++|+||||||||||+++|+|.+.+.
T Consensus 21 ~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~ 67 (375)
T PRK09452 21 SKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD 67 (375)
T ss_pred EEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 33344445677888888888 8999999999999999999988764
No 204
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.84 E-value=3.8e-10 Score=74.47 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=36.0
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+....++++++|.+..| ++|.||||+|||||+++|++.+.++
T Consensus 11 ~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~ 55 (301)
T TIGR03522 11 LYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD 55 (301)
T ss_pred EECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 334445778889999888 8999999999999999999987664
No 205
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=6.4e-10 Score=71.43 Aligned_cols=43 Identities=21% Similarity=0.528 Sum_probs=35.8
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...+....+++++++.+..| ++|+|+||||||||+++|++.+.
T Consensus 11 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 11 NVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred EEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 33444445788899998888 89999999999999999999874
No 206
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=8e-10 Score=70.95 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=34.4
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+....+++++++.+.+| ++|+|+||+|||||+++|++...+
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (251)
T PRK14270 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDL 56 (251)
T ss_pred ECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 33345788889998888 889999999999999999998653
No 207
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=8.4e-10 Score=79.13 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=38.9
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+....++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 318 l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~ 365 (638)
T PRK10636 318 VSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV 365 (638)
T ss_pred eEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 445555556889999999998 8999999999999999999988664
No 208
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=7.1e-10 Score=71.13 Aligned_cols=43 Identities=23% Similarity=0.534 Sum_probs=35.7
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...+....+++++++.+.+| ++|+|+||+|||||+++|++.+.
T Consensus 11 ~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 11 HLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 33344445788899998888 88999999999999999999875
No 209
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.84 E-value=8.2e-10 Score=77.85 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=38.0
Q ss_pred hhccCC-CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLT-HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~-~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+. ...++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 10 ls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~ 58 (552)
T TIGR03719 10 VSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF 58 (552)
T ss_pred EEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344444 445889999999998 8999999999999999999987653
No 210
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.84 E-value=1.1e-09 Score=68.24 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=33.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh--CC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT--TV 78 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~--~~ 78 (80)
..+++++++.+.+| ++|.||||+|||||+++|++.+ .+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~ 63 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45788899988888 8899999999999999999987 54
No 211
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=1.1e-09 Score=71.36 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=33.5
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~ 60 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT 60 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4788899998888 7899999999999999999987653
No 212
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.83 E-value=7.4e-10 Score=77.32 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=37.9
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+....++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 11 l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~ 58 (510)
T PRK09700 11 IGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT 58 (510)
T ss_pred eEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC
Confidence 344444455789999999998 8899999999999999999987653
No 213
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.83 E-value=8.5e-10 Score=71.52 Aligned_cols=44 Identities=23% Similarity=0.506 Sum_probs=36.2
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+...+....+++++++.+.+| ++|+|+||+|||||+++|++.+.
T Consensus 16 v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 16 LNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred eEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 344444445788999999888 89999999999999999998765
No 214
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.83 E-value=2.9e-10 Score=66.68 Aligned_cols=33 Identities=33% Similarity=0.537 Sum_probs=27.6
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++++.+.+| ++|+|+||||||||+++|++.+.+
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeecccccc
Confidence 456666667 899999999999999999987754
No 215
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.83 E-value=7.6e-10 Score=70.97 Aligned_cols=38 Identities=29% Similarity=0.599 Sum_probs=32.6
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHH
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
+....++++++|.+.+| ++|+|+||+|||||+++|++.
T Consensus 17 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 17 VNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 33345788889998888 889999999999999999996
No 216
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=1.1e-09 Score=76.89 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=37.8
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 325 l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~ 372 (530)
T PRK15064 325 LTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD 372 (530)
T ss_pred eEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344444556788999999888 8999999999999999999987654
No 217
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.83 E-value=5.2e-10 Score=76.70 Aligned_cols=46 Identities=26% Similarity=0.404 Sum_probs=38.4
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 9 ls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~ 56 (402)
T PRK09536 9 LSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT 56 (402)
T ss_pred EEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 344455556788999999998 7899999999999999999988764
No 218
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.83 E-value=9.5e-10 Score=70.31 Aligned_cols=41 Identities=20% Similarity=0.453 Sum_probs=34.4
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..+....+++++++.+.+| ++|.|+||+|||||+++|++..
T Consensus 9 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 9 VSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 3344445788899988888 8999999999999999999984
No 219
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.83 E-value=8.3e-10 Score=69.67 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=34.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|.|+||+|||||+++|++.+.+.
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~ 58 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ 58 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34788899998888 8999999999999999999987664
No 220
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=1.5e-09 Score=70.47 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=33.7
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~ 62 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK 62 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3788899988888 8899999999999999999988764
No 221
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.83 E-value=6.9e-10 Score=72.12 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=34.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 65 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS 65 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45788999999888 8999999999999999999987653
No 222
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.3e-09 Score=71.42 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=34.4
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|+||||+|||||+++|++.+.++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~ 60 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4789999999898 8999999999999999999988765
No 223
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=7.5e-10 Score=72.19 Aligned_cols=44 Identities=23% Similarity=0.468 Sum_probs=36.4
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+...+....++++++|.+..| ++|+||||+|||||+++|++.+.
T Consensus 26 l~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~ 71 (274)
T PRK14265 26 VKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMND 71 (274)
T ss_pred EEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 344444445788999999888 88999999999999999998865
No 224
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.82 E-value=6.7e-10 Score=75.23 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=36.3
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.....++++++.+..| ++|+||||||||||+++|++...++
T Consensus 12 ~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 58 (362)
T TIGR03258 12 RVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA 58 (362)
T ss_pred EEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33344445678888888888 8999999999999999999987764
No 225
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=6.3e-10 Score=71.31 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=36.0
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+...+....+++++++.+..| ++|+||||+|||||+++|++.+.
T Consensus 8 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (246)
T PRK14269 8 LNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMND 53 (246)
T ss_pred eEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 344444445788899988888 89999999999999999999864
No 226
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.2e-09 Score=71.58 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=33.8
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 64 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3788999999888 8999999999999999999987654
No 227
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.82 E-value=8e-10 Score=71.18 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=33.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+++++++.+.+| ++|+|+||+|||||+++|++.+.+
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34788899999888 889999999999999999998765
No 228
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.82 E-value=7.7e-10 Score=77.39 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=38.1
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+....++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 17 l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~ 64 (510)
T PRK15439 17 ISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD 64 (510)
T ss_pred EEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344455556788999999888 8999999999999999999987653
No 229
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.82 E-value=1.1e-09 Score=74.27 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=34.7
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
....+++++|.+.+| ++|.||||||||||+++|++.+.++
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~ 46 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT 46 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC
Confidence 344678888899888 8999999999999999999998775
No 230
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.5e-09 Score=70.99 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=34.3
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 4788999999888 8999999999999999999988764
No 231
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=7.5e-10 Score=72.30 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=37.8
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+...+....++++++|.+.+| ++|+|+||+|||||+++|++.+.+
T Consensus 27 l~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 27 LTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred EEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 444555556789999999888 889999999999999999998764
No 232
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=6.8e-10 Score=74.56 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=34.4
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~ 58 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT 58 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 34788899999998 7899999999999999999988764
No 233
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=1.7e-09 Score=68.72 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=33.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~ 54 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS 54 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 34778888888888 8899999999999999999987653
No 234
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=1e-09 Score=71.13 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=35.0
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...+....++++++|.+.+| ++|+|+||+|||||+++|++.+
T Consensus 28 ~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 28 SIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33444455788999999888 8999999999999999999965
No 235
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.81 E-value=1.1e-09 Score=68.49 Aligned_cols=39 Identities=31% Similarity=0.554 Sum_probs=33.4
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+....++++++|.+.+| ++|.|+||+|||||+++|++..
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 10 VGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred eCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33445788899998888 8999999999999999999983
No 236
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=1.2e-09 Score=68.34 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=33.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..++++++|.+.+| ++|+||||+|||||+++|++.+.
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 45788899988888 89999999999999999999876
No 237
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.81 E-value=1.8e-09 Score=66.83 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=28.4
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHH
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~ 73 (80)
.++++++|.+.+| ++|.||||||||||++++.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4577888888888 8999999999999999986
No 238
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.81 E-value=1e-09 Score=70.39 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=34.6
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...+....++++++|.+.+| ++|+||||+|||||+++|++..
T Consensus 12 ~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 12 SVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred EEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 33344445788899998888 8999999999999999999874
No 239
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.81 E-value=1.1e-08 Score=67.26 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=43.8
Q ss_pred cccchHHHHHHHHHHhhccCCCHHHHhhhCCCCC---cceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 19 DIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPP---RGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+.|++..+..+.+.+.+ ..........++... .+++|+||||||||+++++++..+.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578888888888775555 445556667776642 2499999999999999999987653
No 240
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.80 E-value=9.7e-10 Score=71.50 Aligned_cols=44 Identities=23% Similarity=0.455 Sum_probs=35.9
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+....++++++|.+.+| ++|+||||+|||||+++|++.+.+
T Consensus 32 ~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~ 77 (272)
T PRK14236 32 NLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL 77 (272)
T ss_pred EEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 33333445788899998888 899999999999999999998763
No 241
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=1.6e-09 Score=70.59 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=34.2
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|+||||+|||||+++|++.+.++
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 58 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ 58 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4788999999888 8999999999999999999987764
No 242
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.80 E-value=1e-09 Score=78.62 Aligned_cols=46 Identities=33% Similarity=0.501 Sum_probs=38.6
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+....++++++|.+.+| ++|+||||||||||+++|++.+.|.
T Consensus 325 l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~ 372 (635)
T PRK11147 325 VNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD 372 (635)
T ss_pred eEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 455555556889999999998 8999999999999999999987654
No 243
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.80 E-value=6.6e-09 Score=70.92 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.0
Q ss_pred hCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 47 IGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 47 ~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++.++++++|+||||||||.++++||++++++
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 557788889999999999999999999999875
No 244
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.80 E-value=1.1e-09 Score=67.86 Aligned_cols=31 Identities=29% Similarity=0.295 Sum_probs=26.6
Q ss_pred CCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 49 IDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 49 ~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+| ++|.||||+|||||+++|++.+.++
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 52 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN 52 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 455666 8899999999999999999988764
No 245
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=9.9e-10 Score=76.67 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=37.6
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+...+....++++++|.+..| ++|+||||||||||+++|++.+.+
T Consensus 11 l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 11 ITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred eEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344454556889999999888 889999999999999999998765
No 246
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=8.2e-10 Score=70.92 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=34.7
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+....++++++|.+.+| ++|.|+||+|||||+++|++...
T Consensus 14 ~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 14 WYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred EECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 333445788899998888 78999999999999999999865
No 247
>KOG0058|consensus
Probab=98.80 E-value=3.7e-09 Score=76.18 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=37.6
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVLC 80 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~~ 80 (80)
+..++++++|++++| ++|+||||+||||++.+|-+.|+|+.
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts 522 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 346899999999999 89999999999999999999999873
No 248
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=1.2e-09 Score=70.72 Aligned_cols=43 Identities=16% Similarity=0.437 Sum_probs=36.1
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+....++++++|.+.+| ++|.|+||+|||||+++|++.+.+
T Consensus 15 ~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 15 FYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred EEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3344445788899999888 899999999999999999998875
No 249
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=1.9e-09 Score=70.76 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=34.2
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.||||+|||||+++|++.+.++
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~ 60 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4788999999888 8899999999999999999987764
No 250
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.80 E-value=1.6e-09 Score=70.02 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=40.5
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+..+.++.++++++..| -+|+||||+|||||++.++++..+.
T Consensus 37 v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 37 VSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred eEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 566677888999999999888 8999999999999999999987763
No 251
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=3.1e-09 Score=66.56 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=30.0
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++|.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~ 51 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ 51 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 677888888 8999999999999999999988764
No 252
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=1.7e-09 Score=70.96 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=34.2
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||+|||||+++|++.+.++
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~ 60 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT 60 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4788899999888 8999999999999999999988764
No 253
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.79 E-value=8.3e-10 Score=76.78 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=37.1
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 5 ~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (491)
T PRK10982 5 SKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD 51 (491)
T ss_pred EEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 33444445788999999888 8899999999999999999987653
No 254
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=9.6e-10 Score=70.55 Aligned_cols=39 Identities=26% Similarity=0.533 Sum_probs=32.9
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+....++++++|.+..| ++|+||||+|||||+++|++..
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14245 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMN 53 (250)
T ss_pred ECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 33445778888888888 8999999999999999999863
No 255
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=1.1e-09 Score=70.92 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=36.2
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+....++++++|.+.+| ++|+|+||+|||||+++|++...+
T Consensus 23 ~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 68 (265)
T PRK14252 23 NFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL 68 (265)
T ss_pred EEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 33344445789999998888 899999999999999999998753
No 256
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=1.9e-09 Score=71.43 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=34.0
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||+|||||+++|++.+.++
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~ 60 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD 60 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4788899999888 8999999999999999999987664
No 257
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=2.2e-09 Score=70.24 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=34.2
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.||||+|||||+++|++.+.++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~ 60 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4788999999888 7999999999999999999988764
No 258
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=2e-09 Score=70.67 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=34.1
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|+||||+|||||+++|++.+.++
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~ 59 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 3778999999998 8999999999999999999988764
No 259
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=1.2e-09 Score=70.16 Aligned_cols=43 Identities=28% Similarity=0.532 Sum_probs=35.1
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...+....++++++|.+.+| ++|+|+||+|||||+++|++...
T Consensus 12 ~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14255 12 HLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMND 56 (252)
T ss_pred EEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 33344445788889888888 89999999999999999999753
No 260
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=2.1e-09 Score=70.21 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=34.4
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+|+||+|||||+++|++.+.++
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 63 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4888999999888 8899999999999999999988764
No 261
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=2e-09 Score=70.35 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++.+.+| ++|+|+||+|||||+++|++.+.+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3788899998888 8999999999999999999988764
No 262
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=1.5e-09 Score=71.07 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=34.6
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~ 59 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS 59 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45788999999888 8999999999999999999987654
No 263
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=1.9e-09 Score=70.28 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=33.8
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||+|||||+++|++.+.++
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~ 55 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT 55 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4788899999888 8999999999999999999987654
No 264
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=1.1e-09 Score=71.82 Aligned_cols=44 Identities=18% Similarity=0.490 Sum_probs=37.0
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+...+....++++++|.+.+| ++|.||||+|||||+++|++.+.
T Consensus 45 l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 45 LNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred EEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 444454556889999999888 88999999999999999999875
No 265
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.78 E-value=1.7e-09 Score=75.72 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=35.4
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+.+....++++++|.+..| ++|+||||||||||+++|++.+
T Consensus 7 ~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 7 TKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 33444445788999999888 8999999999999999999985
No 266
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.4e-09 Score=73.99 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=39.9
Q ss_pred hhccCCCH--HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHF--DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~--~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|.+. ..+++++|.+..| ++|+|++||||||+++.|++.|+++
T Consensus 342 vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 342 VSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred ceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 55556554 4899999999999 9999999999999999999988875
No 267
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.78 E-value=1.2e-09 Score=77.11 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=37.8
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+.+..++++++|.+..| ++|.||||||||||+++|++.+.+.
T Consensus 328 l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~ 375 (552)
T TIGR03719 328 LSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD 375 (552)
T ss_pred EEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 344444456888999999888 8999999999999999999987654
No 268
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.78 E-value=8.9e-10 Score=77.75 Aligned_cols=46 Identities=30% Similarity=0.391 Sum_probs=39.4
Q ss_pred hhccCCC-HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTH-FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~-~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+.. ..++++++|.+.+| |+|+||||+|||||++.|++.+++.
T Consensus 327 ~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 327 VSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred cccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC
Confidence 5666644 57899999999888 9999999999999999999887764
No 269
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.77 E-value=1.4e-09 Score=75.70 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=36.6
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+....++++++|.+..| ++|+||||+|||||+++|++.+.+
T Consensus 8 ~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~ 53 (500)
T TIGR02633 8 VKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPH 53 (500)
T ss_pred EEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33444445788999999888 889999999999999999998764
No 270
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.77 E-value=1.9e-09 Score=69.55 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=34.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|.|+||+|||||+++|++.+.+.
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 74 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC
Confidence 35789999999888 8999999999999999999987653
No 271
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=3.9e-09 Score=67.11 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=29.9
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 52 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA 52 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 677787777 8899999999999999999987764
No 272
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.77 E-value=2.7e-09 Score=75.35 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=40.6
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+....+|+++++.+..| +.|+|+||+|||||+++|++...+.
T Consensus 9 ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~ 56 (530)
T COG0488 9 LSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD 56 (530)
T ss_pred eEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC
Confidence 556667788999999999888 9999999999999999999988764
No 273
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.77 E-value=3.3e-09 Score=74.90 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=35.8
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+|+||+|||||+++|+|.+.|.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~ 396 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID 396 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 45889999999888 9999999999999999999999875
No 274
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=2e-09 Score=68.61 Aligned_cols=37 Identities=27% Similarity=0.547 Sum_probs=33.0
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++.+.+| ++|.|+||+|||||+++|++.+.+.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~ 52 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD 52 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 678888888888 8999999999999999999987764
No 275
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.77 E-value=2.2e-09 Score=69.24 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=36.0
Q ss_pred CCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 39 THFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 39 ~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.....+.++++.++.| ++|+|++|+|||||+++|.+..+++
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t 57 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT 57 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 5556778899999999 8999999999999999999977765
No 276
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=2.6e-09 Score=70.24 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=34.2
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|.||||+|||||+++|++.+.++
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT 60 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4788999999998 8999999999999999999987764
No 277
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.76 E-value=1.7e-09 Score=76.36 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=37.3
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 331 ~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~ 377 (556)
T PRK11819 331 SKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD 377 (556)
T ss_pred EEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34444455889999999998 8999999999999999999987653
No 278
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=2.9e-09 Score=71.02 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=34.5
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+.+| ++|+|+||||||||+++|++.+.++
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~ 79 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK 79 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4789999999988 8999999999999999999988764
No 279
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=8.9e-10 Score=71.41 Aligned_cols=41 Identities=17% Similarity=0.424 Sum_probs=35.1
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+....++++++|.+.+| ++|.|+||+|||||+++|++.+.+
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDL 60 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccccc
Confidence 34445778889999888 899999999999999999998865
No 280
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.76 E-value=2.9e-09 Score=69.30 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++.+++|.+..| ++|.||||+|||||+++|+|.+.+.
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~ 77 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT 77 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 34678899999888 8999999999999999999987654
No 281
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.76 E-value=3.3e-09 Score=74.07 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=33.5
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~ 316 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA 316 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 688999999998 8999999999999999999987653
No 282
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.76 E-value=7e-09 Score=67.26 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=31.1
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++ +.+| ++|+||||+|||||+++|++.+.++
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~ 53 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 36677774 6666 8999999999999999999998764
No 283
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.76 E-value=3.3e-09 Score=69.75 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=34.2
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|+|+||+|||||+++|++.+.+.
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~ 90 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS 90 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34788899998888 8899999999999999999987663
No 284
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.76 E-value=3.7e-09 Score=76.24 Aligned_cols=39 Identities=31% Similarity=0.354 Sum_probs=36.0
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+++++++.+++| ++|+|++|||||||+++|++.+.|+
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 532 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW 532 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45889999999998 9999999999999999999999876
No 285
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.75 E-value=2.6e-10 Score=73.51 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=40.7
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVLC 80 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~~ 80 (80)
+...+.....+++++|.+.+| ++|+||||+||||++++|++.+.|++
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~ 58 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS 58 (250)
T ss_pred ceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC
Confidence 556666677788899999998 78999999999999999999998863
No 286
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=1.3e-09 Score=74.15 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=35.8
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.....+++++|.+..| ++|+||||||||||+++|++...+.
T Consensus 26 ~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~ 72 (377)
T PRK11607 26 TKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT 72 (377)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 33343444677888888888 7899999999999999999987664
No 287
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.75 E-value=2e-09 Score=69.00 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=39.4
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+...|....+++.++|.+.+| +.|+|+||+||||++++|++...+
T Consensus 9 l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~ 55 (237)
T COG0410 9 LSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP 55 (237)
T ss_pred EeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 456677777889999999999 789999999999999999998775
No 288
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=1.5e-09 Score=67.39 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=31.5
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..+++++++.+.+| ++|.||||+|||||+++|++..
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34778888888888 8899999999999999999864
No 289
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.75 E-value=3.7e-09 Score=76.07 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=36.0
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+|+||||||||+++|++.+.|+
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 506 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE 506 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45889999999998 9999999999999999999999875
No 290
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=1.9e-09 Score=69.17 Aligned_cols=40 Identities=25% Similarity=0.647 Sum_probs=33.7
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+....++++++|.+..| ++|.||||+|||||+++|++..+
T Consensus 13 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 13 FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 33345788899998888 88999999999999999998754
No 291
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.74 E-value=1.9e-09 Score=75.23 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=37.0
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+....++++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 11 ~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 57 (501)
T PRK11288 11 GKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD 57 (501)
T ss_pred EEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34444445788999999888 8999999999999999999987653
No 292
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=2.1e-09 Score=64.71 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=32.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++.++++.+.+| ++|.|+||+|||||+++|++.+.+.
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~ 52 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT 52 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4677778888887 8899999999999999999987653
No 293
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.73 E-value=5.2e-09 Score=74.02 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=35.5
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||||||||||+++|++.+.|+
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~ 368 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS 368 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 45789999999898 8999999999999999999999875
No 294
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=4.2e-09 Score=68.74 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=33.6
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++++++.+.+| ++|+|+||+|||||+++|++.+.++
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~ 60 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF 60 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 788899998888 8999999999999999999988764
No 295
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.73 E-value=2.5e-09 Score=72.96 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=35.3
Q ss_pred CCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 38 LTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.....+++++|.+.+| ++|.|+||+|||||+++|++.+.++
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~ 77 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS 77 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 34444567888999888 7899999999999999999988764
No 296
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=1.7e-09 Score=70.91 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=35.9
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+...+....++++++|.+..| ++|+||||+|||||+++|++...
T Consensus 45 l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 90 (286)
T PRK14275 45 FSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMND 90 (286)
T ss_pred eEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 444444445788899998888 78999999999999999999653
No 297
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.72 E-value=4.1e-09 Score=76.02 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=38.6
Q ss_pred hhccCC-CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLT-HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~-~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.|. ...+++++++.+++| ++|+|+||||||||+++|++.+.|+
T Consensus 479 vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~ 527 (708)
T TIGR01193 479 VSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR 527 (708)
T ss_pred EEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 344443 345889999999888 9999999999999999999999875
No 298
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.72 E-value=6e-09 Score=72.93 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=35.3
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+++| ++|+||+|||||||+++|++.+.|+
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 375 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT 375 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 5789999999999 9999999999999999999999875
No 299
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=5.2e-09 Score=69.93 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=33.3
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.++++++|.+.+| ++|+|+||||||||+++|++.+.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~ 59 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY 59 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 4688899999999 899999999999999999998763
No 300
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.72 E-value=2.2e-09 Score=74.65 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=36.2
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+...+....++++++|.+.+| ++|+||||+|||||+++|++...
T Consensus 266 l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 266 GVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred eEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 344454455788999999888 89999999999999999999654
No 301
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.71 E-value=6.5e-09 Score=70.07 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=29.8
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~ 51 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ 51 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 677777777 8999999999999999999987764
No 302
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.71 E-value=5.3e-09 Score=67.28 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=30.8
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+++++|.+.+| ++|.||||+|||||+++|++.+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~ 47 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP 47 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 467888888888 88999999999999999998764
No 303
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=3.2e-09 Score=70.27 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=36.7
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+...+....++++++|.+.+| ++|+|+||+|||||+++|++.+.
T Consensus 51 l~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 51 LDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred EEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 444444556788899998888 88999999999999999999875
No 304
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.71 E-value=5e-09 Score=70.58 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=33.9
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||+|||||+++|++...|+
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~ 58 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 58 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4678899999888 8899999999999999999988764
No 305
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.71 E-value=1.8e-08 Score=78.77 Aligned_cols=39 Identities=28% Similarity=0.527 Sum_probs=34.4
Q ss_pred HHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
......+|+.+++||+|+||||||||.||+++|++.+++
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VP 1657 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVP 1657 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCc
Confidence 345567888899999999999999999999999998875
No 306
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.71 E-value=7.3e-09 Score=65.11 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=30.8
Q ss_pred HhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 44 YKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 44 ~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.++++.+.+| ++|.||||+|||||+++|++.+.+.
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 51 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA 51 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35677777777 8999999999999999999987664
No 307
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.70 E-value=6.2e-09 Score=68.23 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=33.5
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..++++++|.+.+| ++|+|+||+|||||+++|++.+.
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 34789999999998 89999999999999999999876
No 308
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.70 E-value=5.6e-09 Score=72.86 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~ 306 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT 306 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC
Confidence 3678899999888 8999999999999999999987653
No 309
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.70 E-value=1.8e-08 Score=57.90 Aligned_cols=24 Identities=42% Similarity=0.812 Sum_probs=22.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|+|||||||+++.|+..++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 689999999999999999998764
No 310
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=5.2e-09 Score=71.78 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=32.9
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~ 81 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT 81 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 467888888888 8899999999999999999988764
No 311
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.69 E-value=7.1e-09 Score=73.17 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=40.0
Q ss_pred hhccCC-CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLT-HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~-~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|. +..++++++|.+++| ++|+||+||||||+++.|.+.++++
T Consensus 334 vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~ 382 (567)
T COG1132 334 VSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT 382 (567)
T ss_pred EEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 455566 467899999999888 8999999999999999999999884
No 312
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.69 E-value=5.1e-09 Score=70.18 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=33.8
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+|+||||||||+++|++.+.++
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~ 74 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT 74 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Confidence 4678899999999 8999999999999999999987654
No 313
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=6.5e-09 Score=72.64 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=33.4
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..++++++|.+.+| ++|+||||+|||||+++|++.+.
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 34788999999998 78999999999999999999876
No 314
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.69 E-value=6.4e-09 Score=72.46 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++++++|.+.+| ++|.||||+|||||+++|++.+.|
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p 312 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG 312 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 35788999999888 899999999999999999998864
No 315
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.69 E-value=5.5e-09 Score=74.76 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=34.3
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~ 69 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA 69 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 4788999999888 8999999999999999999988764
No 316
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.69 E-value=5.5e-09 Score=73.99 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=35.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+.+| ++|+|+||||||||+++|++.+.|+
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~ 388 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ 388 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 45889999999888 9999999999999999999999875
No 317
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.69 E-value=9e-09 Score=74.55 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=35.8
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||||+||||++++|++.++++
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 534 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT 534 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 35789999999999 9999999999999999999999875
No 318
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.69 E-value=8.9e-09 Score=69.42 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=29.9
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~ 50 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD 50 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 677778777 7899999999999999999988764
No 319
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=7e-09 Score=69.39 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+|+||||||||+++|++.+.++
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~ 68 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT 68 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC
Confidence 4678889999888 8999999999999999999987654
No 320
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.69 E-value=7.1e-09 Score=74.69 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=35.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+|+||||||||+++|++.+.++
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~ 518 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45789999999988 9999999999999999999999875
No 321
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=5.1e-09 Score=67.43 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=33.9
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++.+.+| ++|+|+||||||||++++++-+.+.
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~ 57 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT 57 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC
Confidence 6778888888888 8999999999999999999988765
No 322
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.68 E-value=9.3e-09 Score=72.87 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=35.5
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||||+|||||+++|++.++++
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~ 393 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35789999999888 9999999999999999999999875
No 323
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.67 E-value=6.9e-09 Score=72.82 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=33.7
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.++++++|.+..| ++|+||||||||||+++|++.+.+
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~ 61 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS 61 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5788999999888 899999999999999999998865
No 324
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.67 E-value=1.1e-08 Score=72.10 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=35.5
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+|+||+|||||+++|+|.+.+.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~ 393 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ 393 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 35789999999999 9999999999999999999999875
No 325
>PLN03073 ABC transporter F family; Provisional
Probab=98.67 E-value=2.6e-09 Score=77.64 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=36.3
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHH
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
+.+.|....++++++|.+..| ++|+|+||+|||||+++|++.
T Consensus 183 ls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 183 FSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 555565566889999999998 999999999999999999975
No 326
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.66 E-value=1.1e-08 Score=65.01 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=38.7
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+.+.+....+++++++.+++| .+|+||||+|||||+.++++.+..
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~ 53 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK 53 (252)
T ss_pred hhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc
Confidence 566777777889999999888 689999999999999999987654
No 327
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.66 E-value=2.5e-08 Score=64.30 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=23.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++|+||||+|||||+++|++.+.++
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~~p~ 52 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPD 52 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC
Confidence 8899999999999999999988764
No 328
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.1e-08 Score=68.43 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=32.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.++++++|.+.+| ++|+|+||||||||+++|++...
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 4678899999888 89999999999999999999875
No 329
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.66 E-value=9e-09 Score=68.94 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=33.7
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.++++++|.+.+| ++|+|+||||||||+++|++.+.+
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 4678899999998 899999999999999999998876
No 330
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.66 E-value=1.1e-08 Score=71.37 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++|.+..| ++|+||||+|||||+++|++.+.++
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~ 305 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT 305 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC
Confidence 478888988888 8899999999999999999987654
No 331
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.66 E-value=1.1e-08 Score=71.91 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=35.4
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||||||||||+++|++.+.+.
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 371 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT 371 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45789999999998 9999999999999999999998875
No 332
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.66 E-value=1.3e-08 Score=71.58 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=35.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+|++|+|||||+++|+|.+.+.
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~ 385 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD 385 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 45788999999888 9999999999999999999999875
No 333
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.65 E-value=8.5e-09 Score=72.96 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=34.5
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+..+++++++.+++| ++|+||+|||||||+++|++.+ |+
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 345788999999999 9999999999999999999998 53
No 334
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.65 E-value=2.7e-08 Score=65.83 Aligned_cols=27 Identities=52% Similarity=0.784 Sum_probs=25.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVLC 80 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~~ 80 (80)
.++|+||||.|||||++.||.++++|+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 399999999999999999999999885
No 335
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.65 E-value=8.1e-09 Score=72.31 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=33.7
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~ 337 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT 337 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4788899999888 8999999999999999999987653
No 336
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.65 E-value=2.9e-08 Score=63.15 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=37.8
Q ss_pred hhccCCCHH-HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFD-LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~-~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|.... ..++++|.+..| ..|.||||+||||+++.|+..+.|+
T Consensus 7 l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 7 LTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred hhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC
Confidence 344444443 678999999999 7899999999999999999988775
No 337
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.65 E-value=1.2e-08 Score=72.37 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=35.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+|++|||||||+++|++.+.|.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~ 394 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT 394 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 34789999999998 9999999999999999999999885
No 338
>KOG0927|consensus
Probab=98.65 E-value=5.5e-09 Score=73.67 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=46.7
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCC-HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTH-FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+..-.+.|.+.+.+......+++ +...|.. ..+|.+++|.+... ++++||||+|||||++++.+.+.|+
T Consensus 372 ~k~l~~~f~~vg~~p~pvi~~~n-v~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~ 443 (614)
T KOG0927|consen 372 EKVLSFRFPEVGKIPPPVIMVQN-VSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT 443 (614)
T ss_pred CceEEEEcccccCCCCCeEEEec-cccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc
Confidence 33444555555553332222232 4555543 36788888776555 9999999999999999999998876
No 339
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.65 E-value=1.6e-08 Score=63.89 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=33.4
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVLC 80 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~~ 80 (80)
...+.++|...++ ++++|.||||||||+++|+|...|+.
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs 67 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC
Confidence 3456677888777 99999999999999999999998873
No 340
>PLN03073 ABC transporter F family; Provisional
Probab=98.64 E-value=9.7e-09 Score=74.69 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=37.1
Q ss_pred hhccCC-CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLT-HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~-~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+. ...++++++|.+..| ++|+||||||||||+++|++.+.|.
T Consensus 514 ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~ 562 (718)
T PLN03073 514 ASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS 562 (718)
T ss_pred eEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 344443 234788999999888 8999999999999999999987664
No 341
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.64 E-value=1.3e-08 Score=71.76 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=34.8
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++.+++| ++|+||||+|||||+++|++.+.+.
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~ 376 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ 376 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4788999999998 9999999999999999999998775
No 342
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.64 E-value=1.2e-08 Score=71.47 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=32.4
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++|.+..| ++|.||||+|||||+++|++.+.+.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~ 316 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR 316 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 478888888888 8999999999999999999987653
No 343
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.64 E-value=5.4e-08 Score=63.88 Aligned_cols=55 Identities=31% Similarity=0.497 Sum_probs=37.2
Q ss_pred ccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 16 QYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+|+++.|.+..+..+...+...... -.....++|+||||+|||+++++++.+++.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4677778777666555433211000 012345899999999999999999998764
No 344
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.8e-08 Score=64.86 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=35.3
Q ss_pred hccCCC-HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 35 ELPLTH-FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 35 ~~~~~~-~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...... .++++.+++.++.| -+|.||||+|||||+..|+|.-
T Consensus 10 hv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 10 HVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred EEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334455 48899999999999 5899999999999999999864
No 345
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.63 E-value=3.1e-08 Score=62.81 Aligned_cols=29 Identities=34% Similarity=0.523 Sum_probs=24.7
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+| ++|.|+||+|||||+++|++.+.+.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 33 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPA 33 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3445 8999999999999999999987654
No 346
>PLN03211 ABC transporter G-25; Provisional
Probab=98.63 E-value=9e-09 Score=74.23 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=37.0
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+....+++++++.+.+| ++|.||||+|||||+++|++...+
T Consensus 76 ~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~ 120 (659)
T PLN03211 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQG 120 (659)
T ss_pred ccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3445567899999999888 899999999999999999998765
No 347
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.63 E-value=1.2e-08 Score=72.53 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=37.9
Q ss_pred hhccCCC-HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTH-FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~-~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+.+ ..+++++++.+++| ++|+||||+|||||+++|++.+.+.
T Consensus 340 v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 388 (585)
T TIGR01192 340 ITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT 388 (585)
T ss_pred EEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC
Confidence 3444433 34789999999888 8999999999999999999998875
No 348
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.1e-08 Score=71.13 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||||||||+++|++...+.
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 301 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 301 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC
Confidence 4788899999998 8999999999999999999887653
No 349
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1.4e-08 Score=72.75 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=34.0
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+|+||||||||+++|++.+.++
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~ 377 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ 377 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 4678999999999 8999999999999999999987654
No 350
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.62 E-value=1.8e-08 Score=65.89 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=33.9
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++|.+.+| +.|+|.|||||||+.++|.+.++|+
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt 66 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC
Confidence 3567788999998 8999999999999999999998876
No 351
>PRK13409 putative ATPase RIL; Provisional
Probab=98.61 E-value=1.7e-08 Score=72.12 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=36.4
Q ss_pred HHhhccCCCH-HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 32 EAVELPLTHF-DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+...|... ..+++++ .+.+| ++|+||||+|||||+++|+|.+.|+
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~ 126 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN 126 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 3355556542 3567777 56777 7899999999999999999988775
No 352
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.61 E-value=1.6e-08 Score=70.97 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=33.0
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..++++++|.+.+| ++|+||||||||||+++|++.+.
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 337 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN 337 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 35789999999999 89999999999999999998763
No 353
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.61 E-value=2e-08 Score=72.41 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=38.4
Q ss_pred hhccCC--CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLT--HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~--~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|. ...+++++++.+++| ++|+|+||||||||+++|++.+.|.
T Consensus 461 vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~ 510 (694)
T TIGR01846 461 IRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ 510 (694)
T ss_pred EEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344443 345889999999888 9999999999999999999998875
No 354
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.60 E-value=1.9e-08 Score=71.10 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=34.8
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+++| ++|+||||+|||||+++|++.+.|+
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~ 395 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4788999999888 8999999999999999999998875
No 355
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.59 E-value=6.4e-08 Score=59.94 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=23.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++|.||+||||||++++|++.+.+.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 38999999999999999999987653
No 356
>PRK08118 topology modulation protein; Reviewed
Probab=98.59 E-value=5.8e-08 Score=59.47 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=23.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.|+|+|||||||||+++.|+..++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 38899999999999999999998764
No 357
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.58 E-value=2.6e-08 Score=70.35 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=34.4
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...++++|.+.+| ++|+|+|||||||++++|++...|.
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~ 344 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578899999999 8999999999999999999988775
No 358
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.58 E-value=2.1e-08 Score=72.28 Aligned_cols=39 Identities=31% Similarity=0.600 Sum_probs=34.8
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||||||||||+++|++.+.+.
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~ 505 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY 505 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35789999999888 8999999999999999999988764
No 359
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.57 E-value=7.1e-08 Score=54.96 Aligned_cols=27 Identities=44% Similarity=0.695 Sum_probs=23.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++|+||+||||||+++.++..+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 348899999999999999999887643
No 360
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.2e-07 Score=66.25 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=39.1
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..+-+|+++.|.+.....+...+... ..+.+++|+||||+||||++++++..+.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345566888888877655544432221 1344589999999999999999998875
No 361
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.57 E-value=3.3e-08 Score=61.90 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=26.6
Q ss_pred hhhCCCCCcc-eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 45 KQIGIDPPRG-VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 45 ~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+++++.+..| ++|+||||+|||||+++|++.++
T Consensus 14 ~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 14 DKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred CCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455666666 78999999999999999997764
No 362
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=4.5e-08 Score=61.50 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=27.0
Q ss_pred hhCCCCC-cceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 46 QIGIDPP-RGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 46 ~~~~~~~-~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++|.+. .-++|+||||+|||||+++|++.+.+.
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~ 50 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPD 50 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 5554443 348899999999999999999988764
No 363
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.56 E-value=1.2e-07 Score=65.60 Aligned_cols=60 Identities=27% Similarity=0.408 Sum_probs=38.9
Q ss_pred ccchHHHHHHHHHHhhccCCCHHHHhhhC-CCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 20 IGGMDMQKQEIREAVELPLTHFDLYKQIG-IDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.|.+..+..+...+..++....+...+. -..+++++|+||+|||||+++++|++.++.+
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45666666666555554433322211111 1134669999999999999999999988764
No 364
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=2.2e-08 Score=67.07 Aligned_cols=36 Identities=22% Similarity=0.596 Sum_probs=33.0
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.++++++|.+.+| ++|+|+||||||||+++|++...
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~ 133 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLND 133 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4789999999998 89999999999999999999875
No 365
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.55 E-value=1.1e-07 Score=65.24 Aligned_cols=27 Identities=44% Similarity=0.810 Sum_probs=23.8
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+++||||||+||||++++|++.++.
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~ 74 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNA 74 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCC
Confidence 345899999999999999999998765
No 366
>PRK04195 replication factor C large subunit; Provisional
Probab=98.55 E-value=1.1e-07 Score=66.41 Aligned_cols=59 Identities=42% Similarity=0.637 Sum_probs=41.9
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++.+-+++++.+.+.....+...+.... . + ...+.++|+||||+||||++++++++++.
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~------~--g-~~~~~lLL~GppG~GKTtla~ala~el~~ 65 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWL------K--G-KPKKALLLYGPPGVGKTSLAHALANDYGW 65 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHh------c--C-CCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4455668888888877766665442211 0 1 12566999999999999999999998864
No 367
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.8e-08 Score=70.29 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=38.1
Q ss_pred hhccCCCH-HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHF-DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~-~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+... ....+++++++.| ++|+|+||||||||++.|+|.+.+.
T Consensus 326 l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~ 374 (559)
T COG4988 326 LSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT 374 (559)
T ss_pred eEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence 44445443 6788899999888 9999999999999999999988764
No 368
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.54 E-value=2.2e-08 Score=70.89 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||+|||||+++|+|.+.+.
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~ 77 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN 77 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 4678889988888 8899999999999999999987664
No 369
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.54 E-value=6.5e-08 Score=60.87 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=27.1
Q ss_pred hCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 47 IGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 47 ~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++.++.| ++|.||||+|||||++.|||...|.
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~ 52 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA 52 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC
Confidence 34455555 8999999999999999999987764
No 370
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.54 E-value=3.1e-08 Score=56.98 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=24.3
Q ss_pred HhhhCCCCCcc--eEEEcCCCCcHHHHHHHHH
Q psy6772 44 YKQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73 (80)
Q Consensus 44 ~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~ 73 (80)
++++++.+..+ ++|.||||||||||++++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 34556666665 8999999999999999976
No 371
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.53 E-value=1.7e-07 Score=62.54 Aligned_cols=58 Identities=34% Similarity=0.547 Sum_probs=39.3
Q ss_pred CCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 13 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+-+|+++.|.+.....+...+... ..-+ .....++|+||+|+|||+++++++.+++.
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~-------~~~~-~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAA-------KKRG-EALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHH-------HhcC-CCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 3457888888877666555433211 0001 12345899999999999999999998764
No 372
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.52 E-value=3.8e-08 Score=69.04 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=41.5
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+.....+++++|.+.+| .+|+|.||+|||||++.|+|.+.++
T Consensus 14 i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~ 61 (500)
T COG1129 14 ISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD 61 (500)
T ss_pred ceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC
Confidence 667777778899999999999 7999999999999999999998876
No 373
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.52 E-value=4.1e-08 Score=75.81 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=35.4
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++++++|.+++| ++|+||+||||||++++|.+.++|
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 35899999999998 999999999999999999999987
No 374
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.52 E-value=1.1e-07 Score=62.87 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=34.0
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.....+++|.+++| +.++||||+||||+++++.|-+-|+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~ 77 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT 77 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC
Confidence 34678899999999 7899999999999999999877664
No 375
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.52 E-value=1.3e-07 Score=59.34 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=23.4
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.++| ++|.||||||||||+++|++.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3555 78999999999999999998775
No 376
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.51 E-value=2.3e-08 Score=65.22 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=40.7
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+.......+++|.++.| +.|.||||+||||.+|+|.+.+.++
T Consensus 8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~ 55 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT 55 (300)
T ss_pred chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc
Confidence 566677778889999999999 6899999999999999999988875
No 377
>KOG0055|consensus
Probab=98.51 E-value=7.9e-08 Score=72.73 Aligned_cols=39 Identities=31% Similarity=0.548 Sum_probs=36.4
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.++.| ++|+|||||||||++++|.+.|+|+
T Consensus 366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~ 406 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT 406 (1228)
T ss_pred chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 36889999999999 9999999999999999999999986
No 378
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.3e-07 Score=62.83 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=39.4
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..+-+|+++.|.+.....+...+... ..+..++|+||+|+||||+++++++.+.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 344567888888887666555433211 1244589999999999999999998874
No 379
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.51 E-value=6.2e-08 Score=60.84 Aligned_cols=34 Identities=18% Similarity=0.435 Sum_probs=27.2
Q ss_pred HHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHH
Q psy6772 42 DLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 42 ~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~ 75 (80)
.+..++++...+-++|.||||+||||++++|++.
T Consensus 15 ~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 15 RVANDIDMEKKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred eecceEEEcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456666666555899999999999999999864
No 380
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.50 E-value=2.4e-07 Score=60.12 Aligned_cols=62 Identities=29% Similarity=0.439 Sum_probs=45.9
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
......+.++++.|.+.++..+.+.....+.. . ....++|+|++|||||++++++..++...
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--------~-pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQG--------L-PANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC--------C-CCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34456788999999999888877654333222 1 22349999999999999999999887653
No 381
>PRK13409 putative ATPase RIL; Provisional
Probab=98.50 E-value=5.1e-08 Score=69.65 Aligned_cols=36 Identities=31% Similarity=0.318 Sum_probs=30.4
Q ss_pred HhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 44 YKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 44 ~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++.+++.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~ 392 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD 392 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45666777777 8899999999999999999987664
No 382
>PRK07261 topology modulation protein; Provisional
Probab=98.50 E-value=1.4e-07 Score=57.95 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+|+|+||||||||++.|+..++++
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999887653
No 383
>PLN03025 replication factor C subunit; Provisional
Probab=98.49 E-value=3.3e-07 Score=60.96 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=36.7
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+++.+-+++++.+.+.....+...+.. .....++|+||||+||||+++++++++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345556677777776655544442111 112348899999999999999999886
No 384
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.49 E-value=2.7e-07 Score=62.70 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHHHhhccCCCHHHHhhhCCCC-CcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 19 DIGGMDMQKQEIREAVELPLTHFDLYKQIGIDP-PRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++-|++..+..+.+.+.... .+... ++.++|+||||+|||||+++|++.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57777766555444322211 12222 344899999999999999999988753
No 385
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.49 E-value=7.1e-08 Score=74.52 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=38.8
Q ss_pred hhccCCC---HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTH---FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~---~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|.. ..++++++|.++.| ++|+||||||||||+++|++.+.|.
T Consensus 388 Vsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 438 (1466)
T PTZ00265 388 VRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT 438 (1466)
T ss_pred EEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC
Confidence 4445542 25889999999998 8999999999999999999999875
No 386
>KOG0057|consensus
Probab=98.49 E-value=6.1e-08 Score=68.49 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=36.4
Q ss_pred ccCCCHH-HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 36 LPLTHFD-LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.+.. +++.++|.+++| ++|+|+|||||||++++|.+.++-
T Consensus 359 f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~ 404 (591)
T KOG0057|consen 359 FSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY 404 (591)
T ss_pred EEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3344444 889999999999 999999999999999999988764
No 387
>KOG0055|consensus
Probab=98.47 E-value=1.5e-07 Score=71.36 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=36.6
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVLC 80 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~~ 80 (80)
..+++++++.++.| ++|+||+||||||++.+|-+.|+|.+
T Consensus 1003 ~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 46899999999998 99999999999999999999998863
No 388
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3.2e-07 Score=64.33 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=40.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++..+-+|+++.|.+.....+...+... .++..++|+||+|+||||+++++|+.+.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4455667888888887666555433221 1234489999999999999999998875
No 389
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.46 E-value=1.4e-07 Score=58.33 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|+|||||||||++++|++.+++
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred EEEECCCCCCHHHHHHHHhccCCC
Confidence 789999999999999999987653
No 390
>KOG0060|consensus
Probab=98.46 E-value=7.6e-08 Score=68.50 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=34.3
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..-+.+++++.++.| ++|.||||||||+|+|.+++.|..
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~ 487 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS 487 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc
Confidence 445678899999888 999999999999999999999874
No 391
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.46 E-value=1.7e-07 Score=55.03 Aligned_cols=23 Identities=48% Similarity=0.878 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|++.|+|||||||+++.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 67899999999999999997664
No 392
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.46 E-value=2e-07 Score=57.87 Aligned_cols=25 Identities=44% Similarity=0.816 Sum_probs=22.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+|.||||+||||+++.|+..++.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999987754
No 393
>KOG0064|consensus
Probab=98.46 E-value=7.4e-08 Score=68.37 Aligned_cols=36 Identities=31% Similarity=0.562 Sum_probs=31.7
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+...++|.+..| ++|.||||||||+|.+++++-|++
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc
Confidence 557778888888 899999999999999999998875
No 394
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.45 E-value=2e-07 Score=56.96 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.|+|||||||+++.|+..++.
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~ 29 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGF 29 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999987764
No 395
>PLN03140 ABC transporter G family member; Provisional
Probab=98.44 E-value=7.5e-08 Score=74.40 Aligned_cols=40 Identities=30% Similarity=0.338 Sum_probs=35.2
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+++++++.++.| ++|.||||+|||||+++|++.+.++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~ 218 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPS 218 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 456889999999888 8999999999999999999988653
No 396
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.44 E-value=1.1e-07 Score=59.76 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=37.3
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|....-..+++|..-.| +.|+|.+|||||||+++|++++.|.
T Consensus 12 lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~ 59 (258)
T COG4107 12 LSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD 59 (258)
T ss_pred hhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC
Confidence 444555555667788888777 7899999999999999999988764
No 397
>PRK03839 putative kinase; Provisional
Probab=98.44 E-value=2.3e-07 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+|.|+|||||||+++.|+..++..
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~ 27 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYE 27 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999988753
No 398
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.44 E-value=1.2e-07 Score=61.01 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.4
Q ss_pred Ccc-eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 52 PRG-VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 52 ~~g-i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+ .+|+|||||||||++++|+..+++
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 344 789999999999999999988765
No 399
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.43 E-value=8.2e-08 Score=68.76 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=34.6
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+.+++++++.+.+| ++|.||||+|||||+++|+++..+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~ 77 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK 77 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 455889999999999 899999999999999999998754
No 400
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.43 E-value=5.1e-07 Score=51.93 Aligned_cols=25 Identities=60% Similarity=1.135 Sum_probs=22.5
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...++|+||+|+|||++++.+++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4459999999999999999999876
No 401
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.43 E-value=2.5e-07 Score=56.65 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+|+|+|||||||+++.|+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~ 26 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 6789999999999999999998753
No 402
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.42 E-value=1.1e-07 Score=66.88 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+++++|.+..| ++|+||||+|||||+++|.+-|.+.
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~ 389 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT 389 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC
Confidence 34678888888887 8999999999999999999988764
No 403
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.42 E-value=1.2e-07 Score=67.86 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=33.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+++++++.++.| ++|.|+||||||||+|+|||-|+.
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc
Confidence 36778888888888 999999999999999999998753
No 404
>PRK14530 adenylate kinase; Provisional
Probab=98.42 E-value=2.6e-07 Score=58.27 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.|+|+|||||||||+++.|+..++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~ 30 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 48999999999999999999998863
No 405
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=5.4e-07 Score=63.40 Aligned_cols=54 Identities=28% Similarity=0.451 Sum_probs=39.9
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+..+-+|+++.|.+.....+.+.+... .++..++|+||+|+||||+++++|+.+
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHH
Confidence 455667889888887666555432221 234569999999999999999999865
No 406
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=6.2e-07 Score=63.29 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=40.3
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++..+-+|+++.|.+.....+...+... .++..++|+||+|+||||+++++++.+.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456667888888877665554432211 2345699999999999999999999875
No 407
>KOG0744|consensus
Probab=98.41 E-value=1.7e-07 Score=63.24 Aligned_cols=28 Identities=50% Similarity=0.695 Sum_probs=23.8
Q ss_pred CCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 50 DPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 50 ~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+.+-|+|+||||+|||+|++++|+.+-
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 3455589999999999999999998764
No 408
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.41 E-value=4.2e-07 Score=54.78 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.2
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+..|+|+|++||||||+++.++..++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~ 31 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYD 31 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3458999999999999999999988753
No 409
>PLN03232 ABC transporter C family member; Provisional
Probab=98.41 E-value=1.4e-07 Score=72.94 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=38.7
Q ss_pred hhccCCC--HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTH--FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~--~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|.. +.+++++++.+++| ++|+|++|+|||||+++|.+.++++
T Consensus 1240 Vsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~ 1289 (1495)
T PLN03232 1240 VHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE 1289 (1495)
T ss_pred EEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 3444432 45899999999999 9999999999999999999998875
No 410
>PRK06893 DNA replication initiation factor; Validated
Probab=98.40 E-value=2.6e-07 Score=58.97 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..++|+||+|||||+|+++++.++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 347999999999999999999875
No 411
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.40 E-value=7.1e-07 Score=59.00 Aligned_cols=53 Identities=30% Similarity=0.389 Sum_probs=35.9
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+.+-+|+++.+.+.....+...+.. .....++|+||+|+||||+++++++++.
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445577777766655555443221 1123589999999999999999998764
No 412
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.40 E-value=3.1e-07 Score=54.03 Aligned_cols=24 Identities=54% Similarity=0.779 Sum_probs=21.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|+||+|||||++++.++..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~ 25 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR 25 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999987753
No 413
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.40 E-value=8.4e-08 Score=59.00 Aligned_cols=45 Identities=31% Similarity=0.463 Sum_probs=35.8
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+...+...-++.++++.+-+| +-|.||+|||||||+.-+++.+..
T Consensus 8 vsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~ 54 (213)
T COG4136 8 VSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAG 54 (213)
T ss_pred eeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhccc
Confidence 344455556777788888888 679999999999999999987754
No 414
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=7.4e-07 Score=61.03 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=39.0
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..+-+|+++.|.+.....+...+... .++..++|+||+|+||||+++++|+.+.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 445567888888776665554432211 2344589999999999999999998874
No 415
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.39 E-value=3.7e-07 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.|||||||||+++.|+..++.
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCc
Confidence 689999999999999999987653
No 416
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.39 E-value=1.2e-07 Score=68.34 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=33.8
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+..| ++|.||||+|||||+++|++.+.++
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~ 61 (648)
T PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT 61 (648)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4788889888888 8999999999999999999988764
No 417
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.5e-07 Score=63.12 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=40.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++..+.+|+++.|.+.....+...+... ..+..++|+||+|+||||+++++++.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455677889988887766665543321 1233479999999999999999998874
No 418
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.39 E-value=1e-06 Score=58.09 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+++.+-+|+++.+.+.....+...+.. -..+..++|+||+|+|||+++++++.+++
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK------------GRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 455566788887777766655554321 11233466799999999999999998764
No 419
>PRK13949 shikimate kinase; Provisional
Probab=98.38 E-value=3.9e-07 Score=55.89 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=23.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.|+|+|+||+||||+++.||+.++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~ 28 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLS 28 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 48899999999999999999988754
No 420
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.38 E-value=6e-07 Score=61.97 Aligned_cols=26 Identities=46% Similarity=0.768 Sum_probs=23.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+++|+||+|||||+++++|+..++.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 44999999999999999999988764
No 421
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5.5e-07 Score=66.96 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=39.9
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..+-+|+++.|.+..+..+...+... .++..++|+||+|+||||+++++++.+.
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 445567888888887766555433221 1244478999999999999999998875
No 422
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.38 E-value=2.5e-07 Score=61.79 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=32.9
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...++++|.+.+| ++|+|.||||||+++++|.+.+.
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4678899999998 89999999999999999999887
No 423
>PRK14532 adenylate kinase; Provisional
Probab=98.38 E-value=3.7e-07 Score=56.25 Aligned_cols=25 Identities=32% Similarity=0.704 Sum_probs=22.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+|+|||||||||+++.|+..++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~ 27 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMV 27 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 7899999999999999999988754
No 424
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.37 E-value=4e-07 Score=58.05 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+|+||||+|||||+++|+.-+
T Consensus 26 ~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 26 NVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998544
No 425
>PTZ00243 ABC transporter; Provisional
Probab=98.37 E-value=1.2e-07 Score=73.57 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=34.6
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||||||||||+++|++.+.++
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~ 713 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS 713 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 34678889999898 8999999999999999999998764
No 426
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.37 E-value=4.5e-07 Score=62.85 Aligned_cols=60 Identities=27% Similarity=0.439 Sum_probs=36.6
Q ss_pred ccchHHHHHHHHHHhhccCCCHHHHhhhCCC-CCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 20 IGGMDMQKQEIREAVELPLTHFDLYKQIGID-PPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.|.+..+..+...+..++....+.....-. .+.+++|+||+|||||++++.|++.++.+
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 5666666665555443322211111111101 24569999999999999999999988754
No 427
>PLN03130 ABC transporter C family member; Provisional
Probab=98.37 E-value=2e-07 Score=72.58 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=35.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||+|||||||+++|.+++.+.
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~ 670 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR 670 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC
Confidence 34788999999999 8999999999999999999999875
No 428
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=7.4e-07 Score=64.63 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=40.7
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..+-+|+++.|.+.....+...+... .....++|+||+|+||||+++++|+.+.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445567888888887766665543311 2345589999999999999999999875
No 429
>PRK14531 adenylate kinase; Provisional
Probab=98.37 E-value=5.2e-07 Score=55.68 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=24.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..|+++|||||||||+++.|+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~ 29 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLR 29 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 348899999999999999999998764
No 430
>PLN03232 ABC transporter C family member; Provisional
Probab=98.37 E-value=1.5e-07 Score=72.76 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=35.0
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++.+++| ++|+||+|||||||+++|.+++.+.
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~ 670 (1495)
T PLN03232 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA 670 (1495)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc
Confidence 4688999999999 8999999999999999999999875
No 431
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.36 E-value=2.3e-07 Score=58.02 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=33.2
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.++.| +.|.||+|+||||+++++-+.|.+.
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d 64 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD 64 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC
Confidence 4678889999888 9999999999999999998877654
No 432
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.36 E-value=3.7e-07 Score=57.65 Aligned_cols=41 Identities=15% Similarity=0.426 Sum_probs=37.1
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHH
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~ 74 (80)
+...|...++++.+++....| |.|+|.+||||||++++|.=
T Consensus 12 lHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~ 54 (256)
T COG4598 12 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF 54 (256)
T ss_pred HHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHh
Confidence 677788889999999999999 88999999999999999963
No 433
>KOG0066|consensus
Probab=98.36 E-value=3.8e-07 Score=64.11 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=36.6
Q ss_pred hhccC-CCHHHHhhhCCCC--CcceEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy6772 34 VELPL-THFDLYKQIGIDP--PRGVLLYGPPGCGKTMLAKAVAHHTTVLC 80 (80)
Q Consensus 34 ~~~~~-~~~~~~~~~~~~~--~~gi~l~Gp~G~GKTtl~~~i~~~~~~~~ 80 (80)
+.+.| ....+|..++|.+ ...|+|+||||+|||||++++.+.+.|+.
T Consensus 592 VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~ 641 (807)
T KOG0066|consen 592 VTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND 641 (807)
T ss_pred ccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc
Confidence 45555 3445777776655 44599999999999999999999999873
No 434
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.36 E-value=2.1e-07 Score=59.30 Aligned_cols=28 Identities=39% Similarity=0.675 Sum_probs=24.9
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHH
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLA 69 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~ 69 (80)
..+++++|.+++| ++|+|+||||||||+
T Consensus 9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 4667888999999 899999999999996
No 435
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.36 E-value=1.7e-07 Score=72.51 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=34.4
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+++| ++|.||+|||||||+++|+|.+.+.
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~ 479 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS 479 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4788999999998 8999999999999999999998764
No 436
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.36 E-value=1.1e-06 Score=62.14 Aligned_cols=24 Identities=46% Similarity=0.796 Sum_probs=22.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.||+||||||+++.||+++++
T Consensus 48 LlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 788999999999999999999876
No 437
>KOG0062|consensus
Probab=98.36 E-value=2.1e-07 Score=65.58 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=35.5
Q ss_pred HhhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHH
Q psy6772 33 AVELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~ 74 (80)
.+...+..+.++..-++...+| +.|+|+||+|||||+++|+.
T Consensus 85 ~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 85 NFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3666777788887777777666 99999999999999999997
No 438
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.35 E-value=5.4e-07 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+|+|++||||||+++.++..++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~ 26 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP 26 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999887753
No 439
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.35 E-value=3e-07 Score=64.50 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=25.7
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHH
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAK 70 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~ 70 (80)
.+++++++.+..| ++|+||||||||||++
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3567888888888 8999999999999999
No 440
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.35 E-value=1.8e-07 Score=72.56 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=34.6
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+++| ++|+||+|||||||+++|++++.+.
T Consensus 652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~ 691 (1522)
T TIGR00957 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 691 (1522)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC
Confidence 4788999999998 8999999999999999999998765
No 441
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=7.5e-07 Score=62.89 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..+-+|+++.|.+.....+...+... ..+..++|+||+|+||||+++++++.+.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 345567888888887776666544221 2344589999999999999999999874
No 442
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.35 E-value=4.8e-07 Score=56.30 Aligned_cols=23 Identities=39% Similarity=0.736 Sum_probs=21.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+||+|||||||++.|++.++
T Consensus 8 i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 8 IVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEECCCCCCHHHHHHHHHhhCc
Confidence 89999999999999999999874
No 443
>PRK06620 hypothetical protein; Validated
Probab=98.35 E-value=4.6e-07 Score=57.56 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+.++|+||+|||||+|+++++...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 4599999999999999999987654
No 444
>KOG0989|consensus
Probab=98.34 E-value=1.2e-06 Score=58.63 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=35.5
Q ss_pred CCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 13 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+-+|+++.+.+.....+...+.. .....+++|||||+|||+.+++++.++..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 334466666666555544443211 12344899999999999999999988764
No 445
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.34 E-value=5.1e-07 Score=56.53 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.||+||||||+++++++.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 789999999999999999988764
No 446
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.34 E-value=6.2e-07 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+|.|++||||||+++.|+..++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~ 26 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLP 26 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6799999999999999999988754
No 447
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.34 E-value=5.5e-07 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=21.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.|+|||||||++++|++.+.+
T Consensus 6 i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 789999999999999999998764
No 448
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.33 E-value=1e-06 Score=52.50 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=23.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++|.|+.|+||||+++.+++.++..
T Consensus 25 i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 8899999999999999999998764
No 449
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.33 E-value=1.5e-06 Score=55.15 Aligned_cols=48 Identities=40% Similarity=0.625 Sum_probs=31.1
Q ss_pred ccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 16 QYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+|.+|.|.+..+..+.-.. .+ ..+++|+||||+|||++++.|..-+.+
T Consensus 1 Df~dI~GQe~aKrAL~iAA------------aG---~h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAA------------AG---GHHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHH------------HC---C--EEEES-CCCTHHHHHHHHHHCS--
T ss_pred ChhhhcCcHHHHHHHHHHH------------cC---CCCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 4677888877665443321 11 246999999999999999999876654
No 450
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.3e-06 Score=60.02 Aligned_cols=58 Identities=26% Similarity=0.420 Sum_probs=42.1
Q ss_pred ccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 16 QYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.|+++.|.+..+..+...+...... +..++...+.+++|+||+|+|||++++.+|+.+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4788889888877777766543321 222333345669999999999999999999865
No 451
>PRK06217 hypothetical protein; Validated
Probab=98.32 E-value=6.6e-07 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+|.|++||||||+++.|+..++.+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~ 28 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIP 28 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCc
Confidence 8899999999999999999988753
No 452
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.31 E-value=1.2e-06 Score=63.25 Aligned_cols=24 Identities=33% Similarity=0.764 Sum_probs=22.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|+||+||||||++++++++++.
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 889999999999999999998764
No 453
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.1e-06 Score=62.53 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=38.5
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..+-+|+++.|.+.....+...+... ..+..++|+||+|+||||+++.+++.+.
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567888888877665555433221 1234488999999999999999998764
No 454
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.31 E-value=7e-07 Score=54.90 Aligned_cols=24 Identities=42% Similarity=0.740 Sum_probs=22.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|+|+|||||||+++.|+..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~ 25 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL 25 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999998765
No 455
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.31 E-value=9.8e-07 Score=60.96 Aligned_cols=26 Identities=46% Similarity=0.774 Sum_probs=23.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++|+||+|||||+++++|+..++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNV 142 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCC
Confidence 34999999999999999999988764
No 456
>PRK13947 shikimate kinase; Provisional
Probab=98.31 E-value=7.8e-07 Score=53.87 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.|+|.|++||||||+++.||..++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999988763
No 457
>PRK02496 adk adenylate kinase; Provisional
Probab=98.30 E-value=8e-07 Score=54.63 Aligned_cols=24 Identities=38% Similarity=0.762 Sum_probs=22.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.|||||||||+++.|+..++.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~ 27 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHI 27 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 788999999999999999998865
No 458
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.30 E-value=1.1e-06 Score=45.97 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+|+|+||+||||++.+|.--+
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999987543
No 459
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.30 E-value=8.6e-07 Score=55.13 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.||+||||||+++.|+..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 678999999999999999998874
No 460
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.29 E-value=5.7e-07 Score=54.90 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=20.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+|||||||||+++.|++.+
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEECCCCCCHHHHHHHHHccC
Confidence 7899999999999999999865
No 461
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.29 E-value=7e-07 Score=55.96 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|.|+||||||||++.|++.+
T Consensus 9 I~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999987
No 462
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.29 E-value=7.9e-07 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.|+||+||||+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC
Confidence 578999999999999999988653
No 463
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.29 E-value=7.3e-07 Score=55.41 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|.||+||||||+++.|++.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999875
No 464
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.29 E-value=4.1e-07 Score=56.94 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=32.9
Q ss_pred CCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 39 THFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 39 ~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
....+++.+++.+.+| ++|+||+|+|||||+-.+|+--.+
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ 62 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP 62 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC
Confidence 3445678888888888 999999999999999999976544
No 465
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.3e-06 Score=63.60 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=41.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++..+-+|+++.|.+.....+...+... .++.+++|+||+|+||||+++++++.+.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3455667889988888777666643321 2345689999999999999999999764
No 466
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.29 E-value=8.3e-07 Score=55.81 Aligned_cols=25 Identities=40% Similarity=0.675 Sum_probs=22.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+|+|||||||||+++.|+..++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~ 26 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLP 26 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 7899999999999999999988754
No 467
>PRK14527 adenylate kinase; Provisional
Probab=98.29 E-value=1.3e-06 Score=54.22 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++++|||||||||+++.|+..++..
T Consensus 9 i~i~G~pGsGKsT~a~~La~~~~~~ 33 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQELGLK 33 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 8899999999999999999887653
No 468
>KOG0056|consensus
Probab=98.29 E-value=4.3e-07 Score=64.39 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=38.6
Q ss_pred hhccCC-CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLT-HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~-~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|. .+.++.+++|.+..| ++|+||+|+||||+++.+-+.++++
T Consensus 543 vtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 543 VTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred eEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc
Confidence 344443 356789999999888 9999999999999999999998876
No 469
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.4e-06 Score=61.70 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=39.3
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..+-+|+++.|.+.....+...+... ..+..++|+||+|+||||+++++++.+.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34457888888887766655543321 2234588999999999999999998874
No 470
>PRK08233 hypothetical protein; Provisional
Probab=98.28 E-value=8.2e-07 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|+..++
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 77889999999999999998875
No 471
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.28 E-value=7.5e-07 Score=56.76 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|.|+|||||||+++.|++.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 57889999999999999998874
No 472
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.27 E-value=1.8e-07 Score=74.25 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=34.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+.+| ++|.||||+|||||+++|+|.+.++
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt 1992 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT 1992 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 34788899999999 8999999999999999999988765
No 473
>PRK09183 transposase/IS protein; Provisional
Probab=98.27 E-value=8.4e-07 Score=57.79 Aligned_cols=23 Identities=43% Similarity=0.714 Sum_probs=20.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.++|+||+|+|||+|+.+|+...
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998654
No 474
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.27 E-value=1.3e-06 Score=53.62 Aligned_cols=26 Identities=31% Similarity=0.717 Sum_probs=23.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..|+|+|++|+||||+++.|++.++.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~ 30 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 44899999999999999999988764
No 475
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.27 E-value=2.6e-06 Score=55.91 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=36.2
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++.+.+|+++.+.+.....+...+... ....++|+||+|+|||++++.+++++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344456777777766555555433211 11248999999999999999999875
No 476
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.27 E-value=1.1e-06 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+++.|++|+||||+++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999884
No 477
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.27 E-value=8.7e-07 Score=57.05 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=34.4
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+..+++.+..+ +.+.|.||+|||||++.|+|.+.++
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t 59 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT 59 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC
Confidence 45778888999888 7889999999999999999998775
No 478
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.26 E-value=1.1e-06 Score=64.45 Aligned_cols=25 Identities=44% Similarity=0.658 Sum_probs=22.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.++|+||||||||+++++||+.++.
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4899999999999999999998864
No 479
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.26 E-value=8.5e-07 Score=55.81 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=28.1
Q ss_pred hhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 45 ~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++..+..| +-++||||+|||||+..||+.+...
T Consensus 16 ~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s 52 (248)
T COG4138 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS 52 (248)
T ss_pred cccccccccceEEEEECCCCccHHHHHHHHhCCCCCC
Confidence 3455666677 5689999999999999999987654
No 480
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.26 E-value=1.6e-06 Score=59.58 Aligned_cols=26 Identities=46% Similarity=0.852 Sum_probs=22.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++|+||+|+||||++++|+...+.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~ 62 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDA 62 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35889999999999999999987653
No 481
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.26 E-value=3.9e-07 Score=70.68 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=35.9
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+++++++.+++| ++|+|++|+|||||+++|.+.++++
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~ 1339 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC
Confidence 35889999999999 9999999999999999999998875
No 482
>PLN03130 ABC transporter C family member; Provisional
Probab=98.26 E-value=3.8e-07 Score=71.11 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=35.3
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+++| ++|+|++|+|||||+++|.+.++++
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~ 1292 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence 5789999999999 9999999999999999999998875
No 483
>PRK06762 hypothetical protein; Provisional
Probab=98.26 E-value=1.1e-06 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
-++|.|++||||||+++.++..++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998874
No 484
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.26 E-value=2.2e-06 Score=57.19 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=40.9
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++..+-.|+++.|.+..+..+.+.+... ..+..++|+||+|+|||++++.+++.+.
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445677888888887776666544321 1234588999999999999999998764
No 485
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.26 E-value=8.5e-07 Score=54.60 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|.+.|||||||||+++.||.+++..
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCc
Confidence 6789999999999999999999865
No 486
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.26 E-value=1.1e-06 Score=56.50 Aligned_cols=26 Identities=27% Similarity=0.655 Sum_probs=23.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.|+|+|||||||||+++.|+..++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~ 33 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLK 33 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 38999999999999999999998763
No 487
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1.9e-06 Score=61.95 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=39.2
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..+-+|+++.|.+.....+...+... ..+.+++|+||+|+||||+++++|+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 445567888888777665555432211 2345589999999999999999998863
No 488
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.25 E-value=6.9e-07 Score=55.83 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=21.8
Q ss_pred hCCCCCcc---eEEEcCCCCcHHHHHHHHH
Q psy6772 47 IGIDPPRG---VLLYGPPGCGKTMLAKAVA 73 (80)
Q Consensus 47 ~~~~~~~g---i~l~Gp~G~GKTtl~~~i~ 73 (80)
+++.+..+ ++|.||||+|||||++.|+
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 44444443 8999999999999999988
No 489
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.25 E-value=2.8e-07 Score=71.07 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=33.1
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...+++++++.+..| ++|.||||+|||||+++|++..
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~ 111 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNT 111 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 345889999988888 8999999999999999999975
No 490
>PRK00625 shikimate kinase; Provisional
Probab=98.25 E-value=1.3e-06 Score=54.00 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+|+|.|||||||+++.++..++.+
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~ 27 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLP 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999987753
No 491
>PTZ00243 ABC transporter; Provisional
Probab=98.25 E-value=4.1e-07 Score=70.72 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=35.6
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.++++++|.+++| ++|+|++|+|||||+++|.+.++++
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~ 1363 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC 1363 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34789999999999 9999999999999999999998875
No 492
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.24 E-value=1e-06 Score=56.49 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..++|+||+|||||+|+++++.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999997643
No 493
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.24 E-value=1.1e-06 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 67899999999999999998764
No 494
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.24 E-value=8e-07 Score=55.56 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHH
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~ 74 (80)
-++|.||||+||||++++|+.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 389999999999999999983
No 495
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.4e-06 Score=56.93 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=39.6
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..+-+|+++.|.+.....+.+.+... ..+..++|+||+|+|||++++.++..+.
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345567888888777665555543321 2345689999999999999999998764
No 496
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.2e-06 Score=61.80 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=39.5
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..+.+|+++.|.+.....+...+... .++.+++|+||+|+||||+++.+|+.+.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 445567888888777665554432211 2345589999999999999999998874
No 497
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.23 E-value=1.4e-06 Score=54.99 Aligned_cols=25 Identities=40% Similarity=0.688 Sum_probs=22.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|+++|||||||||+++.|+..++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~ 27 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIP 27 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999988753
No 498
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.23 E-value=1.2e-06 Score=55.83 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=22.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.||||+|||||++.|++.+.+
T Consensus 36 igi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 36 VGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 889999999999999999988764
No 499
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.23 E-value=1.1e-06 Score=55.67 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+||||+||||++++|..-+
T Consensus 28 ~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998443
No 500
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.4e-06 Score=61.24 Aligned_cols=55 Identities=22% Similarity=0.417 Sum_probs=39.3
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..+-+|+++.|.+.....+...+... .++..++|+||+|+||||+++++++.+.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344567888888877666555533221 1334478999999999999999998765
Done!