Query psy6772
Match_columns 80
No_of_seqs 106 out of 1360
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:00:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.8 1.1E-18 3.7E-23 118.1 6.5 71 9-79 139-209 (405)
2 4b4t_L 26S protease subunit RP 99.7 3E-18 1E-22 116.9 6.1 70 10-79 173-242 (437)
3 4b4t_K 26S protease regulatory 99.7 4.3E-18 1.5E-22 115.8 6.5 70 10-79 164-233 (428)
4 4b4t_M 26S protease regulatory 99.7 4.2E-18 1.5E-22 116.0 6.0 70 10-79 173-242 (434)
5 4b4t_I 26S protease regulatory 99.7 4.4E-18 1.5E-22 115.8 6.0 71 9-79 173-243 (437)
6 4b4t_H 26S protease regulatory 99.7 4.7E-18 1.6E-22 116.5 6.0 70 10-79 201-270 (467)
7 2x8a_A Nuclear valosin-contain 99.7 6.5E-17 2.2E-21 104.2 5.8 68 11-78 3-70 (274)
8 3cf2_A TER ATPase, transitiona 99.6 1E-15 3.6E-20 110.4 3.0 71 9-79 195-265 (806)
9 3cf0_A Transitional endoplasmi 99.5 2.4E-14 8.1E-19 92.9 6.2 70 9-78 6-75 (301)
10 1ixz_A ATP-dependent metallopr 99.5 4.9E-14 1.7E-18 88.9 6.9 68 9-77 7-74 (254)
11 1iy2_A ATP-dependent metallopr 99.5 2.1E-13 7.1E-18 87.3 7.5 67 10-77 32-98 (278)
12 3h4m_A Proteasome-activating n 99.4 1.7E-13 5.7E-18 87.4 6.4 69 10-78 9-77 (285)
13 3cf2_A TER ATPase, transitiona 99.4 6.3E-14 2.2E-18 101.2 4.7 70 10-79 469-538 (806)
14 1lv7_A FTSH; alpha/beta domain 99.4 2.8E-13 9.5E-18 85.6 4.9 67 11-78 5-71 (257)
15 1xwi_A SKD1 protein; VPS4B, AA 99.4 2.8E-13 9.5E-18 88.8 4.1 65 11-76 5-69 (322)
16 2qz4_A Paraplegin; AAA+, SPG7, 99.4 6.1E-13 2.1E-17 83.6 5.3 65 13-78 1-65 (262)
17 2ce7_A Cell division protein F 99.4 1.5E-12 5.2E-17 89.6 7.2 67 12-79 10-76 (476)
18 2r62_A Cell division protease 99.3 8.2E-13 2.8E-17 83.7 4.7 68 10-78 3-70 (268)
19 3eie_A Vacuolar protein sortin 99.3 6.7E-13 2.3E-17 86.6 4.0 69 9-78 9-77 (322)
20 2dhr_A FTSH; AAA+ protein, hex 99.3 1.2E-12 3.9E-17 90.6 5.1 65 13-78 26-90 (499)
21 2qp9_X Vacuolar protein sortin 99.3 1.3E-12 4.4E-17 86.6 3.6 68 10-78 43-110 (355)
22 1ypw_A Transitional endoplasmi 99.3 9.6E-13 3.3E-17 94.9 2.7 68 11-78 197-264 (806)
23 3b9p_A CG5977-PA, isoform A; A 99.3 3.8E-12 1.3E-16 81.6 5.1 69 9-78 12-80 (297)
24 3hu3_A Transitional endoplasmi 99.2 1.1E-11 3.6E-16 85.5 6.2 66 13-78 199-264 (489)
25 2zan_A Vacuolar protein sortin 99.2 7.5E-12 2.6E-16 85.1 4.6 67 9-76 125-191 (444)
26 3d8b_A Fidgetin-like protein 1 99.2 1.9E-11 6.6E-16 80.9 4.3 68 10-78 76-143 (357)
27 1ypw_A Transitional endoplasmi 99.1 2E-11 6.8E-16 88.1 3.2 70 10-79 469-538 (806)
28 3vfd_A Spastin; ATPase, microt 99.1 3.7E-11 1.3E-15 80.1 4.3 68 10-78 107-174 (389)
29 1htw_A HI0065; nucleotide-bind 99.0 8.9E-11 3.1E-15 70.4 3.0 36 41-76 20-57 (158)
30 1g6h_A High-affinity branched- 99.0 1.5E-11 5.1E-16 78.6 -1.7 45 35-79 14-60 (257)
31 1b0u_A Histidine permease; ABC 99.0 1.4E-11 4.9E-16 78.9 -1.8 44 36-79 14-59 (262)
32 2pcj_A ABC transporter, lipopr 99.0 1.1E-11 3.9E-16 77.7 -2.5 44 36-79 12-57 (224)
33 1mv5_A LMRA, multidrug resista 99.0 2.7E-11 9.1E-16 76.8 -0.8 40 40-79 14-55 (243)
34 2olj_A Amino acid ABC transpor 99.0 1.8E-11 6.1E-16 78.7 -1.8 45 35-79 31-77 (263)
35 4g1u_C Hemin import ATP-bindin 99.0 1.5E-11 5E-16 79.1 -2.4 46 34-79 17-64 (266)
36 1sgw_A Putative ABC transporte 99.0 2.3E-11 7.8E-16 76.2 -1.5 44 35-79 17-62 (214)
37 1ji0_A ABC transporter; ATP bi 99.0 1.6E-11 5.5E-16 77.8 -2.4 44 36-79 14-59 (240)
38 3fvq_A Fe(3+) IONS import ATP- 99.0 2.7E-11 9.3E-16 80.9 -1.5 45 35-79 11-57 (359)
39 1vpl_A ABC transporter, ATP-bi 99.0 2.4E-11 8.2E-16 77.8 -1.8 44 36-79 23-68 (256)
40 2ihy_A ABC transporter, ATP-bi 99.0 2E-11 6.9E-16 79.0 -2.3 45 35-79 28-74 (279)
41 2ixe_A Antigen peptide transpo 99.0 4.4E-11 1.5E-15 77.0 -0.9 39 41-79 32-72 (271)
42 1z47_A CYSA, putative ABC-tran 99.0 5.7E-11 1.9E-15 79.3 -0.6 45 35-79 21-68 (355)
43 3tif_A Uncharacterized ABC tra 99.0 9E-11 3.1E-15 74.1 0.3 37 43-79 20-58 (235)
44 2it1_A 362AA long hypothetical 98.9 5.4E-11 1.9E-15 79.5 -0.7 45 35-79 10-56 (362)
45 3rlf_A Maltose/maltodextrin im 98.9 4.2E-11 1.4E-15 80.6 -1.3 45 35-79 10-56 (381)
46 2pze_A Cystic fibrosis transme 98.9 4.1E-11 1.4E-15 75.4 -1.3 39 41-79 21-61 (229)
47 2ff7_A Alpha-hemolysin translo 98.9 3.2E-11 1.1E-15 76.7 -1.9 39 41-79 22-62 (247)
48 1z6g_A Guanylate kinase; struc 98.9 5.2E-10 1.8E-14 69.6 3.4 35 42-76 11-47 (218)
49 3gfo_A Cobalt import ATP-bindi 98.9 3.9E-11 1.3E-15 77.5 -1.8 37 43-79 23-61 (275)
50 2yyz_A Sugar ABC transporter, 98.9 5.2E-11 1.8E-15 79.6 -1.4 44 36-79 11-56 (359)
51 2cbz_A Multidrug resistance-as 98.9 3.2E-11 1.1E-15 76.3 -2.3 38 41-78 18-57 (237)
52 2nq2_C Hypothetical ABC transp 98.9 3.9E-11 1.3E-15 76.6 -2.1 40 40-79 17-58 (253)
53 3d31_A Sulfate/molybdate ABC t 98.9 7.1E-11 2.4E-15 78.6 -0.9 44 35-79 8-53 (348)
54 2jeo_A Uridine-cytidine kinase 98.9 7.5E-10 2.6E-14 69.7 3.7 37 41-77 12-50 (245)
55 1v43_A Sugar-binding transport 98.9 6.3E-11 2.2E-15 79.5 -1.3 45 35-79 18-64 (372)
56 3ec2_A DNA replication protein 98.9 3.7E-09 1.3E-13 63.4 6.6 32 45-76 31-62 (180)
57 1oxx_K GLCV, glucose, ABC tran 98.9 5.2E-11 1.8E-15 79.3 -2.1 44 36-79 11-58 (353)
58 1g29_1 MALK, maltose transport 98.9 6.1E-11 2.1E-15 79.5 -1.9 44 36-79 11-56 (372)
59 2zu0_C Probable ATP-dependent 98.9 9.6E-11 3.3E-15 75.3 -1.4 41 35-75 27-69 (267)
60 2yz2_A Putative ABC transporte 98.9 2.9E-10 9.8E-15 73.0 0.3 38 42-79 21-60 (266)
61 2v9p_A Replication protein E1; 98.9 1.7E-09 5.7E-14 70.9 3.9 36 41-76 113-150 (305)
62 2d2e_A SUFC protein; ABC-ATPas 98.9 9.6E-11 3.3E-15 74.6 -1.9 39 37-75 12-52 (250)
63 3nh6_A ATP-binding cassette SU 98.9 9.9E-11 3.4E-15 76.7 -2.0 39 41-79 67-107 (306)
64 2qi9_C Vitamin B12 import ATP- 98.9 2E-10 6.9E-15 73.2 -0.6 36 43-78 15-52 (249)
65 2c9o_A RUVB-like 1; hexameric 98.8 9.9E-09 3.4E-13 69.8 7.5 58 12-77 31-88 (456)
66 2ghi_A Transport protein; mult 98.8 3.1E-10 1E-14 72.7 -0.5 37 42-78 34-72 (260)
67 3vaa_A Shikimate kinase, SK; s 98.8 3.2E-09 1.1E-13 64.8 3.9 36 43-78 14-51 (199)
68 3tui_C Methionine import ATP-b 98.8 8.2E-10 2.8E-14 74.0 0.9 38 42-79 42-81 (366)
69 3t15_A Ribulose bisphosphate c 98.8 4.5E-09 1.5E-13 68.0 4.3 32 48-79 32-63 (293)
70 3b5x_A Lipid A export ATP-bind 98.8 1.3E-09 4.4E-14 76.2 1.8 46 34-79 347-396 (582)
71 1g41_A Heat shock protein HSLU 98.8 3.8E-09 1.3E-13 72.3 4.0 61 19-79 16-77 (444)
72 3gd7_A Fusion complex of cysti 98.8 3.9E-10 1.3E-14 76.0 -1.1 43 35-77 26-72 (390)
73 2bbs_A Cystic fibrosis transme 98.8 5.6E-10 1.9E-14 72.6 -0.3 37 42-78 52-90 (290)
74 3b9q_A Chloroplast SRP recepto 98.8 3.3E-09 1.1E-13 69.2 3.1 33 46-78 92-126 (302)
75 3syl_A Protein CBBX; photosynt 98.8 9.8E-09 3.3E-13 65.8 5.2 57 19-76 32-91 (309)
76 2pjz_A Hypothetical protein ST 98.8 9.1E-10 3.1E-14 70.7 0.3 36 42-79 19-56 (263)
77 3tr0_A Guanylate kinase, GMP k 98.8 5.5E-09 1.9E-13 63.4 3.7 26 51-76 4-31 (205)
78 3nwj_A ATSK2; P loop, shikimat 98.7 4E-09 1.4E-13 67.3 2.6 44 35-78 25-74 (250)
79 3lnc_A Guanylate kinase, GMP k 98.7 2.4E-09 8.3E-14 66.6 1.5 36 41-76 14-52 (231)
80 1in4_A RUVB, holliday junction 98.7 4.4E-09 1.5E-13 69.0 2.7 26 53-78 52-77 (334)
81 4gp7_A Metallophosphoesterase; 98.7 4E-09 1.4E-13 63.3 2.2 25 47-71 2-28 (171)
82 2dpy_A FLII, flagellum-specifi 98.7 1.2E-08 4.1E-13 69.6 4.7 45 34-79 137-184 (438)
83 1znw_A Guanylate kinase, GMP k 98.7 8.5E-09 2.9E-13 63.3 3.4 27 50-76 16-44 (207)
84 2og2_A Putative signal recogni 98.7 1.1E-08 3.8E-13 68.3 4.0 33 46-78 149-183 (359)
85 1ye8_A Protein THEP1, hypothet 98.7 1.1E-08 3.9E-13 62.1 3.3 23 55-77 3-25 (178)
86 2onk_A Molybdate/tungstate ABC 98.7 8.3E-09 2.8E-13 65.4 2.5 36 44-79 15-51 (240)
87 3b60_A Lipid A export ATP-bind 98.7 1.7E-09 5.8E-14 75.5 -0.7 39 41-79 356-396 (582)
88 3uie_A Adenylyl-sulfate kinase 98.7 9.6E-09 3.3E-13 62.7 2.6 27 51-77 22-50 (200)
89 2obl_A ESCN; ATPase, hydrolase 98.7 1.3E-08 4.5E-13 67.6 3.3 45 34-79 51-98 (347)
90 1jbk_A CLPB protein; beta barr 98.6 8.9E-08 3E-12 56.5 6.4 25 52-76 43-67 (195)
91 1zp6_A Hypothetical protein AT 98.6 1.5E-08 5.2E-13 60.9 3.1 22 55-76 12-33 (191)
92 2gza_A Type IV secretion syste 98.6 6.7E-09 2.3E-13 69.1 1.5 36 44-79 165-202 (361)
93 1kag_A SKI, shikimate kinase I 98.6 2.2E-08 7.5E-13 59.4 3.6 26 53-78 5-30 (173)
94 3c8u_A Fructokinase; YP_612366 98.6 1.5E-08 5E-13 62.3 2.8 24 55-78 25-48 (208)
95 2pt7_A CAG-ALFA; ATPase, prote 98.6 5.9E-09 2E-13 68.7 1.0 38 42-79 159-198 (330)
96 4eun_A Thermoresistant glucoki 98.6 2.6E-08 8.8E-13 60.8 3.7 23 55-77 32-54 (200)
97 2qm8_A GTPase/ATPase; G protei 98.6 1.2E-08 4.1E-13 67.3 2.3 37 41-77 42-80 (337)
98 2eyu_A Twitching motility prot 98.6 2.1E-08 7.2E-13 64.2 3.3 35 42-78 15-51 (261)
99 1s96_A Guanylate kinase, GMP k 98.6 2.8E-08 9.5E-13 62.2 3.7 28 51-78 13-42 (219)
100 3pfi_A Holliday junction ATP-d 98.6 7.6E-08 2.6E-12 62.5 5.7 59 12-78 23-81 (338)
101 3asz_A Uridine kinase; cytidin 98.6 2.4E-08 8.3E-13 61.0 3.1 23 55-77 9-31 (211)
102 2j41_A Guanylate kinase; GMP, 98.6 3.1E-08 1.1E-12 60.1 3.5 22 55-76 9-30 (207)
103 4a82_A Cystic fibrosis transme 98.6 2.1E-09 7E-14 75.1 -2.1 39 41-79 354-394 (578)
104 3uk6_A RUVB-like 2; hexameric 98.6 1.2E-07 4.2E-12 62.0 6.4 58 13-78 39-96 (368)
105 1sxj_A Activator 1 95 kDa subu 98.6 2.5E-08 8.6E-13 68.8 3.2 66 12-77 33-102 (516)
106 1yqt_A RNAse L inhibitor; ATP- 98.6 3E-08 1E-12 69.0 3.6 46 33-79 26-74 (538)
107 3qf4_B Uncharacterized ABC tra 98.6 7E-09 2.4E-13 72.7 0.4 45 35-79 361-408 (598)
108 1lw7_A Transcriptional regulat 98.6 3.2E-08 1.1E-12 65.5 3.5 35 45-79 159-197 (365)
109 2yl4_A ATP-binding cassette SU 98.6 4.5E-09 1.5E-13 73.6 -0.6 38 42-79 358-397 (595)
110 3qf4_A ABC transporter, ATP-bi 98.6 2.5E-09 8.7E-14 74.9 -1.9 39 41-79 356-396 (587)
111 1svm_A Large T antigen; AAA+ f 98.6 4.2E-08 1.4E-12 65.9 4.1 36 42-77 157-194 (377)
112 1sxj_E Activator 1 40 kDa subu 98.6 9.8E-08 3.4E-12 62.2 5.7 55 10-76 6-60 (354)
113 3b85_A Phosphate starvation-in 98.6 9.3E-09 3.2E-13 63.9 0.7 21 55-75 25-45 (208)
114 1lvg_A Guanylate kinase, GMP k 98.6 4.2E-08 1.4E-12 60.1 3.6 24 54-77 6-29 (198)
115 2p65_A Hypothetical protein PF 98.6 1.3E-07 4.3E-12 55.9 5.6 25 52-76 43-67 (187)
116 3kta_A Chromosome segregation 98.6 1.9E-08 6.4E-13 60.3 1.9 34 45-78 18-52 (182)
117 3a00_A Guanylate kinase, GMP k 98.6 4.5E-08 1.5E-12 59.2 3.5 23 55-77 4-26 (186)
118 1p9r_A General secretion pathw 98.6 3.7E-08 1.3E-12 66.9 3.2 37 42-79 157-194 (418)
119 2yhs_A FTSY, cell division pro 98.5 3.5E-08 1.2E-12 68.5 2.9 33 46-78 285-319 (503)
120 1ofh_A ATP-dependent HSL prote 98.5 3.2E-08 1.1E-12 63.1 2.6 27 52-78 50-76 (310)
121 2kjq_A DNAA-related protein; s 98.5 7.5E-08 2.6E-12 56.9 3.9 26 52-77 36-61 (149)
122 2npi_A Protein CLP1; CLP1-PCF1 98.5 3.1E-08 1E-12 68.0 2.5 32 46-77 130-163 (460)
123 1sq5_A Pantothenate kinase; P- 98.5 4.3E-08 1.5E-12 63.8 3.0 26 52-77 78-105 (308)
124 2bbw_A Adenylate kinase 4, AK4 98.5 7.1E-08 2.4E-12 60.5 3.8 26 53-78 28-53 (246)
125 2chg_A Replication factor C sm 98.5 3.5E-07 1.2E-11 55.1 6.7 51 13-76 12-62 (226)
126 1kgd_A CASK, peripheral plasma 98.5 6.4E-08 2.2E-12 58.3 3.4 23 55-77 8-30 (180)
127 1d2n_A N-ethylmaleimide-sensit 98.5 1.1E-07 3.9E-12 60.2 4.6 30 49-78 61-90 (272)
128 2oap_1 GSPE-2, type II secreti 98.5 5E-08 1.7E-12 67.6 3.1 40 40-79 246-287 (511)
129 3aez_A Pantothenate kinase; tr 98.5 6.7E-08 2.3E-12 63.3 3.5 28 51-78 87-116 (312)
130 3m6a_A ATP-dependent protease 98.5 2.4E-07 8.1E-12 64.5 6.4 36 43-78 98-134 (543)
131 1cke_A CK, MSSA, protein (cyti 98.5 6.7E-08 2.3E-12 59.5 3.3 25 54-78 7-31 (227)
132 1cr0_A DNA primase/helicase; R 98.5 7.8E-08 2.7E-12 61.7 3.6 37 42-78 23-61 (296)
133 3bk7_A ABC transporter ATP-bin 98.5 4.8E-08 1.6E-12 68.9 2.8 45 34-79 97-144 (607)
134 3kb2_A SPBC2 prophage-derived 98.5 1E-07 3.4E-12 56.2 3.7 24 55-78 4-27 (173)
135 2iw3_A Elongation factor 3A; a 98.5 5.4E-09 1.8E-13 77.0 -2.2 38 42-79 687-726 (986)
136 1g8p_A Magnesium-chelatase 38 98.5 1.4E-07 4.9E-12 61.1 4.7 55 10-77 16-70 (350)
137 1njg_A DNA polymerase III subu 98.5 4E-07 1.4E-11 55.2 6.5 52 14-77 19-70 (250)
138 3tau_A Guanylate kinase, GMP k 98.5 9.4E-08 3.2E-12 58.8 3.5 24 55-78 11-34 (208)
139 1sxj_C Activator 1 40 kDa subu 98.5 3.3E-07 1.1E-11 59.8 6.3 23 55-77 49-71 (340)
140 4a74_A DNA repair and recombin 98.5 9.8E-08 3.3E-12 58.5 3.4 28 51-78 22-51 (231)
141 3sop_A Neuronal-specific septi 98.5 8.9E-08 3.1E-12 61.5 3.3 26 54-79 4-29 (270)
142 1um8_A ATP-dependent CLP prote 98.5 2.8E-07 9.7E-12 60.9 5.8 27 52-78 72-98 (376)
143 1y63_A LMAJ004144AAA protein; 98.5 1.5E-07 5E-12 56.8 4.0 32 47-78 3-37 (184)
144 1knq_A Gluconate kinase; ALFA/ 98.5 1.2E-07 4.2E-12 56.3 3.6 23 55-77 11-33 (175)
145 1yqt_A RNAse L inhibitor; ATP- 98.5 5.3E-08 1.8E-12 67.8 2.1 32 48-79 306-339 (538)
146 3ozx_A RNAse L inhibitor; ATP 98.5 9.2E-08 3.1E-12 66.7 3.2 25 55-79 28-52 (538)
147 3bk7_A ABC transporter ATP-bin 98.4 5.9E-08 2E-12 68.5 2.1 33 47-79 375-409 (607)
148 2qag_B Septin-6, protein NEDD5 98.4 7.5E-08 2.6E-12 65.6 2.5 32 44-75 30-65 (427)
149 1l8q_A Chromosomal replication 98.4 8.1E-07 2.8E-11 57.5 7.3 25 52-76 37-61 (324)
150 2w58_A DNAI, primosome compone 98.4 1.5E-07 5E-12 57.1 3.6 25 53-77 55-79 (202)
151 2i3b_A HCR-ntpase, human cance 98.4 1.4E-07 4.8E-12 57.8 3.4 23 55-77 4-26 (189)
152 2iw3_A Elongation factor 3A; a 98.4 1.1E-08 3.8E-13 75.4 -1.7 40 35-74 442-483 (986)
153 3j16_B RLI1P; ribosome recycli 98.4 1.3E-07 4.5E-12 66.7 3.7 29 51-79 100-130 (608)
154 2bdt_A BH3686; alpha-beta prot 98.4 1.4E-07 4.9E-12 56.8 3.4 22 55-76 5-26 (189)
155 1hqc_A RUVB; extended AAA-ATPa 98.4 1.9E-07 6.5E-12 60.0 4.2 59 12-78 6-64 (324)
156 3hws_A ATP-dependent CLP prote 98.4 1.9E-07 6.4E-12 61.6 4.2 27 52-78 51-77 (363)
157 1qhx_A CPT, protein (chloramph 98.4 1.8E-07 6.1E-12 55.6 3.7 25 54-78 5-29 (178)
158 1sxj_D Activator 1 41 kDa subu 98.4 1.9E-07 6.7E-12 60.5 4.2 24 54-77 60-83 (353)
159 3trf_A Shikimate kinase, SK; a 98.4 2E-07 6.8E-12 55.8 4.0 26 53-78 6-31 (185)
160 3t61_A Gluconokinase; PSI-biol 98.4 1.8E-07 6.2E-12 56.9 3.7 25 54-78 20-44 (202)
161 3ozx_A RNAse L inhibitor; ATP 98.4 5.8E-08 2E-12 67.6 1.6 31 49-79 289-321 (538)
162 2ehv_A Hypothetical protein PH 98.4 1.6E-07 5.4E-12 58.3 3.4 20 55-74 33-52 (251)
163 1via_A Shikimate kinase; struc 98.4 1.9E-07 6.5E-12 55.6 3.6 25 54-78 6-30 (175)
164 3j16_B RLI1P; ribosome recycli 98.4 5.3E-08 1.8E-12 68.8 1.3 36 44-79 363-405 (608)
165 4f4c_A Multidrug resistance pr 98.4 1.6E-08 5.6E-13 76.1 -1.4 38 42-79 1093-1132(1321)
166 2w0m_A SSO2452; RECA, SSPF, un 98.4 2.1E-07 7.1E-12 56.9 3.8 26 51-76 20-47 (235)
167 4e22_A Cytidylate kinase; P-lo 98.4 1.9E-07 6.6E-12 59.0 3.6 24 55-78 30-53 (252)
168 2rhm_A Putative kinase; P-loop 98.4 2.8E-07 9.5E-12 55.2 4.2 26 53-78 6-31 (193)
169 3u61_B DNA polymerase accessor 98.4 5.9E-07 2E-11 58.0 6.0 54 12-77 20-73 (324)
170 1rj9_A FTSY, signal recognitio 98.4 1.6E-07 5.5E-12 61.3 3.2 25 55-79 105-129 (304)
171 3bos_A Putative DNA replicatio 98.4 2.2E-07 7.5E-12 57.0 3.6 26 52-77 52-77 (242)
172 2chq_A Replication factor C sm 98.4 7.8E-07 2.7E-11 56.7 6.2 54 10-76 9-62 (319)
173 2bjv_A PSP operon transcriptio 98.4 3.6E-07 1.2E-11 57.6 4.4 26 52-77 29-54 (265)
174 3ney_A 55 kDa erythrocyte memb 98.4 3.2E-07 1.1E-11 56.8 4.0 23 55-77 22-44 (197)
175 3k1j_A LON protease, ATP-depen 98.4 1.4E-07 4.9E-12 66.1 2.7 26 53-78 61-86 (604)
176 2ewv_A Twitching motility prot 98.4 2.1E-07 7.1E-12 62.2 3.4 36 43-78 127-162 (372)
177 4f4c_A Multidrug resistance pr 98.4 4.7E-08 1.6E-12 73.7 0.2 39 41-79 431-471 (1321)
178 1tf7_A KAIC; homohexamer, hexa 98.4 1.5E-07 5.1E-12 65.0 2.7 37 41-77 25-66 (525)
179 3cm0_A Adenylate kinase; ATP-b 98.4 2.9E-07 1E-11 55.0 3.6 24 55-78 7-30 (186)
180 3pvs_A Replication-associated 98.4 4.9E-07 1.7E-11 61.7 4.9 26 53-78 51-76 (447)
181 1iqp_A RFCS; clamp loader, ext 98.4 8.2E-07 2.8E-11 56.8 5.7 52 12-76 19-70 (327)
182 3fb4_A Adenylate kinase; psych 98.4 3.5E-07 1.2E-11 56.0 3.7 24 55-78 3-26 (216)
183 3e70_C DPA, signal recognition 98.3 2.5E-07 8.5E-12 61.1 3.2 25 55-79 132-156 (328)
184 1jjv_A Dephospho-COA kinase; P 98.3 3E-07 1E-11 56.0 3.4 23 55-78 5-27 (206)
185 2v1u_A Cell division control p 98.3 9.5E-07 3.2E-11 57.5 5.9 51 17-76 18-68 (387)
186 3g5u_A MCG1178, multidrug resi 98.3 5.2E-08 1.8E-12 73.3 -0.1 38 42-79 404-443 (1284)
187 1jr3_A DNA polymerase III subu 98.3 1E-06 3.4E-11 57.5 6.0 52 14-77 12-63 (373)
188 3dl0_A Adenylate kinase; phosp 98.3 3.6E-07 1.2E-11 56.0 3.7 24 55-78 3-26 (216)
189 3jvv_A Twitching mobility prot 98.3 1.9E-07 6.6E-12 62.2 2.6 27 52-78 122-149 (356)
190 3euj_A Chromosome partition pr 98.3 3.2E-07 1.1E-11 63.4 3.7 37 43-79 19-56 (483)
191 2if2_A Dephospho-COA kinase; a 98.3 3.2E-07 1.1E-11 55.7 3.3 23 55-78 4-26 (204)
192 2ze6_A Isopentenyl transferase 98.3 3.8E-07 1.3E-11 57.8 3.8 24 55-78 4-27 (253)
193 2qor_A Guanylate kinase; phosp 98.3 4.9E-07 1.7E-11 55.2 4.1 26 52-77 12-37 (204)
194 3iij_A Coilin-interacting nucl 98.3 5.6E-07 1.9E-11 53.7 4.3 26 53-78 12-37 (180)
195 2iyv_A Shikimate kinase, SK; t 98.3 4.2E-07 1.4E-11 54.4 3.7 26 54-79 4-29 (184)
196 3pxg_A Negative regulator of g 98.3 9.1E-07 3.1E-11 60.5 5.8 25 52-76 201-225 (468)
197 2jaq_A Deoxyguanosine kinase; 98.3 4.3E-07 1.5E-11 54.7 3.6 24 55-78 3-26 (205)
198 2plr_A DTMP kinase, probable t 98.3 4.9E-07 1.7E-11 54.8 3.8 24 55-78 7-30 (213)
199 3lw7_A Adenylate kinase relate 98.3 4.2E-07 1.4E-11 53.2 3.5 23 55-78 4-26 (179)
200 4aby_A DNA repair protein RECN 98.3 2.3E-08 7.8E-13 66.7 -2.3 40 38-77 45-85 (415)
201 3g5u_A MCG1178, multidrug resi 98.3 1.1E-07 3.8E-12 71.5 1.0 38 42-79 1047-1086(1284)
202 1tue_A Replication protein E1; 98.3 3.5E-07 1.2E-11 57.3 3.1 25 53-77 59-83 (212)
203 3sr0_A Adenylate kinase; phosp 98.3 4.4E-07 1.5E-11 56.3 3.6 24 55-78 3-26 (206)
204 2qgz_A Helicase loader, putati 98.3 8.2E-07 2.8E-11 57.8 4.9 26 52-77 152-177 (308)
205 1kht_A Adenylate kinase; phosp 98.3 3.5E-07 1.2E-11 54.6 2.9 23 55-77 6-28 (192)
206 2qby_A CDC6 homolog 1, cell di 98.3 1E-06 3.6E-11 57.2 5.4 53 15-76 17-69 (386)
207 3umf_A Adenylate kinase; rossm 98.3 5.4E-07 1.9E-11 56.4 3.8 27 53-79 30-56 (217)
208 1nks_A Adenylate kinase; therm 98.3 3.5E-07 1.2E-11 54.6 2.7 23 55-77 4-26 (194)
209 2r44_A Uncharacterized protein 98.3 4.6E-07 1.6E-11 58.8 3.5 27 52-78 46-72 (331)
210 1tev_A UMP-CMP kinase; ploop, 98.3 5.7E-07 2E-11 53.7 3.6 25 54-78 5-29 (196)
211 1zuh_A Shikimate kinase; alpha 98.3 6.5E-07 2.2E-11 52.9 3.8 26 54-79 9-34 (168)
212 3n70_A Transport activator; si 98.3 7.3E-07 2.5E-11 51.9 3.9 25 52-76 24-48 (145)
213 2cdn_A Adenylate kinase; phosp 98.3 6.6E-07 2.3E-11 54.3 3.8 24 55-78 23-46 (201)
214 1ly1_A Polynucleotide kinase; 98.3 5E-07 1.7E-11 53.5 3.1 21 54-74 4-24 (181)
215 1e6c_A Shikimate kinase; phosp 98.3 6.6E-07 2.3E-11 52.8 3.6 25 54-78 4-28 (173)
216 2c95_A Adenylate kinase 1; tra 98.3 6.2E-07 2.1E-11 53.8 3.4 25 54-78 11-35 (196)
217 2f1r_A Molybdopterin-guanine d 98.3 2.1E-07 7.1E-12 56.3 1.3 26 54-79 4-29 (171)
218 2bwj_A Adenylate kinase 5; pho 98.3 6.5E-07 2.2E-11 53.8 3.4 25 54-78 14-38 (199)
219 1fnn_A CDC6P, cell division co 98.3 1.6E-06 5.6E-11 56.6 5.5 54 16-78 15-70 (389)
220 3ux8_A Excinuclease ABC, A sub 98.3 1.3E-07 4.6E-12 66.9 0.3 28 42-69 32-61 (670)
221 4eaq_A DTMP kinase, thymidylat 98.2 1E-06 3.4E-11 55.2 4.2 24 55-78 29-52 (229)
222 2pt5_A Shikimate kinase, SK; a 98.2 9.3E-07 3.2E-11 52.0 3.8 24 55-78 3-26 (168)
223 4fcw_A Chaperone protein CLPB; 98.2 6.7E-07 2.3E-11 57.2 3.4 24 54-77 49-72 (311)
224 1sxj_B Activator 1 37 kDa subu 98.2 2.3E-06 7.9E-11 54.6 5.8 52 12-76 15-66 (323)
225 2qt1_A Nicotinamide riboside k 98.2 6.7E-07 2.3E-11 54.5 3.1 22 55-76 24-45 (207)
226 3te6_A Regulatory protein SIR3 98.2 8.3E-07 2.9E-11 58.4 3.8 29 49-77 42-70 (318)
227 1rz3_A Hypothetical protein rb 98.2 4.9E-07 1.7E-11 55.2 2.5 23 55-77 25-47 (201)
228 1aky_A Adenylate kinase; ATP:A 98.2 8.6E-07 2.9E-11 54.6 3.6 24 55-78 7-30 (220)
229 1qhl_A Protein (cell division 98.2 1.6E-07 5.6E-12 59.2 0.3 25 55-79 30-54 (227)
230 1zak_A Adenylate kinase; ATP:A 98.2 7.7E-07 2.6E-11 54.8 3.4 25 54-78 7-31 (222)
231 2yvu_A Probable adenylyl-sulfa 98.2 7.8E-07 2.7E-11 53.4 3.3 23 55-77 16-38 (186)
232 1zd8_A GTP:AMP phosphotransfer 98.2 8.1E-07 2.8E-11 55.0 3.4 25 54-78 9-33 (227)
233 2vli_A Antibiotic resistance p 98.2 5.5E-07 1.9E-11 53.6 2.5 24 55-78 8-31 (183)
234 2z4s_A Chromosomal replication 98.2 7.7E-07 2.6E-11 60.4 3.5 25 52-76 130-154 (440)
235 3pxi_A Negative regulator of g 98.2 2E-06 6.9E-11 61.5 5.8 26 51-76 200-225 (758)
236 1qf9_A UMP/CMP kinase, protein 98.2 9E-07 3.1E-11 52.8 3.4 26 53-78 7-32 (194)
237 1vma_A Cell division protein F 98.2 9.7E-07 3.3E-11 57.7 3.7 24 55-78 107-130 (306)
238 1tq4_A IIGP1, interferon-induc 98.2 6.7E-07 2.3E-11 60.7 3.0 24 55-78 72-95 (413)
239 3tqc_A Pantothenate kinase; bi 98.2 9.1E-07 3.1E-11 58.3 3.5 23 55-77 95-117 (321)
240 3tlx_A Adenylate kinase 2; str 98.2 1.1E-06 3.6E-11 55.4 3.6 26 53-78 30-55 (243)
241 1ukz_A Uridylate kinase; trans 98.2 1.1E-06 3.7E-11 53.3 3.5 24 55-78 18-41 (203)
242 1e4v_A Adenylate kinase; trans 98.2 1.1E-06 3.7E-11 53.9 3.5 24 55-78 3-26 (214)
243 3r20_A Cytidylate kinase; stru 98.2 1.2E-06 4E-11 55.5 3.6 25 54-78 11-35 (233)
244 3cr8_A Sulfate adenylyltranfer 98.2 8.9E-07 3E-11 62.0 3.3 28 51-78 366-395 (552)
245 3ake_A Cytidylate kinase; CMP 98.2 1.3E-06 4.5E-11 52.8 3.7 26 54-79 4-29 (208)
246 3cmw_A Protein RECA, recombina 98.2 2.8E-07 9.7E-12 71.0 0.9 68 11-78 1013-1108(1706)
247 2p5t_B PEZT; postsegregational 98.2 9.6E-07 3.3E-11 55.7 3.2 24 54-77 34-57 (253)
248 2qby_B CDC6 homolog 3, cell di 98.2 2.2E-06 7.6E-11 56.0 5.0 50 18-76 20-69 (384)
249 2z0h_A DTMP kinase, thymidylat 98.2 1.3E-06 4.4E-11 52.4 3.6 22 55-76 3-24 (197)
250 2pez_A Bifunctional 3'-phospho 98.2 1.5E-06 5.2E-11 51.8 3.8 22 55-76 8-29 (179)
251 3co5_A Putative two-component 98.2 3E-07 1E-11 53.6 0.7 25 52-76 27-51 (143)
252 1pzn_A RAD51, DNA repair and r 98.2 1.6E-06 5.6E-11 57.4 4.2 29 48-76 125-155 (349)
253 2pbr_A DTMP kinase, thymidylat 98.2 1.6E-06 5.4E-11 51.8 3.7 22 55-76 3-24 (195)
254 3be4_A Adenylate kinase; malar 98.2 1.3E-06 4.5E-11 53.8 3.4 24 55-78 8-31 (217)
255 2wwf_A Thymidilate kinase, put 98.2 8.3E-07 2.9E-11 53.9 2.5 23 55-77 13-35 (212)
256 2xb4_A Adenylate kinase; ATP-b 98.2 1.5E-06 5.1E-11 53.9 3.6 24 55-78 3-26 (223)
257 1ex7_A Guanylate kinase; subst 98.2 1.5E-06 5.1E-11 53.3 3.5 24 53-76 2-25 (186)
258 2qnr_A Septin-2, protein NEDD5 98.2 4.5E-07 1.5E-11 58.9 1.2 36 36-75 6-41 (301)
259 1ak2_A Adenylate kinase isoenz 98.2 1.6E-06 5.3E-11 54.0 3.6 24 55-78 19-42 (233)
260 1u0l_A Probable GTPase ENGC; p 98.2 8.6E-07 3E-11 57.5 2.5 25 55-79 172-196 (301)
261 3ux8_A Excinuclease ABC, A sub 98.2 1.7E-07 5.9E-12 66.4 -0.9 31 43-73 337-369 (670)
262 1f2t_A RAD50 ABC-ATPase; DNA d 98.2 6.5E-07 2.2E-11 52.8 1.7 26 50-75 20-46 (149)
263 3qf7_A RAD50; ABC-ATPase, ATPa 98.2 5.9E-07 2E-11 59.7 1.7 30 46-75 16-46 (365)
264 1n0w_A DNA repair protein RAD5 98.1 1.5E-06 5.3E-11 53.6 3.4 21 55-75 27-47 (243)
265 1u0j_A DNA replication protein 98.1 1.3E-06 4.3E-11 56.5 3.0 24 53-76 105-128 (267)
266 2cvh_A DNA repair and recombin 98.1 2E-06 6.7E-11 52.4 3.8 24 51-74 17-42 (220)
267 1q3t_A Cytidylate kinase; nucl 98.1 1.9E-06 6.6E-11 53.7 3.8 24 55-78 19-42 (236)
268 1gvn_B Zeta; postsegregational 98.1 1.3E-06 4.5E-11 56.4 3.1 23 54-76 35-57 (287)
269 2ga8_A Hypothetical 39.9 kDa p 98.1 1.6E-06 5.5E-11 58.0 3.5 23 55-77 27-49 (359)
270 1r6b_X CLPA protein; AAA+, N-t 98.1 5E-06 1.7E-10 59.4 6.2 26 51-76 206-231 (758)
271 2vp4_A Deoxynucleoside kinase; 98.1 1E-06 3.5E-11 54.9 2.3 26 50-75 16-43 (230)
272 1nn5_A Similar to deoxythymidy 98.1 1.1E-06 3.8E-11 53.4 2.5 23 55-77 12-34 (215)
273 1pui_A ENGB, probable GTP-bind 98.1 5.4E-07 1.9E-11 54.5 0.9 28 49-76 21-50 (210)
274 1oix_A RAS-related protein RAB 98.1 1.7E-06 5.7E-11 52.1 3.0 23 55-77 32-54 (191)
275 1m7g_A Adenylylsulfate kinase; 98.1 1.8E-06 6.2E-11 52.9 3.2 23 55-77 28-50 (211)
276 2o5v_A DNA replication and rep 98.1 5.2E-07 1.8E-11 60.2 0.7 31 44-74 17-48 (359)
277 2v54_A DTMP kinase, thymidylat 98.1 1.9E-06 6.6E-11 52.0 3.1 22 55-76 7-28 (204)
278 2f9l_A RAB11B, member RAS onco 98.1 2E-06 6.8E-11 51.9 3.2 22 55-76 8-29 (199)
279 1uj2_A Uridine-cytidine kinase 98.1 2E-06 6.8E-11 54.2 3.2 25 54-78 24-48 (252)
280 3szr_A Interferon-induced GTP- 98.1 1.3E-06 4.4E-11 61.6 2.5 24 55-78 48-71 (608)
281 1qvr_A CLPB protein; coiled co 98.1 5.4E-06 1.8E-10 60.1 5.7 26 51-76 190-215 (854)
282 1gtv_A TMK, thymidylate kinase 98.1 9.3E-07 3.2E-11 53.8 1.5 23 55-77 3-25 (214)
283 1nlf_A Regulatory protein REPA 98.1 2.1E-06 7.1E-11 54.7 3.2 22 55-76 33-54 (279)
284 1uf9_A TT1252 protein; P-loop, 98.1 2.5E-06 8.6E-11 51.4 3.3 21 55-75 11-31 (203)
285 2rcn_A Probable GTPase ENGC; Y 98.1 1.9E-06 6.4E-11 57.6 2.9 23 55-77 218-240 (358)
286 1vht_A Dephospho-COA kinase; s 98.1 3.1E-06 1.1E-10 51.9 3.5 24 54-78 6-29 (218)
287 2yv5_A YJEQ protein; hydrolase 98.1 2.5E-06 8.6E-11 55.4 3.1 23 55-78 168-190 (302)
288 1odf_A YGR205W, hypothetical 3 98.0 3E-06 1E-10 55.0 3.4 23 55-77 34-56 (290)
289 2p67_A LAO/AO transport system 98.0 4.9E-06 1.7E-10 54.7 4.4 35 42-76 44-80 (341)
290 2grj_A Dephospho-COA kinase; T 98.0 3E-06 1E-10 52.0 3.2 24 55-78 15-38 (192)
291 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 2.8E-06 9.7E-11 58.8 3.4 26 52-77 41-66 (500)
292 1zu4_A FTSY; GTPase, signal re 98.0 2.4E-06 8.4E-11 56.1 2.9 32 46-77 97-130 (320)
293 1f6b_A SAR1; gtpases, N-termin 98.0 2.7E-06 9.1E-11 51.5 2.9 33 42-74 14-47 (198)
294 1tf7_A KAIC; homohexamer, hexa 98.0 2.5E-06 8.6E-11 58.9 2.9 31 48-78 275-307 (525)
295 1wb9_A DNA mismatch repair pro 98.0 2E-06 6.7E-11 62.5 2.4 32 43-75 597-630 (800)
296 3thx_B DNA mismatch repair pro 98.0 1.7E-06 5.7E-11 63.7 2.0 32 43-74 662-695 (918)
297 1t9h_A YLOQ, probable GTPase E 98.0 6E-07 2E-11 58.9 -0.4 24 55-78 176-199 (307)
298 2qag_C Septin-7; cell cycle, c 98.0 8.2E-07 2.8E-11 60.3 0.2 23 55-77 34-56 (418)
299 2dr3_A UPF0273 protein PH0284; 98.0 4.1E-06 1.4E-10 51.7 3.4 21 55-75 26-46 (247)
300 3a4m_A L-seryl-tRNA(SEC) kinas 98.0 4.9E-06 1.7E-10 52.7 3.8 21 55-75 7-27 (260)
301 3qks_A DNA double-strand break 98.0 2.1E-06 7.2E-11 52.8 1.7 26 51-76 21-47 (203)
302 1m2o_B GTP-binding protein SAR 98.0 4.2E-06 1.4E-10 50.3 3.0 31 44-74 14-45 (190)
303 2px0_A Flagellar biosynthesis 98.0 1.7E-05 5.7E-10 51.5 6.0 23 55-77 108-130 (296)
304 1w1w_A Structural maintenance 98.0 5.7E-06 2E-10 55.8 3.9 24 55-78 29-52 (430)
305 1np6_A Molybdopterin-guanine d 98.0 7.6E-06 2.6E-10 49.5 3.8 24 53-76 7-30 (174)
306 1ewq_A DNA mismatch repair pro 97.9 3.5E-06 1.2E-10 60.9 2.4 32 44-76 569-600 (765)
307 3crm_A TRNA delta(2)-isopenten 97.9 6.3E-06 2.2E-10 54.4 3.4 25 53-77 6-30 (323)
308 3gmt_A Adenylate kinase; ssgci 97.9 8.5E-06 2.9E-10 51.5 3.8 26 54-79 10-35 (230)
309 3qkt_A DNA double-strand break 97.9 2.6E-06 8.7E-11 56.0 1.4 26 49-74 19-45 (339)
310 1ls1_A Signal recognition part 97.9 7.6E-06 2.6E-10 53.0 3.6 32 46-77 92-123 (295)
311 2wji_A Ferrous iron transport 97.9 5.6E-06 1.9E-10 48.5 2.8 21 55-75 6-26 (165)
312 1ltq_A Polynucleotide kinase; 97.9 6.9E-06 2.4E-10 52.5 3.3 23 54-76 4-26 (301)
313 2h92_A Cytidylate kinase; ross 97.9 8.7E-06 3E-10 49.8 3.6 25 54-78 5-29 (219)
314 3thx_A DNA mismatch repair pro 97.9 3.7E-06 1.3E-10 61.9 2.2 30 44-73 652-683 (934)
315 1e69_A Chromosome segregation 97.9 3.3E-06 1.1E-10 55.0 1.5 29 48-76 19-48 (322)
316 3zvl_A Bifunctional polynucleo 97.9 6.9E-06 2.4E-10 55.4 3.1 24 55-78 261-284 (416)
317 1ojl_A Transcriptional regulat 97.9 1.3E-05 4.3E-10 52.0 4.0 25 52-76 25-49 (304)
318 1nij_A Hypothetical protein YJ 97.9 6E-06 2.1E-10 53.9 2.4 22 55-76 7-28 (318)
319 2zej_A Dardarin, leucine-rich 97.9 6.1E-06 2.1E-10 49.2 2.3 21 55-75 5-25 (184)
320 2wjg_A FEOB, ferrous iron tran 97.9 9E-06 3.1E-10 48.1 2.9 21 55-75 10-30 (188)
321 2f6r_A COA synthase, bifunctio 97.9 1.1E-05 3.6E-10 51.9 3.3 23 55-78 78-100 (281)
322 2o8b_B DNA mismatch repair pro 97.8 3.2E-06 1.1E-10 62.7 0.9 32 43-75 771-811 (1022)
323 3d3q_A TRNA delta(2)-isopenten 97.8 1.2E-05 4.1E-10 53.4 3.5 25 53-77 8-32 (340)
324 2www_A Methylmalonic aciduria 97.8 1.2E-05 4.1E-10 53.2 3.4 22 55-76 77-98 (349)
325 3hr8_A Protein RECA; alpha and 97.8 7.6E-06 2.6E-10 54.6 2.4 23 55-77 64-86 (356)
326 2gj8_A MNME, tRNA modification 97.8 1E-05 3.6E-10 47.8 2.8 22 55-76 7-28 (172)
327 1ega_A Protein (GTP-binding pr 97.8 1.3E-05 4.6E-10 51.9 3.3 21 55-75 11-31 (301)
328 1udx_A The GTP-binding protein 97.8 3E-06 1E-10 57.5 0.0 30 46-75 149-180 (416)
329 1xjc_A MOBB protein homolog; s 97.8 1.7E-05 5.8E-10 48.0 3.4 23 54-76 6-28 (169)
330 2ffh_A Protein (FFH); SRP54, s 97.8 2.2E-05 7.6E-10 53.5 4.3 33 46-78 92-124 (425)
331 1a7j_A Phosphoribulokinase; tr 97.8 5.1E-06 1.7E-10 53.8 0.9 23 55-77 8-30 (290)
332 1a5t_A Delta prime, HOLB; zinc 97.8 2.5E-05 8.4E-10 51.1 4.0 26 52-77 24-49 (334)
333 1j8m_F SRP54, signal recogniti 97.8 1.6E-05 5.4E-10 51.7 2.9 31 47-77 92-123 (297)
334 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 2.1E-05 7.2E-10 53.1 3.5 20 55-74 23-42 (392)
335 3ice_A Transcription terminati 97.7 2.3E-05 7.7E-10 53.4 3.6 31 46-76 166-198 (422)
336 3a8t_A Adenylate isopentenyltr 97.7 1.7E-05 5.9E-10 52.7 2.9 24 54-77 42-65 (339)
337 1z2a_A RAS-related protein RAB 97.7 2.3E-05 8E-10 45.2 3.2 21 55-75 8-28 (168)
338 2vhj_A Ntpase P4, P4; non- hyd 97.7 1.4E-05 4.9E-10 53.0 2.4 21 55-75 126-146 (331)
339 2ged_A SR-beta, signal recogni 97.7 2.4E-05 8.1E-10 46.5 3.2 23 54-76 50-72 (193)
340 3k53_A Ferrous iron transport 97.7 1.8E-05 6.3E-10 50.2 2.8 23 54-76 5-27 (271)
341 3lda_A DNA repair protein RAD5 97.7 1.8E-05 6.2E-10 53.4 2.9 19 55-73 181-199 (400)
342 2qmh_A HPR kinase/phosphorylas 97.7 2E-05 6.9E-10 49.1 2.9 25 52-76 34-58 (205)
343 3pxi_A Negative regulator of g 97.7 2.2E-05 7.4E-10 56.2 3.4 23 54-76 523-545 (758)
344 3lxx_A GTPase IMAP family memb 97.7 2.1E-05 7.2E-10 48.8 3.0 22 55-76 32-53 (239)
345 3f9v_A Minichromosome maintena 97.7 1.6E-05 5.5E-10 56.0 2.7 24 54-77 329-352 (595)
346 1kao_A RAP2A; GTP-binding prot 97.7 2.7E-05 9.1E-10 44.8 3.2 21 55-75 6-26 (167)
347 2dyk_A GTP-binding protein; GT 97.7 2.7E-05 9.1E-10 44.7 3.2 21 55-75 4-24 (161)
348 3auy_A DNA double-strand break 97.7 8.8E-06 3E-10 54.0 1.2 29 46-74 18-47 (371)
349 3exa_A TRNA delta(2)-isopenten 97.7 2.5E-05 8.4E-10 51.7 3.3 24 54-77 5-28 (322)
350 2vf7_A UVRA2, excinuclease ABC 97.7 1.7E-06 6E-11 63.1 -2.4 33 43-75 512-547 (842)
351 3fdi_A Uncharacterized protein 97.7 3.1E-05 1.1E-09 47.5 3.6 26 54-79 8-33 (201)
352 3foz_A TRNA delta(2)-isopenten 97.7 2.7E-05 9.1E-10 51.4 3.4 25 53-77 11-35 (316)
353 2zr9_A Protein RECA, recombina 97.7 2.4E-05 8.1E-10 51.9 3.2 22 55-76 64-85 (349)
354 2nzj_A GTP-binding protein REM 97.7 2.4E-05 8.1E-10 45.6 2.8 21 55-75 7-27 (175)
355 1r6b_X CLPA protein; AAA+, N-t 97.7 2.6E-05 8.8E-10 55.7 3.4 24 54-77 490-513 (758)
356 2ce2_X GTPase HRAS; signaling 97.7 2.7E-05 9.3E-10 44.6 3.0 21 55-75 6-26 (166)
357 2ygr_A Uvrabc system protein A 97.7 3.9E-06 1.3E-10 62.1 -0.9 31 43-73 657-689 (993)
358 1u8z_A RAS-related protein RAL 97.7 3.2E-05 1.1E-09 44.4 3.2 21 55-75 7-27 (168)
359 1z0j_A RAB-22, RAS-related pro 97.7 3.3E-05 1.1E-09 44.6 3.2 22 55-76 9-30 (170)
360 2erx_A GTP-binding protein DI- 97.7 3E-05 1E-09 44.8 3.0 21 55-75 6-26 (172)
361 1ek0_A Protein (GTP-binding pr 97.7 3.3E-05 1.1E-09 44.5 3.2 21 55-75 6-26 (170)
362 1z08_A RAS-related protein RAB 97.7 3.4E-05 1.2E-09 44.7 3.2 21 55-75 9-29 (170)
363 1wms_A RAB-9, RAB9, RAS-relate 97.7 3.4E-05 1.2E-09 45.0 3.2 21 55-75 10-30 (177)
364 1g16_A RAS-related protein SEC 97.7 3.2E-05 1.1E-09 44.7 3.0 21 55-75 6-26 (170)
365 4edh_A DTMP kinase, thymidylat 97.7 3.4E-05 1.2E-09 47.9 3.2 23 55-77 9-31 (213)
366 1ky3_A GTP-binding protein YPT 97.6 3.6E-05 1.2E-09 44.9 3.2 21 55-75 11-31 (182)
367 1w5s_A Origin recognition comp 97.6 2.7E-05 9.3E-10 51.2 2.9 24 53-76 51-76 (412)
368 3t1o_A Gliding protein MGLA; G 97.6 3.3E-05 1.1E-09 45.7 3.0 22 55-76 17-38 (198)
369 3q85_A GTP-binding protein REM 97.6 3E-05 1E-09 44.9 2.8 20 55-74 5-24 (169)
370 1c1y_A RAS-related protein RAP 97.6 3.8E-05 1.3E-09 44.3 3.2 21 55-75 6-26 (167)
371 1nrj_B SR-beta, signal recogni 97.6 3.5E-05 1.2E-09 46.7 3.2 22 55-76 15-36 (218)
372 2r6a_A DNAB helicase, replicat 97.6 5.3E-05 1.8E-09 51.5 4.2 34 43-76 192-227 (454)
373 2hxs_A RAB-26, RAS-related pro 97.6 3.9E-05 1.4E-09 44.8 3.2 21 55-75 9-29 (178)
374 1r2q_A RAS-related protein RAB 97.6 3.9E-05 1.4E-09 44.2 3.2 21 55-75 9-29 (170)
375 3bc1_A RAS-related protein RAB 97.6 4E-05 1.4E-09 45.1 3.2 21 55-75 14-34 (195)
376 3clv_A RAB5 protein, putative; 97.6 4.1E-05 1.4E-09 45.3 3.2 21 55-75 10-30 (208)
377 2r6f_A Excinuclease ABC subuni 97.6 3.8E-06 1.3E-10 62.1 -1.6 31 43-73 639-671 (972)
378 2fna_A Conserved hypothetical 97.6 3.8E-05 1.3E-09 49.3 3.3 25 53-77 31-55 (357)
379 4dsu_A GTPase KRAS, isoform 2B 97.6 4.2E-05 1.4E-09 45.0 3.2 22 55-76 7-28 (189)
380 2ocp_A DGK, deoxyguanosine kin 97.6 4E-05 1.4E-09 47.7 3.2 22 55-76 5-26 (241)
381 4ad8_A DNA repair protein RECN 97.6 3.7E-06 1.3E-10 58.0 -1.6 38 39-76 46-84 (517)
382 1r8s_A ADP-ribosylation factor 97.6 4.6E-05 1.6E-09 43.9 3.3 21 55-75 3-23 (164)
383 3v9p_A DTMP kinase, thymidylat 97.6 3.4E-05 1.2E-09 48.5 2.9 23 55-77 28-50 (227)
384 1mky_A Probable GTP-binding pr 97.6 2.9E-05 9.8E-10 52.5 2.7 22 55-76 183-204 (439)
385 2fn4_A P23, RAS-related protei 97.6 4E-05 1.4E-09 44.7 3.0 21 55-75 12-32 (181)
386 2qen_A Walker-type ATPase; unk 97.6 4.5E-05 1.5E-09 48.9 3.5 24 53-76 32-55 (350)
387 3q72_A GTP-binding protein RAD 97.6 2.2E-05 7.5E-10 45.4 1.8 20 55-74 5-24 (166)
388 2lkc_A Translation initiation 97.6 4.2E-05 1.4E-09 44.7 3.0 21 55-75 11-31 (178)
389 3tmk_A Thymidylate kinase; pho 97.6 5.8E-05 2E-09 47.1 3.7 24 55-78 8-31 (216)
390 2oil_A CATX-8, RAS-related pro 97.6 4.6E-05 1.6E-09 45.3 3.2 21 55-75 28-48 (193)
391 1upt_A ARL1, ADP-ribosylation 97.6 4.8E-05 1.6E-09 44.1 3.2 21 55-75 10-30 (171)
392 1z0f_A RAB14, member RAS oncog 97.6 4.9E-05 1.7E-09 44.2 3.2 22 55-76 18-39 (179)
393 2axn_A 6-phosphofructo-2-kinas 97.6 3.3E-05 1.1E-09 53.6 2.7 23 55-77 38-60 (520)
394 3iev_A GTP-binding protein ERA 97.6 3.3E-05 1.1E-09 50.1 2.6 25 51-75 8-33 (308)
395 1svi_A GTP-binding protein YSX 97.6 3.6E-05 1.2E-09 45.7 2.5 21 55-75 26-46 (195)
396 2y8e_A RAB-protein 6, GH09086P 97.6 4.7E-05 1.6E-09 44.3 3.0 21 55-75 17-37 (179)
397 1qvr_A CLPB protein; coiled co 97.6 3.9E-05 1.3E-09 55.7 3.1 23 54-76 590-612 (854)
398 3b1v_A Ferrous iron uptake tra 97.6 3.9E-05 1.3E-09 49.2 2.8 21 55-75 6-26 (272)
399 3con_A GTPase NRAS; structural 97.6 5.2E-05 1.8E-09 44.9 3.2 21 55-75 24-44 (190)
400 2efe_B Small GTP-binding prote 97.6 5.5E-05 1.9E-09 44.3 3.2 21 55-75 15-35 (181)
401 3tqf_A HPR(Ser) kinase; transf 97.6 4.7E-05 1.6E-09 46.6 3.0 23 52-74 16-38 (181)
402 2a9k_A RAS-related protein RAL 97.6 5.3E-05 1.8E-09 44.4 3.2 21 55-75 21-41 (187)
403 3tw8_B RAS-related protein RAB 97.6 3.1E-05 1E-09 45.2 2.1 21 55-75 12-32 (181)
404 1v5w_A DMC1, meiotic recombina 97.6 0.00014 4.8E-09 47.9 5.4 26 51-76 119-146 (343)
405 2wsm_A Hydrogenase expression/ 97.6 5.5E-05 1.9E-09 46.0 3.2 24 53-76 31-54 (221)
406 2g6b_A RAS-related protein RAB 97.6 5.8E-05 2E-09 44.1 3.2 21 55-75 13-33 (180)
407 3pqc_A Probable GTP-binding pr 97.6 4.2E-05 1.4E-09 45.2 2.5 21 55-75 26-46 (195)
408 3t34_A Dynamin-related protein 97.6 4E-05 1.4E-09 50.5 2.7 31 44-75 27-57 (360)
409 2cxx_A Probable GTP-binding pr 97.6 3.9E-05 1.3E-09 45.2 2.4 21 55-75 4-24 (190)
410 3eph_A TRNA isopentenyltransfe 97.6 6.1E-05 2.1E-09 51.2 3.6 24 54-77 4-27 (409)
411 1m7b_A RND3/RHOE small GTP-bin 97.5 5.3E-05 1.8E-09 44.9 3.0 21 55-75 10-30 (184)
412 2bme_A RAB4A, RAS-related prot 97.5 5.4E-05 1.9E-09 44.5 3.0 21 55-75 13-33 (186)
413 1p5z_B DCK, deoxycytidine kina 97.5 2.2E-05 7.4E-10 49.6 1.3 22 55-76 27-48 (263)
414 3lv8_A DTMP kinase, thymidylat 97.5 4.1E-05 1.4E-09 48.4 2.5 23 55-77 30-52 (236)
415 3ihw_A Centg3; RAS, centaurin, 97.5 6.4E-05 2.2E-09 44.8 3.2 21 55-75 23-43 (184)
416 2bov_A RAla, RAS-related prote 97.5 6.2E-05 2.1E-09 45.0 3.2 21 55-75 17-37 (206)
417 1vg8_A RAS-related protein RAB 97.5 6.4E-05 2.2E-09 45.0 3.2 22 55-76 11-32 (207)
418 3tkl_A RAS-related protein RAB 97.5 6.3E-05 2.2E-09 44.6 3.2 21 55-75 19-39 (196)
419 2gf9_A RAS-related protein RAB 97.5 6.6E-05 2.3E-09 44.6 3.2 21 55-75 25-45 (189)
420 1mh1_A RAC1; GTP-binding, GTPa 97.5 6.7E-05 2.3E-09 44.0 3.2 21 55-75 8-28 (186)
421 3kkq_A RAS-related protein M-R 97.5 6.7E-05 2.3E-09 44.1 3.2 21 55-75 21-41 (183)
422 2z43_A DNA repair and recombin 97.5 7.6E-05 2.6E-09 48.7 3.6 22 55-76 110-131 (324)
423 3dz8_A RAS-related protein RAB 97.5 6.8E-05 2.3E-09 44.7 3.1 22 55-76 26-47 (191)
424 1g8f_A Sulfate adenylyltransfe 97.5 5.8E-05 2E-09 52.5 3.1 24 55-78 398-421 (511)
425 1fzq_A ADP-ribosylation factor 97.5 3.6E-05 1.2E-09 45.7 1.8 21 55-75 19-39 (181)
426 2cjw_A GTP-binding protein GEM 97.5 7.7E-05 2.6E-09 44.8 3.3 21 55-75 9-29 (192)
427 2gf0_A GTP-binding protein DI- 97.5 7E-05 2.4E-09 44.5 3.0 21 55-75 11-31 (199)
428 3kl4_A SRP54, signal recogniti 97.5 4.4E-05 1.5E-09 52.1 2.4 23 55-77 100-122 (433)
429 1z06_A RAS-related protein RAB 97.5 7.8E-05 2.7E-09 44.2 3.2 21 55-75 23-43 (189)
430 2fg5_A RAB-22B, RAS-related pr 97.5 7.1E-05 2.4E-09 44.7 3.0 21 55-75 26-46 (192)
431 1bif_A 6-phosphofructo-2-kinas 97.5 5.9E-05 2E-09 51.4 2.9 24 54-77 41-64 (469)
432 3oes_A GTPase rhebl1; small GT 97.5 7.1E-05 2.4E-09 45.0 3.0 21 55-75 27-47 (201)
433 1x3s_A RAS-related protein RAB 97.5 8E-05 2.7E-09 44.0 3.2 21 55-75 18-38 (195)
434 2iwr_A Centaurin gamma 1; ANK 97.5 6E-05 2.1E-09 44.1 2.6 21 55-75 10-30 (178)
435 3lxw_A GTPase IMAP family memb 97.5 6.8E-05 2.3E-09 47.1 2.9 21 55-75 24-44 (247)
436 3t5g_A GTP-binding protein RHE 97.5 7.5E-05 2.6E-09 43.8 3.0 21 55-75 9-29 (181)
437 2atv_A RERG, RAS-like estrogen 97.5 8.3E-05 2.8E-09 44.4 3.2 21 55-75 31-51 (196)
438 3bwd_D RAC-like GTP-binding pr 97.5 8.3E-05 2.8E-09 43.5 3.2 21 55-75 11-31 (182)
439 3iby_A Ferrous iron transport 97.5 6.2E-05 2.1E-09 47.7 2.8 22 54-75 3-24 (256)
440 1zbd_A Rabphilin-3A; G protein 97.5 7.2E-05 2.5E-09 44.8 2.9 21 55-75 11-31 (203)
441 1zd9_A ADP-ribosylation factor 97.5 8.2E-05 2.8E-09 44.2 3.2 21 55-75 25-45 (188)
442 2a5j_A RAS-related protein RAB 97.5 8.4E-05 2.9E-09 44.2 3.2 21 55-75 24-44 (191)
443 3reg_A RHO-like small GTPase; 97.5 8.4E-05 2.9E-09 44.3 3.2 21 55-75 26-46 (194)
444 3a1s_A Iron(II) transport prot 97.5 7.2E-05 2.5E-09 47.4 3.0 21 55-75 8-28 (258)
445 2bcg_Y Protein YP2, GTP-bindin 97.5 7.6E-05 2.6E-09 44.8 3.0 21 55-75 11-31 (206)
446 2hf9_A Probable hydrogenase ni 97.5 8.4E-05 2.9E-09 45.3 3.1 23 54-76 40-62 (226)
447 3cph_A RAS-related protein SEC 97.5 8.6E-05 2.9E-09 44.6 3.2 22 54-75 22-43 (213)
448 3pih_A Uvrabc system protein A 97.5 2.7E-05 9.1E-10 57.4 1.0 27 43-69 599-627 (916)
449 3ld9_A DTMP kinase, thymidylat 97.5 0.00011 3.6E-09 46.2 3.6 23 55-77 24-46 (223)
450 3c5c_A RAS-like protein 12; GD 97.5 9.2E-05 3.1E-09 44.1 3.2 21 55-75 24-44 (187)
451 1u94_A RECA protein, recombina 97.5 8.9E-05 3E-09 49.3 3.4 22 55-76 66-87 (356)
452 2p5s_A RAS and EF-hand domain 97.5 9.2E-05 3.2E-09 44.4 3.2 21 55-75 31-51 (199)
453 2zts_A Putative uncharacterize 97.4 8.8E-05 3E-09 45.6 3.1 20 55-74 33-52 (251)
454 1jwy_B Dynamin A GTPase domain 97.4 9.7E-05 3.3E-09 47.3 3.4 22 55-76 27-48 (315)
455 2orw_A Thymidine kinase; TMTK, 97.4 9.4E-05 3.2E-09 44.8 3.1 21 55-75 6-26 (184)
456 1ksh_A ARF-like protein 2; sma 97.4 6.8E-05 2.3E-09 44.3 2.4 21 55-75 21-41 (186)
457 2ew1_A RAS-related protein RAB 97.4 8.9E-05 3.1E-09 45.0 3.0 21 55-75 29-49 (201)
458 1gwn_A RHO-related GTP-binding 97.4 9.2E-05 3.1E-09 45.0 3.0 21 55-75 31-51 (205)
459 4tmk_A Protein (thymidylate ki 97.4 7.4E-05 2.5E-09 46.5 2.5 23 55-77 6-28 (213)
460 2fh5_B SR-beta, signal recogni 97.4 0.00011 3.6E-09 44.5 3.2 21 55-75 10-30 (214)
461 2qtf_A Protein HFLX, GTP-bindi 97.4 7.3E-05 2.5E-09 49.8 2.5 22 55-76 182-203 (364)
462 4ag6_A VIRB4 ATPase, type IV s 97.4 0.00012 4E-09 48.6 3.6 24 53-76 36-59 (392)
463 3hdt_A Putative kinase; struct 97.4 0.0001 3.5E-09 46.1 3.1 25 55-79 17-41 (223)
464 1zj6_A ADP-ribosylation factor 97.4 9.2E-05 3.2E-09 43.8 2.8 20 55-74 19-38 (187)
465 2o52_A RAS-related protein RAB 97.4 8.3E-05 2.8E-09 44.8 2.6 21 55-75 28-48 (200)
466 1x6v_B Bifunctional 3'-phospho 97.4 0.00012 4.2E-09 52.1 3.7 22 55-76 55-76 (630)
467 2fv8_A H6, RHO-related GTP-bin 97.4 0.00011 3.7E-09 44.4 3.0 21 55-75 28-48 (207)
468 3p32_A Probable GTPase RV1496/ 97.4 0.00012 4E-09 48.4 3.4 22 55-76 82-103 (355)
469 2xtp_A GTPase IMAP family memb 97.4 9.5E-05 3.3E-09 46.3 2.8 22 55-76 25-46 (260)
470 3llu_A RAS-related GTP-binding 97.4 7.2E-05 2.4E-09 44.8 2.2 22 55-76 23-44 (196)
471 4b3f_X DNA-binding protein smu 97.4 0.00066 2.3E-08 47.9 7.3 19 55-73 208-226 (646)
472 2f7s_A C25KG, RAS-related prot 97.4 0.0001 3.5E-09 44.6 2.8 21 55-75 28-48 (217)
473 3i8s_A Ferrous iron transport 97.4 9.6E-05 3.3E-09 47.1 2.8 22 54-75 5-26 (274)
474 1moz_A ARL1, ADP-ribosylation 97.4 5.9E-05 2E-09 44.3 1.7 20 55-74 21-40 (183)
475 2aka_B Dynamin-1; fusion prote 97.4 0.00014 4.9E-09 46.1 3.6 22 55-76 29-50 (299)
476 3bh0_A DNAB-like replicative h 97.4 0.00017 5.8E-09 46.9 4.0 33 44-76 58-92 (315)
477 3cbq_A GTP-binding protein REM 97.4 5.3E-05 1.8E-09 45.6 1.5 20 55-74 26-45 (195)
478 2h17_A ADP-ribosylation factor 97.4 8.4E-05 2.9E-09 43.9 2.3 21 55-75 24-44 (181)
479 4bas_A ADP-ribosylation factor 97.4 7.7E-05 2.6E-09 44.3 2.1 21 55-75 20-40 (199)
480 2q3h_A RAS homolog gene family 97.4 0.00011 3.7E-09 43.9 2.8 21 55-75 23-43 (201)
481 2qu8_A Putative nucleolar GTP- 97.4 9E-05 3.1E-09 45.5 2.4 21 55-75 32-52 (228)
482 2atx_A Small GTP binding prote 97.4 0.00013 4.4E-09 43.4 3.0 21 55-75 21-41 (194)
483 2fu5_C RAS-related protein RAB 97.4 5.9E-05 2E-09 44.3 1.5 21 55-75 11-31 (183)
484 2v3c_C SRP54, signal recogniti 97.4 0.0001 3.4E-09 50.2 2.8 23 54-76 101-123 (432)
485 2i1q_A DNA repair and recombin 97.4 0.0001 3.5E-09 47.8 2.7 21 55-75 101-121 (322)
486 1m8p_A Sulfate adenylyltransfe 97.4 0.0001 3.4E-09 51.8 2.9 23 55-77 399-421 (573)
487 2gco_A H9, RHO-related GTP-bin 97.4 0.00013 4.3E-09 43.9 3.0 21 55-75 28-48 (201)
488 1wf3_A GTP-binding protein; GT 97.4 0.0001 3.5E-09 47.8 2.7 21 55-75 10-30 (301)
489 2dby_A GTP-binding protein; GD 97.4 0.00014 4.7E-09 48.7 3.3 22 55-76 4-25 (368)
490 3upu_A ATP-dependent DNA helic 97.4 0.00014 4.7E-09 49.4 3.4 23 54-76 47-69 (459)
491 3cmu_A Protein RECA, recombina 97.3 0.00012 4E-09 57.7 3.3 29 49-77 1424-1452(2050)
492 2il1_A RAB12; G-protein, GDP, 97.3 8.1E-05 2.8E-09 44.5 2.0 21 55-75 29-49 (192)
493 2h57_A ADP-ribosylation factor 97.3 6.3E-05 2.1E-09 44.7 1.5 22 55-76 24-45 (190)
494 2j1l_A RHO-related GTP-binding 97.3 0.00011 3.9E-09 44.7 2.6 21 55-75 37-57 (214)
495 3e1s_A Exodeoxyribonuclease V, 97.3 0.00014 4.9E-09 51.0 3.4 23 54-76 206-228 (574)
496 2hup_A RAS-related protein RAB 97.3 0.00015 5.1E-09 43.7 3.0 21 55-75 32-52 (201)
497 2qag_A Septin-2, protein NEDD5 97.3 8.8E-05 3E-09 49.2 2.1 21 55-75 40-60 (361)
498 3cpj_B GTP-binding protein YPT 97.3 0.00017 5.8E-09 44.1 3.2 21 55-75 16-36 (223)
499 3q3j_B RHO-related GTP-binding 97.3 0.00018 6.2E-09 43.9 3.2 21 55-75 30-50 (214)
500 4gzl_A RAS-related C3 botulinu 97.3 0.00017 5.8E-09 43.5 3.0 21 55-75 33-53 (204)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.1e-18 Score=118.06 Aligned_cols=71 Identities=51% Similarity=0.969 Sum_probs=66.8
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+.|+++|++++|++..+..+.+.+.+++.++++|..+++..++|++||||||||||++++++|++++.+
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 35578999999999999999999999999999999999999999999999999999999999999998764
No 2
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3e-18 Score=116.85 Aligned_cols=70 Identities=49% Similarity=0.913 Sum_probs=66.1
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|+++|++|+|++..+..+.+.+.+++.++++|..+++..++|++||||||||||+++++||++++.+
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3478999999999999999999999999999999999999999999999999999999999999998764
No 3
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.3e-18 Score=115.85 Aligned_cols=70 Identities=77% Similarity=1.249 Sum_probs=66.3
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|+++|++++|++..+..+.+.+.+++.++++|..+++..++|++||||||||||+++++||++++.+
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999998764
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.2e-18 Score=116.03 Aligned_cols=70 Identities=51% Similarity=0.936 Sum_probs=66.1
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|+++|++++|++..+..+.+.+.+++.++++|..+++..++|++||||||||||++++++|++++.+
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999998764
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.4e-18 Score=115.85 Aligned_cols=71 Identities=61% Similarity=1.048 Sum_probs=66.8
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+.|+++|++++|++..+..+.+.+.+++.++++|..+++..++|++||||||||||+++++||++++.+
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999998764
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.7e-18 Score=116.53 Aligned_cols=70 Identities=56% Similarity=0.996 Sum_probs=66.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|+++|++|+|++..+..+.+.+.+++.++++|..+++..++|++|+||||||||+|+++||++++.+
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999998764
No 7
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.67 E-value=6.5e-17 Score=104.23 Aligned_cols=68 Identities=44% Similarity=0.832 Sum_probs=56.2
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.++|++++|++..+..+.+.+.+++.++.+++++++.+++|++|+||||||||||+++|++.+++
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC
Confidence 45788999999999999999998999999999999999999999999999999999999999998865
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.56 E-value=1e-15 Score=110.37 Aligned_cols=71 Identities=54% Similarity=0.964 Sum_probs=65.4
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
....+.++|++++|++..+..+.+.+.+++.++++|..++...++||+|+||||||||+|++++|++++.+
T Consensus 195 ~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 195 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp SCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred cccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 34567899999999999999999999999999999999999999999999999999999999999998753
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.51 E-value=2.4e-14 Score=92.86 Aligned_cols=70 Identities=47% Similarity=0.918 Sum_probs=63.1
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.+.++|+++.|++..+..+.+.+.+++.+++.+..+++..+++++|+||||||||+++++|+++++.
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~ 75 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 75 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 3456789999999999999999998998889999999999888889999999999999999999998763
No 10
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.50 E-value=4.9e-14 Score=88.94 Aligned_cols=68 Identities=40% Similarity=0.666 Sum_probs=58.1
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
....+.++|+++.+.+..+..+.+. ...+.+...+.++++.+++|++|+||||||||||+++|++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566789999999999888877774 4446777889999999999999999999999999999999865
No 11
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.46 E-value=2.1e-13 Score=87.26 Aligned_cols=67 Identities=40% Similarity=0.710 Sum_probs=57.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...+.++|+++.+.+..+..+.+ +...+.....+.++++.+++|++|+||||||||||+++|++.+.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 34478999999999988887777 44456778889999999999999999999999999999998865
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.45 E-value=1.7e-13 Score=87.41 Aligned_cols=69 Identities=64% Similarity=1.172 Sum_probs=62.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+.++|+++.|.+..+..+.+.+..++..+.++..+++..+.+++|+||||||||++++++++.++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 456778999999999999999888888888999999999888888999999999999999999998764
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.44 E-value=6.3e-14 Score=101.18 Aligned_cols=70 Identities=47% Similarity=0.914 Sum_probs=65.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.++|+++++++..+..+.+.+.+++.++++|..+++..++|++|+||||||||+++++||.+++.+
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 3467899999999999999999999999999999999999999999999999999999999999998764
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.40 E-value=2.8e-13 Score=85.59 Aligned_cols=67 Identities=40% Similarity=0.718 Sum_probs=50.9
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+.+...|+++.|.+..+..+.+.+.+ +.++..+..++...+++++|+|||||||||++++|++.++.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 45678899999999988877765543 45555667777888889999999999999999999998764
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.38 E-value=2.8e-13 Score=88.80 Aligned_cols=65 Identities=46% Similarity=0.838 Sum_probs=55.4
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+.+.++|+++.|++..+..+.+.+.+++.+++++... ...+++++|+||||||||+++++++.++
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4578999999999999999999888888777776532 3445789999999999999999999987
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.37 E-value=6.1e-13 Score=83.63 Aligned_cols=65 Identities=48% Similarity=0.819 Sum_probs=49.0
Q ss_pred CCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 13 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+.++|+++.|.+..+..+.+.+.. +..+..+..++...+++++|+||||||||+++++++++++.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467899999999988888775544 45555667777778888999999999999999999998764
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.36 E-value=1.5e-12 Score=89.58 Aligned_cols=67 Identities=42% Similarity=0.731 Sum_probs=58.2
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.++|+++.|.+..+..+.+.+. .+.++..+.++++..++|++|+||||||||+++++|+++++.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 567899999999998888888554 3667788899999999999999999999999999999987653
No 18
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.35 E-value=8.2e-13 Score=83.68 Aligned_cols=68 Identities=47% Similarity=0.801 Sum_probs=57.2
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+.+.+.|+++.|.+..+..+.+.+.. +..+..+.+++...+++++|+||||||||+++++|+++++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 456678899999998877777775543 66778888999988999999999999999999999998764
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.34 E-value=6.7e-13 Score=86.63 Aligned_cols=69 Identities=45% Similarity=0.791 Sum_probs=56.9
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.+.++|+++.|.+..+..+.+.+.+++..+.++... ...+++++|+||||||||+++++++.+++.
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN-RKPTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT-CCCCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 356788999999999999999988888777776666542 344677999999999999999999998764
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.33 E-value=1.2e-12 Score=90.60 Aligned_cols=65 Identities=43% Similarity=0.740 Sum_probs=56.5
Q ss_pred CCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 13 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+.++|+++.|.+..+..+.+.+ ..+.++..+.++++.+++|++|+||||||||+|+++|+++++.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv-~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~ 90 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV 90 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHH-HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred CCCCHHHcCCcHHHHHHHHHHH-HHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7889999999999888888754 3466677888999999999999999999999999999998753
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.30 E-value=1.3e-12 Score=86.58 Aligned_cols=68 Identities=46% Similarity=0.833 Sum_probs=54.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+.+.++|+++.|.+..+..+.+.+.+++..+.++.. +...+++++|+||||||||+++++++.+++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4567889999999999998888888777777777654 3445677999999999999999999998764
No 22
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.29 E-value=9.6e-13 Score=94.90 Aligned_cols=68 Identities=54% Similarity=0.974 Sum_probs=61.5
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.++|+++.|.+..+..+.+.+..++.+++++.++++..+.+++|+||||||||||+++|+++++.
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 45678999999999998899888998899999999999888888999999999999999999998764
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.28 E-value=3.8e-12 Score=81.61 Aligned_cols=69 Identities=41% Similarity=0.753 Sum_probs=54.7
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.++++|+++.|.+..+..+.+.+..+..+++++..+. ....+++|+||||||||+++++++++++.
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 3456788999999999988888887777666666655443 23567999999999999999999998753
No 24
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.25 E-value=1.1e-11 Score=85.50 Aligned_cols=66 Identities=58% Similarity=1.018 Sum_probs=60.0
Q ss_pred CCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 13 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.|+++.|.+.....+.+.+...+.+++++..++...+.+++|+||||||||+++++|+.+++.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~ 264 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999998888889999999999988899999999999999999999988753
No 25
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.23 E-value=7.5e-12 Score=85.08 Aligned_cols=67 Identities=45% Similarity=0.783 Sum_probs=54.5
Q ss_pred CCCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
....+.++|+++.|++..+..+.+.+.+++..+.++... ...+++++|+||||||||+++++++.++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG-GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999988888887776666665432 3345789999999999999999999987
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.17 E-value=1.9e-11 Score=80.86 Aligned_cols=68 Identities=38% Similarity=0.839 Sum_probs=53.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+.+...|+++.|.+..+..+.+.+.+++..+.++.... ..+++++|+||+|||||+++++|+.+++.
T Consensus 76 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~ 143 (357)
T 3d8b_A 76 DHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGA 143 (357)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 456778999999999988888887776655555554443 34667999999999999999999988753
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.13 E-value=2e-11 Score=88.12 Aligned_cols=70 Identities=47% Similarity=0.914 Sum_probs=60.8
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.+.|+++.+++..+..+.+.+.++..+...+..+++....+++|+||||||||+|+++|++.++.+
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4567889999999999999898888888888888777877777889999999999999999999988653
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.13 E-value=3.7e-11 Score=80.07 Aligned_cols=68 Identities=47% Similarity=0.805 Sum_probs=53.7
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+.++|+++.|.+..+..+.+.+..+.....++..+.. ..++++|+||+|||||+++++|+.+++.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 3456788999999999888888877666555555555542 3567999999999999999999988754
No 29
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.05 E-value=8.9e-11 Score=70.42 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=31.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..++..+++.+.+| ++|.||||+|||||+++|++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34677788888888 8899999999999999999988
No 30
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.00 E-value=1.5e-11 Score=78.58 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=36.8
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...|....++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 14 ~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 14 VKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp EEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33444445778899999888 8899999999999999999987664
No 31
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.00 E-value=1.4e-11 Score=78.92 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=36.3
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..|....++++++|.+.+| ++|+||||||||||+++|++.+.|.
T Consensus 14 ~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 14 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3344445678899999888 8899999999999999999987664
No 32
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.00 E-value=1.1e-11 Score=77.75 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=35.8
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..|....++++++|.+..| ++|+||||||||||+++|++.+.|.
T Consensus 12 ~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 12 KVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred EEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3344445678888888888 7899999999999999999987664
No 33
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.99 E-value=2.7e-11 Score=76.79 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=34.6
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 55 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT 55 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344678889988888 8999999999999999999988764
No 34
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.99 E-value=1.8e-11 Score=78.68 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=37.0
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|....++++++|.+.+| ++|+||||||||||+++|++.+.|.
T Consensus 31 ~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 31 KKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 33444445788899999888 8899999999999999999987764
No 35
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.98 E-value=1.5e-11 Score=79.13 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=38.0
Q ss_pred hhccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+....++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 17 l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~ 64 (266)
T 4g1u_C 17 LHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS 64 (266)
T ss_dssp EEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS
T ss_pred EEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 344455556788899999888 8999999999999999999987664
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.98 E-value=2.3e-11 Score=76.17 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=36.4
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...+.. .++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 17 s~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 17 SVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp EEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344445 5778888888888 8899999999999999999987764
No 37
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.98 E-value=1.6e-11 Score=77.75 Aligned_cols=44 Identities=32% Similarity=0.408 Sum_probs=35.8
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....++++++|.+.+| ++|+||||||||||+++|++.+.|.
T Consensus 14 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3344444678888888888 8899999999999999999987664
No 38
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.97 E-value=2.7e-11 Score=80.94 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=37.5
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|....++++++|.+..| ++|+||||||||||+++|++...+.
T Consensus 11 s~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 11 SKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 44455556778899999888 8899999999999999999987764
No 39
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.97 E-value=2.4e-11 Score=77.79 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=36.3
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+....++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 23 ~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 23 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3344445678889999888 8899999999999999999987764
No 40
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.96 E-value=2e-11 Score=78.96 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=37.0
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...|....++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 28 ~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 28 GRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 34444445778899998888 8899999999999999999988764
No 41
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.96 E-value=4.4e-11 Score=77.04 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=34.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34778899999888 8899999999999999999988764
No 42
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.95 E-value=5.7e-11 Score=79.29 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=36.9
Q ss_pred hccC-CCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPL-THFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~-~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...| ....++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 21 ~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 21 EKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp EECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4445 4445778889988888 8899999999999999999987664
No 43
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.95 E-value=9e-11 Score=74.14 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=33.0
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 677888888888 8999999999999999999987764
No 44
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.95 E-value=5.4e-11 Score=79.53 Aligned_cols=45 Identities=24% Similarity=0.374 Sum_probs=36.9
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...|....++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 10 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 10 VKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp EEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 34444445678889998888 7899999999999999999987764
No 45
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.95 E-value=4.2e-11 Score=80.60 Aligned_cols=45 Identities=31% Similarity=0.547 Sum_probs=37.3
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|....++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 10 ~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 10 TKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC
Confidence 34445555778899999888 8899999999999999999988764
No 46
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.95 E-value=4.1e-11 Score=75.40 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=34.0
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|+||||||||||+++|++.+.|.
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 34678888888888 8899999999999999999988764
No 47
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.94 E-value=3.2e-11 Score=76.73 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.+.+| ++|+||||||||||+++|++.+.++
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34678889988888 8899999999999999999988764
No 48
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.93 E-value=5.2e-10 Score=69.61 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=22.7
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.-+++++|.+.+| ++|+||||||||||+++|++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567888888888 8999999999999999999976
No 49
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.93 E-value=3.9e-11 Score=77.54 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=33.3
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 678899999888 8999999999999999999987664
No 50
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.93 E-value=5.2e-11 Score=79.56 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=36.1
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..|....++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 11 KYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC
Confidence 3344445678889998888 8899999999999999999987764
No 51
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.93 E-value=3.2e-11 Score=76.31 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=33.3
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++++++|.+.+| ++|+||||||||||+++|++.+.+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34678889988888 899999999999999999988754
No 52
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.92 E-value=3.9e-11 Score=76.62 Aligned_cols=40 Identities=25% Similarity=0.479 Sum_probs=34.2
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...++++++|.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 58 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI 58 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344678888888888 8899999999999999999988764
No 53
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.92 E-value=7.1e-11 Score=78.60 Aligned_cols=44 Identities=20% Similarity=0.415 Sum_probs=36.3
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|... ++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 8 ~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 53 (348)
T 3d31_A 8 SRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53 (348)
T ss_dssp EEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS
T ss_pred EEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC
Confidence 3444444 678889998888 8899999999999999999987764
No 54
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.92 E-value=7.5e-10 Score=69.71 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=24.0
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..++++++|.+.+| ++|.|||||||||++++|++.++
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45788899999888 78999999999999999999765
No 55
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.92 E-value=6.3e-11 Score=79.46 Aligned_cols=45 Identities=24% Similarity=0.486 Sum_probs=36.8
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|....++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 18 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 18 TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 34444445678889999888 7899999999999999999987764
No 56
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.92 E-value=3.7e-09 Score=63.45 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=25.5
Q ss_pred hhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 45 KQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 45 ~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+++......+++|+||||+|||||+++|++.+
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 33434345569999999999999999999876
No 57
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.91 E-value=5.2e-11 Score=79.33 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=35.8
Q ss_pred ccCCCHH--HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFD--LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~--~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.|.... ++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 11 ~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 58 (353)
T 1oxx_K 11 KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58 (353)
T ss_dssp EEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS
T ss_pred EEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 3344444 677889998888 8899999999999999999987764
No 58
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.90 E-value=6.1e-11 Score=79.50 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=35.8
Q ss_pred ccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 36 LPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..|....++++++|.+..| ++|+||||||||||+++|++.+.+.
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC
Confidence 3344445677888888888 8899999999999999999987764
No 59
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.88 E-value=9.6e-11 Score=75.26 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=34.3
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHH
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
.+.|....++++++|.+.+| ++|+||||||||||+++|++.
T Consensus 27 ~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 27 HVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33444445788899999888 889999999999999999996
No 60
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.86 E-value=2.9e-10 Score=72.97 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=33.3
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4678888888888 8899999999999999999987664
No 61
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.86 E-value=1.7e-09 Score=70.93 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=32.7
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..+++++++.+++| ++|+||||||||||+++|++.+
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45788999999888 8999999999999999999876
No 62
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.86 E-value=9.6e-11 Score=74.55 Aligned_cols=39 Identities=31% Similarity=0.541 Sum_probs=32.7
Q ss_pred cCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHH
Q psy6772 37 PLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
.+....++++++|.+.+| ++|+||||||||||+++|++.
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344445678888888888 889999999999999999996
No 63
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.86 E-value=9.9e-11 Score=76.73 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=34.5
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..++++++|.++.| ++|+||||||||||+++|++.+.+.
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 34678889999888 8999999999999999999988764
No 64
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.86 E-value=2e-10 Score=73.23 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=31.7
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++++++|.+.+| ++|+||||+|||||+++|++.+.+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 567788888888 789999999999999999998765
No 65
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.85 E-value=9.9e-09 Score=69.80 Aligned_cols=58 Identities=34% Similarity=0.403 Sum_probs=43.6
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+...|+++.|.+..+..+...+.. + ..+...+++++|+||||||||+++++++++++
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~-------~-~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL-------I-KSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-------H-HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH-------H-HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4566789999999877766554321 1 12333457799999999999999999999987
No 66
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.83 E-value=3.1e-10 Score=72.66 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=32.7
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.++++++|.+.+| ++|+||||||||||+++|++.+.+
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 4678889999888 899999999999999999987753
No 67
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=3.2e-09 Score=64.81 Aligned_cols=36 Identities=31% Similarity=0.327 Sum_probs=23.6
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++++|.+.++ |+|+|++||||||+++.|++.++.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 456677777666 899999999999999999998765
No 68
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.80 E-value=8.2e-10 Score=73.99 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=33.9
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+.+| ++|+||||||||||+++|++.+.|+
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC
Confidence 4678899999998 8899999999999999999987764
No 69
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.80 E-value=4.5e-09 Score=67.96 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=27.5
Q ss_pred CCCCCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 48 ~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+++++|+||||||||+++++||.+++.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34567789999999999999999999998754
No 70
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.80 E-value=1.3e-09 Score=76.17 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=38.4
Q ss_pred hhccCCC--HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTH--FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~--~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|.. ..+++++++.+++| ++|+||||||||||+++|++.+.|.
T Consensus 347 v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 396 (582)
T 3b5x_A 347 VTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD 396 (582)
T ss_pred EEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3444442 45789999999998 8999999999999999999998875
No 71
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.79 E-value=3.8e-09 Score=72.32 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=42.4
Q ss_pred cccchHHHHHHHHHHhhccCCCHHHHhhhCCC-CCcceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 19 DIGGMDMQKQEIREAVELPLTHFDLYKQIGID-PPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.|.+..+..+...+..++....++..+... .+++++|+||||||||+++++||+.++.+
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 56788877777766555544333333333222 34669999999999999999999998764
No 72
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.78 E-value=3.9e-10 Score=76.05 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=35.4
Q ss_pred hccC--CCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 35 ELPL--THFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 35 ~~~~--~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+.| ....++++++|.+..| ++|+||||||||||+++|++.+.
T Consensus 26 ~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 26 TAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 4444 3445788999999888 89999999999999999998653
No 73
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.78 E-value=5.6e-10 Score=72.59 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=32.9
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.++++++|.+.+| ++|+||||||||||+++|++.+.+
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4678888998888 889999999999999999998765
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.77 E-value=3.3e-09 Score=69.21 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=27.4
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+++...+| ++|+||||+||||+++.|++.+.+
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 455656666 889999999999999999998754
No 75
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.77 E-value=9.8e-09 Score=65.83 Aligned_cols=57 Identities=28% Similarity=0.378 Sum_probs=38.2
Q ss_pred cccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCc---ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 19 DIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPR---GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++.|.+..+..+.+.+.... .......+++...+ +++|+||||||||+++++++..+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45666666666655444322 23444555554433 39999999999999999999876
No 76
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.77 E-value=9.1e-10 Score=70.72 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=31.5
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+. | ++|+||||||||||+++|++.+ |.
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~ 56 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY 56 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 46778888888 8 8899999999999999999987 54
No 77
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.77 E-value=5.5e-09 Score=63.42 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=22.1
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+.+| ++|+|||||||||++++|++.+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3445 8899999999999999999875
No 78
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.74 E-value=4e-09 Score=67.31 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=33.7
Q ss_pred hccC-CCHHHHhhhCCCCCc---c--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 35 ELPL-THFDLYKQIGIDPPR---G--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 35 ~~~~-~~~~~~~~~~~~~~~---g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
...+ ....+++++++.+.. + |+|+|++||||||+++.|++.++.
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp -------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred eEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4444 445688999988877 6 899999999999999999998765
No 79
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.74 E-value=2.4e-09 Score=66.62 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=19.4
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHH-HHh
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVA-HHT 76 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~-~~~ 76 (80)
..+..+++|.+.+| ++|+|||||||||++++|+ +.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34667788888777 8899999999999999999 765
No 80
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.73 E-value=4.4e-09 Score=68.95 Aligned_cols=26 Identities=50% Similarity=0.727 Sum_probs=23.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++|+||||+|||||+++|++.++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45899999999999999999999854
No 81
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.72 E-value=4e-09 Score=63.30 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=20.7
Q ss_pred hCCCCCcc--eEEEcCCCCcHHHHHHH
Q psy6772 47 IGIDPPRG--VLLYGPPGCGKTMLAKA 71 (80)
Q Consensus 47 ~~~~~~~g--i~l~Gp~G~GKTtl~~~ 71 (80)
++|.+.+| ++|+||||||||||+++
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHH
Confidence 34556666 88999999999999994
No 82
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.72 E-value=1.2e-08 Score=69.60 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=37.6
Q ss_pred hhccCC-CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLT-HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~-~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+. ...+++++ +.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 137 v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 137 IEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 455554 45688999 999888 8899999999999999999988764
No 83
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.71 E-value=8.5e-09 Score=63.34 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=22.1
Q ss_pred CCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 50 DPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 50 ~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+.+| ++|+||||||||||+++|++.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34555 8899999999999999999986
No 84
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.70 E-value=1.1e-08 Score=68.30 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=27.4
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+++...+| ++|+||||+||||+++.|++.+.+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 455666666 889999999999999999998754
No 85
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.68 E-value=1.1e-08 Score=62.07 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=21.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+||||||||||+++|++.++
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999999864
No 86
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.67 E-value=8.3e-09 Score=65.40 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=29.0
Q ss_pred HhhhCCCCCcc-eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 44 YKQIGIDPPRG-VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 44 ~~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++++|.+.+. ++|+||||||||||+++|++.+.|.
T Consensus 15 l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp EEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 56666655434 7899999999999999999987664
No 87
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.67 E-value=1.7e-09 Score=75.54 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=35.0
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||||||||||+++|++.+.|.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC
Confidence 45788899999888 8999999999999999999998775
No 88
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.66 E-value=9.6e-09 Score=62.74 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..+| ++|.|||||||||++++|++.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444 88999999999999999998873
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.66 E-value=1.3e-08 Score=67.55 Aligned_cols=45 Identities=13% Similarity=0.298 Sum_probs=36.6
Q ss_pred hhccCC-CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLT-HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~-~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...+. ....++.+ +.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 51 l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 51 IDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344444 45678888 888888 8999999999999999999987653
No 90
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.65 E-value=8.9e-08 Score=56.52 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=22.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...++|+||+|+|||++++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4559999999999999999999876
No 91
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.64 E-value=1.5e-08 Score=60.91 Aligned_cols=22 Identities=45% Similarity=0.770 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+|||||||||++++|++..
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 8899999999999999999864
No 92
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.64 E-value=6.7e-09 Score=69.06 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=30.6
Q ss_pred HhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 44 YKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 44 ~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.+++.+..| ++|+||+|||||||+++|++.+.++
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 36677766666 8999999999999999999998764
No 93
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.64 E-value=2.2e-08 Score=59.35 Aligned_cols=26 Identities=31% Similarity=0.717 Sum_probs=23.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.-|+|.|+|||||||+++.|++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34899999999999999999998764
No 94
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.63 E-value=1.5e-08 Score=62.32 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=22.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.||||||||||+++|++.+.+
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999999998763
No 95
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.63 E-value=5.9e-09 Score=68.68 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++.+++.+..| ++|+||||||||||+++|++.+.++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 3667777776666 8999999999999999999998765
No 96
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.63 E-value=2.6e-08 Score=60.81 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=21.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|.|||||||||++++|++.++
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 88999999999999999998765
No 97
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.62 E-value=1.2e-08 Score=67.34 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=31.9
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..+++++++...++ ++|+|+||+|||||+++|++.+.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 45778888888888 88999999999999999998754
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.62 E-value=2.1e-08 Score=64.18 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=28.3
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+++++++ .+| ++|+|||||||||++++|++.+.+
T Consensus 15 ~vl~~i~i--~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 15 DKVLELCH--RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp THHHHGGG--CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 36677773 344 899999999999999999998754
No 99
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.61 E-value=2.8e-08 Score=62.18 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=23.2
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.++| ++|+||||+|||||+++|++.+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3455 889999999999999999998763
No 100
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.60 E-value=7.6e-08 Score=62.47 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=41.0
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.+|+++.|.+.....+...+... .. .-....+++|+||+|||||+++++++..++.
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~-------~~-~~~~~~~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAA-------KK-RNECLDHILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHH-------HH-TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHH-------Hh-cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 44457888888887766665543321 00 0122445999999999999999999988764
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.60 E-value=2.4e-08 Score=61.02 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|.||||||||||+++|++.++
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999875
No 102
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.59 E-value=3.1e-08 Score=60.06 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+|||||||||++++|++.+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 8899999999999999999876
No 103
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.59 E-value=2.1e-09 Score=75.12 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=34.8
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||||||||||+++|++.+.|.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 394 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT 394 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 34788899999888 8999999999999999999998775
No 104
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.59 E-value=1.2e-07 Score=61.98 Aligned_cols=58 Identities=26% Similarity=0.376 Sum_probs=38.8
Q ss_pred CCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 13 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|...|+++.|.+..+..+..... .+.. +.....+++|+||||+|||+++++++..++.
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~-------~~~~-~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLE-------MIRE-GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHH-------HHHT-TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred cCcchhhccChHHHHHHHHHHHH-------HHHc-CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44558888888876554433211 1111 1222456999999999999999999998763
No 105
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=2.5e-08 Score=68.77 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=43.3
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCC-HHHHhhhCC---CCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTH-FDLYKQIGI---DPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..+.+|+++.|.+.....+.+.+...... ...+...+. ...++++|+||+|+|||+++++++++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45567899999888777666654431100 001111111 1345699999999999999999999875
No 106
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.59 E-value=3e-08 Score=68.98 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=34.7
Q ss_pred HhhccCCCHH-HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 33 AVELPLTHFD-LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 33 ~~~~~~~~~~-~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+.+.|.... .+.+++ .+.+| ++|+||||||||||+++|++.+.|.
T Consensus 26 ~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~ 74 (538)
T 1yqt_A 26 DCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN 74 (538)
T ss_dssp CEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred CcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3555554432 456666 66777 8999999999999999999988664
No 107
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.58 E-value=7e-09 Score=72.75 Aligned_cols=45 Identities=27% Similarity=0.348 Sum_probs=37.1
Q ss_pred hccCC-CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 35 ELPLT-HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 35 ~~~~~-~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
...|. ...+++++++.+++| ++|+||||||||||+++|++.+.|.
T Consensus 361 ~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 361 WFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp ECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred EEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 44443 234778899999888 8999999999999999999988774
No 108
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.58 E-value=3.2e-08 Score=65.54 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=28.9
Q ss_pred hhhCCCCCc--c--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 45 KQIGIDPPR--G--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 45 ~~~~~~~~~--g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++.+.+ + ++|+||||||||||+++|++.+.++
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 445666666 5 8999999999999999999998764
No 109
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.58 E-value=4.5e-09 Score=73.57 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=34.3
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+++| ++|+||||||||||+++|++.+.|+
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 397 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 397 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 4778899999888 8999999999999999999988764
No 110
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.58 E-value=2.5e-09 Score=74.87 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=34.9
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||||||||||+++|++.+.+.
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 45788899999888 8999999999999999999988775
No 111
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.58 E-value=4.2e-08 Score=65.87 Aligned_cols=36 Identities=33% Similarity=0.422 Sum_probs=29.7
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+++++++.++.+ ++|+||||+|||||+++|++.++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4667776666665 89999999999999999998764
No 112
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=9.8e-08 Score=62.15 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=36.8
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++..+-+|+++.+.+.....+...+. .. -..+. ++|+||||+||||+++++++.+
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~---~~--------~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD---QP--------RDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT---CT--------TCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh---hC--------CCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 34555668888887765554444220 10 01223 9999999999999999999954
No 113
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.57 E-value=9.3e-09 Score=63.93 Aligned_cols=21 Identities=52% Similarity=0.660 Sum_probs=20.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+||||||||||+++|++.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999999987
No 114
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.57 E-value=4.2e-08 Score=60.07 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
-++|+||||+|||||+++|++.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 389999999999999999998764
No 115
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.57 E-value=1.3e-07 Score=55.90 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..+++|+||+|+|||++++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4558999999999999999999876
No 116
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.57 E-value=1.9e-08 Score=60.27 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.0
Q ss_pred hhhCCCCCcc-eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 45 KQIGIDPPRG-VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 45 ~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+++.+....+ .+|+|||||||||++++|+..+..
T Consensus 18 ~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4455566666 689999999999999999987654
No 117
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.56 E-value=4.5e-08 Score=59.18 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|.||||+||||++++|++.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999998875
No 118
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.55 E-value=3.7e-08 Score=66.88 Aligned_cols=37 Identities=30% Similarity=0.558 Sum_probs=28.9
Q ss_pred HHHhhhCCCCCcc-eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG-VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++.++ +..+.+ ++|+|||||||||++++|++.+.++
T Consensus 157 ~~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 157 DNFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 355666 443444 7899999999999999999988764
No 119
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.54 E-value=3.5e-08 Score=68.46 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=27.4
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+++|.+.+| ++|+|+||||||||++.|++.+.+
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 355666666 889999999999999999988754
No 120
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.54 E-value=3.2e-08 Score=63.06 Aligned_cols=27 Identities=37% Similarity=0.772 Sum_probs=24.0
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+.+++|+||||+|||+++++++..++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456999999999999999999988754
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.54 E-value=7.5e-08 Score=56.88 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.9
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...++|+||+|+|||||++++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34489999999999999999999874
No 122
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.54 E-value=3.1e-08 Score=67.95 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=27.1
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++++.+..| ++|+||||||||||+++|++.+.
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 466666677 89999999999999999998763
No 123
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.53 E-value=4.3e-08 Score=63.75 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=23.2
Q ss_pred Ccc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 52 PRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 52 ~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.++ ++|.||||||||||+++|++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445 88999999999999999999876
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.52 E-value=7.1e-08 Score=60.51 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=22.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.-++|+|||||||||++++|+..++.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34899999999999999999976654
No 125
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.52 E-value=3.5e-07 Score=55.07 Aligned_cols=51 Identities=31% Similarity=0.386 Sum_probs=35.9
Q ss_pred CCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 13 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+..|+++.+.+.....+.+.+... ....++|+||+|+|||++++.++..+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4455777777776666555543221 12349999999999999999999865
No 126
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.52 E-value=6.4e-08 Score=58.29 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+||||||||||+++|++.+.
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999998764
No 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.52 E-value=1.1e-07 Score=60.23 Aligned_cols=30 Identities=43% Similarity=0.624 Sum_probs=25.2
Q ss_pred CCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 49 IDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 49 ~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.....+++|+||+|||||+++++++..++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344556999999999999999999988654
No 128
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.51 E-value=5e-08 Score=67.64 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=30.8
Q ss_pred CHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 40 HFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 40 ~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
....+..+++.+..| ++|.||+||||||++++|++.+.++
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 445555665544444 8999999999999999999988764
No 129
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.51 E-value=6.7e-08 Score=63.30 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.4
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+| ++|.||||||||||+++|++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 4555 889999999999999999998765
No 130
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.51 E-value=2.4e-07 Score=64.48 Aligned_cols=36 Identities=33% Similarity=0.427 Sum_probs=27.9
Q ss_pred HHhhhCCCCCc-ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 43 LYKQIGIDPPR-GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 43 ~~~~~~~~~~~-gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+..+++..+. .++|+|||||||||++++|++.+++
T Consensus 98 ~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 98 AVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34555555533 3899999999999999999998764
No 131
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.50 E-value=6.7e-08 Score=59.46 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.||+||||||+++.|++.++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3899999999999999999998754
No 132
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.50 E-value=7.8e-08 Score=61.70 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=30.4
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++++++.+.+| ++|+||||+|||||++.|++.+.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3566676777777 789999999999999999987643
No 133
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.50 E-value=4.8e-08 Score=68.92 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=34.2
Q ss_pred hhccCCCHH-HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 34 VELPLTHFD-LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 34 ~~~~~~~~~-~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+...|.... .+.+++ .+..| ++|+||||+|||||+++|++.+.|+
T Consensus 97 ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~ 144 (607)
T 3bk7_A 97 CVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN 144 (607)
T ss_dssp EEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred eEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC
Confidence 455554432 456666 56777 8999999999999999999988764
No 134
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.49 E-value=1e-07 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=22.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998764
No 135
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.49 E-value=5.4e-09 Score=77.04 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=33.5
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+..| ++|+||||+|||||+++|+|.+.++
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~ 726 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4678888888888 8999999999999999999987764
No 136
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.49 E-value=1.4e-07 Score=61.13 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=36.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...+..+|+++.|.+..+..+.... +. ....+++|+||+|||||+++++++..++
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~---------~~----~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTA---------VD----PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHH---------HC----GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCCCchhccChHHHHHHHHHHh---------hC----CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3446678999888876443322111 10 1123499999999999999999998775
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.49 E-value=4e-07 Score=55.25 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=35.0
Q ss_pred CCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 14 DVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 14 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+-.|+++.+.+.....+...+... ..+..++|+||+|+|||++++.+++.+.
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344666767666555554433210 1234589999999999999999998764
No 138
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.49 E-value=9.4e-08 Score=58.80 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=21.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|+||||+||||+++.|++.+.+
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999988753
No 139
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=3.3e-07 Score=59.81 Aligned_cols=23 Identities=48% Similarity=0.807 Sum_probs=21.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+||||+||||+++++++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999998763
No 140
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.48 E-value=9.8e-08 Score=58.54 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.3
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+++| ++|+||||||||||+++|++.+.+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3445 899999999999999999986543
No 141
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.47 E-value=8.9e-08 Score=61.51 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=21.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++|+||||+|||||+++|++...+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 37899999999999999999987653
No 142
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.47 E-value=2.8e-07 Score=60.89 Aligned_cols=27 Identities=41% Similarity=0.815 Sum_probs=23.7
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+++|+||+|||||+++++|+..++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345999999999999999999998754
No 143
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.47 E-value=1.5e-07 Score=56.82 Aligned_cols=32 Identities=34% Similarity=0.697 Sum_probs=24.3
Q ss_pred hCCCCCcc--eEEEcCCCCcHHHHHHHHHHH-hCC
Q psy6772 47 IGIDPPRG--VLLYGPPGCGKTMLAKAVAHH-TTV 78 (80)
Q Consensus 47 ~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~-~~~ 78 (80)
.++..+++ |+|+|++||||||+++.|+.. ++.
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~ 37 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGF 37 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 34455455 899999999999999999988 553
No 144
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.46 E-value=1.2e-07 Score=56.31 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|.|+|||||||+++.|++.++
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHhhC
Confidence 88999999999999999998765
No 145
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.46 E-value=5.3e-08 Score=67.77 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=26.4
Q ss_pred CCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 48 GIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 48 ~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++.+.+| ++|+||||||||||+++|++.+.+.
T Consensus 306 ~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~ 339 (538)
T 1yqt_A 306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 339 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3334566 8999999999999999999987664
No 146
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.45 E-value=9.2e-08 Score=66.66 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=23.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++|+||||+|||||+++|++.+.|+
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Confidence 7899999999999999999988765
No 147
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.44 E-value=5.9e-08 Score=68.46 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=26.8
Q ss_pred hCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 47 IGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 47 ~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++.+.+| ++|+||||+|||||+++|++.+.+.
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~ 409 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 409 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 33444566 8999999999999999999987664
No 148
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.44 E-value=7.5e-08 Score=65.65 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=27.4
Q ss_pred HhhhCCCCCcc----eEEEcCCCCcHHHHHHHHHHH
Q psy6772 44 YKQIGIDPPRG----VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 44 ~~~~~~~~~~g----i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
+.++++.+..| ++|+||||+|||||+++|++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 67788888787 579999999999999999985
No 149
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.44 E-value=8.1e-07 Score=57.51 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.6
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..+++|+||+|+||||++++|++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3569999999999999999999876
No 150
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.44 E-value=1.5e-07 Score=57.14 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+++|+||+|+|||+|+++|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999998763
No 151
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.44 E-value=1.4e-07 Score=57.84 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=21.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+||||+|||||+++|++.+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999999863
No 152
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.44 E-value=1.1e-08 Score=75.40 Aligned_cols=40 Identities=30% Similarity=0.492 Sum_probs=32.8
Q ss_pred hccCCCHHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHH
Q psy6772 35 ELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~ 74 (80)
.+.|....++++++|.+.+| ++|+||||||||||+++|++
T Consensus 442 s~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 442 SLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 33444455678888888888 89999999999999999985
No 153
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.3e-07 Score=66.75 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=25.4
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+| ++|+||||+|||||+++|++.+.|+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~ 130 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPN 130 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 4556 8999999999999999999988775
No 154
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.44 E-value=1.4e-07 Score=56.75 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|.|||||||||+++.|++..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999998754
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.44 E-value=1.9e-07 Score=60.04 Aligned_cols=59 Identities=36% Similarity=0.524 Sum_probs=39.6
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+.+|+++.+.+.....+...+... ...+ .....++|+||+|+|||+++++++..++.
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~-------~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~ 64 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAA-------KARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGV 64 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHH-------HHHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHH-------HccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34456888888877665555433221 1111 13456999999999999999999987753
No 156
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.44 E-value=1.9e-07 Score=61.57 Aligned_cols=27 Identities=44% Similarity=0.732 Sum_probs=23.8
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+.+++|+||||||||+++++|+..++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 455999999999999999999998754
No 157
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.43 E-value=1.8e-07 Score=55.61 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|+|||||||+++.|+..++.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4889999999999999999998753
No 158
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=1.9e-07 Score=60.48 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=21.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.++|+||||+|||++++++++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999998753
No 159
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.43 E-value=2e-07 Score=55.78 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+.|+|+|++||||||+++.|+..++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889999999999999999998765
No 160
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.43 E-value=1.8e-07 Score=56.88 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|++||||||+++.|++.++.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999988764
No 161
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.42 E-value=5.8e-08 Score=67.65 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=26.1
Q ss_pred CCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 49 IDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 49 ~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+.+.+| ++|+||||||||||+++|++.+.++
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~ 321 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITAD 321 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 334566 8899999999999999999987764
No 162
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.42 E-value=1.6e-07 Score=58.25 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=18.8
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~ 74 (80)
++|+||||+|||||+++|++
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999983
No 163
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.42 E-value=1.9e-07 Score=55.64 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.|+|.|+|||||||+++.|+..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999998764
No 164
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.42 E-value=5.3e-08 Score=68.77 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=29.9
Q ss_pred HhhhCCCCCcc-------eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 44 YKQIGIDPPRG-------VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 44 ~~~~~~~~~~g-------i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+++++|.+..| ++|+||||+|||||+++|++.+.+.
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~ 405 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 45566777666 7999999999999999999987764
No 165
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.42 E-value=1.6e-08 Score=76.11 Aligned_cols=38 Identities=26% Similarity=0.592 Sum_probs=35.2
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+++| ++|+|++|||||||+++|.+.++|.
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 4789999999999 9999999999999999999999875
No 166
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.41 E-value=2.1e-07 Score=56.92 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=22.0
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+++| ++|+||||+|||||++.|++.+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4455 8899999999999999999654
No 167
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.41 E-value=1.9e-07 Score=59.04 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.||+||||||++++|+..++.
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 899999999999999999977654
No 168
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.41 E-value=2.8e-07 Score=55.24 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.-|+|.|++||||||+++.|+..++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34889999999999999999988764
No 169
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.41 E-value=5.9e-07 Score=58.03 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=38.4
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..+-+|+++.+.+.....+.+.+.. -..+..++++||+|+|||++++++++.++
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3445678888887776666554431 12234477888899999999999998875
No 170
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.40 E-value=1.6e-07 Score=61.34 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++|+|||||||||+++.|++.+.+.
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc
Confidence 8899999999999999999987654
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.39 E-value=2.2e-07 Score=56.96 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=22.9
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...++|+||+|+|||++++.++..+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45599999999999999999998764
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.39 E-value=7.8e-07 Score=56.73 Aligned_cols=54 Identities=30% Similarity=0.382 Sum_probs=38.0
Q ss_pred CCCCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+..+..|+++.|.+.....+...+.. .....++|+||+|+|||++++.++..+
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 345556788888887766555443221 112239999999999999999999875
No 173
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.38 E-value=3.6e-07 Score=57.60 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.8
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...++|+||+|+|||+++++|+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35699999999999999999998754
No 174
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.38 E-value=3.2e-07 Score=56.82 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=21.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+||+|+|||||++.|++.+.
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 88999999999999999998764
No 175
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.38 E-value=1.4e-07 Score=66.11 Aligned_cols=26 Identities=50% Similarity=0.758 Sum_probs=23.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..++|+|||||||||++++|++.+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 34999999999999999999998754
No 176
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.38 E-value=2.1e-07 Score=62.18 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=26.9
Q ss_pred HHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 43 LYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 43 ~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+.++.+....-++|+|||||||||++++|++.+.+
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 345554332222899999999999999999998764
No 177
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.37 E-value=4.7e-08 Score=73.66 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=35.4
Q ss_pred HHHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 41 FDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 41 ~~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
..+++++++.+++| ++|+||+|||||||+++|.+.++++
T Consensus 431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~ 471 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL 471 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS
T ss_pred CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc
Confidence 34788999999999 8999999999999999999999875
No 178
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.37 E-value=1.5e-07 Score=65.02 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=30.3
Q ss_pred HHHHhhhCC-CCCcc--eEEEcCCCCcHHHHHHH--HHHHhC
Q psy6772 41 FDLYKQIGI-DPPRG--VLLYGPPGCGKTMLAKA--VAHHTT 77 (80)
Q Consensus 41 ~~~~~~~~~-~~~~g--i~l~Gp~G~GKTtl~~~--i~~~~~ 77 (80)
...++++++ .+++| ++|+||||||||||+++ +++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 446788888 77777 89999999999999999 566553
No 179
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.37 E-value=2.9e-07 Score=55.00 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=21.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 889999999999999999987754
No 180
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.36 E-value=4.9e-07 Score=61.71 Aligned_cols=26 Identities=42% Similarity=0.845 Sum_probs=23.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+++|+|||||||||++++|++.++.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 56999999999999999999988754
No 181
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=8.2e-07 Score=56.81 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=37.0
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..+..|+++.|.+.....+...+.. .....++|+||+|+|||++++.++..+
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4455677888877766655553321 112249999999999999999999875
No 182
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.35 E-value=3.5e-07 Score=55.99 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=22.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999988765
No 183
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.35 E-value=2.5e-07 Score=61.05 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++|+||||+||||+++.|++.+.+.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 8899999999999999999887543
No 184
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.35 E-value=3e-07 Score=55.96 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.|++||||||+++.|++ ++.
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTC
T ss_pred EEEECCCCCCHHHHHHHHHH-CCC
Confidence 78999999999999999987 543
No 185
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.35 E-value=9.5e-07 Score=57.53 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=34.2
Q ss_pred cccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 17 YSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+.+.+.+.....+...+...+. -.....++|+||+|+|||++++.++..+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45666666665555543322111 1234559999999999999999999876
No 186
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.34 E-value=5.2e-08 Score=73.25 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=34.7
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.+++++++.+++| ++|+||||||||||+++|++.+.+.
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~ 443 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4788999999998 8999999999999999999998875
No 187
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.34 E-value=1e-06 Score=57.48 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=36.6
Q ss_pred CCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 14 DVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 14 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+-.|+++.|.+.....+...+... ..+..++|+||+|+|||++++.+++.+.
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345777777776666555543211 1234589999999999999999998774
No 188
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.34 E-value=3.6e-07 Score=55.99 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=22.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999988765
No 189
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.34 E-value=1.9e-07 Score=62.17 Aligned_cols=27 Identities=41% Similarity=0.655 Sum_probs=23.5
Q ss_pred Ccc-eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 52 PRG-VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 52 ~~g-i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+.+ ++|.|||||||||++++|++.+.+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 444 889999999999999999998754
No 190
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.34 E-value=3.2e-07 Score=63.42 Aligned_cols=37 Identities=16% Similarity=0.030 Sum_probs=29.9
Q ss_pred HHhhhCCCCCcc-eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 43 LYKQIGIDPPRG-VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 43 ~~~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++.+.+. ++|+||||||||||+++|++.+.++
T Consensus 19 ~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 19 GFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp TEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 345666666544 8899999999999999999988764
No 191
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.34 E-value=3.2e-07 Score=55.73 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|+|||||||+++.|++ ++.
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEECCCCcCHHHHHHHHHH-CCC
Confidence 78999999999999999998 553
No 192
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.34 E-value=3.8e-07 Score=57.82 Aligned_cols=24 Identities=42% Similarity=0.599 Sum_probs=21.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|.|||||||||+++.|++.++.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCC
Confidence 689999999999999999988764
No 193
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.33 E-value=4.9e-07 Score=55.22 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..-++|+|||||||||+++.|+..++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34489999999999999999998763
No 194
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.33 E-value=5.6e-07 Score=53.70 Aligned_cols=26 Identities=42% Similarity=0.715 Sum_probs=23.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..|+|.|++||||||+++.|+..++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 34899999999999999999988764
No 195
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.33 E-value=4.2e-07 Score=54.36 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
-|+|.|++||||||+++.|+..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 38899999999999999999987753
No 196
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.33 E-value=9.1e-07 Score=60.46 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=22.6
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..+++|+||||+|||++++.++..+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4558999999999999999999886
No 197
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.32 E-value=4.3e-07 Score=54.71 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=21.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|++.++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEECCCccCHHHHHHHHHHhcCC
Confidence 789999999999999999998763
No 198
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.32 E-value=4.9e-07 Score=54.77 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=22.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999999998765
No 199
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.32 E-value=4.2e-07 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.| ..++.
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTC
T ss_pred EEEECCCCCCHHHHHHHH-HHCCC
Confidence 789999999999999999 76654
No 200
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.32 E-value=2.3e-08 Score=66.70 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=33.0
Q ss_pred CCCHHHHhhhCCCCCcc-eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 38 LTHFDLYKQIGIDPPRG-VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+.+...++++++.+..| ++|+||||+|||||+++|+..++
T Consensus 45 i~nf~~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 45 IRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEETTEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred hccccceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455677888888888 78999999999999999987665
No 201
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.31 E-value=1.1e-07 Score=71.53 Aligned_cols=38 Identities=18% Similarity=0.531 Sum_probs=34.3
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++++++|.+++| ++|+||||||||||+++|++.+.|.
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 3678899999999 8999999999999999999988774
No 202
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.31 E-value=3.5e-07 Score=57.29 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=22.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.+++++||||+|||+++.+|++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998763
No 203
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.31 E-value=4.4e-07 Score=56.28 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=22.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|||||||+|.++.|+..++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 678999999999999999999875
No 204
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.31 E-value=8.2e-07 Score=57.84 Aligned_cols=26 Identities=42% Similarity=0.746 Sum_probs=22.9
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..+++|+||+|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46699999999999999999998653
No 205
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.31 E-value=3.5e-07 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|+..++
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998775
No 206
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.31 E-value=1e-06 Score=57.23 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=34.6
Q ss_pred CccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 15 VQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 15 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..++++.+.+.....+.+.+..... -.....++|+||+|+|||+|++.+++.+
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3345666666665555543322110 1223459999999999999999999876
No 207
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.30 E-value=5.4e-07 Score=56.44 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
+-|+|.|||||||+|.++.|+..++..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 347889999999999999999998753
No 208
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.30 E-value=3.5e-07 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|+..++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998775
No 209
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.29 E-value=4.6e-07 Score=58.76 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.7
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+++|+||||+|||+++++++..++.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 356999999999999999999988754
No 210
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.29 E-value=5.7e-07 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|++||||||+++.|+..++.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3889999999999999999988764
No 211
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.29 E-value=6.5e-07 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.|+|.|++||||||+++.|+..++.+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~ 34 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLE 34 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987753
No 212
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.29 E-value=7.3e-07 Score=51.94 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.0
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...++|+||+|||||+++++|+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3459999999999999999999764
No 213
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.28 E-value=6.6e-07 Score=54.32 Aligned_cols=24 Identities=46% Similarity=0.736 Sum_probs=22.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 889999999999999999988764
No 214
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.28 E-value=5e-07 Score=53.46 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHH
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~ 74 (80)
-|+|.|+|||||||+++.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999998
No 215
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.28 E-value=6.6e-07 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|++||||||+++.|+..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998764
No 216
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.27 E-value=6.2e-07 Score=53.82 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|++||||||+++.|+..++.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3889999999999999999988764
No 217
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.27 E-value=2.1e-07 Score=56.31 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=23.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++|+|++|||||||++.|++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 47899999999999999999987653
No 218
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.26 E-value=6.5e-07 Score=53.83 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=22.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|++||||||+++.|+..++.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998764
No 219
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.26 E-value=1.6e-06 Score=56.60 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=35.5
Q ss_pred ccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCc--ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 16 QYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPR--GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.++++.+.+.....+...+... .. + ..+. .++|+||+|+|||++++.+++.+..
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~------~~--~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNW------LR--N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHH------HH--S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCChHHHHHHHHHHHHHH------Hc--C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3466677776655555433221 11 0 1223 6899999999999999999988753
No 220
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.25 E-value=1.3e-07 Score=66.90 Aligned_cols=28 Identities=46% Similarity=0.744 Sum_probs=25.1
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHH
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLA 69 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~ 69 (80)
..+++++|.+.+| ++|+||||||||||+
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 4678889999888 899999999999997
No 221
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.25 E-value=1e-06 Score=55.23 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=22.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|++.++.
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 789999999999999999998763
No 222
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.25 E-value=9.3e-07 Score=52.01 Aligned_cols=24 Identities=17% Similarity=0.312 Sum_probs=22.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998765
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.24 E-value=6.7e-07 Score=57.18 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=21.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.++|+||||||||+++++|++.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc
Confidence 489999999999999999998763
No 224
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=2.3e-06 Score=54.63 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=35.8
Q ss_pred CCCCccccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 12 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..+-.|+++.+.+.....+.+.+... ..+ .++|+||+|+|||++++.++..+
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~-~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKDG------------NMP-HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHSC------------CCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHcC------------CCC-eEEEECcCCCCHHHHHHHHHHHh
Confidence 34455777777776665555533211 122 39999999999999999999875
No 225
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.24 E-value=6.7e-07 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|.|++||||||+++.|++.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999876
No 226
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.24 E-value=8.3e-07 Score=58.44 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=24.5
Q ss_pred CCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 49 IDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 49 ~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
-..+.+++|+||||||||++++.++.++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34455699999999999999999998873
No 227
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.24 E-value=4.9e-07 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|.|++||||||+++.|++.+.
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999998763
No 228
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.24 E-value=8.6e-07 Score=54.56 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=22.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCc
Confidence 889999999999999999998764
No 229
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.23 E-value=1.6e-07 Score=59.16 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++|+||||||||||+++|++.+.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcccccC
Confidence 5789999999999999999988754
No 230
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.23 E-value=7.7e-07 Score=54.84 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=22.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|++||||||+++.|+..++.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3889999999999999999988764
No 231
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.23 E-value=7.8e-07 Score=53.40 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=21.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|+..+.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 232
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.23 E-value=8.1e-07 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.588 Sum_probs=22.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|++||||||+++.|+..++.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3889999999999999999988764
No 233
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.23 E-value=5.5e-07 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=18.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTT
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 889999999999999999988764
No 234
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.23 E-value=7.7e-07 Score=60.44 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...++|+||||+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999999876
No 235
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.22 E-value=2e-06 Score=61.51 Aligned_cols=26 Identities=35% Similarity=0.620 Sum_probs=23.1
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 51 PPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 51 ~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...+++|+||||||||++++.++..+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34559999999999999999999886
No 236
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.22 E-value=9e-07 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.-|+|.|++||||||+++.|+..++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34889999999999999999988764
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.21 E-value=9.7e-07 Score=57.73 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|+|+||+||||++..||+.+..
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Confidence 889999999999999999987643
No 238
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.21 E-value=6.7e-07 Score=60.69 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|+||||+|||||+++|++.+.+
T Consensus 72 valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTT
T ss_pred EEEECCCCCcHHHHHHHHhCCCCc
Confidence 789999999999999999997654
No 239
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.21 E-value=9.1e-07 Score=58.31 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=21.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|.|||||||||++++|++.+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999998876
No 240
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.21 E-value=1.1e-06 Score=55.37 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.-|+|.|||||||||+++.|+..++.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34899999999999999999988764
No 241
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.20 E-value=1.1e-06 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=21.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCc
Confidence 889999999999999999988764
No 242
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.20 E-value=1.1e-06 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998764
No 243
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.19 E-value=1.2e-06 Score=55.51 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-++|.||+||||||+++.|++.++.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3889999999999999999988764
No 244
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.19 E-value=8.9e-07 Score=61.98 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=24.0
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
..+| ++|+|+|||||||++++|++.+.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3445 889999999999999999998764
No 245
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.19 E-value=1.3e-06 Score=52.82 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
-|+|.|++||||||+++.|++.++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 47899999999999999999987753
No 246
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.19 E-value=2.8e-07 Score=70.97 Aligned_cols=68 Identities=24% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCCCCccccccchHHHHHHHHHHhhccCCC----------HHHHhh------hCCC----------CCcc--eEEEcCCC
Q psy6772 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTH----------FDLYKQ------IGID----------PPRG--VLLYGPPG 62 (80)
Q Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~------~~~~----------~~~g--i~l~Gp~G 62 (80)
....+.|+++++++..+....+.+.+++.. .+.++. .+.. .++| ++|+||+|
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 345588999999998777776666666522 122222 1111 3456 89999999
Q ss_pred CcHHHHHHHHHHHhCC
Q psy6772 63 CGKTMLAKAVAHHTTV 78 (80)
Q Consensus 63 ~GKTtl~~~i~~~~~~ 78 (80)
||||+|+++++.+.+.
T Consensus 1093 ~GKT~la~~~~~~~~~ 1108 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQR 1108 (1706)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhhh
Confidence 9999999999976543
No 247
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.19 E-value=9.6e-07 Score=55.75 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=22.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
-++|.|+|||||||+++.|++.++
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 388999999999999999999875
No 248
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.19 E-value=2.2e-06 Score=56.03 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=32.9
Q ss_pred ccccchHHHHHHHHHHhhccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 18 SDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+++.+.+.....+...+... +.-..+..++|+||+|+|||++++.++.++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~---------~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYF---------VKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHH---------HTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHH---------HcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 55666665555554433211 111234569999999999999999999875
No 249
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.19 E-value=1.3e-06 Score=52.44 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|.|++||||||+++.|+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999887
No 250
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.18 E-value=1.5e-06 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|.|++||||||+++.|++.+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999876
No 251
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.18 E-value=3e-07 Score=53.55 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.7
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...++|+||+|||||+++++|+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC
Confidence 4559999999999999999998654
No 252
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.18 E-value=1.6e-06 Score=57.37 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=25.2
Q ss_pred CCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 48 GIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 48 ~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+..+++| +.|+||||+|||||++.+++.+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5566666 7899999999999999999887
No 253
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.17 E-value=1.6e-06 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|.|++||||||+++.|+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999876
No 254
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.17 E-value=1.3e-06 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=22.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 889999999999999999998764
No 255
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.17 E-value=8.3e-07 Score=53.91 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=21.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|+..++
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 256
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.16 E-value=1.5e-06 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=21.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999988763
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.16 E-value=1.5e-06 Score=53.28 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+.|+|+||||+|||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348899999999999999998765
No 258
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.16 E-value=4.5e-07 Score=58.91 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=20.0
Q ss_pred ccCCCHHHHhhhCCCCCcceEEEcCCCCcHHHHHHHHHHH
Q psy6772 36 LPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~ 75 (80)
..+....++++++|. ++|+|+||+|||||++.|++.
T Consensus 6 ~~~~~~~~l~~~~~~----I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFT----LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ------------CEE----EEEEEETTSSHHHHHHHHHC-
T ss_pred ceECCEEEEcCCCEE----EEEECCCCCCHHHHHHHHhCC
Confidence 334444555555443 589999999999999998875
No 259
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.16 E-value=1.6e-06 Score=54.00 Aligned_cols=24 Identities=42% Similarity=0.686 Sum_probs=22.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+..++.
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 889999999999999999998764
No 260
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.16 E-value=8.6e-07 Score=57.48 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
++|+||||+|||||+++|++...+.
T Consensus 172 v~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred EEEECCCCCcHHHHHHHhccccccc
Confidence 7899999999999999999876653
No 261
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.16 E-value=1.7e-07 Score=66.35 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=26.5
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHH
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~ 73 (80)
.+++++|.+++| ++|+||||||||||+++|.
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 467788888888 8999999999999997654
No 262
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.15 E-value=6.5e-07 Score=52.81 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=21.1
Q ss_pred CCCcc-eEEEcCCCCcHHHHHHHHHHH
Q psy6772 50 DPPRG-VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 50 ~~~~g-i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
....+ .+|+||||+|||+++.+|.-.
T Consensus 20 ~f~~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 20 EFKEGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred EcCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33455 689999999999999999743
No 263
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.15 E-value=5.9e-07 Score=59.75 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=23.8
Q ss_pred hhCCCCCcc-eEEEcCCCCcHHHHHHHHHHH
Q psy6772 46 QIGIDPPRG-VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 46 ~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
+.++.+..| .+|+||||+||||++.+|+..
T Consensus 16 ~~~i~~~~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 16 NVDIEFQSGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEecCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344555667 679999999999999999843
No 264
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.15 E-value=1.5e-06 Score=53.57 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+||||+|||||+..|++.
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999985
No 265
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.14 E-value=1.3e-06 Score=56.45 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=21.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+++|+||||||||+++.+|+..+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhh
Confidence 459999999999999999999865
No 266
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.14 E-value=2e-06 Score=52.37 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=20.8
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHH
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~ 74 (80)
+++| ++|+||||+|||||+..+++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4455 78999999999999999986
No 267
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.14 E-value=1.9e-06 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=22.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|++.++.
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 889999999999999999998764
No 268
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.14 E-value=1.3e-06 Score=56.36 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=21.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
-++|.|||||||||+++.|+..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999876
No 269
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.14 E-value=1.6e-06 Score=58.04 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=21.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+|++|+||||++++|++.++
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 88999999999999999998765
No 270
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.13 E-value=5e-06 Score=59.36 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.0
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 51 PPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 51 ~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...+++|+||||||||++++.++..+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45569999999999999999999876
No 271
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.13 E-value=1e-06 Score=54.88 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCCcc--eEEEcCCCCcHHHHHHHHHHH
Q psy6772 50 DPPRG--VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 50 ~~~~g--i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
...+| ++|.|++||||||++++|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34556 889999999999999999875
No 272
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.13 E-value=1.1e-06 Score=53.39 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=21.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|+..++
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998754
No 273
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.12 E-value=5.4e-07 Score=54.52 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=22.8
Q ss_pred CCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 49 IDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 49 ~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+...++ ++|+|+||+|||||++.+++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455555 8999999999999999988654
No 274
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.12 E-value=1.7e-06 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+|+||+|||||++.+++...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998653
No 275
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.11 E-value=1.8e-06 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|++.++
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 88999999999999999998765
No 276
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.11 E-value=5.2e-07 Score=60.23 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=26.0
Q ss_pred HhhhCCCCCcc-eEEEcCCCCcHHHHHHHHHH
Q psy6772 44 YKQIGIDPPRG-VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 44 ~~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~ 74 (80)
++++++.+..| .+|+||||+||||++.+|+.
T Consensus 17 ~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 17 LAPGTLNFPEGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSEEEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeeeEEEEcCCeEEEECCCCCChhHHHHHHHH
Confidence 45566777777 68999999999999999985
No 277
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.10 E-value=1.9e-06 Score=52.01 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=20.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|.|++||||||+++.|+..+
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999876
No 278
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.10 E-value=2e-06 Score=51.88 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+|++|+|||||++.+++..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999863
No 279
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.10 E-value=2e-06 Score=54.15 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=22.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|++||||||+++.|+..++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3889999999999999999998764
No 280
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.09 E-value=1.3e-06 Score=61.55 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|+||||||||||+++|+|.+.|
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 999999999999999999998654
No 281
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.09 E-value=5.4e-06 Score=60.15 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=22.9
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 51 PPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 51 ~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...+++|+||||+|||++++.+++.+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999876
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.09 E-value=9.3e-07 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998774
No 283
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.08 E-value=2.1e-06 Score=54.71 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+||||+|||||+..+++.+
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999754
No 284
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.08 E-value=2.5e-06 Score=51.37 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|.|++||||||+++.|+..
T Consensus 11 I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 889999999999999999986
No 285
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.08 E-value=1.9e-06 Score=57.60 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+||||+|||||+++|++...
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEECCCCccHHHHHHHHhcccc
Confidence 88999999999999999998765
No 286
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.06 E-value=3.1e-06 Score=51.88 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=20.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|++||||||+++.|+. ++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCC
Confidence 388999999999999999987 553
No 287
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.05 E-value=2.5e-06 Score=55.39 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|+||||+|||||+++|+ ...+
T Consensus 168 ~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH-SCCC
T ss_pred EEEECCCCCCHHHHHHHHH-HhhC
Confidence 7899999999999999999 6554
No 288
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.05 E-value=3e-06 Score=54.97 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=21.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++|||||||++.|++.+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 88999999999999999998775
No 289
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.04 E-value=4.9e-06 Score=54.75 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=28.4
Q ss_pred HHHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 42 DLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 42 ~~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+..++.+...++ ++|+|+||+||||+++.|++.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556667666666 8899999999999999998765
No 290
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.04 E-value=3e-06 Score=51.96 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.++..++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 889999999999999999987664
No 291
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.04 E-value=2.8e-06 Score=58.82 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=22.9
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
...++|+||||+|||+++++|+..++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 34599999999999999999998764
No 292
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.04 E-value=2.4e-06 Score=56.08 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=25.7
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++++...++ ++++|++|+||||++..||+.+.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455555555 88999999999999999998764
No 293
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.04 E-value=2.7e-06 Score=51.49 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=27.5
Q ss_pred HHHhhhCCCCCcc-eEEEcCCCCcHHHHHHHHHH
Q psy6772 42 DLYKQIGIDPPRG-VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 42 ~~~~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~ 74 (80)
.+++.+++..+.. ++++|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4667777776666 99999999999999999875
No 294
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.03 E-value=2.5e-06 Score=58.93 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=25.2
Q ss_pred CCCCCcc--eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 48 GIDPPRG--VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 48 ~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
+..+.+| ++|.||||+|||||++++++...+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3445566 889999999999999999987644
No 295
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.03 E-value=2e-06 Score=62.48 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=25.4
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHH
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
+..++++. ..| ++|.||||+||||++++|++.
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34555666 455 889999999999999999874
No 296
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.02 E-value=1.7e-06 Score=63.67 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=25.9
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHH
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~ 74 (80)
+..++++....| ++|.||||+||||++++|+.
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 344666776666 88999999999999999874
No 297
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.01 E-value=6e-07 Score=58.85 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++|+||||+|||||+++|++...+
T Consensus 176 ~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC----
T ss_pred EEEECCCCCCHHHHHHHhcccccc
Confidence 899999999999999999876643
No 298
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.01 E-value=8.2e-07 Score=60.33 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|+|+||+|||||+++|++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 68999999999999999998654
No 299
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.01 E-value=4.1e-06 Score=51.65 Aligned_cols=21 Identities=43% Similarity=0.741 Sum_probs=18.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+||||+|||||+..++..
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999998777654
No 300
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.01 E-value=4.9e-06 Score=52.70 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=20.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|.|+|||||||+++.|+..
T Consensus 7 Ivl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 889999999999999999987
No 301
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.99 E-value=2.1e-06 Score=52.82 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=21.0
Q ss_pred CCcc-eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 51 PPRG-VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 51 ~~~g-i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...+ .+|+||||+||||++.+|.-.+
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3455 6899999999999999987433
No 302
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.99 E-value=4.2e-06 Score=50.26 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=19.5
Q ss_pred HhhhCCCCCcc-eEEEcCCCCcHHHHHHHHHH
Q psy6772 44 YKQIGIDPPRG-VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 44 ~~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~ 74 (80)
++++++..+.. ++++|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34555555444 89999999999999999986
No 303
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.98 E-value=1.7e-05 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=21.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++|+|+||+||||++..|++.+.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 304
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.98 E-value=5.7e-06 Score=55.75 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
.+|+||||+||||++.+|+..+.+
T Consensus 29 ~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHhhhcc
Confidence 789999999999999999987654
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.96 E-value=7.6e-06 Score=49.55 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.-++|.|++|+|||||++.|.+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 448899999999999999998765
No 306
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.94 E-value=3.5e-06 Score=60.94 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=24.7
Q ss_pred HhhhCCCCCcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 44 YKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 44 ~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..++++. ..-++|.||||+||||++++|++..
T Consensus 569 l~disl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 569 PNDLEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eeeccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3445555 3338899999999999999999753
No 307
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.94 E-value=6.3e-06 Score=54.43 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
..++|+||+||||||++..|+..++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999998875
No 308
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.93 E-value=8.5e-06 Score=51.53 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=23.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
.++|.|+|||||||+++.|+..++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999988754
No 309
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.93 E-value=2.6e-06 Score=55.97 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=20.9
Q ss_pred CCCCcc-eEEEcCCCCcHHHHHHHHHH
Q psy6772 49 IDPPRG-VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 49 ~~~~~g-i~l~Gp~G~GKTtl~~~i~~ 74 (80)
+....| .+|+||||+|||+++.+|+-
T Consensus 19 i~f~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 19 VEFKEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred EcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 334556 68999999999999999863
No 310
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.93 E-value=7.6e-06 Score=53.04 Aligned_cols=32 Identities=25% Similarity=0.143 Sum_probs=24.2
Q ss_pred hhCCCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 46 QIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 46 ~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++++..++-++++|++|+||||++..|++.+.
T Consensus 92 ~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 92 LPVLKDRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp CCCCCSSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred eeecCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555112278899999999999999998764
No 311
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.93 E-value=5.6e-06 Score=48.54 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+|++|+|||||++.+++.
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999874
No 312
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.92 E-value=6.9e-06 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
-|+|.|+|||||||+++.|+..+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999753
No 313
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.92 E-value=8.7e-06 Score=49.77 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
-|+|.|++||||||+++.|+..++.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3889999999999999999998764
No 314
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.91 E-value=3.7e-06 Score=61.93 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=24.4
Q ss_pred HhhhCCCCCcc--eEEEcCCCCcHHHHHHHHH
Q psy6772 44 YKQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73 (80)
Q Consensus 44 ~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~ 73 (80)
..++++....| ++|.||||+||||++++++
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34566666666 7899999999999999994
No 315
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.90 E-value=3.3e-06 Score=55.04 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCCCCcc-eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 48 GIDPPRG-VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 48 ~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+....| .+|+||||+|||+|+.+|.-.+
T Consensus 19 ~l~~~~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 19 LIGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred EEecCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence 4455566 6899999999999999998543
No 316
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.89 E-value=6.9e-06 Score=55.41 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|+|+|||||||+++.++..++.
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGGTC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCc
Confidence 789999999999999999987653
No 317
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.87 E-value=1.3e-05 Score=52.04 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.1
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
...++|+||+|+|||+++++|+...
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 4559999999999999999999854
No 318
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.87 E-value=6e-06 Score=53.86 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|.|++|+||||+++.|.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 7899999999999999999764
No 319
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.87 E-value=6.1e-06 Score=49.16 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+|++|+|||||++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999873
No 320
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.86 E-value=9e-06 Score=48.12 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+|++|+|||||++.+++.
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
No 321
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.85 E-value=1.1e-05 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|+|.|++||||||+++.|+ .++.
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTC
T ss_pred EEEECCCCCCHHHHHHHHH-HCCC
Confidence 8899999999999999998 4543
No 322
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.85 E-value=3.2e-06 Score=62.73 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=25.2
Q ss_pred HHhhhCCCCCc-------c--eEEEcCCCCcHHHHHHHHHHH
Q psy6772 43 LYKQIGIDPPR-------G--VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 43 ~~~~~~~~~~~-------g--i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
+..++++.... | ++|.||||+||||++++| +.
T Consensus 771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 45566666644 4 889999999999999999 54
No 323
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.84 E-value=1.2e-05 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.-|+|.||+||||||++..|+..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3488999999999999999998876
No 324
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.83 E-value=1.2e-05 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+|+||+|||||++.|++.+
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999854
No 325
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.83 E-value=7.6e-06 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+.|+||||+|||||+..++..+.
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999997653
No 326
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.82 E-value=1e-05 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=20.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+|++|+|||||++.+++..
T Consensus 7 i~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998753
No 327
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.81 E-value=1.3e-05 Score=51.86 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=19.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+|+||+|||||++.|.+.
T Consensus 11 VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 11 IAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999875
No 328
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.80 E-value=3e-06 Score=57.54 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=24.5
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHH
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++.++.+ ++|+|+||+|||||+++|++.
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 444555555 899999999999999999875
No 329
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.80 E-value=1.7e-05 Score=47.97 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=20.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
-+.|.|++|+||||++..|+..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 37899999999999999998765
No 330
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.80 E-value=2.2e-05 Score=53.46 Aligned_cols=33 Identities=24% Similarity=0.105 Sum_probs=24.8
Q ss_pred hhCCCCCcceEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 46 QIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 46 ~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
++++..+.-++++|++|+||||++..|++.+..
T Consensus 92 ~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 92 LPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345541222788999999999999999987654
No 331
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.77 E-value=5.1e-06 Score=53.76 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=18.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.||+||||||+++.++..++
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999998654
No 332
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.76 E-value=2.5e-05 Score=51.09 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=23.0
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+..++|+||+|+|||++++.+++.+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHh
Confidence 44589999999999999999998764
No 333
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.75 E-value=1.6e-05 Score=51.68 Aligned_cols=31 Identities=29% Similarity=0.254 Sum_probs=23.7
Q ss_pred hCCCCCcc-eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 47 IGIDPPRG-VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 47 ~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+++..+.. ++++|++|+||||++..|+..+.
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44444322 78899999999999999997663
No 334
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.74 E-value=2.1e-05 Score=53.06 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~ 74 (80)
++|+|+||+|||||+++|++
T Consensus 23 vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 23 TGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp EEEEECSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
Confidence 89999999999999999998
No 335
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.74 E-value=2.3e-05 Score=53.39 Aligned_cols=31 Identities=35% Similarity=0.568 Sum_probs=25.8
Q ss_pred hhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 46 QIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 46 ~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++.+.+.+| ++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 344666677 9999999999999999998764
No 336
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.74 E-value=1.7e-05 Score=52.70 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=22.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
-|+|+||.|||||+|+..||..++
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 388999999999999999998876
No 337
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.73 E-value=2.3e-05 Score=45.21 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 889999999999999999864
No 338
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.72 E-value=1.4e-05 Score=52.96 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+||||+|||+|+..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 339
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.72 E-value=2.4e-05 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
-++++|++|+|||||++.+++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998753
No 340
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.72 E-value=1.8e-05 Score=50.17 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.++|+|++|+|||||++.+++..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
No 341
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.72 E-value=1.8e-05 Score=53.44 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=17.6
Q ss_pred eEEEcCCCCcHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVA 73 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~ 73 (80)
+.|+||||||||||++.++
T Consensus 181 ~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHH
Confidence 7899999999999999776
No 342
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.71 E-value=2e-05 Score=49.12 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.5
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.++++|.||+|+|||+|+..++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3448999999999999999998764
No 343
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.71 E-value=2.2e-05 Score=56.25 Aligned_cols=23 Identities=43% Similarity=0.751 Sum_probs=21.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.++|+||+|||||+++++|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 344
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.71 E-value=2.1e-05 Score=48.81 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|+|++|+|||||++.|.+..
T Consensus 32 i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 8999999999999999998754
No 345
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.71 E-value=1.6e-05 Score=55.95 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=21.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+++|+||||+|||+|+++++..++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 599999999999999999997764
No 346
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.71 E-value=2.7e-05 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 889999999999999998754
No 347
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.71 E-value=2.7e-05 Score=44.74 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999865
No 348
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.71 E-value=8.8e-06 Score=54.00 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=22.9
Q ss_pred hhCCCCCcc-eEEEcCCCCcHHHHHHHHHH
Q psy6772 46 QIGIDPPRG-VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 46 ~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~ 74 (80)
+..+....| .+|+|+||+|||+++.+|.=
T Consensus 18 ~~~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 18 NSRIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 334455567 68999999999999999973
No 349
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.70 E-value=2.5e-05 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
-|+|.||+|||||+|+..|+..++
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 378999999999999999998765
No 350
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.70 E-value=1.7e-06 Score=63.08 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=27.8
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHH-HHHH
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKA-VAHH 75 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~-i~~~ 75 (80)
.++++++.++.| ++|+|+||+|||||++. |++.
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 467788888888 89999999999999996 6543
No 351
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.70 E-value=3.1e-05 Score=47.54 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
-|.|.|+.||||||+++.||..++.+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 38899999999999999999998864
No 352
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.70 E-value=2.7e-05 Score=51.37 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.-++|.||+|||||+|+..|+..++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 3478999999999999999998875
No 353
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.70 E-value=2.4e-05 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+.|+||||+|||||+..++...
T Consensus 64 v~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999888654
No 354
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.69 E-value=2.4e-05 Score=45.56 Aligned_cols=21 Identities=52% Similarity=0.749 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 899999999999999999754
No 355
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.69 E-value=2.6e-05 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=22.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
.++|+||+|||||+++++++..++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 389999999999999999998875
No 356
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.68 E-value=2.7e-05 Score=44.59 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 889999999999999999865
No 357
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.68 E-value=3.9e-06 Score=62.14 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=26.8
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHH
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~ 73 (80)
.++++++.++.| ++|+|+||+|||||++.|.
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 367788888888 8999999999999999853
No 358
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.67 E-value=3.2e-05 Score=44.45 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 359
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.67 E-value=3.3e-05 Score=44.62 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++++|++|+|||||++.+.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8899999999999999998653
No 360
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.67 E-value=3e-05 Score=44.83 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 889999999999999999863
No 361
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.66 E-value=3.3e-05 Score=44.55 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999998864
No 362
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.66 E-value=3.4e-05 Score=44.65 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 889999999999999999864
No 363
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.66 E-value=3.4e-05 Score=45.04 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999854
No 364
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.65 E-value=3.2e-05 Score=44.69 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 789999999999999999854
No 365
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.65 E-value=3.4e-05 Score=47.91 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|+..+.
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78899999999999999998775
No 366
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.65 E-value=3.6e-05 Score=44.93 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998764
No 367
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.65 E-value=2.7e-05 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.8
Q ss_pred cceEE--EcCCCCcHHHHHHHHHHHh
Q psy6772 53 RGVLL--YGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 53 ~gi~l--~Gp~G~GKTtl~~~i~~~~ 76 (80)
..++| +||+|+|||+|++.++..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 44778 9999999999999998765
No 368
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.65 E-value=3.3e-05 Score=45.66 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|+|++|+|||||++.+.+..
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999999988754
No 369
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.64 E-value=3e-05 Score=44.94 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=18.4
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~ 74 (80)
++++|++|+|||||++.+.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999874
No 370
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.64 E-value=3.8e-05 Score=44.28 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 889999999999999999864
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.64 E-value=3.5e-05 Score=46.73 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+|++|+|||||++.+++..
T Consensus 15 i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 15 IIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 372
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.64 E-value=5.3e-05 Score=51.50 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=25.7
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.++++...+.+| ++|.|+||+|||||+..++..+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444445556 8899999999999999998754
No 373
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.63 E-value=3.9e-05 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 374
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.63 E-value=3.9e-05 Score=44.22 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 889999999999999999863
No 375
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.62 E-value=4e-05 Score=45.14 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 14 i~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999863
No 376
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.62 E-value=4.1e-05 Score=45.27 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999875
No 377
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.62 E-value=3.8e-06 Score=62.09 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=26.8
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHHHHHH
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~ 73 (80)
.++++++.++.| ++|+|+||+|||||++.|.
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 367788888888 8899999999999999853
No 378
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.62 E-value=3.8e-05 Score=49.31 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+.++|+||+|+|||+|++.++....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 3588999999999999999988753
No 379
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.62 E-value=4.2e-05 Score=45.00 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+++|++|+|||||++.+.+..
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8899999999999999998643
No 380
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.62 E-value=4e-05 Score=47.73 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=20.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|.|+.||||||+++.|+..+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999887
No 381
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.62 E-value=3.7e-06 Score=57.97 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCHHHHhhhCCCCCcc-eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 39 THFDLYKQIGIDPPRG-VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 39 ~~~~~~~~~~~~~~~g-i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.+...++++.+.+..| .+|+|+||+|||+|+.+|..-+
T Consensus 46 ~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 46 RNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp ESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred ccccceeeEEEecCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444556666777777 6899999999999999997654
No 382
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.62 E-value=4.6e-05 Score=43.94 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||+|++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 383
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.62 E-value=3.4e-05 Score=48.50 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=17.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|+..+.
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78899999999999999998763
No 384
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.61 E-value=2.9e-05 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+|+||+|||||++.|++..
T Consensus 183 vaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 183 VAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 8999999999999999998763
No 385
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.61 E-value=4e-05 Score=44.70 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999865
No 386
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.61 E-value=4.5e-05 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+.++|+||+|+|||+|++.++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 458999999999999999998764
No 387
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.61 E-value=2.2e-05 Score=45.40 Aligned_cols=20 Identities=50% Similarity=0.843 Sum_probs=18.4
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~ 74 (80)
++++|++|+|||||++.+.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78999999999999999864
No 388
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.60 E-value=4.2e-05 Score=44.68 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 11 VTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEEESCTTTTHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999763
No 389
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.60 E-value=5.8e-05 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|++.|++|+||||+++.|+..++.
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 789999999999999999998763
No 390
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.60 E-value=4.6e-05 Score=45.32 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 391
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.59 E-value=4.8e-05 Score=44.06 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 10 i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999753
No 392
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.59 E-value=4.9e-05 Score=44.25 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+++|++|+|||||++.+.+..
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998643
No 393
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.58 E-value=3.3e-05 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|+|.||+||||+++.|+..++
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999998763
No 394
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.58 E-value=3.3e-05 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCcc-eEEEcCCCCcHHHHHHHHHHH
Q psy6772 51 PPRG-VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 51 ~~~g-i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
.+.| ++|+|.+|+|||||++.+.+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3455 899999999999999999864
No 395
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.58 E-value=3.6e-05 Score=45.70 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999864
No 396
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.58 E-value=4.7e-05 Score=44.34 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999853
No 397
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.58 E-value=3.9e-05 Score=55.68 Aligned_cols=23 Identities=48% Similarity=0.720 Sum_probs=21.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.++|+||+|||||+++++|+..+
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 398
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.58 E-value=3.9e-05 Score=49.17 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+|+||+|||||++.+++.
T Consensus 6 I~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 6 IALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 889999999999999999874
No 399
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.57 E-value=5.2e-05 Score=44.91 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+++.
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999865
No 400
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.57 E-value=5.5e-05 Score=44.27 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999998864
No 401
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.57 E-value=4.7e-05 Score=46.60 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.9
Q ss_pred CcceEEEcCCCCcHHHHHHHHHH
Q psy6772 52 PRGVLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 52 ~~gi~l~Gp~G~GKTtl~~~i~~ 74 (80)
..|++|.|+||+||||++..+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45699999999999999988765
No 402
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.57 E-value=5.3e-05 Score=44.39 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 21 i~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 899999999999999999864
No 403
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.57 E-value=3.1e-05 Score=45.21 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 12 i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998753
No 404
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.56 E-value=0.00014 Score=47.87 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=22.0
Q ss_pred CCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 51 PPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 51 ~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+++| +.|+||||+|||+|+..++...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455 7899999999999999998763
No 405
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.56 E-value=5.5e-05 Score=46.01 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.-++|+|++|+|||||+..+++.+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 348899999999999999998774
No 406
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.55 E-value=5.8e-05 Score=44.13 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 13 i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999998864
No 407
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.55 E-value=4.2e-05 Score=45.20 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+|++|+|||||++.+.+.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 26 VAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999865
No 408
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.55 E-value=4e-05 Score=50.49 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=22.9
Q ss_pred HhhhCCCCCcceEEEcCCCCcHHHHHHHHHHH
Q psy6772 44 YKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 44 ~~~~~~~~~~gi~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++++..+ -|+++|++|+|||||+++|.+.
T Consensus 27 l~~i~~~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 27 LPTLWDSLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp C----CCCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 344445555 4899999999999999999984
No 409
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.55 E-value=3.9e-05 Score=45.25 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=19.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999998864
No 410
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.55 E-value=6.1e-05 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
-|+|.||+|+|||+|+..|+..++
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 378999999999999999998765
No 411
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.55 E-value=5.3e-05 Score=44.86 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999999864
No 412
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.55 E-value=5.4e-05 Score=44.55 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 13 i~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998864
No 413
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.54 E-value=2.2e-05 Score=49.58 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=20.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|.|+.||||||+++.|+..+
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999876
No 414
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.54 E-value=4.1e-05 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|++||||||+++.|+..+.
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 415
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.54 E-value=6.4e-05 Score=44.83 Aligned_cols=21 Identities=24% Similarity=0.244 Sum_probs=18.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999877654
No 416
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.53 E-value=6.2e-05 Score=44.97 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999854
No 417
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.53 E-value=6.4e-05 Score=45.01 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|+|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998653
No 418
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.53 E-value=6.3e-05 Score=44.61 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 419
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.52 E-value=6.6e-05 Score=44.57 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 420
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.52 E-value=6.7e-05 Score=43.98 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 889999999999999998853
No 421
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.52 E-value=6.7e-05 Score=44.10 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998864
No 422
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.52 E-value=7.6e-05 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+.|+||||+|||+|+..++...
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHhHHHHHHHHHH
Confidence 7899999999999999998764
No 423
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.51 E-value=6.8e-05 Score=44.65 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|+|++|+|||||++.+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 8999999999999999998654
No 424
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.51 E-value=5.8e-05 Score=52.50 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=22.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTV 78 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~ 78 (80)
|.|.|.+||||||++++|+..++.
T Consensus 398 I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 398 IVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEecccCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999874
No 425
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.51 E-value=3.6e-05 Score=45.71 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998754
No 426
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.50 E-value=7.7e-05 Score=44.81 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+|.+|+|||+|++.+++.
T Consensus 9 v~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 427
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=7e-05 Score=44.51 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 11 i~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHcC
Confidence 899999999999999999863
No 428
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.50 E-value=4.4e-05 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
++++|++|+||||++..|+..+.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999997653
No 429
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.49 E-value=7.8e-05 Score=44.24 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998753
No 430
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.49 E-value=7.1e-05 Score=44.66 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 26 i~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 431
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.49 E-value=5.9e-05 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
-|+|+|.|||||||+++.|+..++
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999998753
No 432
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.49 E-value=7.1e-05 Score=44.96 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 27 i~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999999864
No 433
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.48 E-value=8e-05 Score=44.04 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 434
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.48 E-value=6e-05 Score=44.12 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||+|++.+++.
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998864
No 435
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.48 E-value=6.8e-05 Score=47.13 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|.+|+|||||++.|.+.
T Consensus 24 I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 899999999999999999864
No 436
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.48 E-value=7.5e-05 Score=43.82 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 9 i~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999998843
No 437
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.48 E-value=8.3e-05 Score=44.43 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 31 i~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 438
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.48 E-value=8.3e-05 Score=43.51 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 11 i~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998854
No 439
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.48 E-value=6.2e-05 Score=47.72 Aligned_cols=22 Identities=45% Similarity=0.766 Sum_probs=19.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHH
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~ 75 (80)
.|+|+|.+|+|||||++.+.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3889999999999999999875
No 440
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.48 E-value=7.2e-05 Score=44.78 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998864
No 441
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.48 E-value=8.2e-05 Score=44.24 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999854
No 442
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.47 E-value=8.4e-05 Score=44.24 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 443
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.47 E-value=8.4e-05 Score=44.27 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 444
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.47 E-value=7.2e-05 Score=47.43 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+|++|+|||||++.+++.
T Consensus 8 I~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 8 VALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999864
No 445
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.47 E-value=7.6e-05 Score=44.84 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 446
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.47 E-value=8.4e-05 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
-++|+|.+|+|||||+..++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998764
No 447
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.46 E-value=8.6e-05 Score=44.63 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHH
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~ 75 (80)
-|+|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999998854
No 448
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.46 E-value=2.7e-05 Score=57.40 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=23.6
Q ss_pred HHhhhCCCCCcc--eEEEcCCCCcHHHHH
Q psy6772 43 LYKQIGIDPPRG--VLLYGPPGCGKTMLA 69 (80)
Q Consensus 43 ~~~~~~~~~~~g--i~l~Gp~G~GKTtl~ 69 (80)
.++++++.++.| ++|+|+||||||||+
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhH
Confidence 367788888888 889999999999997
No 449
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.46 E-value=0.00011 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|.|.|++||||||+++.++..+.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 78899999999999999998764
No 450
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.46 E-value=9.2e-05 Score=44.12 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||+|++.+.+.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 899999999999999888764
No 451
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.46 E-value=8.9e-05 Score=49.34 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
+.|+|+||+|||||+..++...
T Consensus 66 i~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999888654
No 452
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.45 E-value=9.2e-05 Score=44.39 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 31 i~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999999854
No 453
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.45 E-value=8.8e-05 Score=45.62 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=17.5
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~ 74 (80)
+.|.|+||+|||+++..++.
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999877653
No 454
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.45 E-value=9.7e-05 Score=47.33 Aligned_cols=22 Identities=14% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+++|++|+|||||+++|++.-
T Consensus 27 I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 27 IVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHHCCC
Confidence 9999999999999999998753
No 455
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.44 E-value=9.4e-05 Score=44.80 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=17.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++||+|+||||++..++..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999998655543
No 456
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.44 E-value=6.8e-05 Score=44.26 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++++|++|+|||||++.+.+.
T Consensus 21 i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 21 LLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998754
No 457
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=8.9e-05 Score=45.00 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999998754
No 458
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.43 E-value=9.2e-05 Score=45.02 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 459
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.42 E-value=7.4e-05 Score=46.45 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|.|.|++||||||.++.|+..+.
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78899999999999999998764
No 460
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.42 E-value=0.00011 Score=44.45 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+|++|+|||||++.+.+.
T Consensus 10 i~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999864
No 461
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.41 E-value=7.3e-05 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+|+||+|||||++.+++..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999998653
No 462
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.41 E-value=0.00012 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 53 RGVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 53 ~gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
..++++|++|+|||++++.++..+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 348999999999999999998764
No 463
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.41 E-value=0.0001 Score=46.14 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhCCC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTTVL 79 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~~~ 79 (80)
|.|.|++||||||+++.||..++.+
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~~ 41 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGIH 41 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCE
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCc
Confidence 8899999999999999999988753
No 464
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.41 E-value=9.2e-05 Score=43.85 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=18.8
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~ 74 (80)
|+++|++|+|||||++.+.+
T Consensus 19 i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 19 VIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999984
No 465
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.41 E-value=8.3e-05 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999998743
No 466
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.40 E-value=0.00012 Score=52.06 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|.|.+||||||+++.|+..+
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999887
No 467
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.00011 Score=44.42 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 28 LVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 468
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.40 E-value=0.00012 Score=48.36 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|+|++|+||||++..++..+
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998764
No 469
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.39 E-value=9.5e-05 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=20.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|+|++|+|||||++.|.+.-
T Consensus 25 I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 25 IILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998653
No 470
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.39 E-value=7.2e-05 Score=44.85 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+|+|++|+|||+|++.+.+..
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999887643
No 471
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.39 E-value=0.00066 Score=47.91 Aligned_cols=19 Identities=37% Similarity=0.746 Sum_probs=15.0
Q ss_pred eEEEcCCCCcHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVA 73 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~ 73 (80)
.+|.||||||||+.+-.+.
T Consensus 208 ~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHH
Confidence 5788999999998655444
No 472
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.39 E-value=0.0001 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999998753
No 473
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.39 E-value=9.6e-05 Score=47.13 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHH
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~ 75 (80)
.|+|+|.+|+|||||++.+.+.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999875
No 474
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.39 E-value=5.9e-05 Score=44.29 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.3
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~ 74 (80)
++++|++|+|||||++.+.+
T Consensus 21 i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 21 ILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999998763
No 475
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.39 E-value=0.00014 Score=46.11 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=20.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+++|.+|+|||||++.+.+.-
T Consensus 29 i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEeCCCCCHHHHHHHHHCCC
Confidence 9999999999999999998753
No 476
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.38 E-value=0.00017 Score=46.90 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=24.1
Q ss_pred HhhhCCCCCcc--eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 44 YKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 44 ~~~~~~~~~~g--i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++.+.-.+.+| ++|.|+||+|||+|+..++...
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34433334555 8899999999999999888553
No 477
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.38 E-value=5.3e-05 Score=45.65 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=18.4
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAH 74 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~ 74 (80)
|+|+|++|+|||||++.+++
T Consensus 26 i~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEECSTTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999999999864
No 478
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.38 E-value=8.4e-05 Score=43.88 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999853
No 479
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.37 E-value=7.7e-05 Score=44.31 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 20 i~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 20 VVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEECCTTSCHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998753
No 480
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.37 E-value=0.00011 Score=43.93 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 23 i~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998754
No 481
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.37 E-value=9e-05 Score=45.51 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=19.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 32 I~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 32 IILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEECSTTSSHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999998754
No 482
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.36 E-value=0.00013 Score=43.38 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||+|++.+.+.
T Consensus 21 i~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999865
No 483
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.36 E-value=5.9e-05 Score=44.33 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=8.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999988754
No 484
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.36 E-value=0.0001 Score=50.25 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.|+++|++|+||||++..|+..+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999765
No 485
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.36 E-value=0.0001 Score=47.76 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
+.|+|+||+|||+|+..++..
T Consensus 101 ~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 486
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.36 E-value=0.0001 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
|+|.|.+||||||+++.|+..++
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999998764
No 487
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.36 E-value=0.00013 Score=43.93 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 488
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.36 E-value=0.0001 Score=47.81 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
++|+|.||+|||||++.+.+.
T Consensus 10 V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 10 VAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999864
No 489
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.35 E-value=0.00014 Score=48.69 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
++|+|+||+|||||+++|.+.-
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998763
No 490
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.35 E-value=0.00014 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
.++|.|++|||||+++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 48899999999999999988765
No 491
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.35 E-value=0.00012 Score=57.68 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCCCcceEEEcCCCCcHHHHHHHHHHHhC
Q psy6772 49 IDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77 (80)
Q Consensus 49 ~~~~~gi~l~Gp~G~GKTtl~~~i~~~~~ 77 (80)
+...++++|+||||||||+|+.+++.+..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 54555599999999999999999886643
No 492
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.35 E-value=8.1e-05 Score=44.48 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998753
No 493
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.34 E-value=6.3e-05 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHh
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
|+++|++|+|||||++.+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999987654
No 494
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.34 E-value=0.00011 Score=44.65 Aligned_cols=21 Identities=48% Similarity=0.705 Sum_probs=18.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999853
No 495
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.33 E-value=0.00014 Score=50.96 Aligned_cols=23 Identities=48% Similarity=0.611 Sum_probs=20.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHh
Q psy6772 54 GVLLYGPPGCGKTMLAKAVAHHT 76 (80)
Q Consensus 54 gi~l~Gp~G~GKTtl~~~i~~~~ 76 (80)
-++|.|+|||||||++..++..+
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998754
No 496
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.33 E-value=0.00015 Score=43.73 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 32 i~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhhC
Confidence 899999999999999998753
No 497
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.32 E-value=8.8e-05 Score=49.22 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.|.+.
T Consensus 40 I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 789999999999999998653
No 498
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00017 Score=44.06 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||||++.+.+.
T Consensus 16 i~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEESCTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999998864
No 499
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.29 E-value=0.00018 Score=43.86 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+|+|++|+|||+|++.+.+.
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999998764
No 500
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.29 E-value=0.00017 Score=43.54 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHH
Q psy6772 55 VLLYGPPGCGKTMLAKAVAHH 75 (80)
Q Consensus 55 i~l~Gp~G~GKTtl~~~i~~~ 75 (80)
|+++|++|+|||||++.+.+.
T Consensus 33 i~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 33 CVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999988753
Done!