RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6772
(80 letters)
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 142 bits (359), Expect = 6e-44
Identities = 45/72 (62%), Positives = 60/72 (83%)
Query: 5 KPTKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCG 64
K + DE+P+V+Y DIGG++ Q QEIRE VELPL H +L++++GI+PP+G+LLYGPPG G
Sbjct: 4 KAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTG 63
Query: 65 KTMLAKAVAHHT 76
KT+LAKAVA T
Sbjct: 64 KTLLAKAVATET 75
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A
{Mus musculus}
Length = 301
Score = 120 bits (303), Expect = 2e-35
Identities = 33/64 (51%), Positives = 48/64 (75%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E P V + DIGG++ K+E++E V+ P+ H D + + G+ P +GVL YGPPGCGKT+LAK
Sbjct: 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67
Query: 71 AVAH 74
A+A+
Sbjct: 68 AIAN 71
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 119 bits (301), Expect = 2e-35
Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
P+V ++DIG ++ ++E+ A+ P+ + D +K +G+ P GVLL GPPGCGKT+LAK
Sbjct: 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62
Query: 71 AVAH 74
AVA+
Sbjct: 63 AVAN 66
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 117 bits (295), Expect = 8e-33
Identities = 33/64 (51%), Positives = 48/64 (75%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E P V + DIGG++ K+E++E V+ P+ H D + + G+ P +GVL YGPPGCGKT+LAK
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 71 AVAH 74
A+A+
Sbjct: 530 AIAN 533
Score = 110 bits (277), Expect = 2e-30
Identities = 37/66 (56%), Positives = 48/66 (72%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
+V Y D+GG Q +I+E VELPL H L+K IG+ PPRG+LLYGPPG GKT++A+
Sbjct: 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 71 AVAHHT 76
AVA+ T
Sbjct: 257 AVANET 262
Score = 45.6 bits (108), Expect = 2e-07
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGK 65
+ V +DI +M Q ++++ F Q G P +G
Sbjct: 744 RRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSGGGTGGSVYT 797
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 116 bits (292), Expect = 9e-33
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+ +V Y DIGG Q +I+E VELPL H L+K IG+ PPRG+LLYGPPG GKT++A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 70 KAVAHHTTV 78
+AVA+ T
Sbjct: 256 RAVANETGA 264
Score = 28.6 bits (64), Expect = 0.17
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 11 EKPDVQYSDIGGMDMQKQE 29
E P V + DIGG
Sbjct: 470 EVPQVTWEDIGGRSHHHHH 488
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 105 bits (265), Expect = 8e-30
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
+ V+++DI G D+ KQ ++E V LP +L+ + P +G+LL+GPPG GKT+LA
Sbjct: 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLA 71
Query: 70 KAVAH 74
+AVA
Sbjct: 72 RAVAT 76
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 104 bits (261), Expect = 3e-29
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
EKP+V++ D+ G++ K+ ++EAV LP+ L+K P G+LLYGPPG GK+ LA
Sbjct: 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLA 68
Query: 70 KAVA 73
KAVA
Sbjct: 69 KAVA 72
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 103 bits (260), Expect = 6e-29
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
E+P+V++SD+ G++ K+ ++EAV LP+ L+ P RG+LL+GPPG GK+ LA
Sbjct: 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLA 62
Query: 70 KAVA 73
KAVA
Sbjct: 63 KAVA 66
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 104 bits (261), Expect = 1e-28
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
D V++ DI G D+ KQ ++E V LP +L+ + P RG+LL+GPPG GKTMLA
Sbjct: 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLA 165
Query: 70 KAVAH 74
KAVA
Sbjct: 166 KAVAA 170
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 103 bits (259), Expect = 1e-28
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
D P V + DI G++ K I+E V P+ D++ + PP+G+LL+GPPG GKT++
Sbjct: 76 DHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIG 134
Query: 70 KAVAH 74
K +A
Sbjct: 135 KCIAS 139
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 91.9 bits (228), Expect = 6e-24
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
E+P+V++SD+ G++ K+ ++EAV LP+ L+ P RG+LL+GPPG GK+ LA
Sbjct: 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLA 184
Query: 70 KAVAHH 75
KAVA
Sbjct: 185 KAVATE 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 88.7 bits (220), Expect = 4e-23
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
EKP+V++ D+ G++ K+ ++EAV LP+ L+K P G+LLYGPPG GK+ LA
Sbjct: 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLA 101
Query: 70 KAVA 73
KAVA
Sbjct: 102 KAVA 105
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 82.9 bits (205), Expect = 2e-21
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 5 KP---TKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPP 61
KP T ++ + I + + EL + + P VLL GPP
Sbjct: 17 KPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDR---TPLVSVLLEGPP 73
Query: 62 GCGKTMLAKAVAHHT 76
GKT LA +A +
Sbjct: 74 HSGKTALAAKIAEES 88
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 81.4 bits (201), Expect = 1e-20
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 19 DIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76
+ G + + + V +F K I P + ++G G GK+ + V
Sbjct: 5 KLDGFYIAPAFMDKLVVHITKNF--LKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM 60
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 74.6 bits (184), Expect = 4e-18
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
N EKP+V++ D+ G + K+E+ E V+ L + + Y +G P+GVLL GPPG GKT+L
Sbjct: 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLL 60
Query: 69 AKAVA 73
AKAVA
Sbjct: 61 AKAVA 65
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 72.0 bits (177), Expect = 3e-17
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
E P V + D+ G + K+E++E VE L + + ++G P+GVLL GPPG GKT L
Sbjct: 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65
Query: 69 AKAVA 73
A+AVA
Sbjct: 66 ARAVA 70
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 72.4 bits (178), Expect = 3e-17
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
E P V + D+ G + K+E++E VE L + + ++G P+GVLL GPPG GKT LA
Sbjct: 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90
Query: 70 KAVA 73
+AVA
Sbjct: 91 RAVA 94
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 72.0 bits (177), Expect = 3e-17
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
+++ ++D+ G D K+E+ E VE L ++++G P+GVL+ GPPG GKT+L
Sbjct: 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLL 61
Query: 69 AKAVA 73
AKA+A
Sbjct: 62 AKAIA 66
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 70.7 bits (174), Expect = 1e-16
Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 15 VQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVA 73
V + D+ GM K E+RE V+ L + + Q+G P+G LL GPPGCGKT+LAKAVA
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 71.1 bits (175), Expect = 1e-16
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLA 69
E P V + D+ G + K+E++E VE L + + ++G P+GVLL GPPG GKT LA
Sbjct: 23 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81
Query: 70 KAVA 73
+AVA
Sbjct: 82 RAVA 85
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 70.7 bits (174), Expect = 2e-16
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 5 KPTKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCG 64
K V + D+GG + +E++E VE L + +IG P+G+LL GPPG G
Sbjct: 3 TMYKPSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTG 61
Query: 65 KTMLAKAVA 73
KT+LA+AVA
Sbjct: 62 KTLLARAVA 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 1e-09
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 26 QKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVLC 80
++R+A L + + P + VL+ G G GKT +A V V C
Sbjct: 136 PYLKLRQA---------LLE---LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 46.0 bits (110), Expect = 1e-07
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 43 LYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76
L + I ++L+GPPG GKT LA+ +A +
Sbjct: 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 45.6 bits (108), Expect = 1e-07
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 17 YSDIGGMDMQKQEIREAVE----LPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAV 72
+ G +++ + F + G R +LYGPPG GKT A V
Sbjct: 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 97
Query: 73 AHH 75
A
Sbjct: 98 AQE 100
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 44.0 bits (103), Expect = 7e-07
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 10 DEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVL---LYGPPGCGKT 66
E + ++ G+ K IRE L L +++G+ L G PG GKT
Sbjct: 23 KEVLEELDRELIGLKPVKDRIRETAALLLVER-ARQKLGLAHETPTLHMSFTGNPGTGKT 81
Query: 67 MLAKAVAH 74
+A +A
Sbjct: 82 TVALKMAG 89
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A
{Homo sapiens} PDB: 2xsz_A*
Length = 456
Score = 43.8 bits (103), Expect = 7e-07
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 28 QEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAH 74
+ REA + + +L K + R VLL GPPG GKT LA A+A
Sbjct: 43 ENAREACGVIV---ELIKSKKM-AGRAVLLAGPPGTGKTALALAIAQ 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 43.1 bits (102), Expect = 9e-07
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 24 DMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
D + + E + ++ K+ +G+ L+G G GKT L A+A+
Sbjct: 31 DDGRIKAIRFAERFVAEYEPGKK-----MKGLYLHGSFGVGKTYLLAAIANE 77
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 42.4 bits (100), Expect = 2e-06
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 45 KQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ +G+ G PG GKT LA A
Sbjct: 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 42.1 bits (99), Expect = 3e-06
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 24 DMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
D+ EA L D +Q +G+ LYG G GK+ L A+AH
Sbjct: 127 DVNNASRMEAFSAIL---DFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 39.9 bits (93), Expect = 2e-05
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76
G+ P +++ G P GKT L++A+A
Sbjct: 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 39.5 bits (93), Expect = 2e-05
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 56 LLYGPPGCGKTMLAKAVAH 74
L GPPG GKT A A+A
Sbjct: 42 LFSGPPGTGKTATAIALAR 60
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman
fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 39.7 bits (93), Expect = 2e-05
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
V L GPPG K+++A+ +
Sbjct: 44 VFLLGPPGIAKSLIARRLKFA 64
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 39.2 bits (92), Expect = 3e-05
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 56 LLYGPPGCGKTMLAKAVAH 74
L GPPG GKT A A+A
Sbjct: 42 LFSGPPGTGKTATAIALAR 60
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 39.0 bits (91), Expect = 3e-05
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 15/57 (26%)
Query: 18 SDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPR-GVLLYGPPGCGKTMLAKAVA 73
S I G + +++ A+ L +DP GVL++G G GK+ +A+A
Sbjct: 24 SAIVGQE----DMKLALLLTA----------VDPGIGGVLVFGDRGTGKSTAVRALA 66
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 38.5 bits (90), Expect = 4e-05
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 56 LLYGPPGCGKTMLAKAVAH 74
L GPPG GKT A A+A
Sbjct: 50 LFAGPPGVGKTTAALALAR 68
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 38.7 bits (91), Expect = 5e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+L GP G GKT LA +++
Sbjct: 58 ILFSGPAGLGKTTLANIISY 77
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker
B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 38.3 bits (90), Expect = 5e-05
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
VLL GPPG GKT LA +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIAS 73
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 38.3 bits (90), Expect = 6e-05
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+LL+GPPG GKT LA +AH
Sbjct: 41 LLLFGPPGLGKTTLAHVIAH 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 38.3 bits (89), Expect = 7e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 46 QIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79
P V +YG GCGK++LA ++L
Sbjct: 141 WKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLL 174
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 37.4 bits (87), Expect = 1e-04
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 46 QIGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+ + R VLL G PG GK+ML +A+A
Sbjct: 54 KTAANQKRHVLLIGEPGTGKSMLGQAMA 81
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 37.1 bits (85), Expect = 2e-04
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 24 DMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ Q Q++ + + + G PR L G PG GKT+ + +
Sbjct: 23 EQQLQQLDILLG------NWLRNPGHHYPR-ATLLGRPGTGKTVTLRKLWEL 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 37.0 bits (85), Expect = 2e-04
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 52 PRGVLLYGPPGCGKTMLAKAV 72
P + +YG G GKT + K V
Sbjct: 45 PNNIFIYGLTGTGKTAVVKFV 65
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 37.0 bits (85), Expect = 2e-04
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ L G G GKT ++K + +
Sbjct: 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 36.1 bits (83), Expect = 3e-04
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
G+ R L+ G G GKT+ + ++
Sbjct: 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
Score = 32.6 bits (74), Expect = 0.006
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
G +L G G GKT+L +
Sbjct: 277 GFFKDSIILATGATGTGKTLLVSRFVEN 304
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 35.1 bits (80), Expect = 9e-04
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 51 PPRGV-LLYGPPGCGKTMLAKAVAHH 75
V L P G GK+MLA +A
Sbjct: 28 VAGTVGALVSPGGAGKSMLALQLAAQ 53
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 34.9 bits (80), Expect = 0.001
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLA 69
G VLL G G GKT A
Sbjct: 26 GFPEGTTVLLTGGTGTGKTTFA 47
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 34.3 bits (78), Expect = 0.001
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
+LL G PG GK+ +A+A+A+
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANL 32
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 34.3 bits (79), Expect = 0.002
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLA 69
GI VLL G PG GKT+ +
Sbjct: 19 GIPERNVVLLSGGPGTGKTIFS 40
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 33.8 bits (78), Expect = 0.002
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLA 69
GI + L G PG GKT+ +
Sbjct: 19 GIPQGFFIALTGEPGTGKTIFS 40
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 33.9 bits (77), Expect = 0.002
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78
+P R V++ G G GKT +A VA T +
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGL 55
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 33.8 bits (77), Expect = 0.002
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ L+G G GK+++A
Sbjct: 150 LDSFFLFLHGRAGSGKSVIASQALSK 175
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 33.6 bits (77), Expect = 0.002
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+L YGPPG GKT A+A
Sbjct: 49 LLFYGPPGTGKTSTIVALAR 68
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 33.4 bits (77), Expect = 0.003
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 57 LYGPPGCGKTMLAKAVAHH 75
++G G GK+ L +A
Sbjct: 41 VWGEEGAGKSHLLQAWVAQ 59
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 33.5 bits (77), Expect = 0.003
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 56 LLYGPPGCGKTMLAKAVAHHTTVLC 80
L+ PG G L A++ +LC
Sbjct: 28 LIQALPGMGDDALIYALSR--YLLC 50
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 33.5 bits (76), Expect = 0.003
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHHT 76
P +++ G G GK+ + +A+A
Sbjct: 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 33.3 bits (77), Expect = 0.003
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 57 LYGPPGCGKTMLAKAVA 73
L GPPG GKT LAK++A
Sbjct: 113 LAGPPGVGKTSLAKSIA 129
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 32.9 bits (76), Expect = 0.005
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
+LL GP G GKT+LA+ +A
Sbjct: 54 ILLIGPTGSGKTLLAETLA 72
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 32.7 bits (74), Expect = 0.005
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHHT 76
+L G G GK+ +A VAH
Sbjct: 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 32.9 bits (75), Expect = 0.005
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+L YGPPG GKT A+
Sbjct: 61 MLFYGPPGTGKTSTILALTK 80
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 32.6 bits (75), Expect = 0.006
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
+LL GP G GKT++A+ +A
Sbjct: 75 ILLIGPTGSGKTLMAQTLA 93
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 32.7 bits (74), Expect = 0.006
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
R L GP GKT LA A+
Sbjct: 170 RYWLFKGPIDSGKTTLAAALLEL 192
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 32.4 bits (74), Expect = 0.007
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+++ G PG GKT +AH
Sbjct: 45 MIISGMPGIGKTTSVHCLAH 64
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 32.5 bits (74), Expect = 0.007
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
++L G PG GK+ +K +A
Sbjct: 7 IILTGLPGVGKSTFSKNLAKI 27
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 32.2 bits (73), Expect = 0.007
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+ GPP GK+ML ++ H
Sbjct: 129 LAFIGPPNTGKSMLCNSLIH 148
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 32.2 bits (72), Expect = 0.008
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 23 MDMQK---QEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHT 76
M++Q E + A+ L K+ P +LL G G GKT + +
Sbjct: 1 MEIQDYTDSEFKHALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.2 bits (73), Expect = 0.009
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 53 RGVLLYGPPGCGKTMLAKAV 72
R ++L GPPG GKTM +
Sbjct: 1305 RPLILCGPPGSGKTMTLTST 1324
Score = 26.8 bits (59), Expect = 0.68
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 18/73 (24%)
Query: 13 PDVQYSDIGGMDMQKQEIREAV-ELPLTHFD--------LYKQIGIDPPR-GVLLYGPPG 62
P Q I ++K +I+E + L L++ + I GV++ GP G
Sbjct: 861 PGSQLQPIQMDQLRK-KIQEIAKQRHLVTKQEWVEKILQLHQILNI---NHGVMMVGPSG 916
Query: 63 CGKT----MLAKA 71
GKT + +A
Sbjct: 917 GGKTTSWEVYLEA 929
Score = 26.4 bits (58), Expect = 0.96
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 24 DMQKQEIREAVELPLTHFDLYKQIGIDPPRG-VLLYGPPGCGKTMLAKAVAH 74
D+ E ++ H ++ P+G LL G G GK++L++ VA
Sbjct: 1622 DVPLVLFNEVLD----HILRIDRV-FRQPQGHALLIGVSGGGKSVLSRFVAW 1668
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 32.0 bits (72), Expect = 0.009
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTTVLC 80
+L+ G PG GKT +A+ +A
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELDGFQ 38
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 31.8 bits (72), Expect = 0.010
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
++ GP G GK+ K +A
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQ 25
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 32.2 bits (73), Expect = 0.010
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+LLYGP G GK A+
Sbjct: 39 LLLYGPNGTGKKTRCMALLES 59
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 32.0 bits (72), Expect = 0.011
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 49 IDPPRGVLLYGPPGCGKTMLAKAVAH 74
++ LL G GK+ L +A +
Sbjct: 28 LENYPLTLLLGIRRVGKSSLLRAFLN 53
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 31.7 bits (71), Expect = 0.012
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHH 75
R ++L G GK+ + + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSV 26
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 31.4 bits (71), Expect = 0.013
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+ L+GP GKT +A+A+AH
Sbjct: 107 IWLFGPATTGKTNIAEAIAH 126
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 31.5 bits (71), Expect = 0.014
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHT 76
+LL G PG GKT L K +A +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKS 35
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 31.4 bits (70), Expect = 0.018
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 43 LYKQIGIDPPRGVLLYGPPGCGKTMLAKAV 72
+Y + + + K L V
Sbjct: 36 IYDSLMSSQNKLFYITNADDSTKFQLVNDV 65
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 31.0 bits (71), Expect = 0.024
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
+LL G PG KT+ +A
Sbjct: 49 ILLEGVPGLAKTLSVNTLA 67
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 30.6 bits (68), Expect = 0.030
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ P LLYG G GKT +A+ V
Sbjct: 42 EKPSNALLYGLTGTGKTAVARLVLRR 67
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 30.8 bits (69), Expect = 0.030
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHT 76
+L G PG GK+ A+
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKN 26
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 30.4 bits (68), Expect = 0.034
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 53 RGVLLYGPPGCGKTMLAKAVA 73
L+ G GK+ + K
Sbjct: 31 PITLVLGLRRTGKSSIIKIGI 51
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 30.3 bits (69), Expect = 0.034
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 57 LYGPPGCGKTMLAKAVAHH 75
L+GP G+T L A
Sbjct: 57 LWGPVKSGRTHLIHAACAR 75
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 30.4 bits (69), Expect = 0.036
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
++L GP C K+ +A ++
Sbjct: 4 IILEGPDCCFKSTVAAKLSKE 24
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 30.5 bits (68), Expect = 0.039
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 55 VLLYGPPGCGKT--MLAKAVAHHTTVLC 80
VL+ G PGCGKT +L++ +L
Sbjct: 164 VLVDGVPGCGKTKEILSRVNFEEDLILV 191
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 30.4 bits (67), Expect = 0.046
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHHT 76
+ P LL G PG GKT L A+ T
Sbjct: 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 30.2 bits (69), Expect = 0.047
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 50 DP--PRGVLLY-GPPGCGKTMLAKAVA 73
DP P G L+ GP G GKT LAK +A
Sbjct: 42 DPNRPIGSFLFLGPTGVGKTELAKTLA 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 30.2 bits (69), Expect = 0.049
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 50 DPPR--GVLLY-GPPGCGKTMLAKAVA 73
DP R G ++ GP G GKT LA+A+A
Sbjct: 516 DPKRPIGSFIFLGPTGVGKTELARALA 542
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 29.9 bits (68), Expect = 0.064
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 52 PRGVLLY-GPPGCGKTMLAKAVA 73
P G L+ GP G GKT + ++
Sbjct: 487 PVGSFLFAGPTGVGKTEVTVQLS 509
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 29.7 bits (67), Expect = 0.065
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+L G PG GK+ A+
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 29.7 bits (66), Expect = 0.066
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHH 75
V+ G G GKT L +
Sbjct: 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 29.6 bits (66), Expect = 0.067
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 31 REAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAV 72
+ A + + + V + GP G G T L K +
Sbjct: 31 KNAFNIVMK-------AIKEKKHHVTINGPAGTGATTLTKFI 65
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.8 bits (67), Expect = 0.069
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 53 RGVLLYGPPGCGKTMLAK 70
RG++L GPPG GKTM+
Sbjct: 1268 RGIILCGPPGSGKTMIMN 1285
Score = 29.4 bits (66), Expect = 0.085
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 52 PRG-VLLYGPPGCGKTMLAKAVAH 74
+G ++L G GKT+L + VA
Sbjct: 1608 VQGHMMLIGASRTGKTILTRFVAW 1631
Score = 29.4 bits (66), Expect = 0.10
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 54 GVLLYGPPGCGKT----MLAKA 71
++L G GCGKT + A
Sbjct: 925 ALILVGKAGCGKTATWKTVIDA 946
Score = 24.4 bits (53), Expect = 5.0
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 58 YGPPGCGKT----MLAKAVAHHTTVLC 80
+GP G GKT + + V
Sbjct: 651 FGPAGTGKTETVKAFGQNLGRVVVVFN 677
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 29.2 bits (65), Expect = 0.076
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+++ G PG GKT L K +
Sbjct: 3 IIITGEPGVGKTTLVKKIVER 23
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 29.2 bits (65), Expect = 0.091
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 40 HFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
D++K+ G + PG GK+ AK
Sbjct: 23 LVDIWKRGGDRTNSNWTILAKPGAGKSFTAK 53
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.092
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 24/53 (45%)
Query: 26 QKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTV 78
+KQ +++ ++ L K LY A A+A T+
Sbjct: 18 EKQALKK-LQASL------K-----------LYADDS------APALAIKATM 46
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 29.4 bits (66), Expect = 0.093
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 13/62 (20%)
Query: 18 SDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVL-LYGPPGCGKTMLAKAVAHHT 76
I++ L K G + ++G GCGK++LA
Sbjct: 124 VVFVTRKKLVNAIQQ---------KLSKL---KGEPGWVTIHGMAGCGKSVLAAEAVRDH 171
Query: 77 TV 78
++
Sbjct: 172 SL 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.096
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 15 VQYSDIGG------M----DMQKQEIREAVELPLTHFDLYKQIGI---DPPRGVLLYGPP 61
++ S M ++ ++++++ V +H KQ+ I + + +++ GPP
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.1 bits (66), Expect = 0.10
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 50 DP--PRGVLLY-GPPGCGKTMLAKAVA 73
DP P G L+ GP G GKT LAK +A
Sbjct: 583 DPNRPIGSFLFLGPTGVGKTELAKTLA 609
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 29.3 bits (65), Expect = 0.10
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 27 KQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAH 74
+ + ++L L +I + V+L G PG GK+ +A+ +
Sbjct: 5 HKLADDVLQL------LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46
Score = 27.3 bits (60), Expect = 0.40
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
+ G + AV
Sbjct: 122 TAVVARGGTANAIRIAAVD 140
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 29.1 bits (65), Expect = 0.11
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVLC 80
GI+ +G GKT L +H V
Sbjct: 118 GIESMAITEAFGEFRTGKTQL----SHTLCVTA 146
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 29.1 bits (66), Expect = 0.11
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 55 VLLYGPPGCGKTMLA 69
+YGP GKT LA
Sbjct: 23 TQVYGPYASGKTTLA 37
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 29.0 bits (65), Expect = 0.12
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
++ GP GK+ + H
Sbjct: 61 LVFCGPANTGKSYFGMSFIH 80
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.9 bits (64), Expect = 0.12
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
R V L GPPG GKT L +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEV 24
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain
III (ATPase domain), ATP-binding, cytoplasm, DNA
replication; HET: ADP; 3.00A {Thermotoga maritima} PDB:
2z4r_A*
Length = 440
Score = 28.8 bits (65), Expect = 0.14
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 56 LLYGPPGCGKTMLAKAVAHH 75
+YG G GKT L +++ ++
Sbjct: 134 FIYGGVGLGKTHLLQSIGNY 153
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 28.7 bits (64), Expect = 0.16
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 52 PRGVLLYGPPGCGKT 66
PR +L+ G G GK+
Sbjct: 53 PRHLLVNGATGTGKS 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 28.4 bits (64), Expect = 0.16
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVA 73
P+ +L+ GP G GKT +A+ +A
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLA 71
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 28.5 bits (64), Expect = 0.16
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 52 PRGVL--LYGPPGCGKTMLAKAVAHHTTVLC 80
+ +G G GKT L H +V
Sbjct: 105 ETRTMTEFFGEFGSGKTQL----CHQLSVNV 131
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+,
helix-turn-helix, nucleotide-binding, DNA binding, REP
initiation, DNA binding protein; HET: ADP; 2.70A
{Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB:
3r8f_A* 2hcb_A*
Length = 324
Score = 28.3 bits (64), Expect = 0.18
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 57 LYGPPGCGKTMLAKAVAHH 75
+YG G GKT L +A +
Sbjct: 42 IYGSVGTGKTHLLQAAGNE 60
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 28.1 bits (63), Expect = 0.21
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 8/29 (27%)
Query: 47 IGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+GID G GKT LA ++
Sbjct: 25 LGID--------GLSRSGKTTLANQLSQT 45
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 28.2 bits (62), Expect = 0.24
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 19 DIGGMDMQKQEIREAVELPL-----THFDL--YKQIGIDPPRGVLLYGPPGCGKTMLAKA 71
D+ I + HF L + + PR V++ G GKT L++
Sbjct: 99 LWKCPDLTTNTITVKPNHTMKYIYNLHFMLEKIRMSNFEGPR-VVIVGGSQTGKTSLSRT 157
Query: 72 VAHHTT 77
+ +
Sbjct: 158 LCSYAL 163
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 27.7 bits (62), Expect = 0.32
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
+ L G G GK+ K +A
Sbjct: 106 LGLVGTNGIGKSTALKILA 124
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 27.7 bits (60), Expect = 0.33
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 40 HFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+ + + G P + GP G GK+ + +
Sbjct: 19 YIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIY 52
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 27.6 bits (61), Expect = 0.33
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
+ + GP G GKT A +
Sbjct: 8 IWINGPFGVGKTHTAHTLH 26
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 27.5 bits (62), Expect = 0.34
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 42 DLYKQIG----IDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77
++ +++ P V L G G +A+ + T
Sbjct: 15 EMNREVEAAAKRTSP--VFLTGEAGSPFETVARYFHKNGT 52
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 27.7 bits (61), Expect = 0.35
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 56 LLYGPPGCGKTMLA 69
L+ G PG GKT+
Sbjct: 9 LITGTPGSGKTLKM 22
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 27.4 bits (62), Expect = 0.37
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 46 QIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
QI ID GP GK+ +AK +A
Sbjct: 18 QIAID--------GPASSGKSTVAKIIAKD 39
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 27.6 bits (60), Expect = 0.39
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 10/57 (17%)
Query: 22 GMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLY---GPPGCGKTMLAKAVAHH 75
+ + + L G ++Y G G GKT LAK
Sbjct: 26 VRRGEAEALARIYLNRLLS-------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 27.6 bits (62), Expect = 0.39
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 35 ELPLTHFDLYKQIGIDPPRGV-LLYGPPGCGKT 66
L ++ ++ P GV +YG G GKT
Sbjct: 8 ALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKT 40
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 27.4 bits (62), Expect = 0.40
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 46 QIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
I +D GP GK+ +AK VA
Sbjct: 5 NIALD--------GPAAAGKSTIAKRVASE 26
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 27.3 bits (61), Expect = 0.40
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 55 VLLYGP-PGCGKTMLAKAVAH 74
++L+ P PG GKT +AKA+ H
Sbjct: 50 IILHSPSPGTGKTTVAKALCH 70
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 27.3 bits (61), Expect = 0.42
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
V++ GP G GKT L +A++
Sbjct: 33 VIILGPNGSGKTTLLRAIS 51
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 27.6 bits (61), Expect = 0.43
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
L+ GPPG GKT+ + + +H
Sbjct: 378 SLIQGPPGTGKTVTSATIVYH 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 27.0 bits (61), Expect = 0.45
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 46 QIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ +D GP G GK+ +++ +A
Sbjct: 11 VVAVD--------GPAGTGKSSVSRGLARA 32
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 27.2 bits (61), Expect = 0.45
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAH 74
+ V L G G GKT L + +
Sbjct: 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55
Score = 24.5 bits (54), Expect = 4.1
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 32 EAVELPLTHFDLY 44
+ HFDLY
Sbjct: 75 NIAGKMIYHFDLY 87
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 27.2 bits (61), Expect = 0.47
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAH 74
RG L+ PP GKTML + +A
Sbjct: 176 RG-LIVAPPKAGKTMLLQNIAQ 196
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 27.1 bits (61), Expect = 0.48
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 55 VLLYGPPGCGKTMLAKAV 72
V LYG PG G+ A+ +
Sbjct: 27 VWLYGAPGTGRMTGARYL 44
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 27.4 bits (61), Expect = 0.49
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 16/51 (31%)
Query: 24 DMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAH 74
+ Q + + L V+L G PG GK+ KAVA
Sbjct: 192 EEQASVLDQLAGHRL----------------VVLTGGPGTGKSTTTKAVAD 226
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 27.3 bits (61), Expect = 0.52
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 41 FDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAH 74
F LY+ + V + GP G GK+ K +A
Sbjct: 36 FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG 69
Score = 23.8 bits (52), Expect = 7.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 59 GPPGCGKTMLAKAVA 73
GP G GKT K +A
Sbjct: 319 GPNGIGKTTFVKMLA 333
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 27.2 bits (61), Expect = 0.52
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAH 74
RG ++ PP GKT + K +A+
Sbjct: 177 RG-MIVAPPKAGKTTILKEIAN 197
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 27.0 bits (59), Expect = 0.52
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 53 RGVLLYGPPGCGKTMLA 69
GVL+ G GK+ L+
Sbjct: 17 MGVLITGEANIGKSELS 33
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 27.1 bits (60), Expect = 0.55
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
L+ GPPG GKT+ + + +H
Sbjct: 196 PLSLIQGPPGTGKTVTSATIVYH 218
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 27.0 bits (60), Expect = 0.59
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
+ V L G PG GK+ L+ +A
Sbjct: 22 RQLVALSGAPGSGKSTLSNPLAAA 45
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 26.8 bits (60), Expect = 0.61
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
+ + G GCG T + + +A
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARA 25
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 27.0 bits (59), Expect = 0.63
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 59 GPPGCGKTMLAKAVAHH 75
G G ++ K +A
Sbjct: 21 REYGSGGRIVGKKLAEE 37
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 26.6 bits (60), Expect = 0.71
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 47 IGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
I ID GP G GK L KA+A
Sbjct: 8 ITID--------GPSGAGKGTLCKAMAEA 28
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 26.5 bits (58), Expect = 0.73
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 53 RGVLLYGPPGCGKTMLA 69
GVL+ G G GK+ A
Sbjct: 35 LGVLITGDSGVGKSETA 51
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 26.8 bits (59), Expect = 0.74
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHH 75
+ ++L G G GK+ L+ +A H
Sbjct: 39 KEKLLVLMGATGTGKSRLSIDLAAH 63
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 26.9 bits (59), Expect = 0.74
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 17/63 (26%)
Query: 28 QEIREAVELPLTH----------------FDLYKQIGIDPPRGVLLYGPPGCGKTMLAKA 71
+E+ E + LPL+ + + P + + G GK+ ++
Sbjct: 53 KEVTE-IYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRV 111
Query: 72 VAH 74
+
Sbjct: 112 LKA 114
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 26.8 bits (59), Expect = 0.79
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
L+ GPPG GKT+ + + +H
Sbjct: 374 SLIQGPPGTGKTVTSATIVYH 394
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 26.5 bits (59), Expect = 0.79
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
+ + G G GKT + K +A
Sbjct: 28 LGVLGKNGVGKTTVLKILA 46
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 26.7 bits (60), Expect = 0.81
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
P+ + L GP GKT LA +
Sbjct: 10 PKAIFLMGPTASGKTALAIELRKI 33
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 26.4 bits (59), Expect = 0.81
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 5/19 (26%)
Query: 55 VLLYGPPGCGKT----MLA 69
V+L GP G GKT ++A
Sbjct: 30 VIL-GPTGAGKTLFLELIA 47
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 26.2 bits (59), Expect = 0.83
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 47 IGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ ID GP GK+ +A+ VA
Sbjct: 5 VTID--------GPSASGKSSVARRVAAA 25
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 26.5 bits (58), Expect = 0.83
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVLC 80
GI+ ++G G GKT L AH V+
Sbjct: 127 GIETQAITEVFGEFGSGKTQL----AHTLAVMV 155
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 26.2 bits (58), Expect = 0.85
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 36 LPLTHFDLYKQIGIDPPRGV-LLYGPPGCGKTMLAKAV 72
+ + +F + ++ G+ L+ G G GK+ L A+
Sbjct: 6 VTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 26.3 bits (59), Expect = 0.86
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHH 75
R + L GP G GK+ + + +A
Sbjct: 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 26.3 bits (59), Expect = 0.87
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
P + L GP GKT LA A+A
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADA 28
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 26.0 bits (58), Expect = 1.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
+L G PG GK+ + + +A
Sbjct: 3 PKAVLVGLPGSGKSTIGRRLAKA 25
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 26.0 bits (58), Expect = 1.2
Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 50 DPPRGVLLYGPPGCGK 65
DP + ++ G P GK
Sbjct: 4 DPLKVMIS-GAPASGK 18
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 26.2 bits (57), Expect = 1.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 47 IGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+ + R + GP GCGK+ L +A+A
Sbjct: 456 LRLKRARRYGICGPNGCGKSTLMRAIA 482
Score = 24.2 bits (52), Expect = 7.1
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 47 IGIDPPRGVLLYGPPGCGKTMLAKAVA 73
+ + GP G GK+ L +
Sbjct: 694 FQCSLSSRIAVIGPNGAGKSTLINVLT 720
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 26.1 bits (58), Expect = 1.4
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 51 PPRG--VLLYGPPGCGKTMLAKAVA 73
G V + GP G GKT K +A
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILA 138
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 26.0 bits (57), Expect = 1.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+L+ G PG GK+ AK +
Sbjct: 4 ILITGMPGSGKSEFAKLLKER 24
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 26.0 bits (57), Expect = 1.4
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 48 GIDPPRG---VLLYGPPGCGKTMLAKAVAH 74
+ VLL G P +L + H
Sbjct: 232 CVGKNSERLHVLLAGYPVVCSEILHHVLDH 261
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 26.0 bits (58), Expect = 1.5
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 56 LLYGPPGCGKTMLAKAVA 73
++ G GCGKT L + +A
Sbjct: 35 II-GASGCGKTTLLRCLA 51
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 25.7 bits (57), Expect = 1.5
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 57 LYGPPGCGKT----MLA 69
L GP G GKT ++A
Sbjct: 46 LLGPSGSGKTTILRLIA 62
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 25.8 bits (56), Expect = 1.6
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
V++ G PG G T ++
Sbjct: 6 VVVTGVPGVGSTTSSQLAM 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein;
membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP:
c.37.1.12
Length = 240
Score = 25.6 bits (57), Expect = 1.7
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 57 LYGPPGCGKT----MLA 69
L GP G GK+ ++A
Sbjct: 29 LLGPTGAGKSVFLELIA 45
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 25.6 bits (57), Expect = 1.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 57 LYGPPGCGKTMLAKAVAHH 75
L G G GK+ LA+ +
Sbjct: 12 LIGFMGSGKSSLAQELGLA 30
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 25.7 bits (57), Expect = 1.8
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 55 VLLYGPPGCGKT----MLA 69
+ GP G GKT ++A
Sbjct: 34 FGILGPSGAGKTTFMRIIA 52
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 25.2 bits (56), Expect = 1.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 57 LYGPPGCGKTMLAKAVA 73
G G GK+ LA+A+A
Sbjct: 9 FIGFMGSGKSTLARALA 25
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 25.2 bits (56), Expect = 2.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 59 GPPGCGKTMLAKAVA 73
GP G GKT LA A A
Sbjct: 29 GPAGSGKTYLAMAKA 43
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 25.2 bits (56), Expect = 2.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ L G G GKT + +A
Sbjct: 8 IYLIGLMGAGKTSVGSQLAKL 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 25.2 bits (56), Expect = 2.2
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 43 LYKQIGIDPPRGVL--LYGPPGCGKTMLAKAVA 73
L++Q+ D +G + + G GCGK+ L +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL 52
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 25.4 bits (55), Expect = 2.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 53 RGVLLYGPPGCGKTMLA 69
GVL+ G G GK+ A
Sbjct: 145 VGVLITGDSGIGKSETA 161
>3io5_A Recombination and repair protein; storage dimer, inactive
conformation, RECA like core domain, binding, DNA
damage, DNA recombination; 2.40A {Enterobacteria phage
T4}
Length = 333
Score = 25.1 bits (55), Expect = 2.3
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 52 PRG-VLLYGPPGCGKTMLA 69
G ++L GP K+
Sbjct: 27 QSGLLILAGPSKSFKSNFG 45
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 25.2 bits (56), Expect = 2.3
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 52 PRGVLLYGPPGCGK 65
P V + G PG GK
Sbjct: 6 PNVVFVLGGPGSGK 19
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 25.3 bits (55), Expect = 2.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+LL G G GK+ + +
Sbjct: 6 LLLMGRSGSGKSSMRSIIFS 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 25.3 bits (56), Expect = 2.5
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
Query: 55 VLLYGPPGCGKT----MLA 69
++L GP GCGKT M+A
Sbjct: 40 LVLLGPSGCGKTTTLRMIA 58
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 25.3 bits (56), Expect = 2.5
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
Query: 55 VLLYGPPGCGKT----MLA 69
++L GP GCGKT M+A
Sbjct: 32 MILLGPSGCGKTTTLRMIA 50
>2it1_A 362AA long hypothetical maltose/maltodextrin transport
ATP-binding protein; structural genomics, NPPSFA; 1.94A
{Pyrococcus horikoshii}
Length = 362
Score = 25.2 bits (56), Expect = 2.5
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 55 VLLYGPPGCGKT----MLA 69
+ L GP G GK+ +A
Sbjct: 32 MALLGPSGSGKSTLLYTIA 50
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 24.9 bits (55), Expect = 2.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 57 LYGPPGCGKTMLAKAVAHH 75
L G G GKT L KA A
Sbjct: 30 LTGYMGAGKTTLGKAFARK 48
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase;
HET: AMP; 2.3A {Homo sapiens}
Length = 199
Score = 25.2 bits (56), Expect = 2.6
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 52 PRGVLLYGPPGCGK 65
+ + + G PG GK
Sbjct: 12 CKIIFIIGGPGSGK 25
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 24.8 bits (55), Expect = 2.7
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 52 PRGVLLYGPPGCGK 65
P V + G PG GK
Sbjct: 3 PLVVFVLGGPGAGK 16
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 25.0 bits (54), Expect = 2.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
VLL G CGK+ + K V H
Sbjct: 2 VLLMGVRRCGKSSICKVVFH 21
>2jlq_A Serine protease subunit NS3; ribonucleoprotein,
nucleotide-binding, viral nucleoprotein, endoplasmic
reticulum, helicase, hydrolase; 1.67A {Dengue virus 4}
PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A*
2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Length = 451
Score = 25.2 bits (55), Expect = 2.8
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 55 VLLYGPPGCGKT 66
++ PG GKT
Sbjct: 22 TIMDLHPGAGKT 33
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 24.8 bits (55), Expect = 2.8
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 52 PRGVLLYGPPGCGK 65
+ + G PG GK
Sbjct: 9 TNIIFVVGGPGSGK 22
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 24.9 bits (55), Expect = 2.9
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 53 RGVL---LYGPPGCGKTML 68
G + + G G GKT+L
Sbjct: 28 SGTVAVNIMGAIGSGKTLL 46
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 24.8 bits (54), Expect = 3.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHT 76
L+YGP GKT +A +A T
Sbjct: 4 HLIYGPTCSGKTDMAIQIAQET 25
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 24.9 bits (55), Expect = 3.1
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 53 RGVL---LYGPPGCGKTML 68
GV+ G G GKT+L
Sbjct: 36 HGVVAFDFMGAIGSGKTLL 54
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 24.9 bits (54), Expect = 3.1
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 59 GPPGCGKTMLAKAVAHHT 76
G G GK+ ++ ++
Sbjct: 7 GTVGAGKSTISAEISKKL 24
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport,
alpha and beta proteins (A/B) TM0421, structural
genomics, NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 24.9 bits (55), Expect = 3.1
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
Query: 55 VLLYGPPGCGKT----MLA 69
V L GP GCGKT MLA
Sbjct: 32 VALLGPSGCGKTTTLLMLA 50
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B*
3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Length = 305
Score = 25.0 bits (55), Expect = 3.3
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 24 DMQKQEIREAVELPLT----HFDLYKQ 46
+ +EI ++E+P + F +KQ
Sbjct: 174 LLGPEEILLSIEIPYSREDEFFSAFKQ 200
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI,
MCSG, PRK04182 class ME structural genomics, protein
structure initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 24.6 bits (53), Expect = 3.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 59 GPPGCGKTMLAKAVAHHTTVLC 80
G G ++AK +A H +
Sbjct: 13 REFGSGGHLVAKKLAEHYNIPL 34
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 24.8 bits (55), Expect = 3.6
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ L G GK+ + ++
Sbjct: 3 IYLIGFMCSGKSTVGSLLSRS 23
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 24.5 bits (54), Expect = 3.7
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 55 VLLYGPPGCGK 65
+ + G PG GK
Sbjct: 18 IFVLGGPGAGK 28
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 24.5 bits (54), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 53 RGVL--LYGPPGCGKTMLAKAV 72
GV+ L P GCGKT +A +
Sbjct: 26 VGVILVLSSPSGCGKTTVANKL 47
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Length = 462
Score = 24.8 bits (54), Expect = 4.1
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 23 MDMQKQEIREAVELPLT--HFDLYKQ 46
D + E E+V LP + YK
Sbjct: 328 QDRRPGEFVESVTLPKSAPGLRCYKL 353
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54
activator, bacterial transcription, DIM transcription;
HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1
c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Length = 387
Score = 24.7 bits (55), Expect = 4.1
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
VL+ G G GK ++A+ + H
Sbjct: 163 VLITGESGVGKEVVARLI-HK 182
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 24.9 bits (53), Expect = 4.2
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 55 VLLYGPPGCGKTMLA--KAVAHHTTVLC 80
+ GP GKT A K + + V C
Sbjct: 158 IFHSGPTNSGKTYHAIQKYFSAKSGVYC 185
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 24.7 bits (53), Expect = 4.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
++ G PG GK+ + V
Sbjct: 4 GIVTGIPGVGKSTVLAKVK 22
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 24.6 bits (54), Expect = 4.5
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+++ G G GK+ L+ +A
Sbjct: 5 IVIAGTTGVGKSQLSIQLAQK 25
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics; 1.80A {Thermus thermophilus}
Length = 186
Score = 24.4 bits (54), Expect = 4.5
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 55 VLLYGPPGCGK 65
V+ GPPG GK
Sbjct: 7 VIFLGPPGAGK 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase;
HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 24.5 bits (53), Expect = 4.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
VL+ G PG GKT +A +A
Sbjct: 73 VLIAGQPGTGKTAIAMGMA 91
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 24.4 bits (54), Expect = 4.5
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 53 RGVL--LYGPPGCGKTMLAKAV 72
+G L + P G GK+ L +A+
Sbjct: 15 QGTLYIVSAPSGAGKSSLIQAL 36
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 24.4 bits (54), Expect = 4.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 55 VLLYGPPGCGK 65
VLL GPPG GK
Sbjct: 23 VLLLGPPGAGK 33
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 24.4 bits (53), Expect = 4.6
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVA 73
V + G G GKT ++ A A
Sbjct: 12 GKTTFVFIGGKGGVGKTTISAATA 35
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding,
cytoplasm, damage, DNA recombination, DNA repair,
DNA-binding; 1.95A {Thermotoga maritima}
Length = 356
Score = 24.6 bits (54), Expect = 4.7
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
PRG V ++G GKT LA
Sbjct: 59 PRGRIVEIFGQESSGKTTLA 78
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 24.2 bits (53), Expect = 4.7
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 55 VLLYGPPGCGK 65
+L++GP G GK
Sbjct: 3 ILIFGPNGSGK 13
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A*
1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E*
1hqy_E* 1ht1_E* 1ht2_E*
Length = 444
Score = 24.6 bits (54), Expect = 4.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 52 PRGVLLYGPPGCGKT 66
P+ +L+ GP G GKT
Sbjct: 50 PKNILMIGPTGVGKT 64
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants,
DNA-repair, ATP-binding, DNA DA recombination, DNA
repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium
smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A*
1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A
2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A*
2zrp_A* 2zre_A* ...
Length = 349
Score = 24.6 bits (54), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
PRG + +YGP GKT +A
Sbjct: 59 PRGRVIEIYGPESSGKTTVA 78
>3cmu_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 4.20A
{Escherichia coli}
Length = 2050
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 1079 PMGRIVEIYGPESSGKTTLT 1098
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 381 PMGRIVEIYGPESSGKTTLT 400
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 730 PMGRIVEIYGPESSGKTTLT 749
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 1425 PMGRIVEIYGPESSGKTTLT 1444
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 1773 PMGRIVEIYGPESSGKTTLT 1792
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 32 PMGRIVEIYGPESSGKTTLT 51
>3cmw_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 2.80A
{Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Length = 1706
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 381 PMGRIVEIYGPESSGKTTLT 400
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 1080 PMGRIVEIYGPESSGKTTLT 1099
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 730 PMGRIVEIYGPESSGKTTLT 749
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 1429 PMGRIVEIYGPESSGKTTLT 1448
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 32 PMGRIVEIYGPESSGKTTLT 51
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 24.3 bits (52), Expect = 4.9
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 59 GPPGCGKTMLAKAVAHH 75
G G GKT +
Sbjct: 27 GNIGSGKTTYLNHFEKY 43
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase,
DNA repair, DNA binding protein; 1.90A {Escherichia
coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A
1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Length = 356
Score = 24.2 bits (53), Expect = 5.0
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
P G V +YGP GKT L
Sbjct: 61 PMGRIVEIYGPESSGKTTLT 80
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 24.3 bits (52), Expect = 5.0
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
PR + + G GK+ K +
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKT 25
>1xp8_A RECA protein, recombinase A; recombination, radioresistance,
DNA-repair, ATPase, DNA-BIND protein, DNA binding
protein; HET: AGS; 2.50A {Deinococcus radiodurans}
SCOP: c.37.1.11 d.48.1.1
Length = 366
Score = 24.3 bits (53), Expect = 5.0
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 52 PRG--VLLYGPPGCGKTMLA 69
PRG +YGP GKT LA
Sbjct: 72 PRGRITEIYGPESGGKTTLA 91
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 24.1 bits (53), Expect = 5.3
Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 55 VLLYGPPGCGK--TML 68
VL YGP G GK TML
Sbjct: 102 VLAYGPTGAGKTHTML 117
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 24.3 bits (53), Expect = 5.4
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 20 IGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYG 59
G D +I E ++ +T + IG D + + L G
Sbjct: 301 AGDPDTVVDKIEELLKAGVTQVVVGSPIGPDKEKAIELVG 340
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 24.1 bits (53), Expect = 5.6
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 49 IDPPRG-VLLYGPPGCGK-TMLA 69
G +L+ GP G GK T +A
Sbjct: 21 CHRKMGLILVTGPTGSGKSTTIA 43
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two
component system, AAA domain, NTRC family, DNA-binding;
HET: ATP; 3.0A {Salmonella typhimurium}
Length = 304
Score = 23.9 bits (53), Expect = 5.9
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
VL++G G GK ++A+A+ H
Sbjct: 28 VLIHGDSGTGKELVARAL-HA 47
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 23.9 bits (52), Expect = 5.9
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 55 VLLYGPPGCGKT 66
++ YGP GKT
Sbjct: 17 IVYYGPGLSGKT 28
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 24.0 bits (53), Expect = 6.0
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 53 RGVL--LYGPPGCGKTMLAKAV 72
+ L + P G GKT L +A+
Sbjct: 6 KANLFIISAPSGAGKTSLVRAL 27
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 24.1 bits (53), Expect = 6.1
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 49 IDPPRG-VLLYGPPGCGK-TMLA 69
G +L+ GP G GK T +A
Sbjct: 132 CHRKMGLILVTGPTGSGKSTTIA 154
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 24.1 bits (53), Expect = 6.3
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 31 REAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGK 65
+ + L +LY Q ++ GPPG GK
Sbjct: 6 HHSSGVDLGTENLYFQSMASKLLRAVILGPPGSGK 40
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer,
lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB:
2fah_A* 2qzy_A*
Length = 608
Score = 24.3 bits (52), Expect = 6.5
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 47 IGIDPPRGVLLY----GPPGCGKTMLA 69
+G+ P G Y P CGKT LA
Sbjct: 254 LGVTSPSGEKRYMAAAFPSACGKTNLA 280
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A*
2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A*
1zip_A* 1s3g_A*
Length = 216
Score = 24.0 bits (53), Expect = 6.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 55 VLLYGPPGCGK 65
++L G PG GK
Sbjct: 3 LVLMGLPGAGK 13
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 24.0 bits (53), Expect = 6.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 55 VLLYGPPGCGK 65
++L GPPG GK
Sbjct: 7 MVLIGPPGAGK 17
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 23.9 bits (52), Expect = 6.9
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 11/37 (29%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAH----------HTTVL 79
RG ++ P G GKT +A A + T L
Sbjct: 110 RGCIV-LPTGSGKTHVAMAAINELSTPTLIVVPTLAL 145
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 23.9 bits (52), Expect = 7.1
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 57 LYGPPGCGKTMLAKAVAHH 75
+ GP G GK++ +++A
Sbjct: 226 IPGPFGSGKSVTQQSLAKW 244
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 23.7 bits (52), Expect = 7.1
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 55 VLLYGPPGCGK 65
++L G PG GK
Sbjct: 3 IVLMGLPGAGK 13
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 23.7 bits (52), Expect = 7.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 57 LYGPPGCGKTMLAKAVA 73
L GP G GK+ L +A
Sbjct: 31 LVGPNGAGKSTLLARMA 47
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 23.7 bits (52), Expect = 7.3
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 49 IDPPRG-VLLYGPPGCGK-TMLA 69
D PRG VL+ GP G GK T LA
Sbjct: 119 SDVPRGLVLVTGPTGSGKSTTLA 141
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 23.9 bits (52), Expect = 7.4
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 16/46 (34%)
Query: 21 GGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKT 66
++ QK A + LT R ++ G PG GKT
Sbjct: 149 DEINWQK----VAAAVALTR------------RISVISGGPGTGKT 178
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 23.7 bits (52), Expect = 7.5
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 55 VLLYGPPGCGK 65
+ G PG GK
Sbjct: 32 YIFLGAPGSGK 42
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication,
DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 24.0 bits (51), Expect = 7.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
L+ P G GKT++A +A +
Sbjct: 26 CLIVLPTGLGKTLIAMMIAEY 46
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 23.6 bits (52), Expect = 7.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 55 VLLYGPPGCGK 65
++L G PG GK
Sbjct: 8 LILIGAPGSGK 18
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 23.7 bits (52), Expect = 7.9
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 55 VLLYGPPGCGK 65
++ GPPG GK
Sbjct: 3 LVFLGPPGAGK 13
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 23.7 bits (52), Expect = 8.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 55 VLLYGPPGCGK 65
+L GPPG GK
Sbjct: 19 AVLLGPPGAGK 29
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 23.6 bits (52), Expect = 8.1
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
+ V + GP GKT + +A
Sbjct: 3 EKLVAIVGPTAVGKTKTSVMLAKR 26
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+
ATPase, response regulator, transcriptional activator,
ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB:
1zit_A 2jrl_A
Length = 368
Score = 23.6 bits (52), Expect = 8.3
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
VL+ G G GK ++A+ + H
Sbjct: 155 VLITGESGTGKEIVARLI-HR 174
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 23.8 bits (52), Expect = 8.4
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 53 RG---VLLYGPPGCGKTMLAKAVAH 74
RG +L+ G PG K+ + + ++
Sbjct: 325 RGDIHILIIGDPGTAKSQMLQFISR 349
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 23.6 bits (51), Expect = 8.8
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 55 VLLYGPPGCGKT 66
+L PG GKT
Sbjct: 11 TVLDFHPGAGKT 22
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous
recombination, breast cancer susceptibility, RECA-like
ATPase, protein complex; HET: DNA MSE; 1.70A {Homo
sapiens} SCOP: c.37.1.11
Length = 243
Score = 23.6 bits (51), Expect = 8.8
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVLC 80
GI+ ++G GKT + H V C
Sbjct: 20 GIETGSITEMFGEFRTGKTQI----CHTLAVTC 48
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 23.7 bits (52), Expect = 9.0
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 55 VLLYGPPGCGK 65
++ G PG GK
Sbjct: 10 AVIMGAPGSGK 20
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 23.7 bits (52), Expect = 9.0
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 40 HFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKA 71
H + + + ++L G G G++ + A
Sbjct: 7 HSSGRENLYFQGRKTLVLIGASGVGRSHIKNA 38
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 23.6 bits (51), Expect = 9.1
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+++ P G GKT +A +A
Sbjct: 51 IIICLPTGSGKTRVAVYIAKD 71
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5;
1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB:
1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 23.7 bits (52), Expect = 9.2
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 55 VLLYGPPGCGK 65
++L G P GK
Sbjct: 3 IILLGAPVAGK 13
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 23.3 bits (51), Expect = 9.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 55 VLLYGPPGCGK 65
++L G PG GK
Sbjct: 11 LILLGAPGAGK 21
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 23.6 bits (51), Expect = 9.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ GP G GKT+ +A
Sbjct: 230 AAIPGPAGSGKTVTQHQLAKW 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.428
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,296,641
Number of extensions: 65716
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 266
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)