RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6772
(80 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 99.2 bits (247), Expect = 4e-28
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 11 EKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
E P V + D+ G + K+E++E VE L + + ++G P+GVLL GPPG GKT LA+
Sbjct: 2 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 60
Query: 71 AVAHHTTV 78
AVA V
Sbjct: 61 AVAGEARV 68
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 97.2 bits (242), Expect = 3e-27
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 9 NDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTML 68
+++ ++D+ G D K+E+ E VE L ++++G P+GVL+ GPPG GKT+L
Sbjct: 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLL 61
Query: 69 AKAVAHHTTV 78
AKA+A V
Sbjct: 62 AKAIAGEAKV 71
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 258
Score = 95.5 bits (236), Expect = 2e-26
Identities = 37/62 (59%), Positives = 47/62 (75%)
Query: 15 VQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAH 74
V Y D+GG Q +I+E VELPL H L+K IG+ PPRG+LLYGPPG GKT++A+AVA+
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 75 HT 76
T
Sbjct: 61 ET 62
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 265
Score = 91.4 bits (226), Expect = 5e-25
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAV 72
P V + DIGG++ K+E++E V+ P+ H D + + G+ P +GVL YGPPGCGKT+LAKA+
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
Query: 73 AHHTTV 78
A+
Sbjct: 62 ANECQA 67
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 60.3 bits (145), Expect = 2e-13
Identities = 15/61 (24%), Positives = 22/61 (36%)
Query: 20 IGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTTVL 79
+ G+ + ++ K P VLL GPP GKT LA +A +
Sbjct: 8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 67
Query: 80 C 80
Sbjct: 68 F 68
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 55.4 bits (133), Expect = 2e-11
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 5 KPTKNDEKPDVQYSDIGGMDMQKQEIREA--VELPLTHFDLYKQIGIDPPRGVLL-YGPP 61
D V + G M + EL + + G G+++ G
Sbjct: 73 SVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKG 132
Query: 62 GCGKTMLAKAVAH 74
GKT L A+
Sbjct: 133 NSGKTPLVHALGE 145
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 55.0 bits (131), Expect = 3e-11
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 15 VQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAH 74
V ++D + + E ++ ++ P LL G PG GKT L A+
Sbjct: 4 VNFTDKQFENRLNDNLEELIQGKK---------AVESPTAFLLGGQPGSGKTSLRSAIFE 54
Query: 75 HTTV 78
T
Sbjct: 55 ETQG 58
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 52.4 bits (125), Expect = 3e-10
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 5/71 (7%)
Query: 6 PTKNDEKPDVQYSDI-GGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCG 64
++ + ++ V L I R L GP G
Sbjct: 111 FGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCM----VYNIPKKRYWLFKGPIDSG 166
Query: 65 KTMLAKAVAHH 75
KT LA A+
Sbjct: 167 KTTLAAALLEL 177
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 51.7 bits (122), Expect = 3e-10
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 17 YSDIGGMDMQKQEIREAVELPLTH----FDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAV 72
+ G +++ + F + G R +LYGPPG GKT A V
Sbjct: 13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 72
Query: 73 AHHTTVLC 80
A
Sbjct: 73 AQELGYDI 80
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 51.0 bits (121), Expect = 6e-10
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 22 GMDMQKQEIREAVELPLTHFDLYKQIGID-PPRGVLLYGPPGCGKTMLAKAVAHHTTVLC 80
G K+ + A+ L + + + P+ +L+ GP G GKT +A+ +A
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 50.0 bits (118), Expect = 1e-09
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 18 SDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHHTT 77
+ G + KQ++R +E + +P +LL+GPPG GKT LA +AH
Sbjct: 9 DEYIGQERLKQKLRVYLEAA--------KARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 60
Query: 78 V 78
V
Sbjct: 61 V 61
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 44.0 bits (102), Expect = 2e-07
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAV 72
P + + Q Q++ + L + L G PG GKT+ + +
Sbjct: 11 PSYVPKRLPHREQQLQQLDILLGNWLRN-------PGHHYPRATLLGRPGTGKTVTLRKL 63
Query: 73 AHH 75
Sbjct: 64 WEL 66
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 43.0 bits (100), Expect = 5e-07
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 18 SDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ G + K+++ A+E ++ + VLL GPPG GKT LA +A
Sbjct: 9 DEFIGQENVKKKLSLALEAA--------KMRGEVLDHVLLAGPPGLGKTTLAHIIASE 58
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 42.2 bits (98), Expect = 9e-07
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 12 KPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKA 71
+P +S I G + K + P GVL++G G GK+ +A
Sbjct: 1 RPVFPFSAIVGQEDMKLALLLTAVDPGIG-------------GVLVFGDRGTGKSTAVRA 47
Query: 72 VA 73
+A
Sbjct: 48 LA 49
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 40.5 bits (93), Expect = 4e-06
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 4/63 (6%)
Query: 13 PDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAV 72
+ ++ + + + L D G G GKT LAK
Sbjct: 11 ENYIPPELRVRRGEAEALARIYLNRLLS----GAGLSDVNMIYGSIGRVGIGKTTLAKFT 66
Query: 73 AHH 75
Sbjct: 67 VKR 69
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 39.4 bits (91), Expect = 9e-06
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVA 73
P+ +L+ GP G GKT +A+ +A
Sbjct: 49 PKNILMIGPTGVGKTEIARRLA 70
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 37.1 bits (85), Expect = 6e-05
Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 16 QYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ + + + + ++ + L+G G GK+++A
Sbjct: 18 KQMTCYIREYHVDRVIKKL----------DEMCDLDSFFLFLHGRAGSGKSVIASQALSK 67
Query: 76 TTVL 79
+ L
Sbjct: 68 SDQL 71
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 35.4 bits (80), Expect = 2e-04
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
R V L GPPG GKT L +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEV 24
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 35.1 bits (79), Expect = 3e-04
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAH 74
L+ G GK+ + K +
Sbjct: 30 PITLVLGLRRTGKSSIIKIGIN 51
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 35.0 bits (79), Expect = 4e-04
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 35 ELPLTHFDLYKQIGIDPPRGV-LLYGPPGCGKTMLAKAV 72
L L +++ + D V L G G GK+ A
Sbjct: 6 SLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAF 44
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.4 bits (77), Expect = 5e-04
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
GI+ ++G GKT + +A
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 34.2 bits (77), Expect = 6e-04
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+LL G PG GK+ +A+A+A+
Sbjct: 7 LLLSGHPGSGKSTIAEALANL 27
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 34.2 bits (77), Expect = 6e-04
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ L P G GK+MLA +A
Sbjct: 25 NMVAGTVGALVSPGGAGKSMLALQLAAQ 52
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 33.8 bits (76), Expect = 9e-04
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
G +L G G GKT+L +
Sbjct: 22 GFFKDSIILATGATGTGKTLLVSRFVEN 49
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 33.6 bits (75), Expect = 0.001
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 12/58 (20%)
Query: 18 SDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ + + ++ + D P +LLYGP G GK A+
Sbjct: 11 NALSHNEELTNFLKSLSDQ-----------PRDLP-HLLLYGPNGTGKKTRCMALLES 56
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 33.5 bits (75), Expect = 0.001
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
G++ G G GKT + +
Sbjct: 30 GLESQSVTEFAGVFGSGKTQIMHQSCVN 57
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 33.3 bits (75), Expect = 0.001
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHHT 76
P V+ G PG GK+ +
Sbjct: 12 PNPEVVVAVGFPGAGKSTFIQEHLVSA 38
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 33.1 bits (74), Expect = 0.001
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
R ++L G GK+ + + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSV 26
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 33.1 bits (74), Expect = 0.001
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+L G G GK+ +A VAH
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQ 29
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 33.2 bits (74), Expect = 0.001
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHHTTVLC 80
+L+ PG G L A++ +
Sbjct: 24 HHALLIQALPGMGDDALIYALSRYLLCQQ 52
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 33.0 bits (75), Expect = 0.001
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
VL+ G G GK ++A+ +
Sbjct: 26 VLITGESGVGKEVVARLIHKL 46
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 33.2 bits (74), Expect = 0.002
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
G++ L+G GK+ L +A
Sbjct: 30 GVETGSITELFGEFRTGKSQLCHTLAVT 57
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 33.1 bits (74), Expect = 0.002
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
GI+ ++G G GKT LA +A
Sbjct: 32 GIETQAITEVFGEFGSGKTQLAHTLAVM 59
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 32.7 bits (74), Expect = 0.002
Identities = 2/22 (9%), Positives = 8/22 (36%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHT 76
+L+ G ++ + +
Sbjct: 18 ILINGEDLSYPREVSLELPEYV 39
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 32.8 bits (73), Expect = 0.002
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 38 LTHFDLYKQIGIDPPRGV-LLYGPPGCGKTMLAKAVAH 74
+ +F + ++ G+ L+ G G GK+ L A+
Sbjct: 8 VKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILV 45
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.7 bits (73), Expect = 0.002
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
G+ R L+ G G GKT+ + ++
Sbjct: 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYN 49
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 32.4 bits (72), Expect = 0.002
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
GI+ +G GKT L+ +
Sbjct: 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 32.2 bits (72), Expect = 0.003
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHH 75
DP + V++ G P GK + +
Sbjct: 2 DPLK-VMISGAPASGKGTQCELIKTK 26
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 31.9 bits (71), Expect = 0.003
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 52 PRG--VLLYGPPGCGKTMLAKAVAHH 75
P+G +L+ G PG GKT +A+ +A
Sbjct: 3 PKGINILITGTPGTGKTSMAEMIAAE 28
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 31.7 bits (72), Expect = 0.004
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAH 74
++ GP GK+ + H
Sbjct: 54 NCLVFCGPANTGKSYFGMSFIH 75
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 31.9 bits (71), Expect = 0.004
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
++ GP G GK+ K +A
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQ 25
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 31.6 bits (70), Expect = 0.005
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
+ V + G GK++L +A
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAV 30
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 31.5 bits (70), Expect = 0.005
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+LL G PG GKT L K +A
Sbjct: 7 ILLTGTPGVGKTTLGKELASK 27
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 31.3 bits (70), Expect = 0.006
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHHTTV 78
+LL GP G GKT++A+ +A H +
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDI 94
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 31.2 bits (69), Expect = 0.006
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
V L G G GKT ++ A+ +
Sbjct: 22 VWLTGLSGAGKTTVSMALEEY 42
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 31.1 bits (69), Expect = 0.007
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 52 PRGV--LLYGPPGCGKTMLAKAVAHH 75
P+GV +L GPPG GK A +A +
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 31.1 bits (69), Expect = 0.008
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
P V + G PG GK +
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIVRD 29
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 30.8 bits (68), Expect = 0.010
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ L G GK +A+A+
Sbjct: 9 IFLTGYMNSGKDAIARALQVT 29
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 30.3 bits (67), Expect = 0.012
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
+++ G PG GKT L K +
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 30.5 bits (67), Expect = 0.013
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
R + L GP G GK+ + + +A
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQ 25
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 30.2 bits (67), Expect = 0.017
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ G PG GK ++ + H
Sbjct: 9 AAIMGAPGSGKGTVSSRITKH 29
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 29.9 bits (67), Expect = 0.018
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 7 TKNDEKPDVQYSDIGG-MDMQKQEIREAVELPLTHFDLYKQIGIDPPR--GVLLYGPPGC 63
D+ + I +++ + + A + + + L+GP
Sbjct: 62 VGQQPVEDISSNRIYKILELNGYDPQYAASV------FLGWATKKFGKRNTIWLFGPATT 115
Query: 64 GKTMLAKAVAH 74
GKT +A+A+AH
Sbjct: 116 GKTNIAEAIAH 126
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.9 bits (66), Expect = 0.018
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
V++ G PG G T ++ +
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDN 24
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 29.8 bits (65), Expect = 0.023
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 35 ELPLTHFDLYKQIGIDPPRGV-LLYGPPGCGKTMLAKAV 72
+ + +F + ++ G+ L+ G G GK+ L A+
Sbjct: 5 RVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 29.8 bits (66), Expect = 0.023
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 40 HFDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ + + G P + GP G GK+ + + +H
Sbjct: 15 YIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNH 50
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 29.5 bits (65), Expect = 0.025
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
+ + + G PG GK + +
Sbjct: 8 SKIIFVVGGPGSGKGTQCEKIVQK 31
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 29.6 bits (65), Expect = 0.026
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
P+ VL+ G PG GK+ + + +A
Sbjct: 2 PKAVLV-GLPGSGKSTIGRRLAKA 24
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 29.5 bits (65), Expect = 0.030
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
VLL GPPG GK A +A
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEK 23
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 29.3 bits (64), Expect = 0.031
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ + GP G GK L KA+A
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEA 26
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 29.1 bits (64), Expect = 0.031
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
++L G P GK A+ +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEK 23
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 29.2 bits (64), Expect = 0.031
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHH 75
P V + G PG GK +
Sbjct: 1 PLV-VFVLGGPGAGKGTQCARIVEK 24
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 29.4 bits (65), Expect = 0.033
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ L G GK+ LA + H
Sbjct: 27 IWLTGLSASGKSTLAVELEHQ 47
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 29.3 bits (64), Expect = 0.035
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 56 LLYGPPGCGKTMLAKAVAHH 75
L YGPPG GKT A+
Sbjct: 37 LFYGPPGTGKTSTILALTKE 56
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 29.2 bits (64), Expect = 0.037
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 59 GPPGCGKTMLAKAVAHH 75
GP GK+ +AK +A
Sbjct: 10 GPASSGKSTVAKIIAKD 26
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 29.2 bits (64), Expect = 0.040
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ + G GCG T + + +A
Sbjct: 5 IFMVGARGCGMTTVGRELARA 25
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 29.1 bits (64), Expect = 0.041
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
++L G PG GK A+ +
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAA 23
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.8 bits (63), Expect = 0.044
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
++ G PG GK+ + V
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEI 24
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.8 bits (63), Expect = 0.046
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
P +++ G P GKT ++K + +
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRY 25
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.9 bits (63), Expect = 0.046
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+L G PG GK+ A+
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 28.8 bits (63), Expect = 0.048
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
++L GPPG GK A +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQER 25
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.8 bits (63), Expect = 0.050
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ + G PG GK + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKD 31
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 28.4 bits (63), Expect = 0.063
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 47 IGIDPPRGVL-LYGPPGCGKTMLAKAVA 73
+ + R L GP G GK++ + +A
Sbjct: 18 VDFEMGRDYCVLLGPTGAGKSVFLELIA 45
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 28.4 bits (63), Expect = 0.067
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
GVLL G G GK+ A + +
Sbjct: 16 VGVLLTGRSGIGKSECALDLINK 38
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 28.3 bits (62), Expect = 0.068
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
++L G PG GK A +
Sbjct: 3 IVLMGLPGAGKGTQADRIVEK 23
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 28.3 bits (62), Expect = 0.070
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
+ ++ G G GK+ LA+A+A
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKD 23
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.3 bits (62), Expect = 0.074
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 55 VLLYGPPGCGKT------MLAKAVAHHTTVLC 80
++ PG GKT ++ +A+ L
Sbjct: 12 TIMDLHPGAGKTKRYLPAIVREAIKRGLRTLI 43
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.1 bits (61), Expect = 0.080
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 48 GIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
G +++ G GK+ + A
Sbjct: 31 GARGGEVIMVTSGSGMGKSTFVRQQALQ 58
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.9 bits (62), Expect = 0.081
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAHH 75
GVL+ G G GK+ A +
Sbjct: 15 LGVLITGDSGVGKSETALELVQR 37
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.1 bits (62), Expect = 0.081
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+L G PG GKT + + +A
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQ 65
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.0 bits (62), Expect = 0.098
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 53 RGVLLYGPPGCGKTMLA 69
GVL+ G G GK+ A
Sbjct: 16 VGVLITGDSGIGKSETA 32
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 27.6 bits (60), Expect = 0.13
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 53 RGVLLYGPPGCGKTMLAKAVA 73
R V+L GP G GK+ L K +
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLF 21
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 27.3 bits (60), Expect = 0.13
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTTVLC 80
V L G G GKT L + +
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQGIGHQG 61
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 27.6 bits (60), Expect = 0.14
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTT 77
+ G GKT L K +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALC 27
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 27.4 bits (61), Expect = 0.14
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73
++ + G ++L GP GCGKT + +A
Sbjct: 23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 53
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 27.4 bits (60), Expect = 0.15
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAHH 75
L G G GKT +A+ +A
Sbjct: 34 HHAYLFSGTRGVGKTSIARLLAKG 57
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.2 bits (59), Expect = 0.15
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 53 RGVLLYGPPGCGKTMLAKAVA 73
R +++ GP G GK+ L K +
Sbjct: 2 RPIVISGPSGTGKSTLLKKLF 22
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 27.4 bits (61), Expect = 0.16
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTT 77
+ L+G G GKT+L + ++
Sbjct: 71 IGLFGGAGVGKTVLIMELINNVA 93
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 27.2 bits (60), Expect = 0.20
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73
+++ ++ G ++L GP GCGKT + +A
Sbjct: 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIA 50
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 26.9 bits (59), Expect = 0.20
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTT 77
L+ PP GKTML + +A
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIA 68
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 26.8 bits (59), Expect = 0.22
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73
++I + +G V +GP G GKT L K ++
Sbjct: 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 48
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.0 bits (58), Expect = 0.23
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 8/29 (27%)
Query: 47 IGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+GID G GKT LA ++
Sbjct: 25 LGID--------GLSRSGKTTLANQLSQT 45
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.8 bits (58), Expect = 0.24
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVA 73
PR +L+ G G GK++L + +A
Sbjct: 50 PRHLLVNGATGTGKSVLLRELA 71
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.6 bits (58), Expect = 0.26
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73
+ + G ++ GP G GKT+ + +A
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIA 47
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.4 bits (58), Expect = 0.28
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73
K I +D G V+ GP GCGK+ L + +A
Sbjct: 17 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 47
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.6 bits (58), Expect = 0.29
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73
+ I+ G + GP G GKT + +A
Sbjct: 22 DNVNINIENGERFGILGPSGAGKTTFMRIIA 52
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 26.6 bits (58), Expect = 0.29
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 27 KQEIREAVELPLTHF----------------DLYKQIGIDPPRGVLLYGPPGCGKTMLAK 70
+E+ E + LPL+ G P + + G GK+ A+
Sbjct: 40 LEEVAE-IYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTAR 98
Query: 71 AVAHH 75
+
Sbjct: 99 VLQAL 103
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.5 bits (57), Expect = 0.34
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTT 77
V+ G G GKT L +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLE 25
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.5 bits (57), Expect = 0.35
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 53 RGVLLYGPPGCGKTML------AKAVAHHTTV 78
R VL G GKT+L + T++
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI 32
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 26.3 bits (58), Expect = 0.35
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73
K + + G + + G G GK+ + +
Sbjct: 19 KGVSLQARAGDVISIIGSSGSGKSTFLRCIN 49
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.4 bits (58), Expect = 0.36
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73
+ I + + GP G GK+ + +
Sbjct: 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 26.5 bits (58), Expect = 0.37
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 53 RGVLLYGPPGCGKTMLAKAVAH 74
LL G G GKT +A+ +A
Sbjct: 40 NNPLLVGESGVGKTAIAEGLAW 61
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 26.2 bits (56), Expect = 0.40
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 35 ELPLTHFDLYK-QIGIDPPRGV-LLYGPPGCGKTMLAKAVA 73
+L L F + I V + GP G GK+ + A+
Sbjct: 5 KLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIK 45
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 26.2 bits (57), Expect = 0.43
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHH 75
R VL+ G G GKT + +
Sbjct: 4 PKGRVVLVVGVNGVGKTTTIAKLGRY 29
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 26.1 bits (57), Expect = 0.44
Identities = 3/17 (17%), Positives = 5/17 (29%)
Query: 59 GPPGCGKTMLAKAVAHH 75
G G G + +
Sbjct: 11 GSSGAGTSTVKHTFDQI 27
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 26.0 bits (56), Expect = 0.45
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 59 GPPGCGKTMLAKAVAHH 75
G PG GK+ +A
Sbjct: 61 GTPGAGKSTFLEAFGML 77
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.9 bits (56), Expect = 0.48
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHH 75
+PP +++ G G GKT +A
Sbjct: 9 EPPFVIMVVGVNGTGKTTSCGKLAKM 34
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 26.0 bits (56), Expect = 0.49
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 59 GPPGCGKTMLAKAVAHH 75
G PG GK+ A+
Sbjct: 58 GVPGVGKSTTIDALGSL 74
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 25.7 bits (55), Expect = 0.61
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+L GPPG GKT A A+A
Sbjct: 48 LLFAGPPGVGKTTAALALARE 68
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 25.7 bits (55), Expect = 0.63
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ + G GK+ + +
Sbjct: 5 IGVSGGTASGKSSVCAKIVQL 25
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 25.8 bits (56), Expect = 0.63
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHH 75
P +L+ G G GKT +A
Sbjct: 7 KAPFVILMVGVNGVGKTTTIGKLARQ 32
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 25.7 bits (55), Expect = 0.64
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
V+L GP GK+ + + +
Sbjct: 5 VVLSGPSAVGKSTVVRCLR 23
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 25.7 bits (56), Expect = 0.64
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 52 PRGVLLY--GPPGCGKTMLAKAVAHH 75
P + +Y GP G GKT + +
Sbjct: 2 PTLLRVYIDGPHGMGKTTTTQLLVAL 27
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 25.6 bits (55), Expect = 0.69
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 53 RGVLLYGPPGCGKTMLAKAVA 73
+ ++L G G G+ + +
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLI 24
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 25.3 bits (55), Expect = 0.73
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73
K I + PRG V L G G GKT A+A
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIA 53
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 25.7 bits (55), Expect = 0.73
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 35 ELPLTHFDLY--KQIGIDPPRGV-LLYGPPGCGKTMLAKAVA 73
+L L F Y K++ I +G + G G GK+ + A+
Sbjct: 6 KLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAIL 47
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 25.6 bits (56), Expect = 0.74
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 55 VLLYGPPGCGKTMLAKAVA 73
V + GP G GK+ + +
Sbjct: 34 VSIMGPSGSGKSTMLNIIG 52
>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
smegmatis [TaxId: 1772]}
Length = 265
Score = 25.5 bits (54), Expect = 0.90
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAHHTTVLC 80
D P L+ G T+L +++
Sbjct: 1 DHPTAYLVLASQRSGSTLLVESLRATGVAGE 31
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.1 bits (54), Expect = 0.93
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHH 75
P ++L G G GK A +A+
Sbjct: 11 IPYVIMLVGVQGTGKATTAGKLAYF 35
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 25.3 bits (54), Expect = 0.97
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 50 DPPRGVLLYGPPGCGKTMLAKAVAH 74
+ P + G G GKT ++ A A
Sbjct: 6 NIPPYLFFTGKGGVGKTSISCATAI 30
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 25.0 bits (53), Expect = 1.00
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 55 VLLYGPPGCGKTMLA 69
+L PG GKT
Sbjct: 10 TVLDFHPGAGKTRRF 24
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 24.8 bits (53), Expect = 1.1
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 55 VLLYGPPGCGKT-MLAKAVAHH 75
L+ P G GK+ + A A
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQ 32
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 25.0 bits (54), Expect = 1.1
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 59 GPPGCGKTMLAKAVAHH 75
G G GKT A+ HH
Sbjct: 12 GAYGIGKTTAAEEFLHH 28
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 24.8 bits (53), Expect = 1.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 55 VLLYGPPGCGKTMLAKAV 72
++ P G GK+ L +A+
Sbjct: 5 YIVSAPSGAGKSSLIQAL 22
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 24.9 bits (54), Expect = 1.2
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 59 GPPGCGKTMLAKAVAHH 75
G G GK+ + +A
Sbjct: 13 GVYGIGKSTTGRVMASA 29
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 25.0 bits (53), Expect = 1.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHT 76
+++ G PG GKT +AH
Sbjct: 39 MIISGMPGIGKTTSVHCLAHEL 60
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 24.8 bits (54), Expect = 1.2
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 45 KQIGIDPPRG--VLLYGPPGCGKTMLAKAVA 73
+ + P G + G G GK+ L + V
Sbjct: 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 52
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 24.3 bits (52), Expect = 1.6
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 49 IDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ L G G GKT A +A +
Sbjct: 7 LKDRNLWFLVGLQGSGKTTTAAKLALY 33
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 24.7 bits (52), Expect = 1.8
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 55 VLLYGPPGCGKT-MLAKAVAH 74
L+ G GKT ++ +AH
Sbjct: 17 CLVLAGAGSGKTRVITNKIAH 37
>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
{Methylobacillus flagellatus [TaxId: 405]}
Length = 395
Score = 24.2 bits (52), Expect = 1.9
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTTVLC 80
+++ G G G ++ V+
Sbjct: 41 LVILGTKGFGAHLMNVRHERPCEVIA 66
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 24.2 bits (51), Expect = 2.1
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 55 VLLYGPPGCGKT-MLAKAVAH 74
+L+ G GKT +L +A+
Sbjct: 27 LLIMAGAGSGKTRVLTHRIAY 47
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 24.0 bits (51), Expect = 2.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 51 PPRGVLLYGPPGCGKTMLAKAVAHH 75
+ +YG G GKT L +A +
Sbjct: 35 LYNPIFIYGSVGTGKTHLLQAAGNE 59
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 24.2 bits (51), Expect = 2.1
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 52 PRGVLLYGPPGCGKTMLAKAVAH 74
P +++ GP GKT L +
Sbjct: 4 PS-IIIAGPQNSGKTSLLTLLTT 25
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
{Thermus thermophilus, strain hb27 [TaxId: 274]}
Length = 311
Score = 23.9 bits (51), Expect = 2.4
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 29 EIREAVELPLTHFDLYKQIGIDPPRGVLLYGP 60
E PL H L ++ G PR + G
Sbjct: 15 GPPEFSFPPLDHVALMEKNGWWEPRISQVSGS 46
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 23.8 bits (50), Expect = 2.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTTVLC 80
+LL G GKT L K +A
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHI 44
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of
F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 23.6 bits (51), Expect = 2.9
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 25 MQKQEIREAVELPLTHFDLYKQIGIDPPRG--VLLYGPPGCGKTMLAKAVAHH 75
+ + +RE ++ + D IG RG L+ G GKT +A +
Sbjct: 43 IPRISVREPMQTGIKAVDSLVPIG----RGQRELIIGDRQTGKTSIAIDTIIN 91
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 23.9 bits (50), Expect = 3.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 43 LYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+ K + +L YGPPG GKT A+A
Sbjct: 26 VRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 58
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 23.9 bits (50), Expect = 3.2
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 47 IGIDPPRGVLLYGPPGCGKTMLAKAV 72
+G + GP G GK+ + A+
Sbjct: 20 VGFGESNFTSIIGPNGSGKSNMMDAI 45
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 23.7 bits (50), Expect = 3.3
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 12/67 (17%)
Query: 5 KPTKNDEKPDVQYSDIGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCG 64
++ + + + + A + LT R ++ G PG G
Sbjct: 128 AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTR------------RISVISGGPGTG 175
Query: 65 KTMLAKA 71
KT
Sbjct: 176 KTTTVAK 182
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 23.9 bits (50), Expect = 3.3
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 41 FDLYKQIGIDPPRGVLLYGPPGCGKTMLAKAVAHH 75
+D I+ G ++ G GKT+ +
Sbjct: 68 WDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWT 102
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 347
Score = 23.9 bits (50), Expect = 3.3
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 20 IGGMDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYG 59
G D +I E ++ +T + IG D + + L G
Sbjct: 300 AGDPDTVVDKIEELLKAGVTQVVVGSPIGPDKEKAIELVG 339
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 23.4 bits (49), Expect = 4.3
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 23/61 (37%)
Query: 23 MDMQKQEI--------REAVELPLTHFDLYKQIGIDPPRGVLLYGPPGCGKT-MLAKAVA 73
M+ +++ +EAV +L+ G GKT +L +A
Sbjct: 1 MNFLSEQLLAHLNKEQQEAVRTTEGP--------------LLIMAGAGSGKTRVLTHRIA 46
Query: 74 H 74
+
Sbjct: 47 Y 47
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 23.1 bits (49), Expect = 4.7
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 55 VLLYGPPGCGKTMLAKAVAHH 75
+ G G GK+ L A+
Sbjct: 98 STMAGLSGVGKSSLLNAINPG 118
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 23.0 bits (48), Expect = 4.8
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTTV 78
V++ G GKT + + + V
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVV 41
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 23.1 bits (48), Expect = 5.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+L+ G G GKT + +
Sbjct: 8 ILILGLDGAGKTTILYRLQV 27
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 23.1 bits (49), Expect = 5.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 55 VLLYGPPGCGKTMLAKAVAHHTTVLC 80
+L+ G G GKT+ K V + +
Sbjct: 126 ILITGESGAGKTVNTKRVIQYFATIA 151
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 23.1 bits (48), Expect = 5.8
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
++ G GKT L +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKD 35
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 22.9 bits (48), Expect = 5.9
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 59 GPPGCGKTMLAKAVAHH 75
G GKT L +
Sbjct: 8 GYKHSGKTTLMEKWVAA 24
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 22.7 bits (47), Expect = 5.9
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 55 VLLYGPPGCGKTML 68
+L+ G GKT +
Sbjct: 5 LLMLGLDNAGKTTI 18
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 22.6 bits (47), Expect = 6.4
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 55 VLLYGPPGCGKTML 68
+L+ G GKT +
Sbjct: 15 ILMLGLDAAGKTTI 28
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 22.7 bits (47), Expect = 6.7
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+L+ G GKT + +
Sbjct: 3 ILMVGLDAAGKTTILYKLKL 22
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 22.6 bits (47), Expect = 7.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 55 VLLYGPPGCGKTML 68
+L+ G G GKT +
Sbjct: 20 ILILGLDGAGKTTI 33
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 22.3 bits (46), Expect = 8.7
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 55 VLLYGPPGCGKTMLAKAVAH 74
+L G GKT L + +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKN 22
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 22.5 bits (47), Expect = 9.6
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 44 YKQIGIDPPRGVLLYGPPGCGKTML 68
KQ ++ +L+ G G GK+
Sbjct: 25 LKQEDVNSLT-ILVMGKGGVGKSST 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.428
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 309,333
Number of extensions: 12360
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 156
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)