Query psy6774
Match_columns 140
No_of_seqs 161 out of 1099
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 18:03:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02354 copper ion binding / 100.0 1.4E-36 3E-41 256.2 10.6 121 3-128 77-199 (552)
2 PLN02168 copper ion binding / 100.0 2.2E-36 4.7E-41 254.5 11.3 122 3-128 76-198 (545)
3 PLN02191 L-ascorbate oxidase 100.0 2.9E-36 6.4E-41 255.4 11.4 126 2-131 73-200 (574)
4 PLN02835 oxidoreductase 100.0 3.6E-36 7.9E-41 253.2 11.2 122 3-128 79-201 (539)
5 PLN00044 multi-copper oxidase- 100.0 3.1E-36 6.8E-41 255.2 10.2 122 3-129 79-203 (596)
6 PLN02991 oxidoreductase 100.0 4.3E-36 9.2E-41 252.6 10.2 122 3-128 78-200 (543)
7 TIGR03388 ascorbase L-ascorbat 100.0 2E-35 4.4E-40 249.0 11.4 127 2-132 51-179 (541)
8 PLN02792 oxidoreductase 100.0 1.9E-35 4E-40 248.6 10.2 122 3-129 66-190 (536)
9 TIGR03390 ascorbOXfungal L-asc 100.0 3.5E-35 7.6E-40 247.4 11.6 124 1-131 57-184 (538)
10 TIGR03389 laccase laccase, pla 100.0 1.7E-34 3.7E-39 243.3 10.9 126 3-132 53-181 (539)
11 PLN02604 oxidoreductase 100.0 5.3E-34 1.2E-38 241.5 10.8 127 2-132 74-202 (566)
12 KOG1263|consensus 100.0 7.5E-34 1.6E-38 239.0 11.5 120 3-127 78-201 (563)
13 TIGR01480 copper_res_A copper- 100.0 5.3E-30 1.1E-34 217.4 10.6 93 3-103 95-187 (587)
14 PRK10965 multicopper oxidase; 100.0 4.2E-29 9E-34 209.9 12.4 124 3-133 96-228 (523)
15 PF07732 Cu-oxidase_3: Multico 100.0 7.1E-29 1.5E-33 171.9 5.6 71 3-73 45-116 (117)
16 PRK10883 FtsI repressor; Provi 99.9 4.7E-27 1E-31 195.5 12.8 123 3-133 96-225 (471)
17 TIGR02376 Cu_nitrite_red nitri 99.9 4E-24 8.7E-29 169.9 9.8 109 4-126 81-196 (311)
18 COG2132 SufI Putative multicop 99.9 2E-21 4.3E-26 161.0 12.6 121 6-135 86-207 (451)
19 TIGR03095 rusti_cyanin rusticy 99.6 1.3E-15 2.7E-20 109.5 6.1 66 6-71 77-148 (148)
20 TIGR01480 copper_res_A copper- 99.3 6.5E-12 1.4E-16 107.3 6.0 68 3-71 518-587 (587)
21 PF07731 Cu-oxidase_2: Multico 98.6 3.9E-08 8.5E-13 68.8 3.2 71 3-73 53-137 (138)
22 PF00394 Cu-oxidase: Multicopp 98.0 3.6E-06 7.9E-11 60.7 2.3 45 89-133 2-51 (159)
23 PF00127 Copper-bind: Copper b 97.8 3.6E-05 7.8E-10 51.4 4.9 37 31-71 63-99 (99)
24 TIGR02656 cyanin_plasto plasto 97.8 3.3E-05 7.2E-10 51.6 4.6 37 31-71 63-99 (99)
25 TIGR03389 laccase laccase, pla 97.3 0.00057 1.2E-08 58.4 6.4 70 4-73 438-522 (539)
26 PLN02835 oxidoreductase 97.3 0.00064 1.4E-08 58.2 6.4 70 4-73 431-514 (539)
27 TIGR03096 nitroso_cyanin nitro 97.1 0.00058 1.3E-08 48.3 3.4 29 29-57 93-121 (135)
28 PRK02710 plastocyanin; Provisi 97.0 0.0012 2.7E-08 45.5 4.6 37 31-71 83-119 (119)
29 COG2132 SufI Putative multicop 96.9 0.0017 3.6E-08 54.2 4.9 69 4-72 377-450 (451)
30 PLN02604 oxidoreductase 96.9 0.0021 4.7E-08 55.2 5.5 42 31-72 507-548 (566)
31 TIGR03388 ascorbase L-ascorbat 96.8 0.0019 4.1E-08 55.3 5.1 41 32-72 485-525 (541)
32 TIGR03390 ascorbOXfungal L-asc 96.7 0.0034 7.5E-08 53.7 5.7 40 34-73 495-534 (538)
33 TIGR03102 halo_cynanin halocya 96.5 0.0057 1.2E-07 42.2 4.8 36 32-71 80-115 (115)
34 TIGR02375 pseudoazurin pseudoa 96.4 0.0086 1.9E-07 41.3 4.9 36 34-73 54-89 (116)
35 PRK02888 nitrous-oxide reducta 96.4 0.0063 1.4E-07 52.8 5.1 43 31-73 592-635 (635)
36 PRK10965 multicopper oxidase; 96.2 0.0088 1.9E-07 51.1 5.4 66 4-71 447-523 (523)
37 PF06525 SoxE: Sulfocyanin (So 96.2 0.011 2.4E-07 44.3 4.9 44 31-74 146-189 (196)
38 PLN02792 oxidoreductase 96.1 0.019 4.1E-07 49.2 6.9 42 32-73 465-506 (536)
39 PLN02191 L-ascorbate oxidase 96.1 0.019 4E-07 49.6 6.8 39 32-70 508-546 (574)
40 PRK10883 FtsI repressor; Provi 96.1 0.0091 2E-07 50.4 4.6 68 5-73 394-470 (471)
41 PF13473 Cupredoxin_1: Cupredo 96.1 0.0067 1.5E-07 40.5 3.1 37 30-70 68-104 (104)
42 TIGR02657 amicyanin amicyanin. 95.8 0.036 7.8E-07 35.6 5.4 34 32-71 50-83 (83)
43 TIGR03094 sulfo_cyanin sulfocy 95.8 0.02 4.2E-07 42.5 4.6 42 32-73 146-187 (195)
44 KOG1263|consensus 95.6 0.037 8.1E-07 47.7 6.3 43 32-74 497-539 (563)
45 PLN00044 multi-copper oxidase- 95.5 0.03 6.5E-07 48.6 5.5 71 4-74 453-537 (596)
46 COG3794 PetE Plastocyanin [Ene 95.4 0.032 7E-07 39.2 4.4 36 33-72 93-128 (128)
47 PLN02168 copper ion binding / 95.3 0.038 8.2E-07 47.5 5.3 42 32-73 477-518 (545)
48 TIGR02376 Cu_nitrite_red nitri 95.2 0.043 9.2E-07 43.9 5.2 69 4-73 223-298 (311)
49 PLN02354 copper ion binding / 94.7 0.094 2E-06 45.2 6.2 42 32-73 480-521 (552)
50 PLN02991 oxidoreductase 93.7 0.19 4.1E-06 43.3 6.1 42 32-73 472-513 (543)
51 COG4454 Uncharacterized copper 91.5 0.52 1.1E-05 34.2 5.0 43 30-72 116-158 (158)
52 PF00116 COX2: Cytochrome C ox 81.5 4.2 9.2E-05 27.9 4.9 41 30-70 78-119 (120)
53 PRK10378 inactive ferrous ion 81.1 2.7 5.8E-05 34.7 4.3 39 30-73 80-118 (375)
54 COG1622 CyoA Heme/copper-type 79.9 5.1 0.00011 31.2 5.3 44 30-73 169-213 (247)
55 TIGR02695 azurin azurin. Azuri 79.0 3.7 8.1E-05 28.7 3.9 39 31-70 84-125 (125)
56 PF12690 BsuPI: Intracellular 68.8 5.3 0.00012 25.6 2.5 33 20-52 41-80 (82)
57 TIGR02866 CoxB cytochrome c ox 61.4 33 0.00072 25.5 5.9 44 30-73 149-193 (201)
58 PF04744 Monooxygenase_B: Mono 57.0 8.7 0.00019 31.7 2.2 48 20-67 71-120 (381)
59 PF00394 Cu-oxidase: Multicopp 55.2 22 0.00049 25.1 4.0 49 6-55 83-136 (159)
60 PF10989 DUF2808: Protein of u 54.0 18 0.00038 25.6 3.2 28 29-56 96-127 (146)
61 MTH00047 COX2 cytochrome c oxi 53.3 79 0.0017 23.6 6.7 41 33-73 151-192 (194)
62 cd00918 Der-p2_like Several gr 48.4 26 0.00056 24.1 3.2 23 21-44 65-87 (120)
63 cd02861 E_set_proteins_like E 45.4 27 0.00058 21.8 2.8 22 22-45 35-56 (82)
64 cd08058 MPN_euk_mb Mpr1p, Pad1 39.1 14 0.0003 25.0 0.7 6 51-56 70-75 (119)
65 cd00912 ML The ML (MD-2-relate 38.4 27 0.00059 23.7 2.1 16 29-44 79-94 (127)
66 PF02221 E1_DerP2_DerF2: ML do 37.5 25 0.00054 23.7 1.8 16 29-44 85-100 (134)
67 KOG1554|consensus 34.0 37 0.0008 27.3 2.4 27 49-75 134-175 (347)
68 cd00916 Npc2_like Niemann-Pick 32.1 41 0.0009 22.9 2.2 17 28-44 75-91 (123)
69 COG4263 NosZ Nitrous oxide red 31.8 33 0.00071 29.5 1.9 40 32-71 596-636 (637)
70 TIGR03079 CH4_NH3mon_ox_B meth 31.2 22 0.00047 29.4 0.8 48 20-67 91-140 (399)
71 MTH00129 COX2 cytochrome c oxi 30.7 1.3E+02 0.0029 22.9 5.0 42 32-73 174-216 (230)
72 KOG2853|consensus 30.1 93 0.002 26.1 4.2 41 30-70 340-384 (509)
73 PTZ00047 cytochrome c oxidase 28.6 1.6E+02 0.0035 21.5 4.9 42 32-73 107-149 (162)
74 cd08067 MPN_2A_DUB Mov34/MPN/P 28.2 26 0.00057 26.0 0.7 6 51-56 84-89 (187)
75 KOG4063|consensus 27.5 48 0.001 24.0 1.9 18 28-45 106-123 (158)
76 KOG1555|consensus 27.0 26 0.00056 28.3 0.5 26 49-74 118-158 (316)
77 smart00737 ML Domain involved 26.9 53 0.0012 21.8 2.0 16 29-44 71-86 (118)
78 PF05938 Self-incomp_S1: Plant 26.1 1.8E+02 0.0039 19.1 4.5 43 30-73 29-71 (110)
79 MTH00140 COX2 cytochrome c oxi 25.9 1.8E+02 0.0038 22.1 4.9 42 32-73 174-216 (228)
80 PF10290 DUF2403: Glycine-rich 25.8 40 0.00088 20.8 1.1 11 3-13 43-53 (65)
81 cd08068 MPN_BRCC36 Mov34/MPN/P 25.5 31 0.00066 26.9 0.7 7 50-56 93-99 (244)
82 MTH00098 COX2 cytochrome c oxi 25.2 1.2E+02 0.0026 23.1 3.9 40 33-72 175-215 (227)
83 cd00915 MD-1_MD-2 MD-1 and MD- 22.1 86 0.0019 22.0 2.3 17 28-44 81-99 (130)
84 PRK05461 apaG CO2+/MG2+ efflux 21.2 70 0.0015 22.3 1.7 13 29-41 73-85 (127)
85 TIGR01432 QOXA cytochrome aa3 20.3 1.4E+02 0.003 22.5 3.3 44 29-73 162-206 (217)
86 TIGR03000 plancto_dom_1 Planct 20.1 96 0.0021 19.7 2.0 16 29-44 33-48 (75)
87 COG2967 ApaG Uncharacterized p 20.0 68 0.0015 22.3 1.4 20 22-42 66-85 (126)
No 1
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.4e-36 Score=256.19 Aligned_cols=121 Identities=28% Similarity=0.475 Sum_probs=98.9
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEc-CCCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~-~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
+++|+||||||+|..++|+||+++ |||||+||++|+|+|++ +|+||||||||.+.|+.+||+|+|||+++... + .
T Consensus 77 ~~~ttiHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~-~--~ 152 (552)
T PLN02354 77 DEPFLLTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLI-P--V 152 (552)
T ss_pred CCCcccccccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCC-C--C
Confidence 578999999999999999999999 99999999999999998 58999999999999999999999999987422 2 1
Q ss_pred CCCCCCCceEEEEeeccccCCCccccCccc-CCCCCCCcEEEEecccc
Q psy6774 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLR-TNTGNFPETYLINGKNN 128 (140)
Q Consensus 82 ~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~-~~~~~~~d~~lING~~~ 128 (140)
+|+..++|++|+|+||++++..++. ..+. +.....+|++||||++.
T Consensus 153 p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~~~g~~~~~~d~~liNG~~~ 199 (552)
T PLN02354 153 PYADPEDDYTVLIGDWYTKSHTALK-KFLDSGRTLGRPDGVLINGKSG 199 (552)
T ss_pred CCCCcCceEEEEeeeeccCCHHHHH-HHHhcCCCCCCCCeEEEeCCcC
Confidence 2433234899999999998764422 2222 22345689999999964
No 2
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=2.2e-36 Score=254.52 Aligned_cols=122 Identities=27% Similarity=0.468 Sum_probs=98.1
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEc-CCCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~-~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
+++|+|||||++|.+++|+||+++ |||||+||++|+|+|++ +|+||||||||.+.|+.+||+|+|||++++.....
T Consensus 76 ~~~ttiHWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p-- 152 (545)
T PLN02168 76 TEPFLMTWNGLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVP-- 152 (545)
T ss_pred CCCccEeeCCccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcC--
Confidence 578999999999999999999999 99999999999999999 48999999999999999999999999987432211
Q ss_pred CCCCCCCceEEEEeeccccCCCccccCcccCCCCCCCcEEEEecccc
Q psy6774 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNN 128 (140)
Q Consensus 82 ~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~d~~lING~~~ 128 (140)
+...+.|++|+|+||++.+...+......+...+.+|++||||+++
T Consensus 153 -~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~ 198 (545)
T PLN02168 153 -FPKPDEEYDILIGDWFYADHTVMRASLDNGHSLPNPDGILFNGRGP 198 (545)
T ss_pred -cCcccceeeEEEEecCCCCHHHHHhhhhcCCCCCCCCEEEEeccCC
Confidence 2122237899999999976533222111122346899999999974
No 3
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=2.9e-36 Score=255.36 Aligned_cols=126 Identities=30% Similarity=0.583 Sum_probs=101.9
Q ss_pred CCCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 2 ~~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
.+++|+|||||+++.+++|+||++++|||||+||++|+|+|+++|+||||||||.+.|+.+||+|+|||+++.... .
T Consensus 73 ~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~-~-- 149 (574)
T PLN02191 73 TTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPK-E-- 149 (574)
T ss_pred CCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCC-C--
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998763221 1
Q ss_pred CCCCCCCceEEEEeeccccCCCccccCccc--CCCCCCCcEEEEeccccccc
Q psy6774 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLR--TNTGNFPETYLINGKNNYVY 131 (140)
Q Consensus 82 ~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~--~~~~~~~d~~lING~~~~~~ 131 (140)
.+.+|. |++|+|+||++.+..+....... .....++|++|||||+++.|
T Consensus 150 ~~~~d~-e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~ 200 (574)
T PLN02191 150 RLRYDG-EFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNC 200 (574)
T ss_pred CCCCCe-eEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCC
Confidence 233443 79999999999864332111111 11235789999999999876
No 4
>PLN02835 oxidoreductase
Probab=100.00 E-value=3.6e-36 Score=253.19 Aligned_cols=122 Identities=27% Similarity=0.460 Sum_probs=99.0
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEc-CCCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~-~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
+++|+||||||+|.+++|+||+++ |||||+||++|+|+|++ +|+||||||||.+.|+.+||+|+|||+++.+. +.
T Consensus 79 ~~~ttiHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~-~~-- 154 (539)
T PLN02835 79 DQPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRI-PI-- 154 (539)
T ss_pred CCCCcEEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCC-Cc--
Confidence 579999999999999999999999 99999999999999997 68999999999999999999999999865322 21
Q ss_pred CCCCCCCceEEEEeeccccCCCccccCcccCCCCCCCcEEEEecccc
Q psy6774 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNN 128 (140)
Q Consensus 82 ~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~d~~lING~~~ 128 (140)
++...++|++|+|+||++++..++......+...+++|++|||||..
T Consensus 155 p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~ 201 (539)
T PLN02835 155 PFPLPDGDFTLLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQTQ 201 (539)
T ss_pred CCCCCCceEEEEeeccccCCHHHHHHHhhcCCCCCCCceEEEccccC
Confidence 12222237999999999998644322222234457899999999965
No 5
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=255.19 Aligned_cols=122 Identities=28% Similarity=0.467 Sum_probs=99.8
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEc-CCCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~-~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
+++|+||||||+|..++|+||+++ |||||+||++|+|+|++ +|+||||||||++.|+.+||+|+|||++++.. +.
T Consensus 79 ~~~ttIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~-~~-- 154 (596)
T PLN00044 79 DEPLLLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVI-PI-- 154 (596)
T ss_pred CCCccEEECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccc-cc--
Confidence 579999999999999999999987 99999999999999999 58999999999999999999999999987432 21
Q ss_pred CCCC-CCCceEEEEeeccccCCCccccCccc-CCCCCCCcEEEEeccccc
Q psy6774 82 LWDY-DLPSHVIIITDWLHDMTDEKYPGFLR-TNTGNFPETYLINGKNNY 129 (140)
Q Consensus 82 ~~~~-d~~e~~l~l~Dw~~~~~~~~~~~~~~-~~~~~~~d~~lING~~~~ 129 (140)
+++. |++|++|+|+||++.+..++ ...+. +.....+|++||||++++
T Consensus 155 P~~~~~~~e~~i~l~DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~g~~ 203 (596)
T PLN00044 155 PFGFPDGGDITLFIADWYARDHRAL-RRALDAGDLLGAPDGVLINAFGPY 203 (596)
T ss_pred cccCCcccceEEEecccccCCHHHH-HHHHhcCCCCCCCCceEEcccCcc
Confidence 2322 22489999999999876442 22222 223467899999999875
No 6
>PLN02991 oxidoreductase
Probab=100.00 E-value=4.3e-36 Score=252.57 Aligned_cols=122 Identities=21% Similarity=0.422 Sum_probs=98.9
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEc-CCCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~-~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
+++|+|||||++|.+++|+||+++ |||||+||++|+|+|++ +|+||||||||.+.|+.+||+|+|||+++.++ +.
T Consensus 78 ~~~ttiHWHGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~-~~-- 153 (543)
T PLN02991 78 DEPFLISWSGIRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLI-PV-- 153 (543)
T ss_pred CCCccEEECCcccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCccc-Cc--
Confidence 579999999999999999999998 99999999999999999 58999999999999999999999999987432 21
Q ss_pred CCCCCCCceEEEEeeccccCCCccccCcccCCCCCCCcEEEEecccc
Q psy6774 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNN 128 (140)
Q Consensus 82 ~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~d~~lING~~~ 128 (140)
++...++|++|+|+||++++..++......+...+++|++|||||+.
T Consensus 154 p~~~~d~d~~i~l~DW~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~ 200 (543)
T PLN02991 154 PFPAPADDYTVLIGDWYKTNHKDLRAQLDNGGKLPLPDGILINGRGS 200 (543)
T ss_pred ccccccceeEEEecceecCCHHHHHHHhhcCCCCCCCCEEEEccCCC
Confidence 12211237999999999987544322211223356899999999975
No 7
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2e-35 Score=249.02 Aligned_cols=127 Identities=33% Similarity=0.614 Sum_probs=103.6
Q ss_pred CCCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 2 ~~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
..++++|||||+++.+++|+||++++|||+|+||++|+|+|+++|+||||||||.+.|+.+||+|+|||+++.++. .
T Consensus 51 ~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~---~ 127 (541)
T TIGR03388 51 HTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEK---E 127 (541)
T ss_pred CCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccceEEEEEecCCCCC---C
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999874322 1
Q ss_pred CCCCCCCceEEEEeeccccCCCccccCcccC--CCCCCCcEEEEecccccccc
Q psy6774 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLRT--NTGNFPETYLINGKNNYVYV 132 (140)
Q Consensus 82 ~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~~--~~~~~~d~~lING~~~~~~~ 132 (140)
++++|. |++|+|+||+++...+........ ....++|++|||||+++.|.
T Consensus 128 p~~~d~-e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~ 179 (541)
T TIGR03388 128 PFHYDG-EFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCS 179 (541)
T ss_pred Cccccc-eEEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCc
Confidence 244553 899999999998764322221111 11257899999999988653
No 8
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.9e-35 Score=248.59 Aligned_cols=122 Identities=26% Similarity=0.451 Sum_probs=98.1
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEc-CCCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~-~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
+++++|||||++|.+++|+||+++ |||||+||++|+|+|++ +|+||||||||.+.|+.+||+|+|||+++... +.
T Consensus 66 ~~~ttiHWHGl~q~~~~~~DGv~~-tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~-~~-- 141 (536)
T PLN02792 66 DEPFLLSWNGVHMRKNSYQDGVYG-TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRI-PV-- 141 (536)
T ss_pred CCCcCEeCCCcccCCCCccCCCCC-CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCccc-Cc--
Confidence 589999999999999999999987 99999999999999999 58999999999999999999999999876322 21
Q ss_pred CCCCCCCceEEEEeeccccCCCccccCccc-CC-CCCCCcEEEEeccccc
Q psy6774 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLR-TN-TGNFPETYLINGKNNY 129 (140)
Q Consensus 82 ~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~-~~-~~~~~d~~lING~~~~ 129 (140)
+++..+.|++|+|+||++.+...+ ...+. +. .+.++|++|||||++.
T Consensus 142 p~~~~d~e~~i~l~Dw~~~~~~~~-~~~~~~g~~~~~~~d~~liNG~~~~ 190 (536)
T PLN02792 142 PFPEPAGDFTFLIGDWYRRNHTTL-KKILDGGRKLPLMPDGVMINGQGVS 190 (536)
T ss_pred CCCcccceeEEEecccccCCHHHH-HHHhhccCcCCCCCCEEEEeccCCC
Confidence 233223379999999999876442 22222 21 2348999999999763
No 9
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=3.5e-35 Score=247.39 Aligned_cols=124 Identities=31% Similarity=0.603 Sum_probs=99.9
Q ss_pred CCCCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEc--CCCceeeEeccccccccCCceEEEEEcCCCCCCC
Q psy6774 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA--VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDK 78 (140)
Q Consensus 1 ~~~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~--~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~ 78 (140)
|.+++|+|||||++|..++|+||++++|||||+||++|+|+|++ .|+||||||||.+.|+. ||+|+|||+++.. .
T Consensus 57 L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~-~- 133 (538)
T TIGR03390 57 IPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEP-P- 133 (538)
T ss_pred CCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCc-c-
Confidence 34589999999999999999999999999999999999999997 48999999999999986 5999999998732 1
Q ss_pred CCCCCCCCCCceEEEEeeccccCCCccccCcccC--CCCCCCcEEEEeccccccc
Q psy6774 79 TAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRT--NTGNFPETYLINGKNNYVY 131 (140)
Q Consensus 79 ~~~~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~~--~~~~~~d~~lING~~~~~~ 131 (140)
.+++|. |++|+|+||+++...++....... ....+++++|||||+...+
T Consensus 134 ---~~~~d~-e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~ 184 (538)
T TIGR03390 134 ---PYKYDD-ERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKS 184 (538)
T ss_pred ---CCCccC-cEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCcccccc
Confidence 244553 899999999998875533222221 1135679999999976544
No 10
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.7e-34 Score=243.35 Aligned_cols=126 Identities=25% Similarity=0.468 Sum_probs=98.8
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEc-CCCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~-~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
.++|+|||||++|.+++|+||++++|||||+||++|+|+|++ +|+||||||||...|. +||+|+|||+++.+...
T Consensus 53 ~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~--- 128 (539)
T TIGR03389 53 QYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPY--- 128 (539)
T ss_pred CCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCC---
Confidence 478999999999999999999999999999999999999999 5899999999997665 59999999998743221
Q ss_pred CCCCCCCceEEEEeeccccCCCccccCccc-CCCCCCCcEEEEeccc-ccccc
Q psy6774 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLR-TNTGNFPETYLINGKN-NYVYV 132 (140)
Q Consensus 82 ~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~-~~~~~~~d~~lING~~-~~~~~ 132 (140)
.++..++|++|+|+||++.+..+.+..... +..+.++|++|||||. .+..|
T Consensus 129 ~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~ 181 (539)
T TIGR03389 129 PFPKPDREVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNC 181 (539)
T ss_pred CCCCCCceEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCC
Confidence 122223479999999999876543322222 2234678999999994 44333
No 11
>PLN02604 oxidoreductase
Probab=100.00 E-value=5.3e-34 Score=241.45 Aligned_cols=127 Identities=38% Similarity=0.699 Sum_probs=103.8
Q ss_pred CCCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 2 ~~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
..++++|||||+++.+++|+||++++|||+|+||++++|+|+++++||||||||...|+.+||+|+|||+++..+. .
T Consensus 74 ~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~---~ 150 (566)
T PLN02604 74 LTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKS---E 150 (566)
T ss_pred CCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCC---C
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999874322 1
Q ss_pred CCCCCCCceEEEEeeccccCCCccccCcccC--CCCCCCcEEEEecccccccc
Q psy6774 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLRT--NTGNFPETYLINGKNNYVYV 132 (140)
Q Consensus 82 ~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~~--~~~~~~d~~lING~~~~~~~ 132 (140)
++.+|. |.+|+|+||++.+..+........ ....++|++||||+|++.|.
T Consensus 151 p~~~d~-d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~ 202 (566)
T PLN02604 151 PFSYDY-DRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCS 202 (566)
T ss_pred ccccCc-ceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCc
Confidence 244443 789999999998765433222111 11257899999999998763
No 12
>KOG1263|consensus
Probab=100.00 E-value=7.5e-34 Score=239.02 Aligned_cols=120 Identities=33% Similarity=0.675 Sum_probs=100.1
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEcC-CCceeeEeccccccccCCceEEEEEcCCCCCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAV-PDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~~-~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~ 81 (140)
+++++|||||++|..++|+|| +.+|||||+||++|+|+|+++ |.||||||+|++.|+++|++|+|||+++.... .
T Consensus 78 ~~~~sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p---~ 153 (563)
T KOG1263|consen 78 DEPFSIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLP---V 153 (563)
T ss_pred CCceEEEeccccccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCC---C
Confidence 589999999999999999999 999999999999999999996 89999999999999999999999999985433 2
Q ss_pred CCCCCCCceEEEEeecccc-CCCccccCccc-CCC-CCCCcEEEEeccc
Q psy6774 82 LWDYDLPSHVIIITDWLHD-MTDEKYPGFLR-TNT-GNFPETYLINGKN 127 (140)
Q Consensus 82 ~~~~d~~e~~l~l~Dw~~~-~~~~~~~~~~~-~~~-~~~~d~~lING~~ 127 (140)
+++.+++|++|+|+|||.+ +... +...+. ... +..+|.++|||++
T Consensus 154 pf~~pd~E~~ill~dW~~~~~~~~-l~~~~~~~~~~p~~~D~~~iNg~~ 201 (563)
T KOG1263|consen 154 PFPKPDKEFTILLGDWYKNLNHKN-LKNFLDRTGALPNPSDGVLINGRS 201 (563)
T ss_pred CCCCCCceeEEEeEeeccccCHHH-HHHhhccCCCCCCCCCceEECCCC
Confidence 3444556999999999996 4433 333322 222 3449999999996
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.96 E-value=5.3e-30 Score=217.39 Aligned_cols=93 Identities=33% Similarity=0.667 Sum_probs=81.5
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCCCCCCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAPL 82 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~~ 82 (140)
+++|+|||||+++++ ++||+|++|||+|+||++|+|+|++.++||||||||...|+.+||+|+|||+++.. ++
T Consensus 95 ~~~tsiHwHGl~~~~--~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~-~p---- 167 (587)
T TIGR01480 95 PEDTSIHWHGILLPF--QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPAEP-DP---- 167 (587)
T ss_pred CCCceEEcCCCcCCc--cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccceEEEEECCCcc-cc----
Confidence 578999999999975 79999999999999999999999999999999999999999999999999987632 22
Q ss_pred CCCCCCceEEEEeeccccCCC
Q psy6774 83 WDYDLPSHVIIITDWLHDMTD 103 (140)
Q Consensus 83 ~~~d~~e~~l~l~Dw~~~~~~ 103 (140)
+++|. |++|+|+||++.+..
T Consensus 168 ~~~D~-E~vl~L~Dw~~~~p~ 187 (587)
T TIGR01480 168 VRADR-EHVVLLSDWTDLDPA 187 (587)
T ss_pred CCCCc-eEEEEeeecccCCHH
Confidence 34443 899999999976543
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=99.96 E-value=4.2e-29 Score=209.87 Aligned_cols=124 Identities=25% Similarity=0.309 Sum_probs=95.9
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEcCC-CceeeEeccc----cccccCCceEEEEEcCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVP-DGTFFYHSHI----ALQKMDGIEGSFIIREPRSID 77 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~~~-~Gt~wYH~H~----~~q~~~GL~G~liV~~~~~~~ 77 (140)
+++|+|||||+++++ .+||+| ||+|+||++|+|+|+++| +||||||||. +.|+++||+|+|||+++.+..
T Consensus 96 ~~~ttiHwHGl~~~~--~~DG~p---q~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~ 170 (523)
T PRK10965 96 PEETTLHWHGLEVPG--EVDGGP---QGIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLK 170 (523)
T ss_pred CCCccEEcccccCCC--ccCCCC---CCCCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccc
Confidence 478999999999986 499987 899999999999999986 8999999995 799999999999999884322
Q ss_pred -CCCCCCCCCCCceEEEEeeccccCCCccccC-c-ccCCCCCCCcEEEEecccc-ccccC
Q psy6774 78 -KTAPLWDYDLPSHVIIITDWLHDMTDEKYPG-F-LRTNTGNFPETYLINGKNN-YVYVS 133 (140)
Q Consensus 78 -~~~~~~~~d~~e~~l~l~Dw~~~~~~~~~~~-~-~~~~~~~~~d~~lING~~~-~~~~s 133 (140)
+.+..|+.+ |++|+|+||+++...++... . .....+..+|.+||||+.. +..++
T Consensus 171 ~~lp~~~~~~--d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~~p~~~v~ 228 (523)
T PRK10965 171 LGLPKQWGVD--DIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAP 228 (523)
T ss_pred cCCcccCCCc--eeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcccceeecC
Confidence 122234444 79999999999877653211 1 1123457899999999943 44444
No 15
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.95 E-value=7.1e-29 Score=171.90 Aligned_cols=71 Identities=45% Similarity=0.883 Sum_probs=66.8
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEcCC-CceeeEeccccccccCCceEEEEEcCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVP-DGTFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~~~-~Gt~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
+++++|||||+++++.+|+||+++++||+|+||++|+|+|++++ +||||||||...|..+||+|+|||+++
T Consensus 45 ~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 45 DEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 67999999999999988999999999999999999999999987 999999999988878999999999986
No 16
>PRK10883 FtsI repressor; Provisional
Probab=99.95 E-value=4.7e-27 Score=195.47 Aligned_cols=123 Identities=23% Similarity=0.296 Sum_probs=92.5
Q ss_pred CCCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEcCC-CceeeEeccc----cccccCCceEEEEEcCCCCCC
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVP-DGTFFYHSHI----ALQKMDGIEGSFIIREPRSID 77 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~~~-~Gt~wYH~H~----~~q~~~GL~G~liV~~~~~~~ 77 (140)
+++|+|||||+++++. .+||++ ++|+||++|+|+|++++ +||||||||. +.|+++||+|+|||+++.+..
T Consensus 96 ~~~ttiHwHGl~~~~~-~~~g~~----~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~ 170 (471)
T PRK10883 96 TEPVSMTVSGLQVPGP-LMGGPA----RMMSPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKS 170 (471)
T ss_pred CCCCceeECCccCCCC-CCCCcc----ccCCCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccc
Confidence 4799999999999875 567654 78999999999999875 9999999995 359999999999999874322
Q ss_pred -CCCCCCCCCCCceEEEEeeccccCCCccccCcccCCCCCCCcEEEEeccc-cccccC
Q psy6774 78 -KTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKN-NYVYVS 133 (140)
Q Consensus 78 -~~~~~~~~d~~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~d~~lING~~-~~~~~s 133 (140)
+....|+.+ |++|+|+||+++........ .....+..+|.+||||+. .+..+.
T Consensus 171 ~~~p~~~~~~--d~~l~l~D~~~~~~g~~~~~-~~~~~g~~gd~~lvNG~~~p~~~v~ 225 (471)
T PRK10883 171 LPIPNHYGVD--DFPVIIQDKRLDNFGTPEYN-EPGSGGFVGDTLLVNGVQSPYVEVS 225 (471)
T ss_pred cCCcccCCCc--ceeEEeeeeeeccCCCcccc-ccccCCccCCeeEECCccCCeEEec
Confidence 222234444 79999999999876542211 112346789999999983 344443
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.91 E-value=4e-24 Score=169.86 Aligned_cols=109 Identities=18% Similarity=0.295 Sum_probs=83.7
Q ss_pred CCcEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEcCCCceeeEecc----ccccccCCceEEEEEcCCCCCCCC
Q psy6774 4 KTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH----IALQKMDGIEGSFIIREPRSIDKT 79 (140)
Q Consensus 4 ~~tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H----~~~q~~~GL~G~liV~~~~~~~~~ 79 (140)
.++++||||.. ++||++.++| |+||++++|+|+++++|||||||| +..|+.+||+|+|||++++.. +
T Consensus 81 ~~h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~-~- 151 (311)
T TIGR02376 81 MPHNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL-P- 151 (311)
T ss_pred CceeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC-c-
Confidence 47889999863 4799888877 999999999999999999999999 467999999999999986321 1
Q ss_pred CCCCCCCCCceEEEEeeccccCCCcc---ccCcccCCCCCCCcEEEEecc
Q psy6774 80 APLWDYDLPSHVIIITDWLHDMTDEK---YPGFLRTNTGNFPETYLINGK 126 (140)
Q Consensus 80 ~~~~~~d~~e~~l~l~Dw~~~~~~~~---~~~~~~~~~~~~~d~~lING~ 126 (140)
+.| +|++|+++||+++..... +......+....++.+|||||
T Consensus 152 ----~~d-~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~ 196 (311)
T TIGR02376 152 ----EYD-KEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGA 196 (311)
T ss_pred ----Ccc-eeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCc
Confidence 234 389999999999765331 111111123467899999999
No 18
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=2e-21 Score=161.00 Aligned_cols=121 Identities=32% Similarity=0.468 Sum_probs=97.0
Q ss_pred cEEEeCCccccCCCCCCCCCCccccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCCCCCCCCCCCCCC
Q psy6774 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAPLWDY 85 (140)
Q Consensus 6 tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~~~~~~~~~~~~ 85 (140)
|++||||+..++ .+||++..+|+++.||++++|.|+.+++||||||+|...|+.+||+|++||+++.++. .++
T Consensus 86 t~vh~HG~~~p~--~~dG~~~~~~~~~~~~~~~~y~f~~~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~-----~~~ 158 (451)
T COG2132 86 TSVHWHGLPVPG--EMDGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQVYDGLAGALIIEDENSEP-----LGV 158 (451)
T ss_pred ceEEEcCcccCc--cccCCCcccccCCCCCCcEEEeecCCCCcceEeccCCCchhhcccceeEEEeCCCCCC-----CCC
Confidence 999999999874 7999999999999999999999999988899999999999999999999999884432 356
Q ss_pred CCCceEEEEeeccccCCCccccCcccCCCCCCCcEEEEecc-ccccccCCC
Q psy6774 86 DLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGK-NNYVYVSNN 135 (140)
Q Consensus 86 d~~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~d~~lING~-~~~~~~s~~ 135 (140)
|+ +.+|++.+|........+.. ........++..+|||+ ..+..++.+
T Consensus 159 d~-~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~~~p~~~~~~g 207 (451)
T COG2132 159 DD-EPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGAILPFKAVPGG 207 (451)
T ss_pred Cc-eEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCCccceeecCCC
Confidence 64 56666677776665443332 23446788999999995 456666654
No 19
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.60 E-value=1.3e-15 Score=109.50 Aligned_cols=66 Identities=21% Similarity=0.389 Sum_probs=50.7
Q ss_pred cEEEeCCccccCCCCCCCCCCccccccCCC---C-e--eEEEEEcCCCceeeEeccccccccCCceEEEEEc
Q psy6774 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHN---T-K--FRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (140)
Q Consensus 6 tsiH~HGl~~~~~~~~DG~~~~tq~~i~pG---~-~--~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~ 71 (140)
..||+||...+..+.+||++.++|+++.|+ + . .+++|+++++||||||||...|..+||+|+|||+
T Consensus 77 ~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 77 FDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 455555555444445899999999998884 1 1 2445555699999999999999999999999995
No 20
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.26 E-value=6.5e-12 Score=107.32 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=55.1
Q ss_pred CCCcEEEeCCccccCCCCCCCCCC--ccccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEc
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQF--VTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~~--~tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~ 71 (140)
..++.|||||+...-. ..||... -....|+||++++|+|+++++|+||||||...|...||++.|.|.
T Consensus 518 ~~~HpmHlHG~~f~v~-~~~G~~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 518 MMAHPIHLHGMWSELE-DGQGEFQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCcceeEcCceeeee-cCCCcccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 4689999999976532 2355321 113689999999999999999999999999999999999999874
No 21
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.58 E-value=3.9e-08 Score=68.85 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=52.9
Q ss_pred CCCcEEEeCCccccCCCCCCCCC-------------C-ccccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEE
Q psy6774 3 GKTVTLHWHGLYQRYTPFMDGVQ-------------F-VTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSF 68 (140)
Q Consensus 3 ~~~tsiH~HGl~~~~~~~~DG~~-------------~-~tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~l 68 (140)
..+..+|+||....-....++.. . -.-..|.||+..+.+|.++.+|.|.||||...+...||.+.+
T Consensus 53 ~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w~~HCHi~~H~~~GM~~~~ 132 (138)
T PF07731_consen 53 SMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPWLFHCHILEHEDNGMMAVF 132 (138)
T ss_dssp TSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEEEEEESSHHHHHTT-EEEE
T ss_pred CCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecceEEEEEEchHHHHhCCCeEEE
Confidence 45889999999864211111110 0 112358899999999999999999999999999999999999
Q ss_pred EEcCC
Q psy6774 69 IIREP 73 (140)
Q Consensus 69 iV~~~ 73 (140)
.|.+.
T Consensus 133 ~v~~~ 137 (138)
T PF07731_consen 133 VVGPQ 137 (138)
T ss_dssp EECHH
T ss_pred EEcCC
Confidence 99753
No 22
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.99 E-value=3.6e-06 Score=60.72 Aligned_cols=45 Identities=31% Similarity=0.634 Sum_probs=34.5
Q ss_pred ceEEEEeeccccCCCccccCcccC-----CCCCCCcEEEEeccccccccC
Q psy6774 89 SHVIIITDWLHDMTDEKYPGFLRT-----NTGNFPETYLINGKNNYVYVS 133 (140)
Q Consensus 89 e~~l~l~Dw~~~~~~~~~~~~~~~-----~~~~~~d~~lING~~~~~~~s 133 (140)
|++|+|+||++.....+....... ..++++|++||||++++.|..
T Consensus 2 e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~ 51 (159)
T PF00394_consen 2 EYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSS 51 (159)
T ss_dssp GGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCT
T ss_pred eEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCcccccccc
Confidence 799999999998887655433321 236899999999999988764
No 23
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.84 E-value=3.6e-05 Score=51.36 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=32.9
Q ss_pred ccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEc
Q psy6774 31 PILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (140)
Q Consensus 31 ~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~ 71 (140)
.+.||+++++.|+ ++|+|.|+|- - +...||.|.|+|+
T Consensus 63 ~~~~G~~~~~tF~--~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 63 LLAPGETYSVTFT--KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EBSTTEEEEEEEE--SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred ecCCCCEEEEEeC--CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 4679999999998 7899999998 4 8888999999995
No 24
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.82 E-value=3.3e-05 Score=51.59 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=32.4
Q ss_pred ccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEc
Q psy6774 31 PILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (140)
Q Consensus 31 ~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~ 71 (140)
.+.||+++++.|.. +|+|.|+|- .+...||.|.|+|+
T Consensus 63 ~~~pG~t~~~tF~~--~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 63 LNSPGESYEVTFST--PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred ccCCCCEEEEEeCC--CEEEEEEcC--CccccCCEEEEEEC
Confidence 46899999998875 899999998 67778999999985
No 25
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=97.32 E-value=0.00057 Score=58.36 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=51.2
Q ss_pred CCcEEEeCCccccCCCCCCCCCC-------c--------cccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEE
Q psy6774 4 KTVTLHWHGLYQRYTPFMDGVQF-------V--------TQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSF 68 (140)
Q Consensus 4 ~~tsiH~HGl~~~~~~~~DG~~~-------~--------tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~l 68 (140)
.++-||.||-...--....|... . --..|+|++....+|+++.+|.|+.|||...+...||+-.|
T Consensus 438 ~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~ 517 (539)
T TIGR03389 438 ENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAF 517 (539)
T ss_pred CCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEE
Confidence 37889999987541111112100 0 01236788888999999999999999999999999999999
Q ss_pred EEcCC
Q psy6774 69 IIREP 73 (140)
Q Consensus 69 iV~~~ 73 (140)
++.+.
T Consensus 518 ~~~~~ 522 (539)
T TIGR03389 518 LVDNG 522 (539)
T ss_pred EEccC
Confidence 88765
No 26
>PLN02835 oxidoreductase
Probab=97.30 E-value=0.00064 Score=58.17 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=51.1
Q ss_pred CCcEEEeCCccccCCCCCCCCC------Cc-------c-ccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEE
Q psy6774 4 KTVTLHWHGLYQRYTPFMDGVQ------FV-------T-QCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFI 69 (140)
Q Consensus 4 ~~tsiH~HGl~~~~~~~~DG~~------~~-------t-q~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~li 69 (140)
.++-||.||-.+.--...+|.- .. . -..|+|++.-.-+|.++.+|.|++|||...+...||...++
T Consensus 431 ~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~ 510 (539)
T PLN02835 431 TMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLR 510 (539)
T ss_pred CCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEE
Confidence 3677899998754211112210 00 0 11367888889999999999999999999899999999999
Q ss_pred EcCC
Q psy6774 70 IREP 73 (140)
Q Consensus 70 V~~~ 73 (140)
|.+.
T Consensus 511 V~~~ 514 (539)
T PLN02835 511 VWNQ 514 (539)
T ss_pred EccC
Confidence 9865
No 27
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.08 E-value=0.00058 Score=48.34 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=25.8
Q ss_pred ccccCCCCeeEEEEEcCCCceeeEecccc
Q psy6774 29 QCPILHNTKFRYKFPAVPDGTFFYHSHIA 57 (140)
Q Consensus 29 q~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~ 57 (140)
+..|+||++.+++|+++++|+|+|||-..
T Consensus 93 s~~I~pGet~TitF~adKpG~Y~y~C~~H 121 (135)
T TIGR03096 93 SEVIKAGETKTISFKADKAGAFTIWCQLH 121 (135)
T ss_pred ceEECCCCeEEEEEECCCCEEEEEeCCCC
Confidence 35689999999999999999999999753
No 28
>PRK02710 plastocyanin; Provisional
Probab=97.04 E-value=0.0012 Score=45.50 Aligned_cols=37 Identities=16% Similarity=0.376 Sum_probs=31.8
Q ss_pred ccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEc
Q psy6774 31 PILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (140)
Q Consensus 31 ~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~ 71 (140)
.+.||+++++.|+. +|+|-|+|- .+...||.|.|+|+
T Consensus 83 ~~~pg~t~~~tF~~--~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 83 AFAPGESWEETFSE--AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred ccCCCCEEEEEecC--CEEEEEEcC--CCccCCcEEEEEEC
Confidence 47899999998876 899999997 45667999999994
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.87 E-value=0.0017 Score=54.23 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=50.4
Q ss_pred CCcEEEeCCccccCCCCCCC----CCCcc-ccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcC
Q psy6774 4 KTVTLHWHGLYQRYTPFMDG----VQFVT-QCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIRE 72 (140)
Q Consensus 4 ~~tsiH~HGl~~~~~~~~DG----~~~~t-q~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~ 72 (140)
..+.+|.||....-..-... .+... -..+.|+....++|+++.+|.|.||||...+...||.+.+.|..
T Consensus 377 ~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 377 MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred CccCeEEcCceEEEEecCCCcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 46789999987542111000 00111 12489999999999999999999999999999999999998853
No 30
>PLN02604 oxidoreductase
Probab=96.85 E-value=0.0021 Score=55.24 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=36.8
Q ss_pred ccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcC
Q psy6774 31 PILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIRE 72 (140)
Q Consensus 31 ~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~ 72 (140)
.|+|+.....+|.++.+|-|..|||...+...||.-.|+...
T Consensus 507 ~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~~ 548 (566)
T PLN02604 507 PVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEGI 548 (566)
T ss_pred EeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeCh
Confidence 377888889999999999999999999999999987776543
No 31
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=96.84 E-value=0.0019 Score=55.26 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=36.5
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcC
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIRE 72 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~ 72 (140)
|+|++...-+|.++.+|.|..|||...+...||.-.|+...
T Consensus 485 vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~~ 525 (541)
T TIGR03388 485 IFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGV 525 (541)
T ss_pred eCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEeccc
Confidence 77888889999999999999999999999999988876543
No 32
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=96.71 E-value=0.0034 Score=53.69 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=35.5
Q ss_pred CCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCC
Q psy6774 34 HNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 34 pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
|+.....+|.++.+|.|..|||+..+...||.-.|+|...
T Consensus 495 ~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~ 534 (538)
T TIGR03390 495 PAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDA 534 (538)
T ss_pred CCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCCh
Confidence 6777788999999999999999999999999988888654
No 33
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.54 E-value=0.0057 Score=42.18 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=30.0
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEc
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~ 71 (140)
..+|++|++.| .++|+|-|+|-. +...||.|.|+|+
T Consensus 80 ~~~G~t~s~Tf--~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 80 SEEGTTYEHTF--EEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred cCCCCEEEEEe--cCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 46889988888 478999999974 5667899999994
No 34
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=96.37 E-value=0.0086 Score=41.33 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=28.9
Q ss_pred CCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCC
Q psy6774 34 HNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 34 pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
+|+++++.| +++|+|-|+|- .+...||.|.|+|.++
T Consensus 54 ~g~~~~~tF--~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 54 INEEYTVTV--TEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEEe--CCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 466655555 67999999998 5778899999999875
No 35
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.35 E-value=0.0063 Score=52.80 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=35.0
Q ss_pred ccCCCCeeEEEEEcCCCceeeEecccc-ccccCCceEEEEEcCC
Q psy6774 31 PILHNTKFRYKFPAVPDGTFFYHSHIA-LQKMDGIEGSFIIREP 73 (140)
Q Consensus 31 ~i~pG~~~~Y~~~~~~~Gt~wYH~H~~-~q~~~GL~G~liV~~~ 73 (140)
-+.||++.+..|+++++|+|||+|..- ...-.+|.|-|+|+++
T Consensus 592 dv~PG~t~svtF~adkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 592 EVAPQATASVTFTADKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEcCCceEEEEEEcCCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 578999999999999999999999852 1122379999999864
No 36
>PRK10965 multicopper oxidase; Provisional
Probab=96.25 E-value=0.0088 Score=51.10 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=42.4
Q ss_pred CCcEEEeCCccccCCCCCCCCCCc------c-ccccCCCCeeEEE--EE--cCCCceeeEeccccccccCCceEEEEEc
Q psy6774 4 KTVTLHWHGLYQRYTPFMDGVQFV------T-QCPILHNTKFRYK--FP--AVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (140)
Q Consensus 4 ~~tsiH~HGl~~~~~~~~DG~~~~------t-q~~i~pG~~~~Y~--~~--~~~~Gt~wYH~H~~~q~~~GL~G~liV~ 71 (140)
.+..+|.||..+.-- ..||.+-- . -.-|.| ++.+.. |. .+..|.|.||||.-.+...||.|.+.|.
T Consensus 447 ~~Hp~HlHg~~F~Vl-~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 447 MLHPFHIHGTQFRIL-SENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred CccCeEEeCcEEEEE-EecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 367899999985421 12443211 0 113555 444433 33 2457899999999999999999999883
No 37
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.16 E-value=0.011 Score=44.32 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=38.7
Q ss_pred ccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCCC
Q psy6774 31 PILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPR 74 (140)
Q Consensus 31 ~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~ 74 (140)
.|.+|++..-.|..-++|+||+-|-...|...||++-|||.+..
T Consensus 146 GI~~G~s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 146 GISSGQSASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred CccCCceeeEEEccCCCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 47789998877776789999999999999999999999998763
No 38
>PLN02792 oxidoreductase
Probab=96.14 E-value=0.019 Score=49.23 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=38.3
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCC
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
|.|++--.-+|.++.+|.|+.|||...+..-||.=.|+|.+.
T Consensus 465 v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~ 506 (536)
T PLN02792 465 VYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSP 506 (536)
T ss_pred ECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccC
Confidence 678888899999999999999999999999999999999865
No 39
>PLN02191 L-ascorbate oxidase
Probab=96.13 E-value=0.019 Score=49.64 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=34.6
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEE
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFII 70 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV 70 (140)
++|++.-..+|.++.+|.|..|||..++...||.=.|+.
T Consensus 508 vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e 546 (574)
T PLN02191 508 LYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAE 546 (574)
T ss_pred eCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEec
Confidence 678888899999999999999999999999998766643
No 40
>PRK10883 FtsI repressor; Provisional
Probab=96.08 E-value=0.0091 Score=50.36 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=42.2
Q ss_pred CcEEEeCCccccCCCCCCCCCCc-----cccccCCCCeeEEEEEcCCCc----eeeEeccccccccCCceEEEEEcCC
Q psy6774 5 TVTLHWHGLYQRYTPFMDGVQFV-----TQCPILHNTKFRYKFPAVPDG----TFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 5 ~tsiH~HGl~~~~~~~~DG~~~~-----tq~~i~pG~~~~Y~~~~~~~G----t~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
++-+|.||..+.-. ..+|.+-. -.+-|.-+++.+..++.+..+ .|+||||.=.+...||.|.|.|.++
T Consensus 394 ~HP~HlHg~~FqVl-~~~G~~~~~~~~gwkDTV~v~~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 394 PQAFHIEGVMFLIR-NVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred CcCEeECCccEEEE-EecCCCCCccccCcCcEEEcCCeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 46789999875421 13443210 012222123455555555433 7999999999999999999999753
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.07 E-value=0.0067 Score=40.52 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=22.3
Q ss_pred cccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEE
Q psy6774 30 CPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFII 70 (140)
Q Consensus 30 ~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV 70 (140)
..|.||++.++.|+..++|+|-|+|-... . |.|-|||
T Consensus 68 ~~l~~g~~~~~~f~~~~~G~y~~~C~~~~---~-m~G~liV 104 (104)
T PF13473_consen 68 KVLPPGETATVTFTPLKPGEYEFYCTMHP---N-MKGTLIV 104 (104)
T ss_dssp EEE-TT-EEEEEEEE-S-EEEEEB-SSS----T-TB-----
T ss_pred EEECCCCEEEEEEcCCCCEEEEEEcCCCC---c-ceecccC
Confidence 46899999999999899999999999655 2 6788776
No 42
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=95.75 E-value=0.036 Score=35.60 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=26.1
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEc
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~ 71 (140)
+.||+++++.| .++|+|-|||-... .|.|.|+|+
T Consensus 50 ~~~g~~~~~tf--~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 50 MKKEQAYSLTF--TEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred cCCCCEEEEEC--CCCEEEEEEcCCCC----CCeEEEEEC
Confidence 46777777655 67999999997632 499999985
No 43
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.75 E-value=0.02 Score=42.53 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=35.2
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCC
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
|.+|++..=.|..-++|+|||-|-.-.+..+||+|-+||-..
T Consensus 146 i~~Gqs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 146 ISSGHSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred ccccceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 456777555566678999999999999999999999999765
No 44
>KOG1263|consensus
Probab=95.56 E-value=0.037 Score=47.72 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=40.1
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCCC
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPR 74 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~~ 74 (140)
|+||.--.-+|.++.+|.|..|||...+...||.=.++|....
T Consensus 497 V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~ 539 (563)
T KOG1263|consen 497 VPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGE 539 (563)
T ss_pred eCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCC
Confidence 8899999999999999999999999999999999999998763
No 45
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=95.47 E-value=0.03 Score=48.62 Aligned_cols=71 Identities=10% Similarity=-0.045 Sum_probs=49.2
Q ss_pred CCcEEEeCCccccCCCCCCCC--------------CCccccccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEE
Q psy6774 4 KTVTLHWHGLYQRYTPFMDGV--------------QFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFI 69 (140)
Q Consensus 4 ~~tsiH~HGl~~~~~~~~DG~--------------~~~tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~li 69 (140)
.+.-+|.||-...--....|. +.-.-..|.+|+--.-+|.++.+|.|+.|||...+...||.=+++
T Consensus 453 ~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~ 532 (596)
T PLN00044 453 NVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYIN 532 (596)
T ss_pred CCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEE
Confidence 467899999875411111111 111112367888889999999999999999987777778888888
Q ss_pred EcCCC
Q psy6774 70 IREPR 74 (140)
Q Consensus 70 V~~~~ 74 (140)
|++..
T Consensus 533 v~~~~ 537 (596)
T PLN00044 533 VVNPE 537 (596)
T ss_pred EecCC
Confidence 88653
No 46
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=95.39 E-value=0.032 Score=39.18 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=27.5
Q ss_pred CCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcC
Q psy6774 33 LHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIRE 72 (140)
Q Consensus 33 ~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~ 72 (140)
.+|++++..|. ++|+|-|.|-. +...||.|.|+|++
T Consensus 93 ~~~~s~~~Tfe--~~G~Y~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 93 GINESFTHTFE--TPGEYTYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred CCCcceEEEec--ccceEEEEecc--CCCCCcEEEEEeCC
Confidence 34566666664 58999999965 56779999999974
No 47
>PLN02168 copper ion binding / pectinesterase
Probab=95.25 E-value=0.038 Score=47.54 Aligned_cols=42 Identities=14% Similarity=-0.011 Sum_probs=34.3
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCC
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
+++++...-+|.++.+|.|+.|||...+...||.=+++|.+.
T Consensus 477 vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~ 518 (545)
T PLN02168 477 VYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGE 518 (545)
T ss_pred eCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcc
Confidence 678889999999999999999999865555566667778644
No 48
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=95.21 E-value=0.043 Score=43.90 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=49.2
Q ss_pred CCcEEEeCCccccCCCCCCCCCC------ccccccCCCCeeEEEEEcCCCceeeEeccccccc-cCCceEEEEEcCC
Q psy6774 4 KTVTLHWHGLYQRYTPFMDGVQF------VTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK-MDGIEGSFIIREP 73 (140)
Q Consensus 4 ~~tsiH~HGl~~~~~~~~DG~~~------~tq~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~-~~GL~G~liV~~~ 73 (140)
....+|.+|.+..-- ..||.+. +....|+||+.+...++++++|+|+.|||.-.+. ..|+.|.|-++..
T Consensus 223 ~~~~~~~~g~~~~~v-~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 223 RDSRPHLIGGHGDYV-WVTGKFANPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEGA 298 (311)
T ss_pred CCCCCeEecCCceEE-EECCcccCCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECCC
Confidence 446678888665321 2477532 2334689999999999999999999999975443 5578888877654
No 49
>PLN02354 copper ion binding / oxidoreductase
Probab=94.66 E-value=0.094 Score=45.19 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=35.3
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCC
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
|++++...-+|.++.+|.|+.|||...+...||.=+++|.++
T Consensus 480 vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~ 521 (552)
T PLN02354 480 VYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSP 521 (552)
T ss_pred eCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCC
Confidence 678888899999999999999999977777788777766654
No 50
>PLN02991 oxidoreductase
Probab=93.71 E-value=0.19 Score=43.29 Aligned_cols=42 Identities=7% Similarity=-0.061 Sum_probs=35.5
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCC
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
|++++...-+|.++.+|.|+.|||...+..-||.=.++|.+.
T Consensus 472 vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~ 513 (543)
T PLN02991 472 VYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTT 513 (543)
T ss_pred ECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCC
Confidence 678888899999999999999999976777788777777654
No 51
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=91.52 E-value=0.52 Score=34.16 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=39.6
Q ss_pred cccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcC
Q psy6774 30 CPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIRE 72 (140)
Q Consensus 30 ~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~ 72 (140)
.-+.||++-...|...++|.|-.-|-+..++..||.|-|.|.+
T Consensus 116 v~L~PG~s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 116 VTLAPGKSGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred eEeCCCCcEEEEEEecCCccEEEEecCCCcccCCcEEEEEeCC
Confidence 4689999999999999999999999999999999999998863
No 52
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=81.52 E-value=4.2 Score=27.90 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=28.5
Q ss_pred cccCCCCeeEEEEEcCCCceeeEeccc-cccccCCceEEEEE
Q psy6774 30 CPILHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFII 70 (140)
Q Consensus 30 ~~i~pG~~~~Y~~~~~~~Gt~wYH~H~-~~q~~~GL~G~liV 70 (140)
.-+-||+.....|+++++|+|+..|.- ...--.-|.|-|+|
T Consensus 78 ~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 78 MDAIPGRTNSVTFTPDKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp EEEBTTCEEEEEEEESSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred cccccccceeeeeeeccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 346799999999999999999999984 11122236676665
No 53
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=81.06 E-value=2.7 Score=34.73 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=30.4
Q ss_pred cccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCC
Q psy6774 30 CPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 30 ~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
--|.||.+..+.+++ .+|||-|+| +.+ ..+.|.|+|...
T Consensus 80 EnIaPG~s~~l~~~L-~pGtY~~~C--~~~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 80 ENIAPGFSQKMTANL-QPGEYDMTC--GLL--TNPKGKLIVKGE 118 (375)
T ss_pred cccCCCCceEEEEec-CCceEEeec--CcC--CCCCceEEEeCC
Confidence 368999998887776 699999999 332 335899999864
No 54
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=79.87 E-value=5.1 Score=31.18 Aligned_cols=44 Identities=9% Similarity=-0.089 Sum_probs=36.4
Q ss_pred cccCCCCeeEEEEEcCCCceeeEeccc-cccccCCceEEEEEcCC
Q psy6774 30 CPILHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIREP 73 (140)
Q Consensus 30 ~~i~pG~~~~Y~~~~~~~Gt~wYH~H~-~~q~~~GL~G~liV~~~ 73 (140)
.-+-||......++++++|+|.-.|.- .......|.|.++|.++
T Consensus 169 ~d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 169 IDAIPGMTTELWLTANKPGTYRGICAEYCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred eeecCCceEEEEEecCCCeEEEEEcHhhcCCCcccceEEEEEEcH
Confidence 345789999999999999999999984 45555679999999987
No 55
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=79.04 E-value=3.7 Score=28.70 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=31.3
Q ss_pred ccCCCCeeEEEEEcC--CCce-eeEeccccccccCCceEEEEE
Q psy6774 31 PILHNTKFRYKFPAV--PDGT-FFYHSHIALQKMDGIEGSFII 70 (140)
Q Consensus 31 ~i~pG~~~~Y~~~~~--~~Gt-~wYH~H~~~q~~~GL~G~liV 70 (140)
-|.||++.+-.|+++ ++|+ |-|-|-.-.+.. .|.|.|.+
T Consensus 84 liggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~l 125 (125)
T TIGR02695 84 VIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVKL 125 (125)
T ss_pred ccCCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEeC
Confidence 378999999999985 6886 999998876665 58888753
No 56
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=68.79 E-value=5.3 Score=25.61 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=19.0
Q ss_pred CCCCCCCcc---ccccCCCCeeEEEEEcC--C--CceeeE
Q psy6774 20 FMDGVQFVT---QCPILHNTKFRYKFPAV--P--DGTFFY 52 (140)
Q Consensus 20 ~~DG~~~~t---q~~i~pG~~~~Y~~~~~--~--~Gt~wY 52 (140)
|++|..... +..|+||++.+|++..+ . +|+|..
T Consensus 41 wS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 41 WSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp TTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred ecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 677775432 33589999999999874 3 688753
No 57
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=61.42 E-value=33 Score=25.47 Aligned_cols=44 Identities=9% Similarity=-0.050 Sum_probs=33.9
Q ss_pred cccCCCCeeEEEEEcCCCceeeEeccc-cccccCCceEEEEEcCC
Q psy6774 30 CPILHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIREP 73 (140)
Q Consensus 30 ~~i~pG~~~~Y~~~~~~~Gt~wYH~H~-~~q~~~GL~G~liV~~~ 73 (140)
.-+-||..-+..|+++++|+|...|.- ....-..|.+-++|.++
T Consensus 149 ~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 149 IDAIPGQYNALWFNADEPGVYYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred EEecCCcEEEEEEEeCCCEEEEEEehhhCCcCccCCeEEEEEECH
Confidence 345699998889999999999999974 22223568899998875
No 58
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=56.95 E-value=8.7 Score=31.67 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCCCCCCccccccCCCCeeEEEEEc--CCCceeeEeccccccccCCceEE
Q psy6774 20 FMDGVQFVTQCPILHNTKFRYKFPA--VPDGTFFYHSHIALQKMDGIEGS 67 (140)
Q Consensus 20 ~~DG~~~~tq~~i~pG~~~~Y~~~~--~~~Gt~wYH~H~~~q~~~GL~G~ 67 (140)
|+.|.+-....++..|+++.|+..+ .++|+|.-|.-...+-.-.+.|+
T Consensus 71 ~ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gp 120 (381)
T PF04744_consen 71 WINGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGP 120 (381)
T ss_dssp EETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEE
T ss_pred eecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCC
Confidence 5666665555678999999888766 67999644443333333234444
No 59
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=55.17 E-value=22 Score=25.12 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=32.2
Q ss_pred cEEEeCCccccCCCCCCCCCCc----cccccCCCCeeEEEEEcCC-CceeeEecc
Q psy6774 6 VTLHWHGLYQRYTPFMDGVQFV----TQCPILHNTKFRYKFPAVP-DGTFFYHSH 55 (140)
Q Consensus 6 tsiH~HGl~~~~~~~~DG~~~~----tq~~i~pG~~~~Y~~~~~~-~Gt~wYH~H 55 (140)
..++..|....-. ..||.+-- +...|.||+.+...+++++ +|.||..+.
T Consensus 83 ~~~~i~gh~~~Vi-a~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 83 FNFSIDGHPMTVI-AADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp EEEEETTBCEEEE-EETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEE
T ss_pred EEEEeeccceeEe-eeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEe
Confidence 4566666533211 25776422 1334899999999999987 999999994
No 60
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=53.98 E-value=18 Score=25.61 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=22.1
Q ss_pred ccccCCCCeeEEEEEc---C-CCceeeEeccc
Q psy6774 29 QCPILHNTKFRYKFPA---V-PDGTFFYHSHI 56 (140)
Q Consensus 29 q~~i~pG~~~~Y~~~~---~-~~Gt~wYH~H~ 56 (140)
.-||+||++.+-.+.. + ..|+|.|++-+
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 5589999999999943 2 36999998864
No 61
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.32 E-value=79 Score=23.60 Aligned_cols=41 Identities=7% Similarity=-0.119 Sum_probs=30.6
Q ss_pred CCCCeeEEEEEcCCCceeeEeccc-cccccCCceEEEEEcCC
Q psy6774 33 LHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIREP 73 (140)
Q Consensus 33 ~pG~~~~Y~~~~~~~Gt~wYH~H~-~~q~~~GL~G~liV~~~ 73 (140)
-||..-...|+++++|+|.--|.- ...--..|.+-+.|.++
T Consensus 151 ~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 151 IPGRINHLFFCPDRHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCCceEEEEEEcCCCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 489999889999999999888873 22223357788888765
No 62
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=48.37 E-value=26 Score=24.09 Aligned_cols=23 Identities=26% Similarity=0.729 Sum_probs=17.0
Q ss_pred CCCCCCccccccCCCCeeEEEEEc
Q psy6774 21 MDGVQFVTQCPILHNTKFRYKFPA 44 (140)
Q Consensus 21 ~DG~~~~tq~~i~pG~~~~Y~~~~ 44 (140)
.||=-+ ..|||.+|+.++|.+..
T Consensus 65 ~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 65 TDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCccc-EeCCCcCCcEEEEEEee
Confidence 455322 37999999999998865
No 63
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=45.37 E-value=27 Score=21.84 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=12.0
Q ss_pred CCCCCccccccCCCCeeEEEEEcC
Q psy6774 22 DGVQFVTQCPILHNTKFRYKFPAV 45 (140)
Q Consensus 22 DG~~~~tq~~i~pG~~~~Y~~~~~ 45 (140)
+|.-.++ .+++||. +.|+|.++
T Consensus 35 ~G~w~~~-~~l~~G~-y~Ykf~vd 56 (82)
T cd02861 35 DGLWVVT-VELRPGR-YEYKFVVD 56 (82)
T ss_pred CCcEEEE-EeCCCCc-EEEEEEEC
Confidence 3443333 3466665 67777665
No 64
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=39.11 E-value=14 Score=24.96 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=5.6
Q ss_pred eEeccc
Q psy6774 51 FYHSHI 56 (140)
Q Consensus 51 wYH~H~ 56 (140)
|||||.
T Consensus 70 ~YHSHP 75 (119)
T cd08058 70 WYHSHP 75 (119)
T ss_pred EEecCC
Confidence 999996
No 65
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=38.40 E-value=27 Score=23.72 Aligned_cols=16 Identities=19% Similarity=0.600 Sum_probs=14.0
Q ss_pred ccccCCCCeeEEEEEc
Q psy6774 29 QCPILHNTKFRYKFPA 44 (140)
Q Consensus 29 q~~i~pG~~~~Y~~~~ 44 (140)
.||+.+|+.++|.+..
T Consensus 79 ~CPl~~G~~~~~~~~~ 94 (127)
T cd00912 79 FCPLRKGQQYSYAKTV 94 (127)
T ss_pred cCCcCCCCEEEEEEEE
Confidence 6999999999998764
No 66
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=37.55 E-value=25 Score=23.71 Aligned_cols=16 Identities=25% Similarity=0.746 Sum_probs=13.5
Q ss_pred ccccCCCCeeEEEEEc
Q psy6774 29 QCPILHNTKFRYKFPA 44 (140)
Q Consensus 29 q~~i~pG~~~~Y~~~~ 44 (140)
.|||.+|+.++|.+..
T Consensus 85 ~CPi~~G~~~~~~~~~ 100 (134)
T PF02221_consen 85 SCPIKAGEYYTYTYTI 100 (134)
T ss_dssp TSTBTTTEEEEEEEEE
T ss_pred cCccCCCcEEEEEEEE
Confidence 7999999988877765
No 67
>KOG1554|consensus
Probab=33.99 E-value=37 Score=27.27 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=17.6
Q ss_pred eeeEecccc---------------ccccCCceEEEEEcCCCC
Q psy6774 49 TFFYHSHIA---------------LQKMDGIEGSFIIREPRS 75 (140)
Q Consensus 49 t~wYH~H~~---------------~q~~~GL~G~liV~~~~~ 75 (140)
.=|||+|.+ .|.+.--+=++||+|..+
T Consensus 134 VGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~Rt 175 (347)
T KOG1554|consen 134 VGWYHSHPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPTRT 175 (347)
T ss_pred eeeeecCCCCCccccCcchhHHHHhhhhcCCeEEEEecCccc
Confidence 459999942 233444667888887644
No 68
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=32.15 E-value=41 Score=22.94 Aligned_cols=17 Identities=24% Similarity=0.618 Sum_probs=14.8
Q ss_pred cccccCCCCeeEEEEEc
Q psy6774 28 TQCPILHNTKFRYKFPA 44 (140)
Q Consensus 28 tq~~i~pG~~~~Y~~~~ 44 (140)
..|||.+|+.++|.+.+
T Consensus 75 ~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 75 TSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCCCcCCcEEEEEEee
Confidence 46999999999999865
No 69
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=31.80 E-value=33 Score=29.50 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=26.0
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccc-cccccCCceEEEEEc
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIR 71 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~-~~q~~~GL~G~liV~ 71 (140)
+.|-++-.|.|.++.+|.+||-|-- .+.+-.=|+|-+||+
T Consensus 596 v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rmlve 636 (637)
T COG4263 596 VKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRMLVE 636 (637)
T ss_pred EccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccceeec
Confidence 5677777777888788888877642 222222366777775
No 70
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=31.20 E-value=22 Score=29.44 Aligned_cols=48 Identities=13% Similarity=0.313 Sum_probs=30.0
Q ss_pred CCCCCCCccccccCCCCeeEEEEEc--CCCceeeEeccccccccCCceEE
Q psy6774 20 FMDGVQFVTQCPILHNTKFRYKFPA--VPDGTFFYHSHIALQKMDGIEGS 67 (140)
Q Consensus 20 ~~DG~~~~tq~~i~pG~~~~Y~~~~--~~~Gt~wYH~H~~~q~~~GL~G~ 67 (140)
|-.|.+-....++..|+++.|+..+ +.+|+|.-|+-...+-.-++.||
T Consensus 91 ~lng~~~~~S~~LelG~dYefkv~lkaR~pG~~hvh~m~Nv~~~GpiiGP 140 (399)
T TIGR03079 91 KVNGMPVFISGPLEIGRDYEFEVTLQARIPGRHHMHAMLNVKDAGPIAGP 140 (399)
T ss_pred EECCEeecceeEeecCCceeEEEEEeeccCCcccceeEEEeccCCCCcCC
Confidence 4455443333457889998888765 57999755554445555456666
No 71
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.66 E-value=1.3e+02 Score=22.90 Aligned_cols=42 Identities=10% Similarity=-0.073 Sum_probs=29.1
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccc-cccccCCceEEEEEcCC
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIREP 73 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~-~~q~~~GL~G~liV~~~ 73 (140)
+-||+.-...|.++++|+|+-.|.- ....-..|...+.|.++
T Consensus 174 a~PG~~~~~~~~~~~~G~~~g~C~e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 174 AVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred cCCCceEEEEEEeCCceEEEEEChhhccccccCCcEEEEEECH
Confidence 3589998889999999999988873 11222346666666544
No 72
>KOG2853|consensus
Probab=30.13 E-value=93 Score=26.10 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=24.4
Q ss_pred cccCCCCeeEEEEEcCC-Ccee---eEeccccccccCCceEEEEE
Q psy6774 30 CPILHNTKFRYKFPAVP-DGTF---FYHSHIALQKMDGIEGSFII 70 (140)
Q Consensus 30 ~~i~pG~~~~Y~~~~~~-~Gt~---wYH~H~~~q~~~GL~G~liV 70 (140)
.||.|.+.+.|.+.+++ +|.- ---+--.--+.+||-|-+++
T Consensus 340 lPiepRKRyvyvi~~~~~PGl~~Pl~iDpsG~f~Rrdglg~nfl~ 384 (509)
T KOG2853|consen 340 LPIEPRKRYVYVIFAPDVPGLDTPLTIDPSGVFFRRDGLGGNFLC 384 (509)
T ss_pred ccCCccceeEEEEeCCCCCCCCCceeECCCccEEEecCCCCceec
Confidence 47889999999886643 4311 00000001356788899888
No 73
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=28.62 E-value=1.6e+02 Score=21.46 Aligned_cols=42 Identities=7% Similarity=-0.013 Sum_probs=28.8
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccc-cccccCCceEEEEEcCC
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIREP 73 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~-~~q~~~GL~G~liV~~~ 73 (140)
+-||..-...+.+.++|+|.-.|.- ..-.-..|.+.+.|.++
T Consensus 107 avPGr~n~l~~~~~~~G~y~gqCsElCG~gHs~M~~~V~vvs~ 149 (162)
T PTZ00047 107 AIPGRLHKINTFILREGVFYGQCSEMCGTLHGFMPIVVEAVSP 149 (162)
T ss_pred ccCCceEEEEEecCCCeEEEEEcchhcCcCccCceEEEEEeCH
Confidence 3488888888888899999999983 11112236677776554
No 74
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=28.24 E-value=26 Score=25.98 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=5.5
Q ss_pred eEeccc
Q psy6774 51 FYHSHI 56 (140)
Q Consensus 51 wYH~H~ 56 (140)
|||||.
T Consensus 84 wYHSHP 89 (187)
T cd08067 84 WYHSHP 89 (187)
T ss_pred EEecCC
Confidence 999995
No 75
>KOG4063|consensus
Probab=27.49 E-value=48 Score=24.02 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=15.2
Q ss_pred cccccCCCCeeEEEEEcC
Q psy6774 28 TQCPILHNTKFRYKFPAV 45 (140)
Q Consensus 28 tq~~i~pG~~~~Y~~~~~ 45 (140)
--||+.+|++++|.+..+
T Consensus 106 v~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 106 VYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ccCcccCCCceEEEEEee
Confidence 369999999999998753
No 76
>KOG1555|consensus
Probab=27.03 E-value=26 Score=28.34 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=17.2
Q ss_pred eeeEecccc---------------ccccCCceEEEEEcCCC
Q psy6774 49 TFFYHSHIA---------------LQKMDGIEGSFIIREPR 74 (140)
Q Consensus 49 t~wYH~H~~---------------~q~~~GL~G~liV~~~~ 74 (140)
.=|||||.+ -|....+..+.+|.+..
T Consensus 118 VGWYHSHP~f~~wpS~vDi~tQ~syq~~~~r~~a~~v~~i~ 158 (316)
T KOG1555|consen 118 VGWYHSHPGFGCWPSLVDIDTQQSYQALSSRAVAVVVDPIQ 158 (316)
T ss_pred EeeccCCCCCCCCccccchhHHHHHhhhccCCcceeeeccc
Confidence 349999952 23345777888887653
No 77
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=26.95 E-value=53 Score=21.77 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=13.6
Q ss_pred ccccCCCCeeEEEEEc
Q psy6774 29 QCPILHNTKFRYKFPA 44 (140)
Q Consensus 29 q~~i~pG~~~~Y~~~~ 44 (140)
.||+.+|+.+.|....
T Consensus 71 ~CPl~~G~~~~~~~~~ 86 (118)
T smart00737 71 KCPIEKGETVNYTNSL 86 (118)
T ss_pred CCCCCCCeeEEEEEee
Confidence 6999999998887753
No 78
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=26.07 E-value=1.8e+02 Score=19.06 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=29.4
Q ss_pred cccCCCCeeEEEEEcCCCceeeEeccccccccCCceEEEEEcCC
Q psy6774 30 CPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (140)
Q Consensus 30 ~~i~pG~~~~Y~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~ 73 (140)
..+.||+++..+|..+-.|+-.|.|+... ....-..-+.|-..
T Consensus 29 ~~l~~g~~~~~~F~~~~~~~t~f~C~~~~-~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 29 HVLKPGQSYSFSFRDNFFGTTLFWCHFRW-PGGKYHHSFDVYRS 71 (110)
T ss_pred EECCCCCEEEEEEecCcCCceeEEEEEEE-CCccEEEEEEEEec
Confidence 36899999999998765677777899866 11113555655443
No 79
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.89 E-value=1.8e+02 Score=22.14 Aligned_cols=42 Identities=7% Similarity=-0.052 Sum_probs=30.0
Q ss_pred cCCCCeeEEEEEcCCCceeeEeccc-cccccCCceEEEEEcCC
Q psy6774 32 ILHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIREP 73 (140)
Q Consensus 32 i~pG~~~~Y~~~~~~~Gt~wYH~H~-~~q~~~GL~G~liV~~~ 73 (140)
+-||..-...|+++++|+|+-.|.- ...--.-|.+.++|.++
T Consensus 174 ~~Pg~~~~~~~~~~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 174 AIPGRLNQLSFEPKRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCCCcceeEEEEeCCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 4589998888999999999888873 12222346777777654
No 80
>PF10290 DUF2403: Glycine-rich protein domain (DUF2403); InterPro: IPR018807 This domain is found N-terminal to IPR018805 from INTERPRO. The function of this glycine-rich domain is unknown.
Probab=25.81 E-value=40 Score=20.80 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=9.1
Q ss_pred CCCcEEEeCCc
Q psy6774 3 GKTVTLHWHGL 13 (140)
Q Consensus 3 ~~~tsiH~HGl 13 (140)
+|+.|+|++|=
T Consensus 43 ~EelSvhFRGP 53 (65)
T PF10290_consen 43 NEELSVHFRGP 53 (65)
T ss_pred CCcEEEEEeCC
Confidence 67899999884
No 81
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=25.48 E-value=31 Score=26.87 Aligned_cols=7 Identities=57% Similarity=0.847 Sum_probs=5.8
Q ss_pred eeEeccc
Q psy6774 50 FFYHSHI 56 (140)
Q Consensus 50 ~wYH~H~ 56 (140)
=|||||.
T Consensus 93 GwYHSHP 99 (244)
T cd08068 93 GWYHSHP 99 (244)
T ss_pred EEEecCC
Confidence 3999995
No 82
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.19 E-value=1.2e+02 Score=23.14 Aligned_cols=40 Identities=3% Similarity=-0.059 Sum_probs=26.4
Q ss_pred CCCCeeEEEEEcCCCceeeEeccc-cccccCCceEEEEEcC
Q psy6774 33 LHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIRE 72 (140)
Q Consensus 33 ~pG~~~~Y~~~~~~~Gt~wYH~H~-~~q~~~GL~G~liV~~ 72 (140)
-||+.-...|.++++|+|+--|.- ...--.-|...+.|.+
T Consensus 175 iPG~~~~~~~~~~~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 175 IPGRLNQTTLMSTRPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred CCCceEEEEEecCCcEEEEEECccccCcCcCCceEEEEEeC
Confidence 489988888999999999888863 1111123555555544
No 83
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=22.13 E-value=86 Score=21.99 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.9
Q ss_pred cccccCCCCeeEEE--EEc
Q psy6774 28 TQCPILHNTKFRYK--FPA 44 (140)
Q Consensus 28 tq~~i~pG~~~~Y~--~~~ 44 (140)
+.||+..|++.+|. +..
T Consensus 81 s~CP~~kGet~~Y~~p~sl 99 (130)
T cd00915 81 SFCGALKGETVYYVGPFSF 99 (130)
T ss_pred ccCCccCCceEEEeeeecc
Confidence 78999999999999 554
No 84
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=21.16 E-value=70 Score=22.27 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=9.5
Q ss_pred ccccCCCCeeEEE
Q psy6774 29 QCPILHNTKFRYK 41 (140)
Q Consensus 29 q~~i~pG~~~~Y~ 41 (140)
|.-|.||++|.|.
T Consensus 73 qP~L~PGe~F~Y~ 85 (127)
T PRK05461 73 QPVLAPGESFEYT 85 (127)
T ss_pred CceECCCCCeEEe
Confidence 3346899988874
No 85
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=20.27 E-value=1.4e+02 Score=22.46 Aligned_cols=44 Identities=7% Similarity=-0.034 Sum_probs=30.0
Q ss_pred ccccCCCCeeEEEEEcCCCceeeEeccc-cccccCCceEEEEEcCC
Q psy6774 29 QCPILHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIREP 73 (140)
Q Consensus 29 q~~i~pG~~~~Y~~~~~~~Gt~wYH~H~-~~q~~~GL~G~liV~~~ 73 (140)
++.| ||..-...|+++++|+|.-.|-- ...--.-|..-+.|.++
T Consensus 162 ~dai-PG~~~~~~~~~~~~G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 162 KYAM-TGMTMNWYLQADQVGTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred eecC-CCceEEEEEEeCCCEEEEEEehhhcCccccCCeEEEEEeCH
Confidence 4444 89998889999999999888852 21122246677776654
No 86
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=20.11 E-value=96 Score=19.71 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=13.5
Q ss_pred ccccCCCCeeEEEEEc
Q psy6774 29 QCPILHNTKFRYKFPA 44 (140)
Q Consensus 29 q~~i~pG~~~~Y~~~~ 44 (140)
-.++.+|..|.|++.+
T Consensus 33 T~~L~~G~~y~Y~v~a 48 (75)
T TIGR03000 33 TPPLEAGKEYEYTVTA 48 (75)
T ss_pred CCCCCCCCEEEEEEEE
Confidence 3478999999999987
No 87
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=20.00 E-value=68 Score=22.34 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=14.3
Q ss_pred CCCCCccccccCCCCeeEEEE
Q psy6774 22 DGVQFVTQCPILHNTKFRYKF 42 (140)
Q Consensus 22 DG~~~~tq~~i~pG~~~~Y~~ 42 (140)
+|+-|- |.-++||++|+|.=
T Consensus 66 ~GVVGe-QP~l~PG~~y~YtS 85 (126)
T COG2967 66 EGVVGE-QPLLAPGEEYQYTS 85 (126)
T ss_pred Cceecc-ccccCCCCceEEcC
Confidence 444332 67799999999963
Done!