RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6774
(140 letters)
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 93.0 bits (231), Expect = 5e-23
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK 60
++ + V +HWHG+ Q TP+ DG + VTQCPIL F Y+F GT+ YH+H +Q+
Sbjct: 73 LLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQR 132
Query: 61 MDGIEGSFIIREPRSIDKTAPL-WDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNF-- 117
G+ GS + PR K+ P +DYD II+TDW H T E+ G L + ++
Sbjct: 133 EAGLYGSIRVSLPRG--KSEPFSYDYD---RSIILTDWYHKSTYEQALG-LSSIPFDWVG 186
Query: 118 -PETYLINGKNNY 129
P++ LI GK Y
Sbjct: 187 EPQSLLIQGKGRY 199
>gnl|CDD|219542 pfam07732, Cu-oxidase_3, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 119
Score = 83.8 bits (208), Expect = 6e-22
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 5 TVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAV-PDGTFFYHSHIALQKM-D 62
T+HWHGL Q TP+ DGV VTQCPI F Y+F GT++YHSH + +
Sbjct: 47 PTTIHWHGLRQPGTPWADGVPGVTQCPIPPGESFTYRFTVKQQAGTYWYHSHTSWLQQAA 106
Query: 63 GIEGSFIIREPRS 75
G+ G+ II +P S
Sbjct: 107 GLYGAIIIEDPAS 119
>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type. Members of
this protein family are the copper-containing enzyme
L-ascorbate oxidase (EC 1.10.3.3), also called
ascorbase. This family is found in flowering plants, and
shows greater sequence similarity to a family of
laccases (EC 1.10.3.2) from plants than to other known
ascorbate oxidases.
Length = 541
Score = 85.2 bits (211), Expect = 3e-20
Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIE 65
V +HWHG+ Q TP+ DG VTQC I F Y F GT+FYH H +Q+ G+
Sbjct: 55 VVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLY 114
Query: 66 GSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNF---PETYL 122
GS I+ P +K +D + ++++DW H E+ G L + + P++ L
Sbjct: 115 GSLIVDVPDG-EKEPFHYDGE---FNLLLSDWWHKSIHEQEVG-LSSKPMRWIGEPQSLL 169
Query: 123 INGKNNY 129
ING+ +
Sbjct: 170 INGRGQF 176
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 71.2 bits (174), Expect = 2e-15
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIE 65
+ +HWHG+ Q+ +P+ DG VTQC I F YKF GT FYH H +Q+ G+
Sbjct: 77 LVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLY 136
Query: 66 GSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNF---PETYL 122
GS I+ + K +D + ++++DW H+ + G L + + ++ L
Sbjct: 137 GSLIVDVAKG-PKERLRYDGEFN---LLLSDWWHESIPSQELG-LSSKPMRWIGEAQSIL 191
Query: 123 INGKNNY 129
ING+ +
Sbjct: 192 INGRGQF 198
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 69.8 bits (171), Expect = 6e-15
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIE 65
++HWHGL MDGV +TQ P Y F GT++YH H Q DG+
Sbjct: 86 TSVHWHGLPVPGE--MDGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQVYDGLA 143
Query: 66 GSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFP-ETYLIN 124
G+ II D+ + D VI+ DWL + + Y G FP +T L+N
Sbjct: 144 GALIIE-----DENSEPLGVDDE-PVILQDDWLDEDGTDLYQ--EGPAMGGFPGDTLLVN 195
Query: 125 GKNN 128
G
Sbjct: 196 GAIL 199
Score = 29.8 bits (67), Expect = 0.41
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73
+ + +F A G + +H HI + +G+ G F +
Sbjct: 410 VAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVPE 451
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant. Members of this protein family
include the copper-containing enzyme laccase (EC
1.10.3.2), often several from a single plant species,
and additional, uncharacterized, closely related plant
proteins termed laccase-like multicopper oxidases. This
protein family shows considerable sequence similarity to
the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases
are enzymes of rather broad specificity, and
classification of all proteins scoring about the trusted
cutoff of this model as laccases may be appropriate.
Length = 539
Score = 64.8 bits (158), Expect = 4e-13
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFP-AVPDGTFFYHSHIALQKMDGI 64
VT+HWHG+ Q + DG ++TQCPI + Y F GT ++H+HI+ + +
Sbjct: 56 VTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRAT-V 114
Query: 65 EGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTG-NFPETYLI 123
G+ +I + P D ++P II+ +W + + +T N + Y I
Sbjct: 115 YGAIVILPKPGVPYPFPKPDREVP---IILGEWWNADVEAVINQANQTGGAPNVSDAYTI 171
Query: 124 NGKNNYVY 131
NG +Y
Sbjct: 172 NGHPGPLY 179
>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type. This
model describes a family of fungal ascorbate oxidases,
within a larger family of multicopper oxidases that also
includes plant ascorbate oxidases (TIGR03388), plant
laccases and laccase-like proteins (TIGR03389), and
related proteins. The member from Acremonium sp. HI-25
is characterized.
Length = 538
Score = 61.8 bits (150), Expect = 4e-12
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQKMDG 63
VT+HWHGL QR PF DG +Q PI F Y+ P G++FYHSH+ Q +
Sbjct: 62 VTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTA 121
Query: 64 IEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTN---TGNFPET 120
G I+ D P + YD +++++D+ +E G L T +G E
Sbjct: 122 -FGPLIVE-----DCEPPPYKYD-DERILLVSDFFSATDEEIEQGLLSTPFTWSGE-TEA 173
Query: 121 YLINGK 126
L+NGK
Sbjct: 174 VLLNGK 179
>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family.
This model represents the CopA copper resistance protein
family. CopA is related to laccase (benzenediol:oxygen
oxidoreductase) and L-ascorbate oxidase, both
copper-containing enzymes. Most members have a typical
TAT (twin-arginine translocation) signal sequence with
an Arg-Arg pair. Twin-arginine translocation is observed
for a large number of periplasmic proteins that cross
the inner membrane with metal-containing cofactors
already bound. The combination of copper-binding sites
and TAT translocation motif suggests a mechansism of
resistance by packaging and export [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 587
Score = 57.2 bits (138), Expect = 2e-10
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 7 TLHWHGLYQRYTPF-MDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIE 65
++HWHG+ PF MDGV V+ I F Y+FP GT++YHSH Q+ G+
Sbjct: 99 SIHWHGIL---LPFQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLY 155
Query: 66 GSFII----REPRSIDKTAPLWDYDLPSHVIIITDW 97
G II +P D+ HV++++DW
Sbjct: 156 GPLIIDPAEPDPVRADR----------EHVVLLSDW 181
>gnl|CDD|177987 PLN02354, PLN02354, copper ion binding / oxidoreductase.
Length = 552
Score = 49.8 bits (119), Expect = 7e-08
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 8 LHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKF-PAVPDGTFFYHSHIALQKMDGIEG 66
L W G+ QR + DGV T CPI T F Y F P G++FY+ + + G G
Sbjct: 82 LTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFG 140
Query: 67 SFIIREPRSIDKTAPLWDYDLPS--HVIIITDWLHDMTDEKYPGFLRTNTG-NFPETYLI 123
+ I P+ Y P + ++I DW + + FL + P+ LI
Sbjct: 141 GLRVNSRLLI----PV-PYADPEDDYTVLIGDW-YTKSHTALKKFLDSGRTLGRPDGVLI 194
Query: 124 NGKN 127
NGK+
Sbjct: 195 NGKS 198
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 47.3 bits (112), Expect = 4e-07
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 10 WHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQKMDGIEGS 67
W+GL R + DGV+ T CPIL T + Y+F V D G++FY + LQK G G+
Sbjct: 83 WNGLQLRKNSWQDGVR-GTNCPILPGTNWTYRF-QVKDQIGSYFYFPSLLLQKAAGGYGA 140
Query: 68 FIIREPRSIDKTAPLWDYDLPSHVIIITDWLH-DMTDEKYPGFLRTNTG-NFPETYLING 125
I P + P D + I+I DW + D T + L P+ L NG
Sbjct: 141 IRIYNPELVPVPFPKPDEEYD---ILIGDWFYADHTVMR--ASLDNGHSLPNPDGILFNG 195
Query: 126 K 126
+
Sbjct: 196 R 196
>gnl|CDD|178429 PLN02835, PLN02835, oxidoreductase.
Length = 539
Score = 45.7 bits (108), Expect = 2e-06
Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 8 LHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD-GTFFYHSHIALQKMDGIEG 66
L W+G+ QR + DGV T CPI N+ + YKF GTF Y K G G
Sbjct: 84 LTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFG 142
Query: 67 SFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGN---FPETYLI 123
+ + E I PL D D +++ DW T K R ++G FP+ LI
Sbjct: 143 AINVYERPRIPIPFPLPDGDF---TLLVGDWYK--TSHKTLQ-QRLDSGKVLPFPDGVLI 196
Query: 124 NGK 126
NG+
Sbjct: 197 NGQ 199
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 42.7 bits (100), Expect = 2e-05
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 8 LHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQKMDGIE 65
L W+G++ R + DGV + T CPI + Y F V D G++FY +A+QK G
Sbjct: 71 LSWNGVHMRKNSYQDGV-YGTTCPIPPGKNYTYDF-QVKDQVGSYFYFPSLAVQKAAGGY 128
Query: 66 GSF-IIREPR-SIDKTAPLWDYDLPSHVIIITDWL-HDMTDEKYPGFLRTNTGNFPETYL 122
GS I PR + P D+ +I DW + T K P+ +
Sbjct: 129 GSLRIYSLPRIPVPFPEPAGDF-----TFLIGDWYRRNHTTLKKILDGGRKLPLMPDGVM 183
Query: 123 INGKN-NYVY 131
ING+ +YVY
Sbjct: 184 INGQGVSYVY 193
>gnl|CDD|165622 PLN00044, PLN00044, multi-copper oxidase-related protein;
Provisional.
Length = 596
Score = 38.5 bits (89), Expect = 5e-04
Identities = 36/126 (28%), Positives = 47/126 (37%), Gaps = 6/126 (4%)
Query: 8 LHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQKMDGIE 65
L WHG+ QR + + DGV T C I + Y+F V D G+FFY AL + G
Sbjct: 84 LTWHGVQQRKSAWQDGV-GGTNCAIPAGWNWTYQF-QVKDQVGSFFYAPSTALHRAAGGY 141
Query: 66 GSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLING 125
G+ I I D + I DW + P+ LIN
Sbjct: 142 GAITINNRDVIPIPFGFPDGG--DITLFIADWYARDHRALRRALDAGDLLGAPDGVLINA 199
Query: 126 KNNYVY 131
Y Y
Sbjct: 200 FGPYQY 205
>gnl|CDD|215896 pfam00394, Cu-oxidase, Multicopper oxidase. Many of the proteins
in this family contain multiple similar copies of this
plastocyanin-like domain.
Length = 146
Score = 29.6 bits (67), Expect = 0.36
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 89 SHVIIITDWLHDMTDEKYPGFLRT--NTGNFPET---YLINGKNN 128
+VI ++DW H + L + +FP LINGK+
Sbjct: 2 DYVITLSDWYHKDAKDLEKELLASGKAPTDFPPVPDAVLINGKDG 46
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one LDL-receptor
class A domain, one C-type lectin family domain, and
16-18 putative TMSs in positions between residues 2200
and 4100. Polycystin-L has been shown to be a cation
(Na+, K+ and Ca2+) channel that is activated by Ca2+. Two
members of the PCC family (polycystin 1 and 2) are
mutated in autosomal dominant polycystic kidney disease,
and polycystin-L is deleted in mice with renal and
retinal defects. Note: this model is restricted to the
amino half for technical reasons.
Length = 2740
Score = 30.1 bits (67), Expect = 0.42
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 65 EGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLR 111
G+ I +SI T P D + WLHD+ K G L
Sbjct: 2571 LGAAIRALNKSIAITLP----DPNGEASGLPHWLHDLIASKLKGLLD 2613
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 29.6 bits (67), Expect = 0.59
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDG-VQFVTQCPILHNTKFRYKF-PAVPDGTFFYHSHI--- 56
+ + TLHWHGL + G V Q I K F P T ++H H
Sbjct: 95 LPEETTLHWHGL------EVPGEVDGGPQGIIAPGGKRTVTFTVDQPAATCWFHPHQHGK 148
Query: 57 -ALQKMDGIEGSFIIREPRS 75
Q G+ G +I + S
Sbjct: 149 TGRQVAMGLAGLVLIEDDES 168
>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples
receptors (GPCRs), membrane bound guanylyl cyclases such
as the family of natriuretic peptide receptors (NPRs),
and the N-terminal leucine/isoleucine/valine- binding
protein (LIVBP)-like domain of the ionotropic glutamate
receptors. This CD represents the ligand-binding domain
of the family C G-protein couples receptors (GPCRs),
membrane bound guanylyl cyclases such as the family of
natriuretic peptide receptors (NPRs), and the N-terminal
leucine/isoleucine/valine- binding protein (LIVBP)-like
domain of the ionotropic glutamate receptors, all of
which are structurally similar and related to the
periplasmic-binding fold type I family. The family C
GPCRs consist of metabotropic glutamate receptor (mGluR)
receptors, a calcium-sensing receptor (CaSR),
gamma-aminobutyric receptors (GABAb), the promiscuous
L-alpha-amino acid receptor GPR6A, families of taste and
pheromone receptors, and orphan receptors. Truncated
splicing variants of the orphan receptors are not
included in this CD. The family C GPCRs are activated by
endogenous agonists such as amino acids, ions, and sugar
based molecules. Their amino terminal ligand-binding
region is homologous to the bacterial
leucine-isoleucine-valine binding protein (LIVBP) and a
leucine binding protein (LBP). The ionotropic glutamate
receptors (iGluRs) have an integral ion channel and are
subdivided into three major groups based on their
pharmacology and structural similarities: NMDA
receptors, AMPA receptors, and kainate receptors. The
family of membrane bound guanylyl cyclases is further
divided into three subfamilies: the ANP receptor
(GC-A)/C-type natriuretic peptide receptor (GC-B), the
heat-stable enterotoxin receptor (GC-C)/sensory organ
specific membrane GCs such as retinal receptors (GC-E,
GC-F), and olfactory receptors (GC-D and GC-G).
Length = 298
Score = 26.7 bits (59), Expect = 5.2
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 90 HVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLI 123
H II WL D + + N F E L+
Sbjct: 225 HWIITDLWLTSCLDLELLEYFPGNLTGFGEAALV 258
>gnl|CDD|205867 pfam13691, Lactamase_B_4, Family description. This is family of
tRNase Z enzymes, that are closely related structurally
to the Lactamase_B family members. tRNase Z is the
endonuclease that is involved in tRNA 3'-end maturation
through removal of the 3'-trailer sequences from tRNA
precursors. The fission yeast Schizosaccharomyces pombe
contains two candidate tRNase Zs encoded by two
essential genes. The first is targeted to the nucleus
and has an SV40 nuclear localisation signal at its
N-terminus, consisting of four consecutive arginine and
lysine residues between residues 208 and 211 (KKRK)
that is critical for the NLS function. The second is
targeted to the mitochondria, with an N-terminal
mitochondrial targeting signal within the first 38
residues.
Length = 63
Score = 24.8 bits (55), Expect = 5.8
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 28 TQCP--ILHNTKFRYKFPAVPDGT--FFYHSHIALQKMDGI 64
T P +LH RY F V +GT + L K++ I
Sbjct: 10 TPGPLLLLHFDSKRYLFGNVGEGTQRALNERKVRLSKLEDI 50
>gnl|CDD|179711 PRK04017, PRK04017, hypothetical protein; Provisional.
Length = 132
Score = 25.7 bits (57), Expect = 6.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 56 IALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDW 97
+L+K+ G+EG I + + A L VII+TD+
Sbjct: 35 ESLRKL-GVEGEIIKVSRTPLAEIAELIAS-RGKEVIILTDF 74
>gnl|CDD|233580 TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal
AROM-type. This model represents a clade of
shikimate-5-dehydrogenases found in Corynebacterium,
Mycobacteria and fungi. The fungal sequences are
pentafunctional proteins known as AroM which contain the
central five seven steps in the chorismate biosynthesis
pathway. The Corynebacterium and Mycobacterial sequences
represent the sole shikimate-5-dehydrogenases in species
which otherwise have every enzyme of the chorismate
biosynthesis pathway [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 282
Score = 25.6 bits (56), Expect = 9.1
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 63 GIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKY 106
G+ +I R+ DK + L D + VI + +
Sbjct: 148 GVTDITVIN--RNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEK 189
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.142 0.468
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,459,452
Number of extensions: 665079
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 34
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)