RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6774
(140 letters)
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 143 bits (364), Expect = 6e-42
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M ++HWHG +Q+ T + DG F+TQCPI+ F Y F VP GT++YHSH+ Q
Sbjct: 58 MLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFN-VPGMAGTYWYHSHLTTQ 116
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPE 119
DG+ G F++ +P D A L+D D + +I + DW H + E G +
Sbjct: 117 YCDGLRGPFVVYDPN--DPDANLYDVDDDTTIITLADWYHVLAKEMGAGGA-----ITAD 169
Query: 120 TYLINGKNNYVY 131
+ LI+G
Sbjct: 170 STLIDGLGRTHV 181
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 144 bits (365), Expect = 6e-42
Identities = 52/133 (39%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIAL 58
M + ++HWHG +Q T MDG FV QCPI+ N F Y F VP GT++YHSH++
Sbjct: 77 NMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFV-VPGQAGTYWYHSHLST 135
Query: 59 QKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFP 118
Q DG+ G+F++ +P D L+D D S VI I DW H ++ +P P
Sbjct: 136 QYCDGLRGAFVVYDPN--DPHLSLYDVDDASTVITIADWYHSLSTVLFPNP--NKAPPAP 191
Query: 119 ETYLINGKNNYVY 131
+T LING
Sbjct: 192 DTTLINGLGRNSA 204
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 142 bits (361), Expect = 3e-41
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK 60
+ + V +HWHG+ QR TP+ DG ++QC I F Y F GTFFYH H+ +Q+
Sbjct: 52 LHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQR 111
Query: 61 MDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLR--TNTGNFP 118
G+ GS I+ P + YD ++++DW H ++ G P
Sbjct: 112 SAGLYGSLIVDPP---QGKKEPFHYD-GEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEP 167
Query: 119 ETYLINGKNNY 129
+T L+NG+ +
Sbjct: 168 QTILLNGRGQF 178
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 138 bits (351), Expect = 5e-40
Identities = 48/131 (36%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIAL 58
M K+ ++HWHG +Q T + DG F+ QCPI F Y F VPD GTF+YHSH++
Sbjct: 56 TMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDFQ-VPDQAGTFWYHSHLST 114
Query: 59 QKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFP 118
Q DG+ G F++ +P D A +D D VI + DW H
Sbjct: 115 QYCDGLRGPFVVYDPN--DPHASRYDVDNDDTVITLADWYHTAAKLGPRFP------GGA 166
Query: 119 ETYLINGKNNY 129
+ LINGK
Sbjct: 167 DATLINGKGRA 177
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 139 bits (351), Expect = 7e-40
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHN-TKFRYKFPAVPDGTFFYHSHIALQ 59
++ ++HWHG+ Q+ T DG VT+CPI + Y++ A GT +YHSH + Q
Sbjct: 85 LVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQ 144
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPE 119
+G+ G+ I P S+ YD+ V ITD+ + D+ F + N F +
Sbjct: 145 YGNGVVGTIQINGPASL-------PYDIDLGVFPITDYYYRAADDLVH-FTQNNAPPFSD 196
Query: 120 TYLINGKNNYVYVSNN 135
LING
Sbjct: 197 NVLINGTAVNPNTGEG 212
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 137 bits (347), Expect = 2e-39
Identities = 49/137 (35%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIAL 58
M + ++HWHGL+QR T + DG V QCPI F YKF GTF+YHSH
Sbjct: 56 TMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFT-PAGHAGTFWYHSHFGT 114
Query: 59 QKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFP 118
Q DG+ G +I + D A L+D D + +I + DW H P
Sbjct: 115 QYCDGLRGPMVIYDDN--DPHAALYDEDDENTIITLADWYHIPAPS-------IQGAAQP 165
Query: 119 ETYLINGKNNYVYVSNN 135
+ LINGK YV
Sbjct: 166 DATLINGKGRYVGGPAA 182
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 137 bits (348), Expect = 2e-39
Identities = 46/129 (35%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK 60
+ ++HWHG+ Q + DGV VTQCPI YKF GT +YHSH +LQ
Sbjct: 116 LEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFSLQY 175
Query: 61 MDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPET 120
DG+ G II P + DYD VI + DW H+ E + R E
Sbjct: 176 GDGLFGPLIINGPATA-------DYDEDVGVIFLQDWAHESVFEIWDT-ARLGAPPALEN 227
Query: 121 YLINGKNNY 129
L+NG N +
Sbjct: 228 TLMNGTNTF 236
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 134 bits (340), Expect = 2e-38
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVP-DGTFFYHSHIALQ 59
M ++H+HGL+Q T MDGV F+TQCPI + Y F GT++YHSH Q
Sbjct: 52 MNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQ 111
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGN--- 116
DG++G FII++ + +DYD + +++W HD+ + F+
Sbjct: 112 YEDGMKGLFIIKDD------SFPYDYDE-ELSLSLSEWYHDLVTDLTKSFMSVYNPTGAE 164
Query: 117 -FPETYLINGKNNYV 130
P+ ++N N
Sbjct: 165 PIPQNLIVNNTMNLT 179
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 123 bits (310), Expect = 2e-35
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK---MD 62
T+HWHG+ QR T DGV TQ I F YKF A P GT +YH H+ + + M
Sbjct: 56 HTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMR 115
Query: 63 GIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYL 122
G+ G I+ EP++ D ++++++DW+ ++ G + + ++ Y
Sbjct: 116 GMWGPLIV-EPKNPLPIEKTVTKD---YILMLSDWVSSWANKPGEGGIPGDVFDY---YT 168
Query: 123 INGKNNY 129
IN K+
Sbjct: 169 INAKSFP 175
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 118 bits (297), Expect = 3e-33
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK---MD 62
T+HWHG++Q+ T DGV VTQ PI + YKF A GT +YH H+ + + +
Sbjct: 57 HTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVR 116
Query: 63 GIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYL 122
G+ G I+ +P+ D +++++ W + D+ G N ++ +
Sbjct: 117 GMWGPLIV-DPKQPLPIEKRVTKD---VIMMMSTWESAVADKYGEGGTPMNVADY---FS 169
Query: 123 INGKNNYVY 131
+N K+ +
Sbjct: 170 VNAKSFPLT 178
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 91.0 bits (226), Expect = 1e-22
Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 5 TVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD---GTFFYHSH----IA 57
LHWHGL +P +D I + Y+F VP GTF+YH H +A
Sbjct: 68 PTNLHWHGLPI--SPKVDDPF----LEIPPGESWTYEFT-VPKELAGTFWYHPHLHGRVA 120
Query: 58 LQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNF 117
Q G+ G+ ++ A + H++++ D + G
Sbjct: 121 PQLFAGLLGALVVESSLD----AIPELREAEEHLLVLKDLALQGGRPAPHTPMDWMNGKE 176
Query: 118 PETYLINGKNNYVYV 132
+ L+NG V
Sbjct: 177 GDLVLVNGALRPTLV 191
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 85.4 bits (211), Expect = 1e-20
Identities = 29/135 (21%), Positives = 44/135 (32%), Gaps = 17/135 (12%)
Query: 5 TVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHI----AL 58
+HWHG D I + Y F V + GT+ YH H A
Sbjct: 59 PTIVHWHGFDVN--WHNDA---HPSFAITPGESYNYSFD-VVNRAGTYLYHPHPHGLTAK 112
Query: 59 QKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDE-KYPGFLRTNTGNF 117
Q G G I+ + S + Y + ++I+D P + G
Sbjct: 113 QFYMGQLGLVIVEDSGS----DLGFKYGVNDLPLVISDRRFIGGAPVYNPTPMEMIAGFL 168
Query: 118 PETYLINGKNNYVYV 132
L+NG + V+
Sbjct: 169 GNAVLVNGVKDAVFK 183
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco
metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A
{Myrothecium verrucaria} PDB: 2xll_A*
Length = 534
Score = 80.4 bits (198), Expect = 7e-19
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 16/135 (11%)
Query: 5 TVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD-GTFFYHSH----IALQ 59
++H HG + R DG + + Y +P T +YH H A
Sbjct: 90 PNSVHLHGSFSR--AAFDGW---AEDITEPGSFKDYYYPNRQSARTLWYHDHAMHITAEN 144
Query: 60 KMDGIEGSFIIREPRSIDKTAPLW--DYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNF 117
G G +++ +P P ++D+P +I+T + N +
Sbjct: 145 AYRGQAGLYMLTDPAEDALNLPSGYGEFDIP---MILTSKQYTANGNLVTTNGELN-SFW 200
Query: 118 PETYLINGKNNYVYV 132
+ +NG+
Sbjct: 201 GDVIHVNGQPWPFKN 215
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 78.4 bits (193), Expect = 4e-18
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 19/129 (14%)
Query: 5 TVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHI----AL 58
T+HWHG+ P DG PIL + Y+F D GT++YH H +
Sbjct: 103 ATTIHWHGVPVP--PDQDGS---PHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASK 157
Query: 59 QKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDW-LHDMTDEKYPGFLRTNTGNF 117
Q G+ G+F+I+ + A + ++I+D L + G
Sbjct: 158 QVFMGLAGAFVIKAKKD----ALSHLKEKD---LMISDLRLDENAQIPNNNLNDWLNGRE 210
Query: 118 PETYLINGK 126
E LING+
Sbjct: 211 GEFVLINGQ 219
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A
{Arthrobacter SP}
Length = 288
Score = 74.8 bits (184), Expect = 3e-17
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 26/128 (20%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH---IALQKMDG 63
T+H+HG+++ MDG + I F Y+F A P GT YH H +A G
Sbjct: 89 TIHFHGVHR---ATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145
Query: 64 IEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLI 123
+ G FI+ P D + V+++ + D D+ E Y +
Sbjct: 146 LYGGFIVEPKEG----RPPADDE---MVMVMNGYNTDGGDD-------------NEFYSV 185
Query: 124 NGKNNYVY 131
NG +
Sbjct: 186 NGLPFHFM 193
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 71.5 bits (175), Expect = 1e-15
Identities = 29/130 (22%), Positives = 41/130 (31%), Gaps = 13/130 (10%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAV-PDGTFFYHSHI----ALQK 60
TLHWHGL +DG Q I K P T ++H H Q
Sbjct: 70 TTLHWHGLEVP--GEVDGG---PQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQV 124
Query: 61 MDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTN--TGNFP 118
G+ G +I + K + + +I+ D + G F
Sbjct: 125 AMGLAGLVVIEDDEI-LKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFG 183
Query: 119 ETYLINGKNN 128
+T L NG
Sbjct: 184 DTLLTNGAIY 193
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 66.9 bits (163), Expect = 4e-14
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 12/127 (9%)
Query: 5 TVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD-GTFFYHSHI----ALQ 59
V++ GL + G + N + P + T +YH++ A Q
Sbjct: 71 NVSMTVAGLQVP--GPLMGG---PARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQ 125
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPE 119
+G+ G +++ + S P Y + +II D D + G +
Sbjct: 126 VYNGLAGMWLVEDEVSKSLPIPN-HYGVDDFPVIIQDKRLDNFGTPEYNEPGSG-GFVGD 183
Query: 120 TYLINGK 126
T L+NG
Sbjct: 184 TLLVNGV 190
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 66.3 bits (161), Expect = 7e-14
Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 26/141 (18%)
Query: 7 TLHWHGLYQRYTPFMDGV--QFVTQCPIL---HNTKFRYKFPAV-PDGTFFYHSHI---- 56
+H HG DG + ++ + + Y +P +YH H
Sbjct: 103 VVHLHGGVTP--DDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALT 160
Query: 57 ALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHD-----------MTDEK 105
L G+ G++II +P+ P +YD+P ++ITD +
Sbjct: 161 RLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLITDRTINEDGSLFYPSAPENPSP 217
Query: 106 YPGFLRTNTGNFPETYLINGK 126
ET L+NGK
Sbjct: 218 SLPNPSIVPAFCGETILVNGK 238
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A
{Streptomyces coelicolor}
Length = 343
Score = 62.8 bits (152), Expect = 1e-12
Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 25/142 (17%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-------------VPDGTFFY 52
+LH HGL Y DG + + + Y + G + Y
Sbjct: 99 ASLHVHGL--DYEISSDGTA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHY 155
Query: 53 HSHIALQKMD------GIEGSFIIREPRSIDKTA---PLWDYDLPSHVIIITDWLHDMTD 103
H H+ + G+ G I+R + A +++ ++ T + T
Sbjct: 156 HDHVVGTEHGTGGIRNGLYGPVIVRRKGDVLPDATHTIVFNDMTINNRKPHTGPDFEATV 215
Query: 104 EKYPGFLRTNTGNFPETYLING 125
+ G + T+ ++G
Sbjct: 216 GDRVEIVMITHGEYYHTFHMHG 237
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 59.6 bits (144), Expect = 1e-11
Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 31/150 (20%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-------------VPD 47
M +LH HGL Y DG + + + Y +
Sbjct: 53 TMDVRASLHVHGL--DYEISSDGTA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSA 109
Query: 48 GTFFYHSHIALQKM------DGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITD----- 96
G + YH H+ + +G+ G I+R + P + + + + I +
Sbjct: 110 GYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDVL---PDATHTIVFNDMTINNRKPHT 166
Query: 97 -WLHDMTDEKYPGFLRTNTGNFPETYLING 125
+ T + G + T+ ++G
Sbjct: 167 GPDFEATVGDRVEIVMITHGEYYHTFHMHG 196
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 59.9 bits (145), Expect = 1e-11
Identities = 16/126 (12%), Positives = 35/126 (27%), Gaps = 20/126 (15%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH---IALQKMDG 63
+ H + + F A+ G + YH + + +G
Sbjct: 85 NIDLHAV-------TGPGGGAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANG 137
Query: 64 IEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHD---MTDEKYPGFLRTNTGNFPET 120
+ G ++ EP+ L D + ++ D+ P + +
Sbjct: 138 MYGLILV-EPK-----EGLAPVD-REYYLVQGDFYTKGEFGEAGLQPFDMAKAIDEDADY 190
Query: 121 YLINGK 126
+ NG
Sbjct: 191 VVFNGS 196
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 58.8 bits (141), Expect = 3e-11
Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 30/144 (20%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAV-PDGTFFYHSHI----ALQKM 61
H HG DG + ++P ++YH H M
Sbjct: 129 VTHLHGAQTG--GGNDGW---ADNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVM 183
Query: 62 DGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHD-----------------MTDE 104
G+ G++++R+ P D ++P ++I D D +
Sbjct: 184 AGLYGTYLVRDDEEDALGLPSGDREIP---LLIADRNLDTDEDGRLNGRLLHKTVIVQQS 240
Query: 105 KYPGFLRTNTGNFPETYLINGKNN 128
+ F +NG+
Sbjct: 241 NPETGKPVSIPFFGPYTTVNGRIW 264
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 57.0 bits (136), Expect = 1e-10
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 1 MMGKTVTLHWHGLYQR----YTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--------- 47
+ ++ HG+ GV+ + PIL F+YK+ +
Sbjct: 469 QASRPYNIYPHGITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPR 528
Query: 48 -GTFFYHSHIAL--QKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVI 92
T +Y S + + G+ G +I S+D+ D + ++
Sbjct: 529 CLTRYYSSFVNMERDLASGLIGPLLICYKESVDQRGNQIMSDKRNVIL 576
Score = 55.8 bits (133), Expect = 3e-10
Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 18/156 (11%)
Query: 1 MMGKTVTLHWHGLYQRY----TPFMDGVQFVTQC--PILHNTKFRYKFPAVPD------- 47
M V+LH G+ + D + + Y + + +
Sbjct: 92 MASHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFPGGSHTYVWQVLKENGPMASD 151
Query: 48 ---GTFFYHSHI--ALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMT 102
T+ Y SH+ G+ G+ ++ S+ K + + + +
Sbjct: 152 PLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKTQTLHKFILLFAVFDEGKSWHS 211
Query: 103 DEKYPGFLRTNTGNFPETYLINGKNNYVYVSNNYIY 138
+ K + + ++ N YV S +
Sbjct: 212 ETKNSLMQDRDAASARAWPKMHTVNGYVNRSLPGLI 247
Score = 31.1 bits (69), Expect = 0.11
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 5/102 (4%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEG 66
++ G + P T + + G F HI+ + DG+E
Sbjct: 269 SIFLEGHTFLVRNHRQAS--LEISP---ITFLTAQTLLMDLGQFLLFCHISSHQHDGMEA 323
Query: 67 SFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPG 108
+ + + + + +TD D+
Sbjct: 324 YVKVDSCPEEPQLRMKNNEEAEDYDDDLTDSEMDVVRFDDDN 365
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 54.5 bits (131), Expect = 8e-10
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 14/123 (11%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH---IALQKMDG 63
++ +HG G TQ + F A+ G + YH + +G
Sbjct: 220 SVDFHGATG-----PGGAAAFTQ--TDPGEETVVTFKALIPGIYVYHCATPSVPTHITNG 272
Query: 64 IEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLI 123
+ G ++ EP Y + + + + + E+ + + PE +L
Sbjct: 273 MYGLLLV-EPEGGLPQVDREFYVMQGEIYTVKSF--GTSGEQEMDYEKLINEK-PEYFLF 328
Query: 124 NGK 126
NG
Sbjct: 329 NGS 331
Score = 29.9 bits (67), Expect = 0.24
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 9 HWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSF 68
H + +D + N + F A G F Y+ IA + G+EG+
Sbjct: 75 AQHDVV------VDQYAARSAIVNGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNI 128
Query: 69 IIREPRSIDKTAP 81
+ + +
Sbjct: 129 QVLPGNRAEMKSS 141
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 54.4 bits (130), Expect = 9e-10
Identities = 15/127 (11%), Positives = 43/127 (33%), Gaps = 23/127 (18%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGV--------QFVTQCPILHNTKFRYKFPAVPD----- 47
K +++H G+ +Y+ F +G + ++ Y++
Sbjct: 77 KAHKPLSIHAQGI--KYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTH 134
Query: 48 -----GTFFYHSHI--ALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHD 100
T Y+S++ G+ G +I + ++ + ++ HV++ +
Sbjct: 135 DDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTEDGTQKMFE-KQHVLMFAVFDES 193
Query: 101 MTDEKYP 107
+ +
Sbjct: 194 KSWNQTS 200
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism,
glycoprotein, multi-copper oxidase; HET: NAG; 2.80A
{Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1kcw_A*
Length = 1065
Score = 53.0 bits (126), Expect = 3e-09
Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 24/159 (15%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQF--------VTQCPILHNTKFRYKFPAVPDG---- 48
+ + T H HG+ +G + + ++ Y A +
Sbjct: 112 LASRPYTFHSHGITYYKE--HEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGE 169
Query: 49 ------TFFYHSHIAL--QKMDGIEGSFIIREPRSIDKTAPL-WDYDLPSHVIIITDWLH 99
T YHSHI G+ G II + S+DK D + ++ +
Sbjct: 170 GDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFS 229
Query: 100 DMTDEKYPGFLRTNTGNFPETYLINGKNNYVYVSNNYIY 138
++ + + N V N Y +
Sbjct: 230 WYLEDNIKTYCSEPEKVDKDNEDFQQSNRMYSV-NGYTF 267
Score = 48.0 bits (113), Expect = 2e-07
Identities = 17/150 (11%), Positives = 43/150 (28%), Gaps = 22/150 (14%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD----------GTF 50
M + ++H HG+ + T P L Y + +
Sbjct: 827 MATRPYSIHAHGVQ---------TESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPW 877
Query: 51 FYHSHI--ALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPG 108
Y+S + G+ G I+ + P + + + ++ D +
Sbjct: 878 AYYSTVDQVKDLYSGLIGPLIVCRRPYLKVFNPRRKLEF-ALLFLVFDENESWYLDDNIK 936
Query: 109 FLRTNTGNFPETYLINGKNNYVYVSNNYIY 138
+ + ++N ++ N ++
Sbjct: 937 TYSDHPEKVNKDDEEFIESNKMHAINGRMF 966
Score = 44.6 bits (104), Expect = 2e-06
Identities = 18/155 (11%), Positives = 42/155 (27%), Gaps = 23/155 (14%)
Query: 7 TLHWHGL----------YQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDG-------- 48
++ G+ Y + + F Y++ +
Sbjct: 474 SIEPIGVRFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPV 533
Query: 49 --TFFYHSHI--ALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVII-ITDWLHDMTD 103
Y+S + G+ G I + S+ D D ++ + D +
Sbjct: 534 CLAKMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLL 593
Query: 104 EKYPGFLRTNTGNFPETYLINGKNNYVYVSNNYIY 138
E T + ++N ++ N ++Y
Sbjct: 594 EDNIRMFTTAPDQVDKEDEDFQESNKMHSMNGFMY 628
Score = 29.9 bits (66), Expect = 0.30
Identities = 8/106 (7%), Positives = 27/106 (25%), Gaps = 6/106 (5%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK 60
+++ G ++ + + T +GTF
Sbjct: 651 NEADVHGIYFSGN-----TYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHY 705
Query: 61 MDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKY 106
G++ + + + ++ I + D + ++
Sbjct: 706 TGGMKQKYTV-NQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQRE 750
Score = 26.1 bits (56), Expect = 6.1
Identities = 6/62 (9%), Positives = 17/62 (27%)
Query: 48 GTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYP 107
G + G++ F ++E + + + I + + +
Sbjct: 332 GEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDNIRGKHVRHYYIAAEEIIWNYAPSGID 391
Query: 108 GF 109
F
Sbjct: 392 IF 393
Score = 25.7 bits (55), Expect = 6.9
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEG 66
T+H+HG +Y GV I T + G + H H+ G+E
Sbjct: 995 TVHFHGHSFQYKH--RGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMET 1052
Query: 67 SFIIREP 73
++ + +
Sbjct: 1053 TYTVLQN 1059
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-],
oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP:
b.6.1.3 b.6.1.3 PDB: 1kbw_A
Length = 327
Score = 51.4 bits (123), Expect = 8e-09
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 17/130 (13%)
Query: 5 TVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH---IALQKM 61
+ H + + F A+ G + YH + +
Sbjct: 90 STVPHNVDFH----AATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIA 145
Query: 62 DGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWL---HDMTDEKYPGFLRTNTGNFP 118
+G+ G ++ L D I+ D+ P + P
Sbjct: 146 NGMYGLILVEPKE------GLPKVD-KEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQP 198
Query: 119 ETYLINGKNN 128
E + NG
Sbjct: 199 EYVVFNGHVG 208
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 46.7 bits (111), Expect = 4e-07
Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 19/136 (13%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH----IALQKMD 62
H + + + + + +F A GTF YH + +
Sbjct: 85 NAMPHNV--DFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 63 GIEGSFIIREPRSIDKTAPLWDYDL-PSHVIIITDW-----------LHDMTDEKYPGFL 110
G+ G+ ++ PR K ++ I D + E Y +
Sbjct: 143 GMSGTLMV-LPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTV 201
Query: 111 RTNTGNFPETYLINGK 126
+ P + NGK
Sbjct: 202 QVMRTLTPSHIVFNGK 217
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 46.4 bits (110), Expect = 5e-07
Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 10/135 (7%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH----IALQKMD 62
H + + + + + +F A G F YH +
Sbjct: 91 NTLLHNI--DFHAATGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS 148
Query: 63 GIEGSFII--REPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPET 120
G+ G+ ++ R+ +K PL YD +V ++ Y + T + +
Sbjct: 149 GMNGAIMVLPRDGLKDEKGQPL-TYDKIYYVGEQDFYVPKDEAGNYKKY-ETPGEAYEDA 206
Query: 121 YLINGKNNYVYVSNN 135
++ N
Sbjct: 207 VKAMRTLTPTHIVFN 221
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 44.4 bits (104), Expect = 3e-06
Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 24/153 (15%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTK--------FRYKFPAVPD----- 47
+ + +LH HGL Y +G + P + Y + A
Sbjct: 86 LASRPYSLHAHGL--SYEKSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPEN 143
Query: 48 -----GTFFYHSHI--ALQKMDGIEGSFIIREPRSIDK--TAPLWDYDLPSHVIIITDWL 98
+ Y+S + G+ G +I ++DK P+ + ++ +
Sbjct: 144 PGSACRAWAYYSAVNPEKDIHSGLIGPLLICRKGTLDKETNMPVDMREFVLLFMVFDEKK 203
Query: 99 HDMTDEKYPGFLRTNTGNFPETYLINGKNNYVY 131
D+K R + ++ + N +Y
Sbjct: 204 SWYYDKKPTRSWRRASSEVKNSHEFHAINGMIY 236
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 38.3 bits (89), Expect = 3e-04
Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 13/85 (15%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH-----IALQKM 61
+ +H + I K +F A G F YH I +
Sbjct: 89 NIDFHA-------ATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141
Query: 62 DGIEGSFIIREPRSIDKTAPLWDYD 86
G+ G ++ PR K
Sbjct: 142 SGMAGCIMV-LPRDGLKDHEGKPVR 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.001
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 21/104 (20%)
Query: 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHV 91
L + + VP +FF A Q + F P + T D P+
Sbjct: 10 TLSHGSLEHVLL-VPTASFFI----ASQLQE----QFNKILP---EPTEGFAADDEPTTP 57
Query: 92 I--------IITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKN 127
++ + ++ L F YL G +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL-EGND 100
Score = 28.9 bits (64), Expect = 0.60
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 12/52 (23%)
Query: 88 PSHVIIITDWLHDMTDEKYPGFLR-TNTGNFPET-----YLINGKNNYVYVS 133
PS ++ I++ +T E+ ++ TN+ + P L+NG N V VS
Sbjct: 335 PSPMLSISN----LTQEQVQDYVNKTNS-HLPAGKQVEISLVNGAKNLV-VS 380
Score = 26.6 bits (58), Expect = 3.4
Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 49/113 (43%)
Query: 13 LYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIRE 72
LYQ Y + G S L + +IR
Sbjct: 176 LYQTYHVLV--------------------------GDLIKFSAETLSE--------LIRT 201
Query: 73 PRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPG--FLRTNTGNFPETYLI 123
+K + I +WL + P +L + + P LI
Sbjct: 202 TLDAEKVFT--------QGLNILEWLEN--PSNTPDKDYLLSIPISCP---LI 241
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.001
Identities = 25/169 (14%), Positives = 49/169 (28%), Gaps = 42/169 (24%)
Query: 3 GKTVTLHWHGLYQRYTPFMDGV-----QFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIA 57
K T+ +Y ++ V I P D F+ SHI
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY--SHIG 478
Query: 58 --LQKMDGIEGSFIIRE--------PRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYP 107
L+ ++ E + R + I + W+ I + L + + Y
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS-----ILNTLQQL--KFYK 531
Query: 108 GFLRTNTGNF-------------PETYLINGKN-NYVYVS----NNYIY 138
++ N + E LI K + + ++ + I+
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 28.3 bits (62), Expect = 1.1
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 36/106 (33%)
Query: 21 MDGVQ-------FVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIRE- 72
+ VQ F C IL T+F+ + T +HI+L D + E
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISL---DHHSMTLTPDEV 303
Query: 73 ---------------PRSIDKTAPLWDYDLPSHVIIITDWLHDMTD 103
PR + T P + II + + D
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPR-------RLSIIAESIRDGLA 342
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 29.9 bits (68), Expect = 0.28
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 3 GKTVTLHWHGLYQRYTPFMDGVQ------FVTQCPILHNTKFRYKFPAVPDGT 49
GKTVT+ + Q+ P D ++ F+ + +L+N K RY + +
Sbjct: 66 GKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYS 118
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue
protein, electron transport, metal- binding,
periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB:
1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Length = 154
Score = 28.3 bits (62), Expect = 0.70
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHN---TKFRYKFPAVPDGTFFYHSHIAL 58
G + + G P +D + T + + GT++Y I
Sbjct: 82 FGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPG 141
Query: 59 QKMDGIEGSFIIR 71
G+ G +++
Sbjct: 142 MAATGMFGKIVVK 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.1
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 4/23 (17%)
Query: 59 QKMDGIEGSFIIREPRSIDKTAP 81
Q + ++ S + S AP
Sbjct: 20 QALKKLQASLKLYADDS----AP 38
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 3 GKTVTLHWHGLYQRYTPFMDGVQ------FVTQCPILHNTKFRYK 41
G+ + QR DGV+ ++ + + HN + RY
Sbjct: 67 GQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYN 111
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 27.2 bits (61), Expect = 2.1
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 3 GKTVTLHWHGLYQRYTPFMDGVQ------FVTQCPILHNTKFRYK 41
G+ + QR DGV+ ++ + + HN + RY
Sbjct: 67 GQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYN 111
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket,
two component system; 1.90A {Bacillus subtilis} SCOP:
c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A
1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Length = 124
Score = 26.3 bits (59), Expect = 2.2
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 12/40 (30%)
Query: 56 IALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIIT 95
+ + MDGIE I++ + ID+ VII+T
Sbjct: 55 MKIPGMDGIE---ILKRMKVIDENIR---------VIIMT 82
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 26.5 bits (59), Expect = 3.3
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 3 GKTVTLHWHGLYQRYTPFMDGVQ------FVTQCPILHNTKFRYK 41
T T+ + P + ++ ++ + +L+N + RY
Sbjct: 64 SSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYT 108
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 26.7 bits (59), Expect = 3.6
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 22/105 (20%)
Query: 3 GKTVTLHWHGLYQRYTPFMDGVQ------FVTQCPILHNTKFRYKFPAVPDGTFFYHSHI 56
GK VTL + + P V+ + + +LHN + RY G + +S +
Sbjct: 64 GKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYF-----SGLIYTYSGL 118
Query: 57 AL-----QKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITD 96
K I II + + +++P H+ I D
Sbjct: 119 FCVVINPYKQLPIYSEKIIDMYKGKKR------HEMPPHIYAIAD 157
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown
function, uncharacterized protein, signal receiver
domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Length = 137
Score = 26.0 bits (58), Expect = 3.9
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 12/40 (30%)
Query: 56 IALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIIT 95
+ L M G + ++ D VII T
Sbjct: 56 LKLPDMSGED---VLDWINQNDIPTS---------VIIAT 83
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 26.2 bits (57), Expect = 4.2
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 100 DMTDEKYPGFLRTNTGNFPETYLINGKNNYVYVSNNYIY 138
D + G++P +NG + +Y NN I+
Sbjct: 209 DAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIW 247
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE;
2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A
Length = 609
Score = 26.3 bits (57), Expect = 4.6
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 10/104 (9%)
Query: 45 VPDGTFFYHSHIALQK-----MDGIEGSFIIREPRSIDKTAPLW--DYDLPSHVIIITDW 97
VP GTF I L G + I + ++ + + I ++ +
Sbjct: 54 VPYGTFMVSRGIKLPSNTVLTGAGKRNAVIRFMDSVGRGESLMYNENVTTGNENIFLSSF 113
Query: 98 LHDMTDEKYPGFLRTNTGNFPE-TYLINGKNNYVYVSNNYIYAP 140
D +++ + G+ + N VY+ +
Sbjct: 114 TLDGNNKRLGQGISGIGGSRESNLSIRACHN--VYIRDIEAVDC 155
>3jte_A Response regulator receiver protein; structural genomics, nysgrc,
response regulator receiver domain, target 11226E,
PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Length = 143
Score = 24.8 bits (55), Expect = 9.1
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 12/40 (30%)
Query: 56 IALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIIT 95
+ + K+ G++ I+RE + I + VII+T
Sbjct: 57 MKMPKLSGMD---ILREIKKITP-------HMA--VIILT 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.142 0.468
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,360,211
Number of extensions: 131643
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 72
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.8 bits)