RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6774
(140 letters)
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 131
Score = 73.5 bits (180), Expect = 2e-18
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAV-PDGTFFYHSHIALQ 59
M + ++HWHGL+QR T + DG V QCPI F YKF GTF+YHSH Q
Sbjct: 56 TMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQ 115
Query: 60 KMDGIEGSFIIREP 73
DG+ G +I +
Sbjct: 116 YCDGLRGPMVIYDD 129
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 130
Score = 71.6 bits (175), Expect = 1e-17
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAV-PDGTFFYHSHIALQ 59
M K+ ++HWHG +Q T + DG FV QCPI F Y F GTF+YHSH++ Q
Sbjct: 56 TMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPR 74
DG+ G F++ +P+
Sbjct: 116 YCDGLRGPFVVYDPK 130
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 136
Score = 69.3 bits (169), Expect = 1e-16
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD-GTFFYHSHIALQ 59
M + ++HWHG +Q T MDG FV QCPI+ N F Y F GT++YHSH++ Q
Sbjct: 56 NMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREP 73
DG+ G+F++ +P
Sbjct: 116 YCDGLRGAFVVYDP 129
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 129
Score = 62.8 bits (152), Expect = 3e-14
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK 60
+ + V +HWHG+ QR TP+ DG ++QC I F Y F GTFFYH H+ +Q+
Sbjct: 52 LHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQR 111
Query: 61 MDGIEGSFIIREPRS 75
G+ GS I+ P+
Sbjct: 112 SAGLYGSLIVDPPQG 126
>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 181
Score = 51.8 bits (123), Expect = 1e-09
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPIL---HNTKFRYKFPAV-PDGTFFYHSH----IAL 58
+H HG + ++ + + Y +P +YH H L
Sbjct: 102 VVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRL 161
Query: 59 QKMDGIEGSFIIREPRS 75
G+ G++II +P+
Sbjct: 162 NVYAGLVGAYIIHDPKE 178
>d2j5wa1 b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 49.7 bits (118), Expect = 6e-09
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 18/96 (18%)
Query: 1 MMGKTVTLHWHGLYQR----YTPFMDGVQ--FVTQCPILHNTKFRYKFPAVPD------- 47
+ + T H HG+ + D + ++ Y A +
Sbjct: 93 LASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGD 152
Query: 48 ---GTFFYHSHI--ALQKMDGIEGSFIIREPRSIDK 78
T YHSHI G+ G II + S+DK
Sbjct: 153 GNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDK 188
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 162
Score = 49.3 bits (117), Expect = 7e-09
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHN-TKFRYKFPAVPDGTFFYHSHIALQ 59
++ ++HWHG++Q+ T DG VT+CPI + Y++ A GT +YHSH + Q
Sbjct: 85 LVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQ 144
Query: 60 KMDGIEGSFIIREPRSI 76
+G+ G+ I P S+
Sbjct: 145 YGNGVVGTIQINGPASL 161
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 159
Score = 48.9 bits (116), Expect = 8e-09
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH----I 56
++ H + + + + +F A GTF YH +
Sbjct: 79 LVNPATNAMPHNVEFHGAT--GALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 57 ALQKMDGIEGSFIIREP 73
+ G+ G+ ++
Sbjct: 137 PWHVVSGMSGTLMVLPR 153
>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 207
Score = 48.6 bits (115), Expect = 2e-08
Identities = 11/100 (11%), Positives = 25/100 (25%), Gaps = 22/100 (22%)
Query: 1 MMGKTVTLHWHGL----------YQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDG-- 48
+++ G+ Y + + F Y++ +
Sbjct: 103 KGAYPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGP 162
Query: 49 --------TFFYHSHIALQK--MDGIEGSFIIREPRSIDK 78
Y+S + K G+ G I + S+
Sbjct: 163 TNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKGSLHA 202
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 47.0 bits (111), Expect = 4e-08
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 5/73 (6%)
Query: 4 KTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH---IALQK 60
+ H + G + F A+ G + YH + +
Sbjct: 75 NPSSTVPHNVDFHAATGQGGG--AAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHI 132
Query: 61 MDGIEGSFIIREP 73
+G+ G ++
Sbjct: 133 ANGMYGLILVEPK 145
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 180
Score = 47.0 bits (111), Expect = 7e-08
Identities = 13/104 (12%), Positives = 37/104 (35%), Gaps = 18/104 (17%)
Query: 1 MMGKTVTLHWHGLY----QRYTPFMDGVQFVTQC--PILHNTKFRYKFPA---------- 44
K +++H G+ + D + + + ++ Y++
Sbjct: 77 KAHKPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDD 136
Query: 45 VPDGTFFYHSHIALQK--MDGIEGSFIIREPRSIDKTAPLWDYD 86
P T Y+S++ L + G+ G +I + ++ + ++
Sbjct: 137 PPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTEDGTQKMFE 180
>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 145
Score = 45.9 bits (108), Expect = 1e-07
Identities = 8/64 (12%), Positives = 19/64 (29%)
Query: 9 HWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSF 68
HG+Y ++ + + T +GTF G++ +
Sbjct: 81 DVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKY 140
Query: 69 IIRE 72
+ +
Sbjct: 141 TVNQ 144
>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 45.9 bits (108), Expect = 1e-07
Identities = 11/72 (15%), Positives = 21/72 (29%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK 60
M + H + GV I T + G + H H+
Sbjct: 77 MGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHI 136
Query: 61 MDGIEGSFIIRE 72
G+E ++ + +
Sbjct: 137 HAGMETTYTVLQ 148
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 139
Score = 45.6 bits (107), Expect = 1e-07
Identities = 10/70 (14%), Positives = 22/70 (31%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK 60
+ G H Q + P+L + + A G + + + +
Sbjct: 69 LGGSRDIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGEIQ 128
Query: 61 MDGIEGSFII 70
G++ F+I
Sbjct: 129 RAGMQTPFLI 138
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId:
920]}
Length = 153
Score = 44.4 bits (104), Expect = 3e-07
Identities = 9/73 (12%), Positives = 16/73 (21%), Gaps = 3/73 (4%)
Query: 2 MGKTVTLHWHG--LYQRYTPFMDGVQFVTQCPILHNTKFRYKFP-AVPDGTFFYHSHIAL 58
G + + G F GT++Y I
Sbjct: 81 FGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPG 140
Query: 59 QKMDGIEGSFIIR 71
G G +++
Sbjct: 141 HAATGQFGKIVVK 153
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 146
Score = 44.1 bits (103), Expect = 5e-07
Identities = 8/64 (12%), Positives = 17/64 (26%)
Query: 9 HWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSF 68
H + + + + T F A G + G++ F
Sbjct: 82 DVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFF 141
Query: 69 IIRE 72
++E
Sbjct: 142 QVQE 145
>d2q9oa2 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 181
Score = 43.2 bits (101), Expect = 1e-06
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 85 YDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNNYVYVSN 134
YD+ V ITD+ + D+ F + N F + LING
Sbjct: 1 YDIDLGVFPITDYYYRAADD-LVHFTQNNAPPFSDNVLINGTAVNPNTGE 49
>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 168
Score = 42.4 bits (99), Expect = 3e-06
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 84 DYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNNYVYVSNNYIYA 139
D D S VI I DW H ++ +P P+T LING + A
Sbjct: 2 DVDDASTVITIADWYHSLSTVLFPNP--NKAPPAPDTTLINGLGRNSANPSAGQLA 55
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 153
Score = 40.5 bits (94), Expect = 1e-05
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH-----IALQKM 61
H + G +T I K +F A G F YH I +
Sbjct: 82 NTMPHNIDFHAATGALGGGGLT--LINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 139
Query: 62 DGIEGSFIIREPR 74
G+ G ++ PR
Sbjct: 140 SGMAGCIMV-LPR 151
>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 39.7 bits (92), Expect = 2e-05
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSH----IALQKM 61
TLHWHGL +DG Q I K P T ++H H Q
Sbjct: 69 TLHWHGLEV--PGEVDGG---PQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVA 123
Query: 62 DGIEGSFIIREPRSI 76
G+ G +I + +
Sbjct: 124 MGLAGLVVIEDDEIL 138
>d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 116
Score = 38.1 bits (88), Expect = 4e-05
Identities = 7/66 (10%), Positives = 20/66 (30%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK 60
++G + ++ ++ ++ T P+G + S I
Sbjct: 49 LIGMSSGPELFSIHFNGQVLEQNHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHF 108
Query: 61 MDGIEG 66
G++
Sbjct: 109 QAGMQA 114
>d1gyca2 b.6.1.3 (A:131-300) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 170
Score = 38.6 bits (89), Expect = 6e-05
Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 77 DKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNNYVYVSNN 135
D A +D D S VI +TDW H L + LING
Sbjct: 1 DPHASRYDVDNESTVITLTDWYHT------AARLGPRFPLGADATLINGLGRSASTPTA 53
>d1hfua2 b.6.1.3 (A:132-303) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 172
Score = 38.5 bits (89), Expect = 6e-05
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNNYVYVSN 134
L+D D + +I + DW H P+ LINGK YV
Sbjct: 5 LYDEDDENTIITLADWYHIPAPSIQGAA-------QPDATLINGKGRYVGGPA 50
>d2j5wa4 b.6.1.3 (A:706-884) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 38.5 bits (89), Expect = 8e-05
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 21/83 (25%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDG----------TF 50
M + ++H HG+ + P L Y + +
Sbjct: 103 MATRPYSIHAHGVQTESST---------VTPTLPGETLTYVWKIPERSGAGTEDSACIPW 153
Query: 51 FYHSHIALQK--MDGIEGSFIIR 71
Y+S + K G+ G I+
Sbjct: 154 AYYSTVDQVKDLYSGLIGPLIVC 176
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 67
Score = 34.5 bits (79), Expect = 4e-04
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 17/70 (24%)
Query: 31 PILHNTKFRYKFPAVPDG----------TFFYHSHIAL--QKMDGIEGSFIIREPRSIDK 78
I N + Y + A + Y+S + G+ G +I ++D
Sbjct: 2 AIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPEKDIHSGLIGPLLICRKGTLD- 60
Query: 79 TAPLWDYDLP 88
+ ++P
Sbjct: 61 ----KETNMP 66
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 209
Score = 32.9 bits (74), Expect = 0.008
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 83 WDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNF--PETYLINGKNNY 129
+D + ++++DW H ++ G P+T L+NG+ +
Sbjct: 4 YDGE---INLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQF 49
>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 174
Score = 31.2 bits (70), Expect = 0.025
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 14/66 (21%)
Query: 84 DYDLPSHVIIITDWLHD-----------MTDEKYPGFLRTNTGNFPETYLINGKNNYVYV 132
+YD+P ++ITD + ET L+NGK
Sbjct: 6 EYDVP---LLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLE 62
Query: 133 SNNYIY 138
Y
Sbjct: 63 VEPRKY 68
>d1gyca3 b.6.1.3 (A:301-499) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 199
Score = 31.0 bits (69), Expect = 0.031
Identities = 17/103 (16%), Positives = 25/103 (24%), Gaps = 19/103 (18%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKF----------RYKFPAVPDGTF 50
G H HG + PI + +F G +
Sbjct: 90 APGAPHPFHLHGHAFAVVRSAGSTTYNYNDPIFRDVVSTGTPAAGDNVTIRFQTDNPGPW 149
Query: 51 FYHSHIALQKMDGIEGSFIIRE---------PRSIDKTAPLWD 84
F H HI G F P++ P++D
Sbjct: 150 FLHCHIDFHLEAGFAIVFAEDVADVKAANPVPKAWSDLCPIYD 192
>d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 29.3 bits (65), Expect = 0.11
Identities = 6/66 (9%), Positives = 13/66 (19%), Gaps = 1/66 (1%)
Query: 9 HWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMD-GIEGS 67
+ V + +F G + H + + G G
Sbjct: 80 GEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQ 139
Query: 68 FIIREP 73
+
Sbjct: 140 LKVEGA 145
>d1kv7a2 b.6.1.3 (A:171-335) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 165
Score = 29.2 bits (65), Expect = 0.11
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 84 DYDLPSHVIIITDWLHDMTDEKYPGFLRTN--TGNFPETYLINGKNNYVYVSNNYIY 138
D+P +I+ D + G F +T L NG + +
Sbjct: 8 IDDVP---VIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWL 61
>d1hfua3 b.6.1.3 (A:304-503) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 200
Score = 27.9 bits (61), Expect = 0.39
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 9 HWHGLYQRYTPFMDGVQFVTQCPILHNT--------KFRYKFPAVPDGTFFYHSHIALQK 60
H HG + P+ + + +F G +F+H HI
Sbjct: 96 HLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHL 155
Query: 61 MDGIEGSFIIREPRSIDKTAP 81
M+G+ F ++D P
Sbjct: 156 MNGLAIVFAEDMANTVDANNP 176
>d1v10a3 b.6.1.3 (A:305-494) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 190
Score = 26.4 bits (57), Expect = 1.3
Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 10/94 (10%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNT--------KFRYKFPAVPDGTFFY 52
G H HG + P+ + ++F G +F
Sbjct: 87 PGGGNHPFHLHGHNFDVVRTPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFL 146
Query: 53 HSHIALQKMDGIEGSFIIREPR--SIDKTAPLWD 84
H HI G+ F P + +P WD
Sbjct: 147 HCHIDWHLEAGLAVVFAEDIPNIPIANAISPAWD 180
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 136
Score = 24.9 bits (54), Expect = 3.4
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 47 DGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAPLWDYDLPSH 90
D F+YHS+ + + GI P D + D+ +
Sbjct: 46 DRAFYYHSNEGKEIV-GIAEIIREAYPDPTDASGKFVCVDIKAD 88
>d2q9oa3 b.6.1.3 (A:344-559) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 216
Score = 24.5 bits (52), Expect = 5.5
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 35 NTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAPLWDYD 86
F G + +H HIA G+ F+ R P + + D D
Sbjct: 141 GGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLER-PADLRQRISQEDED 191
>d1dcea2 b.7.4.1 (A:242-350) Rab geranylgeranyltransferase
alpha-subunit, insert domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 109
Score = 23.7 bits (51), Expect = 6.2
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 71 REPRSIDKTAPLWDYDLPSHVI 92
R P ++ + +W DLP+ +
Sbjct: 47 RTPDGRNRPSHVWLCDLPAASL 68
>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 181
Score = 23.5 bits (50), Expect = 9.4
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 39 RYKFPAVPDGTFFYHSHIALQKMDGIEGSFII 70
++ A + + H H+ + G+ F +
Sbjct: 150 KFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.142 0.468
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,239
Number of extensions: 27740
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 48
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.8 bits)