BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6778
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 164/309 (53%), Gaps = 37/309 (11%)
Query: 30 ENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSG------ACHVCDAGSPRGRF 83
E GRP+RC+P+FVNAAF V + CG PE YC +G +CH+CDAG +
Sbjct: 12 EGGRPQRCMPEFVNAAFNVTVVATNTCGT-PPEEYCVQTGVTGVTKSCHLCDAGQQHLQH 70
Query: 84 PAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIK 143
A +LTD NN ++ T W+S QT + + P+++ LTL LGK F++TY+ L F + +
Sbjct: 71 GAAFLTDYNNQADTTWWQS--QTMLAGVQY-PNSINLTLHLGKAFDITYVRLKF--HTSR 125
Query: 144 PDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI-SRGNEQEALCTDRHKKQGGRC 202
P+S AIYK W P Q+YS C+ Y + G I + G+EQ+ALCTD
Sbjct: 126 PESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLT 185
Query: 203 KCNGHASRCIKSPQG----------ELVCEC-------RHNTAGKDCEKCKPFFSDRPWG 245
N S P E V R NT G + F++
Sbjct: 186 GGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDE------VFNEPKVL 239
Query: 246 RATVYDANE-CKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGR 304
++ Y ++ GGRCKCNGHAS C+K+ L+C C+HNT G DCEKC PFF+DRPW R
Sbjct: 240 KSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRR 299
Query: 305 ATVYDANEC 313
AT A+EC
Sbjct: 300 ATAESASEC 308
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 65/106 (61%), Gaps = 9/106 (8%)
Query: 199 GGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGG 258
GGRCKCNGHAS C+K+ +L+C C+HNT G DCEKC PFF+DRPW RAT A+EC
Sbjct: 252 GGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECL-- 309
Query: 259 RCKCNGHASRCIKSPQ-------GALVCECRHNTAGKDCEKCKPFF 297
C CNG + C P+ G CR NT G CE+C+ F
Sbjct: 310 PCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENF 355
>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains
pdb|3ZYG|B Chain B, Netring2 Lam And Egf1 Domains
pdb|3ZYI|B Chain B, Netring2 In Complex With Ngl2
Length = 353
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 143/345 (41%), Gaps = 50/345 (14%)
Query: 1 MHFLKLL--CVPLLIGA--VCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKVNS-- 54
+H L L C+PL G +C + + P +E C P + +VKV
Sbjct: 2 LHLLALFLHCLPLASGDYDICKSWVTTDEGPTWEF---YACQPKVMRLKDYVKVKVEPSG 58
Query: 55 -VCGLESPERYCDTSGA---CHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNS 110
CG + PER+C + CDA +P P + D T W Q+ S
Sbjct: 59 ITCG-DPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDKEEEGLATYW----QSITWS 113
Query: 111 LSASPDNVTLTLSLGKKFELTY-ISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQC 169
SP +TLS K ELT + ++F + +P + + KS D G++WQP QFY+ C
Sbjct: 114 RYPSPLEANITLSWNKTVELTDDVVMTF--EYGRPTVMVLEKSLDNGRTWQPYQFYAEDC 171
Query: 170 KKLYGRTATGV--ISRGNEQEALCTDRHKKQGGRCKCNGHASRCIKSPQGELVCECRHN- 226
+ +G +A +S + LCT+ + + G K H ++ N
Sbjct: 172 MEAFGMSARRARDMSSSSAHRVLCTEEYSRWAG-SKKEKHVRFEVRDRFAIFAGPDLRNM 230
Query: 227 ----TAGKDCEKCKPFFS--------DRP-WGRATVYDANECKG----------GRCKCN 263
T + + K FF+ RP G V N K GRCKCN
Sbjct: 231 DNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCN 290
Query: 264 GHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATVY 308
HA+ C +G+L CEC HNT G DC KCK F R W RA Y
Sbjct: 291 LHANLC-SMREGSLQCECEHNTTGPDCGKCKKNFRTRSW-RAGSY 333
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 123/297 (41%), Gaps = 39/297 (13%)
Query: 37 CIPDFVNAAFGQEVKVNS---VCGLESPERYCDTSGAC---HVCDAGSPRGRFPAEYLTD 90
C P+ + +VK++ CG + PE +C + CDA +P P E + D
Sbjct: 50 CQPESTDMTKYLKVKLDPPDITCG-DPPETFCAMGNPYMCNNECDASTPELAHPPELMFD 108
Query: 91 LNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELT-YISLSFCPKSIKPDSLAI 149
T W+S P V +TLS K ELT I ++F +S +PD + +
Sbjct: 109 FEGRHPSTFWQSATWKEY----PKPLQVNITLSWSKTIELTDNIVITF--ESGRPDQMIL 162
Query: 150 YKSQDFGKSWQPLQFYSSQCKKLYGRTATGV--ISRGNEQEALCTDRHKK---------- 197
KS D+G++WQP Q+Y++ C + V +S+ E +CT+ +
Sbjct: 163 EKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIH 222
Query: 198 ---QGGRCKCNGHASRCIKSPQGELVCECR----HNTAGKDCEKCKP----FFSDRPWGR 246
+ G R + S G+L + +P F D
Sbjct: 223 FEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLA 282
Query: 247 ATVYDANECKG-GRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPW 302
Y ++ K GRCKCN HA+ C+ L CEC HNT G DC KCK + RPW
Sbjct: 283 RYFYAISDIKVRGRCKCNLHATVCVYD-NSKLTCECEHNTTGPDCGKCKKNYQGRPW 338
>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2
Length = 338
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 134/326 (41%), Gaps = 46/326 (14%)
Query: 16 VCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKVNS---VCGLESPERYCDTSGA-- 70
+C + + P +E C P + +VKV CG + PER+C
Sbjct: 4 ICKSWVTTDEGPTWEF---YACQPKVMRLKDYVKVKVEPSGITCG-DPPERFCSHENPYL 59
Query: 71 -CHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFE 129
+ CDA +P P + D T W Q+ S SP +TLS K E
Sbjct: 60 CSNECDASNPDLAHPPRLMFDKEEEGLATYW----QSITWSRYPSPLEANITLSWNKTVE 115
Query: 130 LTY-ISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV--ISRGNE 186
LT + ++F + +P + + KS D G++WQP QFY+ C + +G +A +S +
Sbjct: 116 LTDDVVMTF--EYGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRARDMSSSSA 173
Query: 187 QEALCTDRHKKQGGRCKCNGHASRCIKSPQGELVCECRHN-----TAGKDCEKCKPFFS- 240
LCT+ + + G K H ++ N T + + K FF+
Sbjct: 174 HRVLCTEEYSRWAG-SKKEKHVRFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTL 232
Query: 241 -------DRP-WGRATVYDANECKG----------GRCKCNGHASRCIKSPQGALVCECR 282
RP G V N K GRCKCN HA+ C +G+L CEC
Sbjct: 233 TDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCSMR-EGSLQCECE 291
Query: 283 HNTAGKDCEKCKPFFSDRPWGRATVY 308
HNT G DC KCK F R W RA Y
Sbjct: 292 HNTTGPDCGKCKKNFRTRSW-RAGSY 316
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 122/332 (36%), Gaps = 77/332 (23%)
Query: 39 PDFVNAAFGQEVKVNSVCGLESPER---------YCDTSGA---------------CHVC 74
P + N A G + ++ CG E+P R YC G C +C
Sbjct: 13 PPYFNLAEGARITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQGQYCDIC 72
Query: 75 DAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYIS 134
A + P D W+S S + V +TL LG+ F + Y+
Sbjct: 73 TAANSNKAHPVSNAID----GTERWWQSPPL----SRGLEYNEVNVTLDLGQVFHVAYVL 124
Query: 135 LSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDR 194
+ F S +PD + +S DFG ++QP QF++S + R + R + + +
Sbjct: 125 IKFA-NSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLERITQDDDVI--- 180
Query: 195 HKKQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSD------------- 241
C SR + GE+V + G P D
Sbjct: 181 ---------CTTEYSRIVPLENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLR 231
Query: 242 ------RPWGRAT---------VYDANECK-GGRCKCNGHASRC-IKSPQGA--LVCECR 282
G+A Y + GGRC C+GHA C K P L C C+
Sbjct: 232 TNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQ 291
Query: 283 HNTAGKDCEKCKPFFSDRPWGRATVYDANECK 314
HNT G C++C P F+ +PW AT ANEC+
Sbjct: 292 HNTCGGSCDRCCPGFNQQPWKPATTDSANECQ 323
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 64/122 (52%), Gaps = 21/122 (17%)
Query: 199 GGRCKCNGHASRC-IKSPQG--ELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANEC 255
GGRC C+GHA C K P L C C+HNT G C++C P F+ +PW AT ANEC
Sbjct: 263 GGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANEC 322
Query: 256 KGGRCKCNGHASRCIKSP---------------QGALVC-ECRHNTAGKDCEKCKPFFSD 299
+ C C+GHA C P QG VC +C+H+T G +CE+C P F
Sbjct: 323 QS--CNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFR 380
Query: 300 RP 301
P
Sbjct: 381 AP 382
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 131/303 (43%), Gaps = 51/303 (16%)
Query: 47 GQEVKVNSVCGLESPERYCDTSGA-----CHVCDAGSPRGRF--PAEYLTD----LNNPS 95
Q++ V S CGL PE YC S C +CD+ P P +L + P+
Sbjct: 30 AQKLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDSRDPYHETLNPDSHLIENVVTTFAPN 89
Query: 96 NVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDF 155
+ W +++ V +NVT+ L L +F T++ ++F K+ +P ++ I +S DF
Sbjct: 90 RLKIWW-QSENGV-------ENVTIQLDLEAEFHFTHLIMTF--KTFRPAAMLIERSSDF 139
Query: 156 GKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKK-----QGGRCKCNGHASR 210
GK+W ++++ C+ + +TG + + + + +C R+ +G +
Sbjct: 140 GKAWGVYRYFAYDCESSFPGISTGPMKKVD--DIICDSRYSDIEPSTEGEVIFRALDPAF 197
Query: 211 CIKSPQGELVCE-----------CRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGR 259
I+ P + + +T G + + ++ + VYD G
Sbjct: 198 KIEDPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDSRMEIREKYY--YAVYDM--VVRGN 253
Query: 260 CKCNGHASRC-----IKSPQGALV---CECRHNTAGKDCEKCKPFFSDRPWGRATVYDAN 311
C C GHAS C + +V C CRHNT G +CE C F+ D PW A ++N
Sbjct: 254 CFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSN 313
Query: 312 ECK 314
CK
Sbjct: 314 ACK 316
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 66/132 (50%), Gaps = 21/132 (15%)
Query: 200 GRCKCNGHASRC-----IKSPQGELV---CECRHNTAGKDCEKCKPFFSDRPWGRATVYD 251
G C C GHAS C + +V C CRHNT G +CE C F+ D PW A +
Sbjct: 252 GNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRN 311
Query: 252 ANECKGGRCKCNGHASRC---------IKSPQGALVCECRHNTAGKDCEKCKPFFSDRPW 302
+N CK +C CN H+S C + G + C+HNT G++CE+CKPF+ P
Sbjct: 312 SNACK--KCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHP- 368
Query: 303 GRATVYDANECK 314
+ D N C+
Sbjct: 369 -ERDIRDPNLCE 379
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 16/145 (11%)
Query: 168 QCKKLYGRTATGVISRGNEQEALCTDRHKKQGGRCKCNGHASRCIKSPQGELVCECRHNT 227
QCK Y + I N E D + G C+G+ + G+ C C+ +
Sbjct: 359 QCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGI-CDGYTDFSVGLIAGQ--CRCKLHV 415
Query: 228 AGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSP--QGALVCECRHNT 285
G+ C+ CK F D + D CK C CN + +P C C+
Sbjct: 416 EGERCDVCKEGFYD-----LSAEDPYGCKS--CACNPLGTIPGGNPCDSETGYCYCKRLV 468
Query: 286 AGKDCEKCKPFFSDRPWGRATVYDA 310
G+ C++C P + WG + D
Sbjct: 469 TGQRCDQCLP----QHWGLSNDLDG 489
>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type
Epidermal Growth Factor-Like (Le) Modules Of Laminin
Gamma1 Chain Harboring The Nidogen Binding Site
Length = 162
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 222 ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALV--C 279
+C +NTAG C++CK F P A++CK C CN + + +S + C
Sbjct: 79 KCIYNTAGFYCDRCKEGFFGNPLAPNP---ADKCKA--CACNPYGTVQQQSSCNPVTGQC 133
Query: 280 ECRHNTAGKDCEKCKPFFSDRPWGRA 305
+C + +G+DC C P + + G+
Sbjct: 134 QCLPHVSGRDCGTCDPGYYNLQSGQG 159
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 204 CNGHASRCIKSPQGELVC-ECRHNTAGKDCEKCKPFFSDRPWG--------RATVYDANE 254
C G +S I E+VC C TAGK CE C + P G R + N
Sbjct: 3 CPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNI 62
Query: 255 CKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPW 302
CN C+K C +NTAG C++CK F P
Sbjct: 63 DPNAVGNCNRLTGECLK---------CIYNTAGFYCDRCKEGFFGNPL 101
>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex
Length = 164
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 222 ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALV--C 279
+C +NTAG C++CK F P A++CK C CN + + +S + C
Sbjct: 81 KCIYNTAGFYCDRCKEGFFGNPLAPNP---ADKCKA--CACNPYGTVQQQSSCNPVTGQC 135
Query: 280 ECRHNTAGKDCEKCKPFFSDRPWGRA 305
+C + +G+DC C P + + G+
Sbjct: 136 QCLPHVSGRDCGTCDPGYYNLQSGQG 161
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 18/110 (16%)
Query: 202 CKCNGHASRCIKSPQGELVC-ECRHNTAGKDCEKCKPFFSDRPWG--------RATVYDA 252
C C G +S I E+VC C TAGK CE C + P G R +
Sbjct: 3 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 62
Query: 253 NECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPW 302
N CN C+K C +NTAG C++CK F P
Sbjct: 63 NIDPNAVGNCNRLTGECLK---------CIYNTAGFYCDRCKEGFFGNPL 103
>pdb|2DW0|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW0|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW1|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW1|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW2|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
pdb|2DW2|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
Length = 419
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 161 PLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGGRCKCNGHASRCIKSPQGELV 220
P+ ++ QC L+G E E C +R++K C I ++
Sbjct: 314 PIMYH--QCYDLFGADVY-------EAEDSCFERNQKGNYYGYCRKENGNKIPCAPEDVK 364
Query: 221 C---ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGH 265
C C+ N+ G++ CK F+S+ + V +C G+ NGH
Sbjct: 365 CGRLYCKDNSPGQN-NPCKMFYSNEDEHKGMVLPGTKCADGKVCSNGH 411
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,977,087
Number of Sequences: 62578
Number of extensions: 419563
Number of successful extensions: 794
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 64
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)