Query psy6778
Match_columns 314
No_of_seqs 275 out of 1307
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 18:10:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aqt_A Laminin subunit gamma-1 100.0 4.3E-80 1.5E-84 600.6 19.0 272 23-302 4-360 (375)
2 2y38_A Laminin subunit alpha-5 100.0 3.1E-77 1.1E-81 583.8 17.8 267 31-310 5-391 (403)
3 3zyj_B Netrin-G1; cell adhesio 100.0 1.6E-70 5.5E-75 538.6 16.9 270 16-301 21-395 (426)
4 4aqs_A Laminin subunit beta-1; 100.0 2.5E-66 8.6E-71 522.5 16.3 269 23-306 3-373 (525)
5 3tbd_A Netrin-G2, laminet-2; l 100.0 5.9E-63 2E-67 471.9 11.9 223 16-249 4-316 (338)
6 1klo_A Laminin; glycoprotein; 99.7 1.9E-18 6.5E-23 149.3 2.4 95 202-303 1-102 (162)
7 1klo_A Laminin; glycoprotein; 99.5 3.8E-15 1.3E-19 128.6 3.3 94 198-302 52-156 (162)
8 2y38_A Laminin subunit alpha-5 98.8 1.9E-09 6.5E-14 105.4 3.9 49 258-307 264-316 (403)
9 4aqs_A Laminin subunit beta-1; 98.7 5.8E-09 2E-13 104.7 4.4 112 197-313 313-443 (525)
10 3tbd_A Netrin-G2, laminet-2; l 98.6 1.2E-08 4E-13 97.6 1.7 49 258-307 268-316 (338)
11 4a3z_A GH89_CBM32, alpha-N-ace 98.5 2.4E-07 8.4E-12 79.5 7.8 86 39-162 24-109 (161)
12 3zyj_B Netrin-G1; cell adhesio 98.4 5.4E-08 1.8E-12 95.6 2.6 48 258-306 295-342 (426)
13 4aqt_A Laminin subunit gamma-1 98.4 1.2E-07 4E-12 92.0 3.9 56 258-313 253-308 (375)
14 2gy5_A Angiopoietin-1 receptor 97.9 3.7E-06 1.3E-10 82.5 3.4 78 204-300 205-287 (423)
15 3lei_A Platelet aggregation fa 97.6 0.0001 3.4E-09 62.0 7.1 90 40-161 8-101 (153)
16 4a42_A GH89_CBM32-4, alpha-N-a 97.6 7.8E-05 2.7E-09 62.6 6.0 82 41-162 23-104 (149)
17 2yc2_A IFT25, intraflagellar t 97.6 0.0001 3.4E-09 61.4 6.4 65 81-162 25-90 (139)
18 2jda_A Yecbm32; hypothetical p 97.6 0.00013 4.6E-09 59.4 6.9 67 82-164 23-89 (145)
19 3eyp_A Putative alpha-L-fucosi 97.5 0.00011 3.8E-09 73.0 7.2 85 42-162 325-410 (469)
20 1tvg_A LOC51668 protein; cell 97.5 0.00015 5E-09 61.8 6.7 64 81-162 33-98 (153)
21 4a4a_A Alpha-N-acetylglucosami 97.5 0.00014 4.9E-09 77.3 7.6 85 39-164 22-106 (914)
22 2gy5_A Angiopoietin-1 receptor 97.5 4.5E-05 1.5E-09 74.8 3.5 61 217-294 261-322 (423)
23 4a41_A GH89_CBM32-5, alpha-N-a 97.5 0.00021 7.1E-09 60.5 6.9 72 82-163 44-117 (161)
24 3f2z_A Uncharacterized protein 97.4 0.0004 1.4E-08 58.2 7.7 74 82-164 27-102 (159)
25 4gwi_A Lectinolysin, platelet 97.3 0.00073 2.5E-08 57.2 8.0 90 41-161 9-101 (153)
26 2j1a_A Hyaluronidase, CBM32; p 97.2 0.00043 1.5E-08 56.3 6.1 72 82-162 25-98 (150)
27 3hnm_A Putative chitobiase; PS 97.2 0.00055 1.9E-08 59.2 6.4 75 81-165 37-117 (172)
28 3ggl_A Putative chitobiase; X- 97.1 0.0011 3.7E-08 56.3 7.7 74 82-164 37-112 (169)
29 1k12_A Lectin; beta barrel, pr 96.8 0.0035 1.2E-07 52.9 8.0 88 39-153 6-96 (158)
30 2j1v_A Fucolectin-related prot 96.6 0.0056 1.9E-07 51.4 7.8 87 37-154 11-99 (151)
31 3cqo_A FBP32; F-lectin, fucole 96.6 0.0032 1.1E-07 58.1 6.4 88 41-159 3-95 (293)
32 2j22_A Fucolectin-related prot 95.8 0.012 4.3E-07 49.2 5.8 71 37-138 7-78 (148)
33 3cqo_A FBP32; F-lectin, fucole 95.8 0.012 4E-07 54.2 6.1 91 39-161 149-245 (293)
34 3ues_A Alpha-1,3/4-fucosidase; 95.8 0.011 3.7E-07 58.9 6.2 83 42-163 352-436 (478)
35 2v72_A CBM32, EXO-alpha-sialid 95.2 0.031 1.1E-06 44.8 6.0 67 82-158 26-94 (143)
36 1k3i_A Galactose oxidase precu 95.1 0.032 1.1E-06 56.4 7.1 73 82-162 41-117 (656)
37 1w8o_A Bacterial sialidase; 3D 95.0 0.04 1.4E-06 55.1 7.1 74 82-163 477-553 (601)
38 2v5d_A O-GLCNACASE NAGJ; famil 94.6 0.042 1.4E-06 57.3 6.3 74 81-163 611-686 (737)
39 3k6s_B Integrin beta-2; cell r 94.4 0.03 1E-06 58.0 4.7 55 219-293 538-593 (687)
40 2ygq_A WIF-1, WNT inhibitory f 94.4 0.049 1.7E-06 51.3 5.8 15 220-234 198-212 (324)
41 3bn6_A Lactadherin; anticoagul 94.2 0.05 1.7E-06 45.5 4.8 72 82-164 32-106 (158)
42 2w1s_A Hyaluronoglucosaminidas 93.6 0.13 4.6E-06 44.7 6.6 48 117-165 65-116 (192)
43 2cho_A Glucosaminidase, hexosa 92.5 0.05 1.7E-06 56.7 2.6 69 84-163 604-672 (716)
44 3k6s_B Integrin beta-2; cell r 92.1 0.028 9.4E-07 58.4 -0.0 58 219-291 446-513 (687)
45 1czt_A Protein (coagulation fa 92.0 0.17 5.9E-06 42.4 4.8 57 97-163 45-104 (160)
46 2qqi_A Neuropilin-1; VEGF rece 92.0 0.53 1.8E-05 43.7 8.7 72 82-163 188-262 (318)
47 2ygq_A WIF-1, WNT inhibitory f 91.6 0.08 2.7E-06 49.8 2.6 25 275-300 292-316 (324)
48 2qqj_A Neuropilin-2; VEGF rece 91.2 0.22 7.7E-06 46.3 5.2 69 82-163 33-106 (325)
49 2e26_A Reelin, reeler protein; 90.9 0.17 5.9E-06 52.5 4.4 27 202-234 539-565 (725)
50 1jhj_A APC10; beta sandwich, j 90.4 0.23 7.8E-06 42.8 4.1 68 83-164 39-109 (171)
51 2qqi_A Neuropilin-1; VEGF rece 90.2 0.31 1.1E-05 45.3 5.1 69 82-163 32-105 (318)
52 2vj2_A Jagged-1; signalling, p 90.1 0.053 1.8E-06 46.0 -0.2 19 219-237 83-101 (169)
53 4d90_A EGF-like repeat and dis 90.1 0.28 9.6E-06 39.6 4.2 58 217-294 78-135 (143)
54 3fcs_B Integrin beta-3; beta p 89.9 0.18 6.1E-06 52.3 3.5 66 219-290 545-626 (690)
55 4deq_A Neuropilin-1, vascular 89.4 0.41 1.4E-05 42.6 5.1 70 82-164 31-105 (218)
56 2wuh_A Discoidin domain recept 87.9 0.63 2.1E-05 39.8 5.1 46 117-163 72-121 (178)
57 2ddu_A Reelin; beta-jelly-roll 87.7 0.41 1.4E-05 46.3 4.2 48 118-165 71-119 (387)
58 4d90_A EGF-like repeat and dis 87.1 0.5 1.7E-05 38.1 3.8 75 209-291 12-94 (143)
59 2qqm_A Neuropilin-1; VEGF rece 87.1 1.3 4.6E-05 42.8 7.6 72 82-163 320-394 (450)
60 2zxq_A Endo-alpha-N-acetylgala 86.2 0.14 4.8E-06 56.3 0.0 74 82-163 1243-1321(1376)
61 2vm9_A Discoidin-2, discoidin 86.0 0.99 3.4E-05 40.9 5.5 57 97-163 49-106 (257)
62 2vj3_A Neurogenic locus notch 85.3 0.52 1.8E-05 38.0 3.0 17 217-233 26-42 (135)
63 2vj3_A Neurogenic locus notch 85.2 0.52 1.8E-05 38.0 3.0 63 209-292 57-119 (135)
64 3fcs_B Integrin beta-3; beta p 85.0 0.46 1.6E-05 49.2 3.2 56 220-291 459-522 (690)
65 2p28_B Integrin beta-2; hybrid 84.9 0.17 5.8E-06 45.1 -0.1 70 203-291 97-174 (217)
66 2qqj_A Neuropilin-2; VEGF rece 84.7 2.4 8.1E-05 39.2 7.7 73 82-164 189-270 (325)
67 3fl7_A Ephrin receptor; ATP-bi 83.7 0.56 1.9E-05 47.1 3.0 40 218-265 262-303 (536)
68 2vj2_A Jagged-1; signalling, p 83.4 0.41 1.4E-05 40.3 1.7 55 218-292 113-169 (169)
69 3hny_M Coagulation factor VIII 82.5 1.3 4.4E-05 37.0 4.4 57 97-163 47-106 (159)
70 2qqk_A Neuropilin-2; VEGF rece 82.4 2.5 8.4E-05 42.3 7.2 73 82-164 437-518 (579)
71 1sdd_B Coagulation factor V; c 82.2 1.4 4.7E-05 44.8 5.3 75 82-163 354-431 (647)
72 2qqo_A Neuropilin-2; VEGF rece 81.9 3.1 0.0001 40.4 7.5 73 82-164 318-399 (460)
73 1gqp_A DOC1/APC10; cell cycle, 80.0 1.5 5.3E-05 39.1 4.2 57 83-152 70-129 (221)
74 2wg3_C Hedgehog-interacting pr 77.6 0.5 1.7E-05 46.4 0.3 47 220-292 409-455 (463)
75 3gdb_A Endo-D, putative unchar 77.6 0.46 1.6E-05 50.6 0.0 87 39-162 797-895 (937)
76 2qqm_A Neuropilin-1; VEGF rece 76.0 2.5 8.7E-05 40.8 4.8 69 82-163 164-237 (450)
77 2yfu_A Carbohydrate binding fa 70.3 8.3 0.00028 32.3 6.0 66 85-163 25-94 (155)
78 2qqo_A Neuropilin-2; VEGF rece 68.9 8 0.00027 37.4 6.5 45 118-163 186-235 (460)
79 4gz9_A Neuropilin-1, A5 protei 68.5 11 0.00036 37.8 7.5 47 117-164 464-513 (577)
80 2r7e_B Coagulation factor VIII 65.8 4.9 0.00017 42.0 4.4 69 82-163 483-554 (770)
81 1x7a_L Coagulation factor IX, 65.3 3.1 0.00011 34.2 2.3 63 209-293 60-127 (146)
82 1edm_B Factor IX; epidermal gr 64.4 3.6 0.00012 25.7 2.0 26 266-292 14-39 (39)
83 2c4f_L Coagulation factor VII 63.0 1.6 5.4E-05 35.6 0.1 25 209-234 59-83 (142)
84 1sdd_B Coagulation factor V; c 61.3 5.6 0.00019 40.3 3.8 47 117-164 543-592 (647)
85 1aut_L Activated protein C; se 60.6 3.9 0.00014 31.8 2.0 66 209-293 26-95 (114)
86 1a3p_A Epidermal growth factor 60.3 3.5 0.00012 26.8 1.4 26 209-234 15-41 (45)
87 2p28_B Integrin beta-2; hybrid 58.4 1.6 5.5E-05 38.6 -0.7 16 276-292 199-214 (217)
88 2qqk_A Neuropilin-2; VEGF rece 57.1 12 0.00042 37.1 5.5 46 117-163 304-354 (579)
89 1tpg_A T-plasminogen activator 56.8 7.9 0.00027 29.0 3.1 26 266-292 59-86 (91)
90 1nfu_B Coagulation factor XA, 56.8 1.8 6.2E-05 37.8 -0.6 64 209-292 54-121 (195)
91 3u7u_G Neuregulin 1; signaling 56.2 4 0.00014 28.3 1.2 18 217-234 32-49 (55)
92 1egf_A Epidermal growth factor 55.9 12 0.00043 25.0 3.7 33 265-298 16-50 (53)
93 4ag4_A Epithelial discoidin do 55.4 13 0.00044 35.3 5.0 47 116-163 58-108 (351)
94 2vh0_B Activated factor XA lig 52.2 2.3 8E-05 34.2 -0.6 64 209-292 54-121 (134)
95 1nql_B Epidermal growth factor 52.1 4.7 0.00016 27.5 1.0 27 209-235 18-45 (53)
96 1egf_A Epidermal growth factor 51.7 12 0.0004 25.2 3.0 32 209-240 18-50 (53)
97 2r7e_B Coagulation factor VIII 49.5 13 0.00046 38.7 4.4 46 117-163 665-713 (770)
98 1k36_A Epiregulin; EGF-like fo 47.3 9 0.00031 25.2 1.8 25 210-234 18-43 (46)
99 2hey_R Tumor necrosis factor r 46.8 6 0.0002 32.4 1.0 65 227-301 35-112 (146)
100 1hae_A Heregulin-alpha; growth 42.4 9.5 0.00033 26.5 1.4 18 217-234 30-47 (63)
101 2k2s_B Micronemal protein 6; m 42.2 7.1 0.00024 27.6 0.7 30 204-234 19-50 (61)
102 3ca7_A Protein spitz; argos, E 41.9 6.3 0.00021 26.5 0.3 17 218-234 32-48 (52)
103 2ygo_A WIF-1, WNT inhibitory f 41.9 12 0.00042 32.4 2.3 30 203-237 154-183 (188)
104 2rnl_A Amphiregulin; AR, color 41.6 13 0.00044 25.2 1.9 25 210-234 24-49 (50)
105 3h5c_B Vitamin K-dependent pro 39.0 30 0.001 31.1 4.6 9 293-301 69-77 (317)
106 2ddu_A Reelin; beta-jelly-roll 38.8 50 0.0017 31.7 6.2 23 145-167 311-333 (387)
107 1iox_A Betacellulin; EGF-like 38.2 13 0.00043 25.2 1.4 25 210-234 20-45 (50)
108 3me4_A Tumor necrosis factor r 38.0 14 0.00047 32.6 2.0 17 286-302 146-162 (216)
109 3h5c_B Vitamin K-dependent pro 37.4 31 0.0011 31.0 4.4 24 209-233 17-40 (317)
110 3urf_Z Tumor necrosis factor r 36.6 16 0.00055 30.9 2.2 27 228-261 37-63 (171)
111 1emn_A Fibrillin; extracellula 35.8 34 0.0012 24.7 3.6 22 210-232 18-41 (82)
112 2wn3_A Discoidin-1 subunit A; 34.7 1.1E+02 0.0037 27.2 7.5 40 123-163 63-105 (254)
113 3k51_B Decoy receptor 3; DCR3, 34.4 17 0.00059 30.8 2.0 19 286-304 119-137 (176)
114 2ydt_A EXO-1,5-alpha-L-arabino 33.2 29 0.00099 32.7 3.6 22 143-164 53-74 (367)
115 1yo8_A Thrombospondin-2; EGF, 32.6 13 0.00044 38.1 1.0 23 210-233 62-85 (634)
116 3qd6_R CD40L receptor, tumor n 32.6 24 0.00082 29.7 2.6 63 228-299 35-111 (177)
117 1yo8_A Thrombospondin-2; EGF, 32.5 36 0.0012 34.8 4.3 24 268-291 62-85 (634)
118 2uwi_A CRME protein; receptor, 31.3 11 0.00038 30.8 0.3 30 228-264 34-64 (142)
119 3e50_C Protransforming growth 31.3 23 0.00077 24.0 1.8 18 217-234 28-45 (50)
120 3u3p_A Tumor necrosis factor r 30.8 20 0.0007 33.5 2.0 17 286-302 123-139 (313)
121 1mox_A Epidermal growth factor 30.7 19 0.00064 35.7 1.8 23 220-242 223-247 (501)
122 3a72_A EXO-arabinanase; arabin 27.1 43 0.0015 31.3 3.5 22 144-165 49-70 (355)
123 1uzk_A Fibrillin-1; glycoprote 26.1 19 0.00066 29.3 0.8 19 218-236 74-93 (162)
124 4fhq_A Tumor necrosis factor r 25.1 13 0.00044 30.3 -0.4 34 222-263 30-64 (134)
125 2ydt_A EXO-1,5-alpha-L-arabino 23.4 34 0.0012 32.2 2.1 21 144-164 118-138 (367)
126 4gz9_A Neuropilin-1, A5 protei 23.3 96 0.0033 30.8 5.5 47 116-163 304-355 (577)
127 1jma_B Herpesvirus entry media 22.3 25 0.00084 29.3 0.8 63 228-299 33-112 (167)
128 3a72_A EXO-arabinanase; arabin 22.3 38 0.0013 31.7 2.2 21 145-165 114-134 (355)
129 2bou_A EGF-like module contain 21.8 29 0.00099 27.5 1.1 24 209-233 59-82 (143)
130 3fl7_A Ephrin receptor; ATP-bi 21.7 14 0.00048 36.8 -1.0 30 275-304 292-325 (536)
131 4dxt_A SUN domain-containing p 21.6 2.1E+02 0.0073 24.4 6.8 73 82-166 66-147 (198)
132 3ltf_D Protein spitz; receptor 20.9 29 0.001 23.9 0.8 17 218-234 32-48 (58)
133 1lmj_A Fibrillin 1; EGF, calci 20.9 24 0.00084 25.6 0.4 18 210-228 17-34 (86)
134 1sg1_X Tumor necrosis factor r 20.5 20 0.00069 29.5 -0.1 12 229-241 76-87 (161)
No 1
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=100.00 E-value=4.3e-80 Score=600.59 Aligned_cols=272 Identities=46% Similarity=0.952 Sum_probs=248.4
Q ss_pred CCCCCCc-cCCCcccCCCcchhhccCCceeecCccCCCCCccccCCC------CCcccCCCCCCCCCCCCceecccCCCC
Q psy6778 23 LNSDPCY-ENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTS------GACHVCDAGSPRGRFPAEYLTDLNNPS 95 (314)
Q Consensus 23 ~~~~~c~-~~g~~~~C~P~~~nla~g~~v~assTCG~~~~e~yC~~~------~~C~~Cd~~~p~~~hp~~~~~D~~~~~ 95 (314)
+++|||| +.|+||+|+|+|+|||+||+|+||||||+ +||+||+++ ++|++|||++|+++||+++|+|+++..
T Consensus 4 ~~~d~Cyd~~~~p~~C~P~~~N~a~~~~i~assTCG~-~pe~yC~~~~~~~~~~~C~~Cda~~p~~~Hp~~~~~D~~~~~ 82 (375)
T 4aqt_A 4 AAMDECADEGGRPQRCMPEFVNAAFNVTVVATNTCGT-PPEEYCVQTGVTGVTKSCHLCDAGQQHLQHGAAFLTDYNNQA 82 (375)
T ss_dssp ----CCBCTTCCBCCCCCCCEETTTTCCCEESCCTTS-SCEEEECCC----CCCCEEEECSSSTTTCCCGGGGSSCCCSS
T ss_pred CCCCCCcCCCCCcCccCCchhhhccCCeeeEecCCCC-CCcCeEEecCCcccCCcCCccCCCChhhhCCHhheeccCCCC
Confidence 4589999 68999999999999999999999999996 899999986 689999999999999999999999999
Q ss_pred CceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCCCcccceeehhhhhcccCC
Q psy6778 96 NVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGR 175 (314)
Q Consensus 96 ~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~tw~p~~yya~~C~~~f~~ 175 (314)
+.|||||+++. .+.+.+++|||||||+|+|+|+||+|+|+ ++||++|+||||+|+|+||+||||||.+|.+.|+|
T Consensus 83 ~~TwWQS~~~~---~~~~~~~~VtitLdL~~~f~~t~v~i~F~--~~rP~~m~Iers~d~G~tw~p~qyfa~~C~~~f~~ 157 (375)
T 4aqt_A 83 DTTWWQSQTML---AGVQYPNSINLTLHLGKAFDITYVRLKFH--TSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSK 157 (375)
T ss_dssp SCCCEECCCGG---GTCSSSCCEEEEEEEEEEEEEEEEEEEES--SSCCSEEEEEEESSSSSCCEEEEEEETTHHHHHSC
T ss_pred CCceEECCCcc---ccCCCCcceEEEEcCCCeEEEEEEEEEec--CCCCCcEEEEEecCCCCCccceeeeecchhHhcCC
Confidence 99999999984 12345689999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCcCcccc-CCCCCceecccCc----------------------------------------------------------
Q psy6778 176 TATGVISR-GNEQEALCTDRHK---------------------------------------------------------- 196 (314)
Q Consensus 176 ~~~~~~~~-~~~~~~~Ct~~ys---------------------------------------------------------- 196 (314)
++++.+.. .+++++||++.||
T Consensus 158 ~~~~~~~~~~~~~~viCt~~ys~~~p~~~g~v~~~~l~~rp~~~~~~~s~~lq~~~~at~iRi~l~~~~~~~~~~~~~~~ 237 (375)
T 4aqt_A 158 ANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNEPK 237 (375)
T ss_dssp CTTCCCCTTSCTTCCEEESTTCSCCSSSCEEEEEETTTTCTTGGGGGGCHHHHHHTEEEEEEEEEEECCCCSGGGSCCHH
T ss_pred CCCCCcCCCCCCCeeEeCCcCCCCcCCcCCeEEEEeccCCCCcccCCcCHHHhhhhhheeeeeeecccccCccccccccc
Confidence 88877643 5688999999886
Q ss_pred ------------ccccCCCCCCCCCCCccCCCCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCC
Q psy6778 197 ------------KQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNG 264 (314)
Q Consensus 197 ------------~v~g~C~CnGHa~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~ 264 (314)
.|+|+|+|||||+.|..+..+.++|.|+|||+|++||+|++|||++||++++...++.|+ +|+||+
T Consensus 238 ~~~~yyYai~di~v~g~C~Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~--~C~Cn~ 315 (375)
T 4aqt_A 238 VLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECL--PCDCNG 315 (375)
T ss_dssp HHTTCCCEEEEEEEEEEECCTTSCSCEEECTTSCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCC--CCCGGG
T ss_pred ccccceeeecccccCceecCCCCCcccCCCCCCCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCC--CCcCcC
Confidence 689999999999999877656678899999999999999999999999999999999999 999999
Q ss_pred CCCCcccC-------CCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778 265 HASRCIKS-------PQGALVCECRHNTAGKDCEKCKPFFSDRPW 302 (314)
Q Consensus 265 h~~~C~~~-------~~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~ 302 (314)
|++.|.++ ..+|+|++|++||+|++||+|++|||+++.
T Consensus 316 ~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~Ce~C~~Gyyg~~~ 360 (375)
T 4aqt_A 316 RSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGN 360 (375)
T ss_dssp SCSCEEECHHHHHHSSCCEEECSCTTTEESTTSCEECSSEECCTT
T ss_pred CCCCcccccccCccCCCCCCCCCCCCCCcCCCCCCCCcCcccCcC
Confidence 99998765 568999899999999999999999999874
No 2
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-77 Score=583.82 Aligned_cols=267 Identities=33% Similarity=0.720 Sum_probs=212.9
Q ss_pred CCCcccCCCcchhhccCCceeecCccCCCCC---------ccccCCC---------------CCcccCCCCCCCCCCCCc
Q psy6778 31 NGRPRRCIPDFVNAAFGQEVKVNSVCGLESP---------ERYCDTS---------------GACHVCDAGSPRGRFPAE 86 (314)
Q Consensus 31 ~g~~~~C~P~~~nla~g~~v~assTCG~~~~---------e~yC~~~---------------~~C~~Cd~~~p~~~hp~~ 86 (314)
+++.++|+|+|+|||+|++|+||||||+++| |+||++. ++|++||+++|.++||++
T Consensus 5 ~~~~~~c~P~~~Nla~~~~i~assTCG~~~~~~~~~~p~~e~yC~~~~~~~~~~~~~~~~~~~~C~~Cda~~p~~~Hp~~ 84 (403)
T 2y38_A 5 GGDGFSLHPPYFNLAEGARITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQGQYCDICTAANSNKAHPVS 84 (403)
T ss_dssp ---CCCBCCCCEETTTTCEEEESSCC--------------------------------------------------CCGG
T ss_pred cccCCccCCcccccccCCeeEEEeCCCCCCCCccccCCcccccceeccCCcccccccccccCCccCccCCCCccccCcHH
Confidence 3557899999999999999999999999776 9999873 589999999999999999
Q ss_pred eecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCCCcccceeeh
Q psy6778 87 YLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYS 166 (314)
Q Consensus 87 ~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~tw~p~~yya 166 (314)
+|+|.+ .|||||+++. .+ ..+++|||||||+|+|+|+||+|+|+ +||||++|+||||+|+|+||+||||||
T Consensus 85 ~~~D~~----~twWQS~~~~-~g---~~~~~V~itLdL~~~f~~t~v~l~F~-~spRP~~m~ierS~D~G~tW~p~qyfa 155 (403)
T 2y38_A 85 NAIDGT----ERWWQSPPLS-RG---LEYNEVNVTLDLGQVFHVAYVLIKFA-NSPRPDLWVLERSTDFGHTYQPWQFFA 155 (403)
T ss_dssp GTTSSS----SCCEECCCST-TC---SSTTCCEEEEEEEEEEEEEEEEEEEC-SSCCCSEEEEEEESSSSSSEEEEEEEC
T ss_pred HhccCC----ceeeccCCcc-CC---CccccceeEEeCCCcEEEEEEEEEec-CCCCCCeEEEEeccCCCCCccceeccc
Confidence 999954 7999999974 11 13578999999999999999999997 699999999999999999999999999
Q ss_pred h---hhhcccCCCCcCccccCCCCCceecccCc-----------------------------------------------
Q psy6778 167 S---QCKKLYGRTATGVISRGNEQEALCTDRHK----------------------------------------------- 196 (314)
Q Consensus 167 ~---~C~~~f~~~~~~~~~~~~~~~~~Ct~~ys----------------------------------------------- 196 (314)
. ||.+.|+++++..+.+ .++|||+++|+
T Consensus 156 ~~~~dC~~~fg~~~~~~~~~--~~~viCt~~ys~~~P~~~g~v~f~~l~gRP~~~~~~~s~~lq~~~~aT~iRi~~~~~~ 233 (403)
T 2y38_A 156 SSKRDCLERFGPRTLERITQ--DDDVICTTEYSRIVPLENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTN 233 (403)
T ss_dssp SSHHHHHHHTCTTTTSCCCS--TTCCCEECSTTCSSSCSSCEEEEESSSSSGGGTTGGGCHHHHHHHEEEEEEEEEEECC
T ss_pred CCccchhhhcCCCCCCCCCC--CCceeeeccCCCCcCCCCCeEEEEecCCCCCcccCCcCHHHHhhhccceEEEEEEecC
Confidence 6 9999999988776655 56899998775
Q ss_pred ---------------------------ccccCCCCCCCCCCCccCCC---CceeeeCCCCCCCCCCccCCCCCCCCCCCC
Q psy6778 197 ---------------------------KQGGRCKCNGHASRCIKSPQ---GELVCECRHNTAGKDCEKCKPFFSDRPWGR 246 (314)
Q Consensus 197 ---------------------------~v~g~C~CnGHa~~C~~~~~---g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~ 246 (314)
.++|+|+|||||++|+++.. ..++|+|+|||+|++||+|++|||++||++
T Consensus 234 t~~~~l~~~~~~~~~~~~~yyyai~~~~vgg~C~CnGHA~~C~~~~~~~~~~g~C~C~hnT~G~~CErC~pGy~g~p~~~ 313 (403)
T 2y38_A 234 TLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKP 313 (403)
T ss_dssp CCTTCHHHHHHTCTTTGGGCCCEEEEEEEEEECCCTTBCSCEEESCTTSTTCEEECCCTTEESSSCCEECTTCCSSCCCC
T ss_pred cccccccccccccccccccceeecccCccccccccCCCccccCCCCCCCccceEeECcCcCcCCCCCCCCccccCCcccc
Confidence 36799999999999986421 246899999999999999999999999999
Q ss_pred CcccCCCCccCCcccCCCCCCCcccC----------------CCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778 247 ATVYDANECKGGRCKCNGHASRCIKS----------------PQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDA 310 (314)
Q Consensus 247 ~t~~~~~~C~~~~C~Cn~h~~~C~~~----------------~~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~~~~~~~~~ 310 (314)
++.+.++.|+ +|+||+|+..|.+| .++|+|++|++||+|++||+|++||||+|..+....+.
T Consensus 314 at~~~~~~C~--pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~~GYyg~p~~~~~~~~~ 391 (403)
T 2y38_A 314 ATTDSANECQ--SCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHV 391 (403)
T ss_dssp CCSSCCCCCC--CCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSCCSSEESTTSCEECTTCEECTTSCTTSTTS
T ss_pred cccCCCcccc--ccccCCCCcccccCcccccccccccccccCCCCCCCCCCcCcCcCCCCCcCCCCccCCCCCCCCCCCc
Confidence 9999999999 99999999999765 35899999999999999999999999999988665554
No 3
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=1.6e-70 Score=538.63 Aligned_cols=270 Identities=32% Similarity=0.609 Sum_probs=202.2
Q ss_pred HhcccccCCCCCCc-----cCCCc---ccCCCcchhhccCCcee---ecCccCCCCCccccCCC--CCc-ccCCCCCCCC
Q psy6778 16 VCGEKIDLNSDPCY-----ENGRP---RRCIPDFVNAAFGQEVK---VNSVCGLESPERYCDTS--GAC-HVCDAGSPRG 81 (314)
Q Consensus 16 ~~~~~~~~~~~~c~-----~~g~~---~~C~P~~~nla~g~~v~---assTCG~~~~e~yC~~~--~~C-~~Cd~~~p~~ 81 (314)
.|...+....|.|+ |.|.+ ++|+|+|+|||+|++|. |+||||+ +||+||++. ++| ++||+++|.+
T Consensus 21 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~C~P~~~n~a~~~~v~~~~assTCG~-~pe~yC~~~~~~~C~~~Cda~~p~~ 99 (426)
T 3zyj_B 21 QPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGD-PPETFCAMGNPYMCNNECDASTPEL 99 (426)
T ss_dssp ---------CCCSEEECCCSSCCCEEEBCCCCCCEEGGGTCEEEEESGGGBSCS-SCEECCCSSCTTCCCCEECSSSTTT
T ss_pred hhhhhhhcccCccccccccCCCCcCcCccCCCcHHhHhcCCeeeeeccCcccCC-CccceeeccCCCcccCcccCCCccc
Confidence 45555566789994 56776 99999999999999988 5999996 899999987 899 9999999999
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEE-EEEeeeccCCCCCCceEEEeecCCCCCcc
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELT-YISLSFCPKSIKPDSLAIYKSQDFGKSWQ 160 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~-~v~l~f~~~s~rP~~~~iekS~D~g~tw~ 160 (314)
+||+++|+|+++..+.|||||+++. ....+.+|||||||+|+|||+ ||+|+|+ ||||++|+||||+|+|+||+
T Consensus 100 aHp~~~~tD~~~~~~~twWQS~~~~----~~~~p~~V~itLdL~~~f~~t~~i~l~F~--spRP~am~ierS~D~G~tW~ 173 (426)
T 3zyj_B 100 AHPPELMFDFEGRHPSTFWQSATWK----EYPKPLQVNITLSWSKTIELTDNIVITFE--SGRPDQMILEKSLDYGRTWQ 173 (426)
T ss_dssp CCCGGGGGSCC----CCCEEBCCCC----SCSSCCCEEEEEEEEEEEEECSCEEEEES--SCCCSEEEEEEESSTTSSCE
T ss_pred cCCHHHeecCCCCCCCceecCCccc----CCCCccceeEEEcCCCcEEEEEEEEeecC--CCCCCeEEEEeccCCCCCce
Confidence 9999999999988899999999984 122467999999999999999 7999999 99999999999999999999
Q ss_pred cceeehhhhhcccCCCCcC--ccccCCCCCceecccCc------------------------------------------
Q psy6778 161 PLQFYSSQCKKLYGRTATG--VISRGNEQEALCTDRHK------------------------------------------ 196 (314)
Q Consensus 161 p~~yya~~C~~~f~~~~~~--~~~~~~~~~~~Ct~~ys------------------------------------------ 196 (314)
||||||.||.+.|+|++++ .+.+.++++|+|++.||
T Consensus 174 p~qYfA~dC~~~Fg~~~~~~~~~~~~~~~~viCt~~yS~~~P~~~GeV~f~~~~~f~~~~gP~~~~~~~~y~~~~~S~~L 253 (426)
T 3zyj_B 174 PYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKL 253 (426)
T ss_dssp EEEEEESSHHHHTSCCCCCGGGCCSSCSSCCCEECTTTCSSSTTTTEEEECSHHHHHHHHCSSCCCHHHHHHHHHHCHHH
T ss_pred ehHHHhhhhHHhcCCCcccccccCCCCCCcceeCCCCCCCCCCCCCEEEEEeccccccccCCCcccccccccccccCHHH
Confidence 9999999999999998764 35556778999987653
Q ss_pred --------------------------------------ccccCCCCCCCCCCCccCCCCceeeeCCCCCCCCCCccCCCC
Q psy6778 197 --------------------------------------KQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPF 238 (314)
Q Consensus 197 --------------------------------------~v~g~C~CnGHa~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pg 238 (314)
.|+|+|+|||||+.|+++ .+.++|.|+|||+|++||+|++|
T Consensus 254 qd~~taT~iRi~l~r~~t~~~~~~~~~~~~yyYAI~d~~v~g~C~CnGHas~C~~~-~g~~~C~C~~~ttG~~CE~C~pg 332 (426)
T 3zyj_B 254 RDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYD-NSKLTCECEHNTTGPDCGKCKKN 332 (426)
T ss_dssp HHHSEEEEEEEEEEECCCSSSSCCSSCGGGCCCEEEEEECEEEECCSSSCSCEEEE-TTEEEECCCTTEESSSSCEECTT
T ss_pred HhhhcceeEEEEEeccccCCccccccccceecceeecccccccCcCCCchhhcCCC-CCCceeeCCCCCcCCCccccccc
Confidence 578999999999999976 35679999999999999999999
Q ss_pred CCCCCCCCCcc-----cCCCCccCCcccCCCCCCCcccCCCCccccC---CCCCCCCCCCCCCCCCCCCCC
Q psy6778 239 FSDRPWGRATV-----YDANECKGGRCKCNGHASRCIKSPQGALVCE---CRHNTAGKDCEKCKPFFSDRP 301 (314)
Q Consensus 239 y~~~p~~~~t~-----~~~~~C~~~~C~Cn~h~~~C~~~~~~G~C~~---C~~nt~G~~Ce~C~~Gyy~~p 301 (314)
||++||++++. +.+++|+ +|+|++|+..|.. ..+.|.+ |++++ +| .|++||+|..
T Consensus 333 y~~~P~~~gt~~p~~~g~~~~C~--pC~Cn~~g~~CD~--~t~~C~ngg~C~~~~---~C-~C~~G~~G~~ 395 (426)
T 3zyj_B 333 YQGRPWSPGSYLPIPKGAANACI--PSISSIGTNVCDN--ELLHCQNGGTCHNNV---RC-LCPAAYTGIL 395 (426)
T ss_dssp CCSSCCCCCBCCSSSSCBCCCCC--CCCC------------------------------------------
T ss_pred cccCcccCCcccccCCCCCCccc--CCCCCCCcCcccc--CcccCCCCCCcCCCC---CC-cCCCCCcCCC
Confidence 99999998863 6789999 9999999999963 3567754 77776 89 8999999864
No 4
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=100.00 E-value=2.5e-66 Score=522.53 Aligned_cols=269 Identities=33% Similarity=0.726 Sum_probs=232.4
Q ss_pred CCCCCCc-cCCCcccCCCcchhhccCC--ceeecCccCCCCCccccCCC-----CCcccCCCCCC--CCCCCCceecccC
Q psy6778 23 LNSDPCY-ENGRPRRCIPDFVNAAFGQ--EVKVNSVCGLESPERYCDTS-----GACHVCDAGSP--RGRFPAEYLTDLN 92 (314)
Q Consensus 23 ~~~~~c~-~~g~~~~C~P~~~nla~g~--~v~assTCG~~~~e~yC~~~-----~~C~~Cd~~~p--~~~hp~~~~~D~~ 92 (314)
+.++|+| .....++|+|+|+|||+|| +|+||||||+++||+||+++ ++|++|||++| +++||+++|+|..
T Consensus 3 ~~~~~~~~~~~~~~~c~p~~~n~~~~~~~~~~~~~tCG~~~~e~~c~~~~~~~~~~c~~Cd~~~p~~~~~hp~~~~~~~~ 82 (525)
T 4aqs_A 3 LAQEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDSRDPYHETLNPDSHLIENV 82 (525)
T ss_dssp ---------CGGGSCBCCCCEESSTTCGGGEECSCCTTSSSCEEEEEECSSSSCEEEEEECCSSCCBTTTBTTCCCGGGS
T ss_pred cccCCccccCCCCCCcCCCchhhhcCCCCcEEEecCCCCCCCcceeccCCCCCCCcCCcCcCCCCcccccCChhhccccc
Confidence 3578888 4557889999999999998 49999999999999999876 67999999998 5789999998853
Q ss_pred C-----CCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCCCcccceeehh
Q psy6778 93 N-----PSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSS 167 (314)
Q Consensus 93 ~-----~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~tw~p~~yya~ 167 (314)
. ....|||||+++ +++|||||||+|+|||+||+|+|. |+||++|+||||+|+|+||+||||||.
T Consensus 83 ~~~~~~~~~~~wwqs~~~---------~~~v~itl~l~~~~~~~~v~~~f~--s~rP~~~~ieks~d~g~tw~p~qy~a~ 151 (525)
T 4aqs_A 83 VTTFAPNRLKIWWQSENG---------VENVTIQLDLEAEFHFTHLIMTFK--TFRPAAMLIERSSDFGKAWGVYRYFAY 151 (525)
T ss_dssp SCC-----CCCCEECCTT---------CCCCEEEEEEEEEEEEEEEEEEES--SCCCSEEEEEEESSTTSSCEEEEEEES
T ss_pred cccccCCCCcccccCCCC---------CcCeEEEEcCCCeEEEEEEEEEEE--CCCCCeEEEEEecCCCCCCcceeeehh
Confidence 2 456799999987 578999999999999999999999 999999999999999999999999999
Q ss_pred hhhcccCCCCcCccccCCCCCceecccCc---------------------------------------------------
Q psy6778 168 QCKKLYGRTATGVISRGNEQEALCTDRHK--------------------------------------------------- 196 (314)
Q Consensus 168 ~C~~~f~~~~~~~~~~~~~~~~~Ct~~ys--------------------------------------------------- 196 (314)
||++.|+|++...+.+ .++|||++.||
T Consensus 152 ~C~~~f~~~~~~~~~~--~~~v~Ct~~~s~~~p~~~g~v~~~~~~~~~~~~~~~s~~l~~~~~~t~iri~~~~~~~~~~~ 229 (525)
T 4aqs_A 152 DCESSFPGISTGPMKK--VDDIICDSRYSDIEPSTEGEVIFRALDPAFKIEDPYSPRIQNLLKITNLRIKFVKLHTLGDN 229 (525)
T ss_dssp STTTTSSSSCCSCCSS--TTCCCEECTTCCSCSTTTCEEEEESSCSSSCCSCTTSHHHHHHHEEEEEEEEEEECCCTTCC
T ss_pred hhhhhcCCCCCCCCCC--CCcceecccCCCCCCCCCCeEEEEecCCCcccCCCCChhhhhhhhhhhhhhheecccccccc
Confidence 9999999988776554 56899998876
Q ss_pred -------------------ccccCCCCCCCCCCCccCC--------CCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcc
Q psy6778 197 -------------------KQGGRCKCNGHASRCIKSP--------QGELVCECRHNTAGKDCEKCKPFFSDRPWGRATV 249 (314)
Q Consensus 197 -------------------~v~g~C~CnGHa~~C~~~~--------~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~ 249 (314)
.|.++|+|||||+.|++.. ...++|.|+|||+|.+||+|.++|++.||.+++.
T Consensus 230 ~~~~~~~~~~~~~Yai~di~v~grC~CnGHa~~C~p~~g~~~~~~g~~~g~C~C~~G~~G~~Ce~C~~g~~~~p~~~~~c 309 (525)
T 4aqs_A 230 LLDSRMEIREKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEG 309 (525)
T ss_dssp CTTCCHHHHTTCCCEEEEEEEEEECCCTTBCSCEECC------CCSCCCCEECCCTTEESSSSCEECTTCCSSCCCCCBT
T ss_pred cccccccccccccEEEEeeEECeEeccCCccccCCCcCCcccCCCCCcCccccCcCCCcCCCCcCCCCccCCCccCCCcc
Confidence 6889999999999998742 1246899999999999999999999999999888
Q ss_pred cCCCCccCCcccCCCCCCCcccC---------CCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778 250 YDANECKGGRCKCNGHASRCIKS---------PQGALVCECRHNTAGKDCEKCKPFFSDRPWGRAT 306 (314)
Q Consensus 250 ~~~~~C~~~~C~Cn~h~~~C~~~---------~~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~~~~~ 306 (314)
...+.|. .|+|++|+..|.++ ..+|+|..|.+++.|.+|++|++|||+++.....
T Consensus 310 ~~~~~~~--~C~C~~~~~~C~~d~~~c~~~~~~~gg~C~~C~~g~~G~~Ce~C~~g~~~~~~~~~~ 373 (525)
T 4aqs_A 310 RNSNACK--KCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIR 373 (525)
T ss_dssp TBCCCCC--CCCCTTSCSEEEECHHHHHHTTSSCCEEEESCCTTEESTTSCEECTTEEECSSSCTT
T ss_pred cCCCccc--ccccCCCCCCCCCCcccccccCccCCCcccCCCCCCCCCCcccccCcccccCCCCCC
Confidence 8888999 99999999999765 4588999999999999999999999998865443
No 5
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=100.00 E-value=5.9e-63 Score=471.90 Aligned_cols=223 Identities=35% Similarity=0.674 Sum_probs=196.6
Q ss_pred HhcccccCCCCCCccCCCcccCCCcchhhccCCceee---cCccCCCCCccccCCC--CCc-ccCCCCCCCCCCCCceec
Q psy6778 16 VCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKV---NSVCGLESPERYCDTS--GAC-HVCDAGSPRGRFPAEYLT 89 (314)
Q Consensus 16 ~~~~~~~~~~~~c~~~g~~~~C~P~~~nla~g~~v~a---ssTCG~~~~e~yC~~~--~~C-~~Cd~~~p~~~hp~~~~~ 89 (314)
+|+.+|.+...+=.| .++|.|+++|||.||+|.+ +||||+ +||+||++. .+| ++||+++|+++||+++|+
T Consensus 4 ~~~~~~~~~~~~~~~---~~~C~P~~~nla~~~~~~~~~~~sTCG~-~pe~yC~~~~~~~C~~~CDa~~p~~aHP~~~lt 79 (338)
T 3tbd_A 4 ICKSWVTTDEGPTWE---FYACQPKVMRLKDYVKVKVEPSGITCGD-PPERFCSHENPYLCSNECDASNPDLAHPPRLMF 79 (338)
T ss_dssp CSEEEEEETTEEEEE---ECCBCCCCEEGGGGCEEEEESTTCBSCS-SCEEECCSSCCSSCCEEECTTSTTTCCCGGGGS
T ss_pred hhhheeccccCCccc---ccccCCCccchhcCeeEEeccCCCCcCc-ChhhheecCCcccccccccCCCccccCCHHHhc
Confidence 466666555555444 3799999999999999998 799997 899999987 678 699999999999999999
Q ss_pred ccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEE-EEEeeeccCCCCCCceEEEeecCCCCCcccceeehhh
Q psy6778 90 DLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELT-YISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQ 168 (314)
Q Consensus 90 D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~-~v~l~f~~~s~rP~~~~iekS~D~g~tw~p~~yya~~ 168 (314)
|.++..+.|||||+++. ....+.+|||||||+|+|||+ ||+|+|+ ||||++|+||||+|+|+||+||||||.|
T Consensus 80 D~~~~~~~TwWQS~~~~----~~~~p~~VnlTL~L~k~felt~~iil~F~--spRP~sm~ierS~D~G~tW~P~QYfA~d 153 (338)
T 3tbd_A 80 DKEEEGLATYWQSITWS----RYPSPLEANITLSWNKTVELTDDVVMTFE--YGRPTVMVLEKSLDNGRTWQPYQFYAED 153 (338)
T ss_dssp SCCCTTCCCCEEBCCST----TTTSCCCEEEEEEEEEEEEECSCEEEEES--SCCCSEEEEEEESSTTSSCEEEEEEESS
T ss_pred cCCCCCCCceeccCccc----CCCCCccceEEEcCCCeEEEEEEEEeecC--CCCCCeEEEEeccCCCCCceeehhhhhh
Confidence 99998999999999974 123468899999999999999 7999999 9999999999999999999999999999
Q ss_pred hhcccCCCCcC--ccccCCCCCceecccCc--------------------------------------------------
Q psy6778 169 CKKLYGRTATG--VISRGNEQEALCTDRHK-------------------------------------------------- 196 (314)
Q Consensus 169 C~~~f~~~~~~--~~~~~~~~~~~Ct~~ys-------------------------------------------------- 196 (314)
|.+.|+|+++. .+...++++|+|++.||
T Consensus 154 C~~~Fg~~~~~~~~~~~~~~~eviCt~~yS~~~P~~~gg~v~f~v~~r~~~~~gP~~~~~~~~y~~~~~s~~Lqd~~taT 233 (338)
T 3tbd_A 154 CMEAFGMSARRARDMSSSSAHRVLCTEEYSRWAGSKKEKHVRFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLT 233 (338)
T ss_dssp HHHHHSCCBCCGGGCCGGGTTCCCEECTTTTTTTSSCCCEEEECSHHHHHHHHTTTTCCHHHHHHHHHHSTTHHHHTEEE
T ss_pred hHHhcCCCCccccCccCCCCCccEECCCCCCCCCCCCCceEEEEecccccccCCCccccccccccccccCHHHHHhhhhe
Confidence 99999998765 34556788899987653
Q ss_pred -------------------------------ccccCCCCCCCCCCCccCCCCceeeeCCCCCCCCCCccCCCCCCCCCCC
Q psy6778 197 -------------------------------KQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWG 245 (314)
Q Consensus 197 -------------------------------~v~g~C~CnGHa~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~ 245 (314)
.|+|+|+|||||+.|.++ .+.++|.|+|||+|++||+|+|+|+++||+
T Consensus 234 ~iRi~l~r~~~~~~~~~~~~~~~yyYAI~di~v~G~C~CnGHA~~C~~~-~g~~~C~C~HnT~G~~Ce~C~p~y~~~pw~ 312 (338)
T 3tbd_A 234 DLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCSMR-EGSLQCECEHNTTGPDCGKCKKNFRTRSWR 312 (338)
T ss_dssp EEEEEEEECCCTTSCCCTTCGGGCCCEEEEEECEEEECCTTBCSCEEEE-TTEEEECCCTTEESTTSCEECTTCBSSCCC
T ss_pred eeeeEeeccccCcccccccccceeEEEeecceeeccccccCCcCccCCC-CCCceecCCCCCCCCCCcccCccccCCCCC
Confidence 678999999999999986 466789999999999999999999999999
Q ss_pred CCcc
Q psy6778 246 RATV 249 (314)
Q Consensus 246 ~~t~ 249 (314)
+|+.
T Consensus 313 pg~~ 316 (338)
T 3tbd_A 313 AGSY 316 (338)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 9874
No 6
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=99.70 E-value=1.9e-18 Score=149.33 Aligned_cols=95 Identities=36% Similarity=0.755 Sum_probs=80.9
Q ss_pred CCCCCCCCCCccCC-CCceee-eCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCC-----CcccCCC
Q psy6778 202 CKCNGHASRCIKSP-QGELVC-ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHAS-----RCIKSPQ 274 (314)
Q Consensus 202 C~CnGHa~~C~~~~-~g~~~C-~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~-----~C~~~~~ 274 (314)
|.|++| .+|+... ++.++| .|++||+|++||+|++|||++|+... ..+..|+ +|+|+++++ .|. ..
T Consensus 1 C~C~~~-g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~--~~~~~C~--~C~C~~~~~~~~~~~C~--~~ 73 (162)
T 1klo_A 1 CPCPGG-SSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSN--GPVRLCR--PCQCNDNIDPNAVGNCN--RL 73 (162)
T ss_dssp CCSCTT-CCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTT--SSCEEEE--ECCSTTCBCTTCSCCBC--TT
T ss_pred CcCcCc-CcccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCccccc--CCCCCCe--eCcCCCCCCcccCCccc--CC
Confidence 789888 7898653 356899 79999999999999999999998643 3567899 999999864 564 56
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778 275 GALVCECRHNTAGKDCEKCKPFFSDRPWG 303 (314)
Q Consensus 275 ~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~~ 303 (314)
+|+|++|+++|+|++||+|++|||+++..
T Consensus 74 tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~~ 102 (162)
T 1klo_A 74 TGECLKCIYNTAGFYCDRCKEGFFGNPLA 102 (162)
T ss_dssp TCCBCCBCTTEETTTTCEECTTEEECTTC
T ss_pred CCcccCCCCCCcCCCcCcCchhhcCCccc
Confidence 89997899999999999999999998865
No 7
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=99.51 E-value=3.8e-15 Score=128.58 Aligned_cols=94 Identities=31% Similarity=0.697 Sum_probs=77.1
Q ss_pred cccCCCCCCCCC-----CCccCCCCceee-eCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCC----
Q psy6778 198 QGGRCKCNGHAS-----RCIKSPQGELVC-ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHAS---- 267 (314)
Q Consensus 198 v~g~C~CnGHa~-----~C~~~~~g~~~C-~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~---- 267 (314)
.+.+|.||+|++ .|++ .+++| .|++||+|.+||+|++|||+.+-.+ .....|+ +|+|+.+++
T Consensus 52 ~C~~C~C~~~~~~~~~~~C~~---~tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~~~---~~~~~C~--~C~C~~~Gs~~~~ 123 (162)
T 1klo_A 52 LCRPCQCNDNIDPNAVGNCNR---LTGECLKCIYNTAGFYCDRCKEGFFGNPLAP---NPADKCK--ACACNPYGTVQQQ 123 (162)
T ss_dssp EEEECCSTTCBCTTCSCCBCT---TTCCBCCBCTTEETTTTCEECTTEEECTTCS---SGGGSEE--ECCCCTTTBGGGC
T ss_pred CCeeCcCCCCCCcccCCcccC---CCCcccCCCCCCcCCCcCcCchhhcCCcccc---CCCCCCe--eccCCCCCccCCC
Confidence 456899999963 6874 34699 6999999999999999999987432 2335799 999998764
Q ss_pred -CcccCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778 268 -RCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPW 302 (314)
Q Consensus 268 -~C~~~~~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~ 302 (314)
.|. ..+|+| .|+.+++|++|++|++|||+...
T Consensus 124 ~~Cd--~~tG~C-~C~~g~~G~~Cd~C~~g~~g~~~ 156 (162)
T 1klo_A 124 SSCN--PVTGQC-QCLPHVSGRDCGTCDPGYYNLQS 156 (162)
T ss_dssp CCCC--TTTCCC-CBCTTEESTTCCEECTTCBCGGG
T ss_pred CCCC--CCCCEe-ECCCCCcCCCCCCCCCCcccCCC
Confidence 564 568999 79999999999999999999764
No 8
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=98.80 E-value=1.9e-09 Score=105.36 Aligned_cols=49 Identities=43% Similarity=0.968 Sum_probs=41.8
Q ss_pred CcccCCCCCCCcccCC----CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778 258 GRCKCNGHASRCIKSP----QGALVCECRHNTAGKDCEKCKPFFSDRPWGRATV 307 (314)
Q Consensus 258 ~~C~Cn~h~~~C~~~~----~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~~~~~~ 307 (314)
++|+||||++.|..+. ..|+| .|+|||+|.+||+|++|||++|.++.+.
T Consensus 264 g~C~CnGHA~~C~~~~~~~~~~g~C-~C~hnT~G~~CErC~pGy~g~p~~~at~ 316 (403)
T 2y38_A 264 GRCVCHGHADVCDAKDPLDPFRLQC-ACQHNTCGGSCDRCCPGFNQQPWKPATT 316 (403)
T ss_dssp EECCCTTBCSCEEESCTTSTTCEEE-CCCTTEESSSCCEECTTCCSSCCCCCCS
T ss_pred cccccCCCccccCCCCCCCccceEe-ECcCcCcCCCCCCCCccccCCccccccc
Confidence 4899999999997642 24789 7999999999999999999999876543
No 9
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=98.71 E-value=5.8e-09 Score=104.68 Aligned_cols=112 Identities=31% Similarity=0.685 Sum_probs=79.9
Q ss_pred ccccCCCCCCCCCCCccCC--------CCceee-eCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCC
Q psy6778 197 KQGGRCKCNGHASRCIKSP--------QGELVC-ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHAS 267 (314)
Q Consensus 197 ~v~g~C~CnGHa~~C~~~~--------~g~~~C-~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~ 267 (314)
.....|.|++|+..|..+. ...+.| .|+++|.|.+|++|+++|++.+-... .....+. +|.|+....
T Consensus 313 ~~~~~C~C~~~~~~C~~d~~~c~~~~~~~gg~C~~C~~g~~G~~Ce~C~~g~~~~~~~~~--~~~~~~~--~C~C~~~~~ 388 (525)
T 4aqs_A 313 NACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDI--RDPNLCE--PCTCDPAGS 388 (525)
T ss_dssp CCCCCCCCTTSCSEEEECHHHHHHTTSSCCEEEESCCTTEESTTSCEECTTEEECSSSCT--TCTTCEE--ECCCCTTTB
T ss_pred CcccccccCCCCCCCCCCcccccccCccCCCcccCCCCCCCCCCcccccCcccccCCCCC--CCCCCCc--CCCCCCCCC
Confidence 3456889999999987542 124567 89999999999999999998774322 2445566 788765432
Q ss_pred ----Cccc------CCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778 268 ----RCIK------SPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANEC 313 (314)
Q Consensus 268 ----~C~~------~~~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~~~~~~~~~~~C 313 (314)
.|.. +...+.| .|+.++.|.+|++|++|||+.+-.....++.+.|
T Consensus 389 ~~~~~C~~~~~~~~~~~~~~C-~C~~g~~G~~C~~C~~Gy~G~~c~~~~~C~~C~C 443 (525)
T 4aqs_A 389 ENGGICDGYTDFSVGLIAGQC-RCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCAC 443 (525)
T ss_dssp SGGGCCCCSCBGGGTBCSSCC-CBCTTEETTTTCEECTTEECCCTTSTTSSEECCC
T ss_pred CCCccccCCCCCCcCCCCCcc-CCCCCCCCCcccCCCCCCcCCCCCCCCCCccCCC
Confidence 2211 1235778 7999999999999999999987655444444433
No 10
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=98.57 E-value=1.2e-08 Score=97.56 Aligned_cols=49 Identities=47% Similarity=0.935 Sum_probs=44.5
Q ss_pred CcccCCCCCCCcccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778 258 GRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATV 307 (314)
Q Consensus 258 ~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~~~~~~ 307 (314)
|+|.||||++.|..+.+.++| .|+|||+|.+||+|++||++.|.++++.
T Consensus 268 G~C~CnGHA~~C~~~~g~~~C-~C~HnT~G~~Ce~C~p~y~~~pw~pg~~ 316 (338)
T 3tbd_A 268 GRCKCNLHANLCSMREGSLQC-ECEHNTTGPDCGKCKKNFRTRSWRAGSY 316 (338)
T ss_dssp EEECCTTBCSCEEEETTEEEE-CCCTTEESTTSCEECTTCBSSCCCCCBC
T ss_pred ccccccCCcCccCCCCCCcee-cCCCCCCCCCCcccCccccCCCCCCCCc
Confidence 589999999999876555789 8999999999999999999999998864
No 11
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Probab=98.50 E-value=2.4e-07 Score=79.54 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=68.6
Q ss_pred CcchhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCCCce
Q psy6778 39 PDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNV 118 (314)
Q Consensus 39 P~~~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~v 118 (314)
|...|||+|+++.|||+=+ .+++++++|++ ..|+|.|... ...-
T Consensus 24 ~~~~NLA~~k~ataSs~~~------------------------~~~a~~AvDGn---~~T~W~s~~~---------~~~~ 67 (161)
T 4a3z_A 24 ANYVNIAENKNVSGSNSQS------------------------GNPLSNITDGD---LSSLWISDNG---------AMPA 67 (161)
T ss_dssp --CCBTTTTCCEEESCBCT------------------------TCCGGGGSSSC---TTCCEEBGGG---------CSSE
T ss_pred CCcccccCCCceEEeCCcC------------------------CCChhhcCcCC---CCCeEEcCCC---------CCCe
Confidence 5578999999999997643 25688999988 5789998754 2357
Q ss_pred eeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCCCcccc
Q psy6778 119 TLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPL 162 (314)
Q Consensus 119 titl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~tw~p~ 162 (314)
-|+|||++.+.|..|.|.|. ...+.....||-|.| |.+|++.
T Consensus 68 Wi~VDLg~~~~v~~v~i~~~-~~~~~~~y~IevS~D-g~~W~~v 109 (161)
T 4a3z_A 68 NATIDLEGNNFVDFLELHFE-KEGFRFQFKVEVEDE-SGNRETV 109 (161)
T ss_dssp EEEEEEEEEEEEEEEEEECS-STTCCEEEEEEEECT-TCCEEEE
T ss_pred EEEEECCCcEEEeEEEEEEC-CCCceEEEEEEEEcC-CCCEEEE
Confidence 89999999999999999998 233567899999987 8899864
No 12
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.44 E-value=5.4e-08 Score=95.64 Aligned_cols=48 Identities=46% Similarity=1.001 Sum_probs=42.9
Q ss_pred CcccCCCCCCCcccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778 258 GRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRAT 306 (314)
Q Consensus 258 ~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~~~~~ 306 (314)
|+|.||||++.|..+.++++|. |++||+|++||+|++|||++|..+++
T Consensus 295 g~C~CnGHas~C~~~~g~~~C~-C~~~ttG~~CE~C~pgy~~~P~~~gt 342 (426)
T 3zyj_B 295 GRCKCNLHATVCVYDNSKLTCE-CEHNTTGPDCGKCKKNYQGRPWSPGS 342 (426)
T ss_dssp EEECCSSSCSCEEEETTEEEEC-CCTTEESSSSCEECTTCCSSCCCCCB
T ss_pred ccCcCCCchhhcCCCCCCceee-CCCCCcCCCccccccccccCcccCCc
Confidence 3899999999998765568995 99999999999999999999988765
No 13
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=98.40 E-value=1.2e-07 Score=92.02 Aligned_cols=56 Identities=66% Similarity=1.381 Sum_probs=45.4
Q ss_pred CcccCCCCCCCcccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778 258 GRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANEC 313 (314)
Q Consensus 258 ~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~~~~~~~~~~~C 313 (314)
+.|.||+|++.|..+..++.|..|++||+|++||+|++|||++|..+++......|
T Consensus 253 g~C~Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C 308 (375)
T 4aqt_A 253 GRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASEC 308 (375)
T ss_dssp EEECCTTSCSCEEECTTSCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCC
T ss_pred ceecCCCCCcccCCCCCCCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCC
Confidence 47999999999976654444448999999999999999999999877765544444
No 14
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=97.93 E-value=3.7e-06 Score=82.55 Aligned_cols=78 Identities=28% Similarity=0.629 Sum_probs=58.9
Q ss_pred CCCCCCCCccCCCCceeeeCCCCCCCCCCcc-CCCCCCCCCCCCCcccCCCCccCCcccCCCC---CCCcccCCCCcccc
Q psy6778 204 CNGHASRCIKSPQGELVCECRHNTAGKDCEK-CKPFFSDRPWGRATVYDANECKGGRCKCNGH---ASRCIKSPQGALVC 279 (314)
Q Consensus 204 CnGHa~~C~~~~~g~~~C~C~~nT~G~~Ce~-C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h---~~~C~~~~~~G~C~ 279 (314)
|.+| ..|+. +.++|.|+.+++|.+||+ |.++||+.+ |.. +|.+++. ...|. ..+++|
T Consensus 205 C~~~-G~C~~---~~g~C~C~~G~~G~~Ce~~C~~g~~g~~-----------C~~-~C~~~~~C~~~g~C~--~~~~~C- 265 (423)
T 2gy5_A 205 CMNN-GVCHE---DTGECICPPGFMGRTCEKACELHTFGRT-----------CKE-RCSGQEGCKSYVFCL--PDPYGC- 265 (423)
T ss_dssp CCTT-CEECT---TTCCEECCTTEESTTSCEECCTTEESTT-----------SCE-ECCSTTTTTTCCEEE--TTTTEE-
T ss_pred CCCC-CEEEC---CCCcEeCCCCccCCCcccccCCCCCCCC-----------cCc-cCCCCCCCCCCCEEC--CCCCeE-
Confidence 6666 56874 346999999999999997 999998742 431 3544321 23454 457899
Q ss_pred CCCCCCCCCCCCC-CCCCCCCC
Q psy6778 280 ECRHNTAGKDCEK-CKPFFSDR 300 (314)
Q Consensus 280 ~C~~nt~G~~Ce~-C~~Gyy~~ 300 (314)
.|..+++|.+|+. |.+|||++
T Consensus 266 ~C~~G~~G~~C~~~C~~G~~G~ 287 (423)
T 2gy5_A 266 SCATGWKGLQCNEACHPGFYGP 287 (423)
T ss_dssp ECCBTCBSGGGCBCCCTTBCSB
T ss_pred EeCCCcccccccCccCCCCcCC
Confidence 7999999999997 99999985
No 15
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*
Probab=97.64 E-value=0.0001 Score=62.00 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=63.8
Q ss_pred cchhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCCCcee
Q psy6778 40 DFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVT 119 (314)
Q Consensus 40 ~~~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vt 119 (314)
...|||+|+++.+||+-+. +++++++|++ ..|.|.+..-. . .....+--
T Consensus 8 ~~~NlA~~k~ataSS~~~~------------------------~~a~~AvDG~---~~t~W~~~~ct--~--t~~~~~~W 56 (153)
T 3lei_A 8 ETENIARGKQASQSSTAYG------------------------GAATRAVDGN---VDSDYGHHSVT--H--TNFEDNAW 56 (153)
T ss_dssp CSCCTTTTCEEEESCCCTT------------------------CCGGGGGSSC---CCCCGGGTCSC--C--CCSBTTCE
T ss_pred CCcccCCCCCeeECCCcCC------------------------CCccccccCC---CCCccccCccc--c--CCCCCCCe
Confidence 3579999999999987652 4678899988 46789874321 0 01124567
Q ss_pred eEeecCceeEEEEEEeeecc-C---CCCCCceEEEeecCCCCCccc
Q psy6778 120 LTLSLGKKFELTYISLSFCP-K---SIKPDSLAIYKSQDFGKSWQP 161 (314)
Q Consensus 120 itl~l~~~f~~~~v~l~f~~-~---s~rP~~~~iekS~D~g~tw~p 161 (314)
|+|||++.+.|..|.| +.. + ..|-...-|+-|.+.|.+|..
T Consensus 57 ~~VDLg~~~~v~~V~i-~~~~d~~~~~r~~~~~I~vs~~dg~~w~~ 101 (153)
T 3lei_A 57 WQVDLGKTENVGKVKL-YNRGDGNVANRLSNFDVVLLNEAKQEVAR 101 (153)
T ss_dssp EEEEEEEEEEEEEEEE-EECCSTTCGGGSCSEEEEEECTTCCEEEE
T ss_pred EEEECCCceEEeEEEE-EeCCCCcccccceeEEEEEECCCCCcccc
Confidence 9999999999999999 541 1 124456777777666888975
No 16
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}
Probab=97.61 E-value=7.8e-05 Score=62.61 Aligned_cols=82 Identities=26% Similarity=0.351 Sum_probs=61.5
Q ss_pred chhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCCCceee
Q psy6778 41 FVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTL 120 (314)
Q Consensus 41 ~~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vti 120 (314)
-.|||++++..++++=. ..++++++|++ ..|+|.+... ..-.+
T Consensus 23 ~~NlAl~~~a~~s~~~~------------------------~g~a~~aiDGn---~~T~W~s~~~----------~~p~~ 65 (149)
T 4a42_A 23 SENLAMKDETKVEVTSN------------------------NSEANNLRDGN---ENTLWVPGQE----------EEKSV 65 (149)
T ss_dssp CEEGGGSTTCEEEESSC------------------------GGGGGGGGSSC---TTSCBCCCSC----------SSEEE
T ss_pred ccccccCCCceEEEEcC------------------------CCChHhcEeCC---CCCEEEcCCC----------CCCeE
Confidence 46899998766653321 13567899987 4789987542 12345
Q ss_pred EeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCCCcccc
Q psy6778 121 TLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPL 162 (314)
Q Consensus 121 tl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~tw~p~ 162 (314)
+|||++++.|..|.|++. ...+....||-|.| |.+|+.+
T Consensus 66 ~VDLg~~~~V~~v~i~~~--r~~v~~y~I~~S~D-G~~W~~~ 104 (149)
T 4a42_A 66 TFDLSKEKDISAIDIVSK--GNSPLKYSIEISND-GTEWTKI 104 (149)
T ss_dssp EEEEEEEEECCEEEEEEC--SSSCCCEEEEEESS-SSSCEEE
T ss_pred EEECCCcEEEEEEEEEcC--CCCcEEEEEEEEcC-CCeEeEe
Confidence 999999999999999776 55588899999988 8999874
No 17
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A
Probab=97.59 E-value=0.0001 Score=61.45 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=54.4
Q ss_pred CCCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCC-CCCc
Q psy6778 81 GRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDF-GKSW 159 (314)
Q Consensus 81 ~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~-g~tw 159 (314)
..||+++|.|++ ..|+|.|+.+ ..-.|+|+|++...|..|.|++. ++....||.|.|. .+.|
T Consensus 25 ~~~~~~~~iDg~---~~T~W~s~g~----------~pq~i~I~~~~~~~is~~~i~~~----~~k~~~ie~s~~~~p~~w 87 (139)
T 2yc2_A 25 ERFPPENMLDGK---DNTFWVTTGM----------FPQEFVLRLESCIRVSKITTLSL----NVRKLAVEKCDQDKPDQF 87 (139)
T ss_dssp TTSCGGGGGSSC---TTCCEECCSS----------SCEEEEEEEEEEEEEEEEEEEEE----SEEEEEEEEECSSSCCCC
T ss_pred CCCChhheECCC---CCCEEeCCCC----------CCeEEEEECCCceEEEEEEEEec----CCcEEEEEEecCCCCCce
Confidence 479999999987 5799999654 24578899999999999999988 6899999999883 2789
Q ss_pred ccc
Q psy6778 160 QPL 162 (314)
Q Consensus 160 ~p~ 162 (314)
+.+
T Consensus 88 ~~i 90 (139)
T 2yc2_A 88 EKV 90 (139)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 18
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A
Probab=97.58 E-value=0.00013 Score=59.45 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=54.5
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCCCccc
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQP 161 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~tw~p 161 (314)
.|.+.+++|++ ..|+|.+.. . ..|+|||++++.|..|.|++.....+|..+.|+-|.| |.+|++
T Consensus 23 ~~~~~~a~Dg~---~~t~W~~~~-----------~-~~l~vDLg~~~~v~~v~i~~~~~~~~~~~~~i~~S~D-g~~w~~ 86 (145)
T 2jda_A 23 GHVPANIADGD---VKTRWAASG-----------E-SWVQLELDKEQSIENILIVPFKPTERKLKFSIFYSND-GKNWQP 86 (145)
T ss_dssp TBCGGGGGSSC---TTCCEEEES-----------S-EEEEEEEEEEEEEEEEEEEESSTTTCCEEEEEEEESS-SSSCEE
T ss_pred CCCchhcccCC---CCCeECCCC-----------C-eeEEEECCCceEEEEEEEEeccCCCceEEEEEEEeCC-CCceEE
Confidence 47788999987 368998742 1 7799999999999999999973334899999999988 889987
Q ss_pred cee
Q psy6778 162 LQF 164 (314)
Q Consensus 162 ~~y 164 (314)
+.-
T Consensus 87 ~~~ 89 (145)
T 2jda_A 87 LAE 89 (145)
T ss_dssp EEE
T ss_pred eee
Confidence 643
No 19
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=0.00011 Score=73.04 Aligned_cols=85 Identities=19% Similarity=0.314 Sum_probs=68.6
Q ss_pred hhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeE
Q psy6778 42 VNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLT 121 (314)
Q Consensus 42 ~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtit 121 (314)
.|||.|++|+|||+-|. .+.+++++|++ ..|+|.+... ...-.|+
T Consensus 325 ~NLA~~~~vtASS~~~~-----------------------~~~~~~a~Dgd---~~TyW~a~~~---------~~~~wl~ 369 (469)
T 3eyp_A 325 TNLLRGAKVKATNVRGA-----------------------KYSPEKMLDNE---KNTYFAGKDG---------EVKADII 369 (469)
T ss_dssp CCTTTTCEEEESSCCCG-----------------------GGCGGGGGSCC---SSCCEECCTT---------CCCEEEE
T ss_pred cchhcCCceEEeeccCC-----------------------CCChhhcccCC---CCceEeCCCC---------CCCcEEE
Confidence 48999999999987762 36788999987 5899999765 2356899
Q ss_pred eecCceeEEEEEEeeecc-CCCCCCceEEEeecCCCCCcccc
Q psy6778 122 LSLGKKFELTYISLSFCP-KSIKPDSLAIYKSQDFGKSWQPL 162 (314)
Q Consensus 122 l~l~~~f~~~~v~l~f~~-~s~rP~~~~iekS~D~g~tw~p~ 162 (314)
|||+++..|..|.|+-.+ ..-|=.+..||-|.| |++|++.
T Consensus 370 vDLg~~~~vn~V~lqe~i~~gqrv~~y~Ve~s~D-G~~W~~v 410 (469)
T 3eyp_A 370 FTLPKTIEFDCLMIEEVIELGHRTTKWSVEYTVD-GKNWITI 410 (469)
T ss_dssp EEEEEEEEEEEEEEEECGGGCSCEEEEEEEEESS-SSCCEEC
T ss_pred EECCCCcEEeEEEEeecccCCCCeEEEEEEEEcC-CCceEEE
Confidence 999999999999998552 145667899999987 8899863
No 20
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=97.53 E-value=0.00015 Score=61.76 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=54.0
Q ss_pred CCCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCC--C
Q psy6778 81 GRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGK--S 158 (314)
Q Consensus 81 ~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~--t 158 (314)
..|++++|.|++ ..|+|.|+.+ ..-.|+|+|++...|.-|.|++. +.....||+|.| |+ .
T Consensus 33 ~~~~~~~~iDgn---~~T~W~t~g~----------~Pq~i~Idf~k~~~is~~~i~~~----~vk~~~ie~s~d-~~p~~ 94 (153)
T 1tvg_A 33 EKHPPENIIDGN---PETFWTTTGM----------FPQEFIICFHKHVRIERLVIQSY----FVQTLKIEKSTS-KEPVD 94 (153)
T ss_dssp TTSCGGGGGSSC---TTCCEECCSC----------SSEEEEEEEEEEEEEEEEEEEEE----SEEEEEEEEECS-SSSCC
T ss_pred cccCHHHcCcCC---CCceEECCCC----------CCcEEEEECCCceEEEEEEEEec----CCEEEEEEEECC-CCCcc
Confidence 578999999987 5799999654 24578899999999999999988 689999999987 65 8
Q ss_pred cccc
Q psy6778 159 WQPL 162 (314)
Q Consensus 159 w~p~ 162 (314)
|+..
T Consensus 95 w~~i 98 (153)
T 1tvg_A 95 FEQW 98 (153)
T ss_dssp CEEE
T ss_pred eEEe
Confidence 9875
No 21
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=97.50 E-value=0.00014 Score=77.32 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=67.7
Q ss_pred CcchhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCCCce
Q psy6778 39 PDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNV 118 (314)
Q Consensus 39 P~~~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~v 118 (314)
+.-.|||.|++|+|||+=+ .|++++++|++ ..|+|.|. . ...
T Consensus 22 ~~~~NLA~gk~vTASS~~~------------------------g~~p~nAvDGn---~~T~WsS~-~----------~~q 63 (914)
T 4a4a_A 22 ASGVEITEGVTVTAKGNTE------------------------GNTADLAIDGD---LSTYWESS-N----------DYK 63 (914)
T ss_dssp --CCBCCSSCEEEESCCCT------------------------TCCGGGGSSSC---TTCCEECC-S----------SCC
T ss_pred CccccccCCCceEEeccCC------------------------CCcHHHeECCC---CCCeEecC-C----------CCc
Confidence 3467999999999997643 37889999987 57899997 2 136
Q ss_pred eeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCCCccccee
Q psy6778 119 TLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQF 164 (314)
Q Consensus 119 titl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~tw~p~~y 164 (314)
.|+|||++.+.|+.|.|+-. ..+..+..||-|.| |++|+++.-
T Consensus 64 WLqVDLG~~~~V~~V~l~~~--~~~v~~Y~Ie~S~D-G~~Wt~v~~ 106 (914)
T 4a4a_A 64 WIEVDLGGIYELSKIEIFNK--DEAVYKYNIYASED-GENFNKIAY 106 (914)
T ss_dssp EEEEEEEEEEEEEEEEEECS--SSSCEEEEEEEESS-SSCCEEEEE
T ss_pred eEEEECCCeEEEEEEEEEec--CCceEEEEEEEEcC-CCCeEEEEE
Confidence 79999999999999999644 55677899999998 999997643
No 22
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=97.49 E-value=4.5e-05 Score=74.82 Aligned_cols=61 Identities=30% Similarity=0.686 Sum_probs=47.8
Q ss_pred CceeeeCCCCCCCCCCcc-CCCCCCCCCCCCCcccCCCCccCCcccCCCCCCCcccCCCCccccCCCCCCCCCCCCCCC
Q psy6778 217 GELVCECRHNTAGKDCEK-CKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCK 294 (314)
Q Consensus 217 g~~~C~C~~nT~G~~Ce~-C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~G~~Ce~C~ 294 (314)
+.++|.|+.+++|.+|+. |.+||++. .|.. +|.|+++ ..|.. ..+ | .|+.+++|.+||++.
T Consensus 261 ~~~~C~C~~G~~G~~C~~~C~~G~~G~-----------~C~~-~C~C~ng-g~C~~--~~~-C-~C~~G~~G~~Ce~~~ 322 (423)
T 2gy5_A 261 DPYGCSCATGWKGLQCNEACHPGFYGP-----------DCKL-RCSCNNG-EMCDR--FQG-C-LCSPGWQGLQCEREG 322 (423)
T ss_dssp TTTEEECCBTCBSGGGCBCCCTTBCSB-----------TTCC-BCCCTTC-CEEET--TTE-E-ECCTTCBSTTSCBCS
T ss_pred CCCeEEeCCCcccccccCccCCCCcCC-----------cccc-cccCCCC-CEecC--CCc-e-ECCCCCcCCCCccCc
Confidence 356899999999999997 99999973 4642 5778754 46752 234 8 799999999999983
No 23
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Probab=97.47 E-value=0.00021 Score=60.54 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=56.1
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC--CCCCCceEEEeecCCCCCc
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSW 159 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~--s~rP~~~~iekS~D~g~tw 159 (314)
.+++++++|++ ..|+|.|.... .......|+|||++++.|..|.++...+ ..+|....|+-|.| |.+|
T Consensus 44 ~~~~~~a~DG~---~~T~W~s~~~~------~~~~p~~i~iDLg~~~~I~~v~~~~r~~~~~~~~~~y~I~~S~D-G~~W 113 (161)
T 4a41_A 44 EGLAKFAIDGK---ENTIWHTKYNP------VEELPQSITLELGGSYEINKFTYLPRSGAKNGNITKYELHVSED-GNNF 113 (161)
T ss_dssp CCCGGGGGSSC---TTCCEECCTTT------TCCSCEEEEEEEEEEEEEEEEEEECCSSCCTTCEEEEEEEEESS-SSCE
T ss_pred CCcHHHcCcCC---CCCeEEeCCCC------CCCCCEEEEEEcCCCEEEeEEEEEecCCCCCCcEEEEEEEEECC-CCce
Confidence 37899999988 47899996531 1134688999999999999999887521 34788899999988 8999
Q ss_pred ccce
Q psy6778 160 QPLQ 163 (314)
Q Consensus 160 ~p~~ 163 (314)
+.+.
T Consensus 114 ~~v~ 117 (161)
T 4a41_A 114 RKIS 117 (161)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9753
No 24
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=97.40 E-value=0.0004 Score=58.20 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=57.2
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC--CCCCCceEEEeecCCCCCc
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSW 159 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~--s~rP~~~~iekS~D~g~tw 159 (314)
..++++++|++ ..|+|.|.... ........|+|||++++.|..|.+++..+ ..+|..+.|+-|.| |.+|
T Consensus 27 ~g~~~~a~DG~---~~T~W~s~~~~-----~~~~~p~~i~vDLg~~~~i~~v~~~~~~~~~~~~~~~~~I~~S~D-g~~W 97 (159)
T 3f2z_A 27 NGHAKHLIDGN---IETFWHSRWQG-----GSDPLPYEIIIDMNHRVKIAQIELLPRGRGSNNPIKVVRFEASED-GTNW 97 (159)
T ss_dssp SBSGGGGSSSC---TTCCEECCCTT-----CCCCSCEEEEEEEEEEEEEEEEEEEECCTTCCCCCCEEEEEEESS-SSSC
T ss_pred CCcHHhcCCCC---CCCeEEcCCcC-----CCCCCCEEEEEECCCceEEEEEEEEecCCCCCCCeeEEEEEEEcC-CCCe
Confidence 46899999987 46899986531 01134578999999999999999987632 35889999999988 8999
Q ss_pred cccee
Q psy6778 160 QPLQF 164 (314)
Q Consensus 160 ~p~~y 164 (314)
+.+.-
T Consensus 98 ~~v~~ 102 (159)
T 3f2z_A 98 ESIGQ 102 (159)
T ss_dssp EEEEE
T ss_pred EEeEE
Confidence 97543
No 25
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*
Probab=97.28 E-value=0.00073 Score=57.17 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=62.4
Q ss_pred chhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCCCceee
Q psy6778 41 FVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTL 120 (314)
Q Consensus 41 ~~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vti 120 (314)
-.|||+|+++.+||+-. .+++++++|++ ..|.|.+..-.. .....+--|
T Consensus 9 ~~NlA~~k~ataSS~~~------------------------~~~a~~AvDG~---~~t~w~~~sct~----t~~~~~~W~ 57 (153)
T 4gwi_A 9 TENIARGKQASQSSTAH------------------------GGAATRAVDGN---VDSDYGHHSVTH----TNFEDNAWW 57 (153)
T ss_dssp SCCTTTTCEEEESCCCT------------------------TCCGGGGGSSC---CCCCGGGTCCCC----CCSBTTCEE
T ss_pred ccccCCCCceEEcCCCC------------------------CCCcceeEcCC---CCCccccccccc----CCCCCCCEE
Confidence 47999999999998743 25688899988 467898643110 011245679
Q ss_pred EeecCceeEEEEEEeeeccC---CCCCCceEEEeecCCCCCccc
Q psy6778 121 TLSLGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKSWQP 161 (314)
Q Consensus 121 tl~l~~~f~~~~v~l~f~~~---s~rP~~~~iekS~D~g~tw~p 161 (314)
+|||++.+.|..|.|....+ ..|-..+-|+-+.+.|.+|..
T Consensus 58 ~VDLg~~~~v~~V~i~nr~d~~~~~r~~~~~I~v~s~dg~~w~~ 101 (153)
T 4gwi_A 58 QVDLGKTENVGKVKLYNRGDGNVANRLSNFDVVLLNEAKQEVAR 101 (153)
T ss_dssp EEEEEEEEEEEEEEEEECCSTTCGGGSCSEEEEEECTTSCEEEE
T ss_pred EEECCCCEEEEEEEEEcccCCchhhcccceEEEEECCCCCeeee
Confidence 99999999999999974421 235555666555444889975
No 26
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Probab=97.25 E-value=0.00043 Score=56.25 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=55.3
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC--CCCCCceEEEeecCCCCCc
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSW 159 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~--s~rP~~~~iekS~D~g~tw 159 (314)
.+++++++|++. .|+|.|.... ........|+|||++++.|..|.|++..+ ..+|..+.|+-|.| |.+|
T Consensus 25 ~~~~~~~~DG~~---~t~w~s~~~~-----~~~~~~~~l~iDLg~~~~i~~v~~~~~~~~~~~~~~~~~i~~S~D-g~~w 95 (150)
T 2j1a_A 25 NAPASFASDGDM---NTFWHSKWSS-----PAHEGPHHLTLELDNVYEINKVKYAPRQDSKNGRITGYKVSVSLD-GENF 95 (150)
T ss_dssp CBCGGGGSSSCT---TCCEECCCSS-----SCCCSCCEEEEEEEEEEEEEEEEEECCSSCCTTEEEEEEEEEESS-SSSE
T ss_pred CCcHHhcCcCCC---CCcEEccccC-----CCCCCCeEEEEECCCCeEEeEEEEeecCCCCCCCEEEEEEEEEcC-CCce
Confidence 478899999873 6899886531 01234678999999999999999987632 34678899999988 8899
Q ss_pred ccc
Q psy6778 160 QPL 162 (314)
Q Consensus 160 ~p~ 162 (314)
+..
T Consensus 96 ~~v 98 (150)
T 2j1a_A 96 TEV 98 (150)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 27
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.00055 Score=59.19 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=56.9
Q ss_pred CCCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC------CCCCCceEEEeecC
Q psy6778 81 GRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK------SIKPDSLAIYKSQD 154 (314)
Q Consensus 81 ~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~------s~rP~~~~iekS~D 154 (314)
..|++++|+|++ ..|+|.+.... ..+..-.|+|||+++..|..|.+....+ ...|..+-|+-|.|
T Consensus 37 ~G~~~~~liDgn---~~T~Wht~w~~------~~~~P~~itIDLg~~~~v~~~~~~~r~~~~~~~~~g~ik~~~I~~S~D 107 (172)
T 3hnm_A 37 MGWGVESLIDNN---PGTQWLCRWDV------KEPLPYYFVFDMGKEYTLFRFGFANPVAPAAHVWAGTSKAGYVEASID 107 (172)
T ss_dssp TSCSGGGGSSSC---TTSCEECCCSS------CCCSCEEEEEEEEEEEEEEEEEEECCCSSCTTSTTCCEEEEEEEEESS
T ss_pred cCccHHHcCCCC---CCCeEEecCCC------CCCCCEEEEEECCCceEEeEEEEEecCCCCcccCCCCeEEEEEEEEeC
Confidence 357899999987 46999983220 1133567999999999999998877743 24788899999999
Q ss_pred CCCCcccceee
Q psy6778 155 FGKSWQPLQFY 165 (314)
Q Consensus 155 ~g~tw~p~~yy 165 (314)
|.+|+...-+
T Consensus 108 -g~~W~~v~~~ 117 (172)
T 3hnm_A 108 -NENWVKLKDW 117 (172)
T ss_dssp -SSCEEEEECC
T ss_pred -CCCeEEeEEE
Confidence 7899976544
No 28
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.0011 Score=56.26 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=56.5
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC--CCCCCceEEEeecCCCCCc
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSW 159 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~--s~rP~~~~iekS~D~g~tw 159 (314)
.-++++++|++ ..|+|.|.... ........|+|||++++.|..|.++...+ ..+|..+.|+-|.| |.+|
T Consensus 37 ~g~~~~a~DG~---~~T~W~s~~~~-----~~~~~p~wi~vDLg~~~~i~~v~~~~r~~~~~~~~~~y~I~~S~D-g~~W 107 (169)
T 3ggl_A 37 NGLAKCLIDGD---TETFWHAKWQG-----GSDPLPYDIVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASED-NVNW 107 (169)
T ss_dssp CBSGGGGGSSC---SSCCEECCCSS-----CCCCSCEEEEEEEEEEEEEEEEEEEECCTTCCCCCCEEEEEEESS-SSCC
T ss_pred CCcHHhcCCCC---CCCceEccCcC-----CCCCCCEEEEEECCCcEEEeEEEEEecCCCCCCCeeEEEEEEeCC-CCCc
Confidence 35788999987 46889886431 01134578999999999999999887632 46899999999988 8999
Q ss_pred cccee
Q psy6778 160 QPLQF 164 (314)
Q Consensus 160 ~p~~y 164 (314)
+.+.-
T Consensus 108 ~~v~~ 112 (169)
T 3ggl_A 108 TPIGR 112 (169)
T ss_dssp EEEEE
T ss_pred EEeEE
Confidence 98643
No 29
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15
Probab=96.82 E-value=0.0035 Score=52.87 Aligned_cols=88 Identities=15% Similarity=0.033 Sum_probs=59.2
Q ss_pred CcchhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCC-CCCceecccCCCCCceeeccCCcccCCcCCCCCCc
Q psy6778 39 PDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGR-FPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDN 117 (314)
Q Consensus 39 P~~~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~-hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~ 117 (314)
|+..|||+|+++.+||+-... ... .++++++|++ ..|.|.|..-.. .....+
T Consensus 6 ~~~~NlA~gk~a~aSS~~~~~--------------------~~~~~~a~~AvDGn---~~t~w~s~sc~~----T~~~~~ 58 (158)
T 1k12_A 6 YTQENVAVRGKATQSAQLRGE--------------------HAANSEASNAIDGN---RDSNFYHGSCTH----SSGQAN 58 (158)
T ss_dssp EEEEEGGGGSEEEESCBCCST--------------------TGGGCCGGGGGSSC---CCCCGGGSCSCC----BCSCSS
T ss_pred CCcccccCCCeeEECcccCCC--------------------CcccCCccccCcCC---CCCccccccEec----CCCCCC
Confidence 446799999999999987630 001 2578899988 467898764210 011234
Q ss_pred eeeEeecCceeEEEEEEeeeccC--CCCCCceEEEeec
Q psy6778 118 VTLTLSLGKKFELTYISLSFCPK--SIKPDSLAIYKSQ 153 (314)
Q Consensus 118 vtitl~l~~~f~~~~v~l~f~~~--s~rP~~~~iekS~ 153 (314)
--|+|||++.+.|..|.|....+ ..|-..+-|+-+.
T Consensus 59 ~W~~VDLg~~~~V~~V~i~~r~d~~~~r~~~~~i~v~~ 96 (158)
T 1k12_A 59 PWWRVDLLQVYTITSVTITNRGDCCGERISGAEINIGQ 96 (158)
T ss_dssp CEEEEEEEEEEEEEEEEEEECSSSCTTTTTTCEEEEES
T ss_pred CEEEEECCCceEEeEEEEEeCCCcCccccCCEEEEEEc
Confidence 57999999999999999987522 3355555555544
No 30
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A*
Probab=96.62 E-value=0.0056 Score=51.38 Aligned_cols=87 Identities=11% Similarity=0.025 Sum_probs=61.8
Q ss_pred CCCcchhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCCC
Q psy6778 37 CIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPD 116 (314)
Q Consensus 37 C~P~~~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~ 116 (314)
-.|+..|||+|+++.+||+-+. .++++++|++. .|.|.+.+-.. .....
T Consensus 11 ~~~~~~NlAlgk~at~SS~~~~------------------------~~a~~AvDGn~---~t~w~~~sct~----t~~~~ 59 (151)
T 2j1v_A 11 FNDGNLNIAYAKPTTQSSVDYN------------------------GDPNRAVDGNR---NGNFNSGSVTH----TRADN 59 (151)
T ss_dssp EETTEECTTTTCCEEESCCCTT------------------------CCGGGGGSSCC---CCCGGGTCCCC----CCSCT
T ss_pred CCCCCccccCCCCeeECCCCCC------------------------CCcCccEeCCC---cCccccccccc----CCCCC
Confidence 3466789999999999988542 35788999984 56787643210 01134
Q ss_pred ceeeEeecCceeEEEEEEeeeccC--CCCCCceEEEeecC
Q psy6778 117 NVTLTLSLGKKFELTYISLSFCPK--SIKPDSLAIYKSQD 154 (314)
Q Consensus 117 ~vtitl~l~~~f~~~~v~l~f~~~--s~rP~~~~iekS~D 154 (314)
+--++|||++.+.|..|.|....+ ..|-..+-|+-|.|
T Consensus 60 ~~W~~VDLg~~~~V~~V~i~~r~d~~~~r~~~~~I~v~~~ 99 (151)
T 2j1v_A 60 PSWWEVDLKKMDKVGLVKIYNRTDAETQRLSNFDVILYDN 99 (151)
T ss_dssp TCEEEEEEEEEEEEEEEEEEECCSSCGGGSCSEEEEEECT
T ss_pred CCEEEEECCCCeEcCEEEEEcCCCccccccCCEEEEEECC
Confidence 567899999999999999986522 23666677777766
No 31
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=96.57 E-value=0.0032 Score=58.07 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=60.6
Q ss_pred chhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCCCC-CceecccCCCCCceeeccCCcccCCcCCCCCCcee
Q psy6778 41 FVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFP-AEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVT 119 (314)
Q Consensus 41 ~~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp-~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vt 119 (314)
..|||+|+++.+||+-+. .++ +++++|++ ..|+|.+..-.. .....+--
T Consensus 3 ~~NlA~~k~a~aSS~~~~-----------------------~~~~a~~AvDG~---~~t~W~s~~c~~----t~~~~~~W 52 (293)
T 3cqo_A 3 YKNVALRGKATQSARYLH-----------------------THGAAYNAIDGN---RNSDFEAGSCTH----TVEQTNPW 52 (293)
T ss_dssp CEEGGGGSEEEESSBCSS-----------------------TTCCGGGGGSSC---CCCCGGGSCSCC----BCSBSSCE
T ss_pred CcccCCCCceeECcCCCC-----------------------CCCCcCccccCC---CCCccCCCceec----CCCCCCCE
Confidence 479999999999988762 245 78899988 468999875210 01123457
Q ss_pred eEeecCceeEEEEEEeeeccC----CCCCCceEEEeecCCCCCc
Q psy6778 120 LTLSLGKKFELTYISLSFCPK----SIKPDSLAIYKSQDFGKSW 159 (314)
Q Consensus 120 itl~l~~~f~~~~v~l~f~~~----s~rP~~~~iekS~D~g~tw 159 (314)
|+|||++.+.|..|.|.+..+ ...+..+.|+.|.| +.+|
T Consensus 53 ~~VDLg~~~~v~~V~i~~r~d~~~~~~~~~~i~v~~s~d-~~~~ 95 (293)
T 3cqo_A 53 WRVDLLEPYIVTSITITNRGDCCPERLNGVEIHIGNSLQ-ENGV 95 (293)
T ss_dssp EEEEEEEEEEEEEEEEECCSSSCGGGGTTEEEEEESCCG-GGGT
T ss_pred EEEECCCceEEEEEEEEeCCCCccccccCeEEEEecCCc-cCCc
Confidence 899999999999999996521 12344455666666 3334
No 32
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae}
Probab=95.84 E-value=0.012 Score=49.16 Aligned_cols=71 Identities=15% Similarity=0.045 Sum_probs=49.7
Q ss_pred CCCc-chhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCC
Q psy6778 37 CIPD-FVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASP 115 (314)
Q Consensus 37 C~P~-~~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~ 115 (314)
.-|. ..|||+|++..+||+-.. .++..++|++. .|-|.|..-.. ....
T Consensus 7 ~~p~~~~NlAlgk~a~~SS~~~~------------------------~~a~~AvDG~~---~t~w~~~sct~----T~~~ 55 (148)
T 2j22_A 7 RTPKKLSNIALTKETRQSSTDYN------------------------GFSRLAVDGNK---NGDYGHHSVTH----TKED 55 (148)
T ss_dssp -----CEETTTTCEEEESCCCTT------------------------CCGGGGGSSCC---CCCGGGTCCCC----CCSC
T ss_pred CCCCCCccccCCCceeECCCCCC------------------------CccCccEeCCC---CCcccccceec----cCCC
Confidence 3344 679999999999987542 35778999984 56787743210 0113
Q ss_pred CceeeEeecCceeEEEEEEeeec
Q psy6778 116 DNVTLTLSLGKKFELTYISLSFC 138 (314)
Q Consensus 116 ~~vtitl~l~~~f~~~~v~l~f~ 138 (314)
.+--++|||++.|.|..|.|...
T Consensus 56 ~~~Ww~VDLg~~~~V~~V~i~~r 78 (148)
T 2j22_A 56 SPSWWEIDLAQTEELEKLIIYNR 78 (148)
T ss_dssp TTCEEEEEEEEEEEEEEEEEEEC
T ss_pred CCCEEEEECCCCEEeeEEEEEec
Confidence 45678999999999999999865
No 33
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=95.83 E-value=0.012 Score=54.19 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=62.1
Q ss_pred CcchhhccCCceeecCccCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCCCce
Q psy6778 39 PDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNV 118 (314)
Q Consensus 39 P~~~nla~g~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~v 118 (314)
|.-.|||+|+++.+||+=+ .+++++++|++ ..|.|.+..-. . .....+-
T Consensus 149 ~~~~nlA~~k~~taSS~~~------------------------~~~a~~AvDG~---~~t~W~~~~c~--~--t~~~~~~ 197 (293)
T 3cqo_A 149 PTGENLALKGKATQSSLFE------------------------SGIAYNAIDGN---QANNWEMASCT--H--TKNTMDP 197 (293)
T ss_dssp CCSSCGGGGSEEEESCCCT------------------------TCCGGGGGSSC---CCCSGGGTCCC--C--CCSEESC
T ss_pred CCCccccCCcceecCCCCC------------------------CCCccccccCC---CCCccccCccc--c--CCCCCCC
Confidence 3456888888888886643 25778899987 46889874321 0 0011346
Q ss_pred eeEeecCceeEEEEEEeeeccC--CCCCCceEEEee--cCC--CCCccc
Q psy6778 119 TLTLSLGKKFELTYISLSFCPK--SIKPDSLAIYKS--QDF--GKSWQP 161 (314)
Q Consensus 119 titl~l~~~f~~~~v~l~f~~~--s~rP~~~~iekS--~D~--g~tw~p 161 (314)
-|+|||++.+.|..|.|++. + ..|-....|+-| .|. +.+|..
T Consensus 198 W~~VDLg~~~~v~~V~i~~~-d~~~~~~~~~~i~vs~s~~~~~~~n~~~ 245 (293)
T 3cqo_A 198 WWRMDLSQTHRVFSVKVTNR-DSFEKRINGAEIRIGDSLDNNGNHNPRC 245 (293)
T ss_dssp EEEEEEEEEEEEEEEEEECC-SSSGGGGTTEEEEEESCCGGGGTTSCEE
T ss_pred EEEEECCCeEEEeEEEEEcc-CccccccCCeEEEEeccCccccccCcee
Confidence 79999999999999999976 3 345667778775 443 567764
No 34
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=95.82 E-value=0.011 Score=58.92 Aligned_cols=83 Identities=20% Similarity=0.180 Sum_probs=63.7
Q ss_pred hhhccC-CceeecCccCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCCCceee
Q psy6778 42 VNAAFG-QEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTL 120 (314)
Q Consensus 42 ~nla~g-~~v~assTCG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vti 120 (314)
.|||.+ ++|+|||+= +.+++++|++ ..|+|.++.. .....|
T Consensus 352 ~nla~~~~~vtaSs~~--------------------------~~~~~a~Dgn---~~TyW~a~~~---------~~~~~l 393 (478)
T 3ues_A 352 EALASVRCEARTSSAS--------------------------AAAAHLVDGN---RDTFWRPDAD---------DAAPAI 393 (478)
T ss_dssp HHHHTCCCEEEESSCG--------------------------GGGGGGSSSC---TTCCBCCCTT---------CSSCEE
T ss_pred ccccccccceEeeccc--------------------------cChhhcccCC---CCceEeCCCC---------CCCeeE
Confidence 367778 788887531 5678899987 5899999765 235689
Q ss_pred EeecCceeEEEEEEeeecc-CCCCCCceEEEeecCCCCCcccce
Q psy6778 121 TLSLGKKFELTYISLSFCP-KSIKPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 121 tl~l~~~f~~~~v~l~f~~-~s~rP~~~~iekS~D~g~tw~p~~ 163 (314)
+|||+++..|..|.|+..+ ..-|=.+..||-|.| |.+|++.-
T Consensus 394 ~idLg~~~~~n~v~IqE~i~~gqRV~~y~Ve~~~d-gg~W~~va 436 (478)
T 3ues_A 394 TLTLPQPTTINAIVIEEAIEHGQRIEHLRVTGALP-DGTERVLG 436 (478)
T ss_dssp EEEEEEEEEEEEEEEEECGGGCCCEEEEEEEEECT-TSCEEEEE
T ss_pred EEECCCCcEEEEEEEeecccCCCceEEEEEEEEeC-CCCEEEEE
Confidence 9999999999999998552 245778899999887 67898643
No 35
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}
Probab=95.23 E-value=0.031 Score=44.78 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=51.0
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC--CCCCCceEEEeecCCCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKS 158 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~--s~rP~~~~iekS~D~g~t 158 (314)
.+|+..+.|++. .|+|.+.... .......|+|||+++..|+.|.++...+ ..++....|+-|.| |.+
T Consensus 26 ~~~~~~~~Dg~~---~t~w~~~w~~------~~~~~~~l~vDLg~~~~i~~v~~~~~~~~~~~~~~~~~i~~S~D-g~~ 94 (143)
T 2v72_A 26 QDPASSAIDGNI---NTMWHTKWNG------SDALPQSLSVNLGKARKVSSIAITPRTSGNNGFITKYEIHAINN-GVE 94 (143)
T ss_dssp TBCGGGGSSSCT---TCCEECCTTS------CSCSCEEEEEEEEEEEEEEEEEEECCSSCCTTCEEEEEEEEEET-TEE
T ss_pred CChHHhccCCCC---CCceecCCCC------CCCCCEEEEEECCCCeEEeEEEEEecccCCCCCEEEEEEEEEcC-CCc
Confidence 478889999873 5889876531 1125688999999999999999998632 34677899999988 554
No 36
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.14 E-value=0.032 Score=56.39 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=55.3
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC---CCCCCceEEEeecCCCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKS 158 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~---s~rP~~~~iekS~D~g~t 158 (314)
.+++++++|++ ..|+|.|.... . ........|+|||+++..|..|.++...+ ..++...-|+-|.| |++
T Consensus 41 ~~~~~~~~Dg~---~~T~W~s~~~~---~-~~~~~~~~l~vDLg~~~~i~~v~~~~~~~~~~~~~~~~y~i~~S~D-g~~ 112 (656)
T 1k3i_A 41 GNECNKAIDGN---KDTFWHTFYGA---N-GDPKPPHTYTIDMKTTQNVNGLSMLPRQDGNQNGWIGRHEVYLSSD-GTN 112 (656)
T ss_dssp TSCGGGGSSSC---TTCCEECCCGG---G-CCCCSCEEEEEEEEEEEEEEEEEEECCCSSCCTTCBCEEEEEEESS-SSC
T ss_pred CCcHHhcCCCC---CCCEEEeCCCC---C-CCCCCCceEEecCCCcEEEEEEEEEecccCCCCCCeeEEEEEEECC-CCC
Confidence 57889999987 46889887541 0 00124578999999999999999987632 23788999999998 889
Q ss_pred c-ccc
Q psy6778 159 W-QPL 162 (314)
Q Consensus 159 w-~p~ 162 (314)
| +..
T Consensus 113 w~~~v 117 (656)
T 1k3i_A 113 WGSPV 117 (656)
T ss_dssp CCSCS
T ss_pred cceee
Confidence 9 654
No 37
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=94.97 E-value=0.04 Score=55.08 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=55.8
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC--CCCCCceEEEeecCCCCCc
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSW 159 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~--s~rP~~~~iekS~D~g~tw 159 (314)
.+++++++|++. .|+|.|.... . ........|+|||++++.|..|.|+...+ ..++..+-|+-|.| |.+|
T Consensus 477 ~~~~~~a~DG~~---~T~w~s~~~~---~-~~~~~~~~i~vDLg~~~~i~~v~~~~r~~~~~~~~~~y~i~~S~D-g~~w 548 (601)
T 1w8o_A 477 DGRASNVIDGNP---STFWHTEWSR---A-DAPGYPHRISLDLGGTHTISGLQYTRRQNSANEQVADYEIYTSLN-GTTW 548 (601)
T ss_dssp CCCGGGGGSSCT---TCCEECCCSS---T-TCCCSCEEEEEEEEEEEEEEEEEEEECSSCSTTCBCEEEEEEESS-SSSC
T ss_pred CCccceeeCCCC---CCcEecCCCC---C-CCCCCCeEEEEECCCcEEEeEEEEecCCCCCCCceEEEEEEEECC-CCcc
Confidence 588999999873 5899887531 0 00123578999999999999999986421 34889999999988 8999
Q ss_pred c-cce
Q psy6778 160 Q-PLQ 163 (314)
Q Consensus 160 ~-p~~ 163 (314)
+ |+.
T Consensus 549 ~~~v~ 553 (601)
T 1w8o_A 549 DGPVA 553 (601)
T ss_dssp EEEEE
T ss_pred ceeee
Confidence 8 443
No 38
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=94.57 E-value=0.042 Score=57.33 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=55.5
Q ss_pred CCCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC--CCCCCceEEEeecCCCCC
Q psy6778 81 GRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKS 158 (314)
Q Consensus 81 ~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~--s~rP~~~~iekS~D~g~t 158 (314)
..+|+++++|++ ..|+|.|.... ........|+|||++.+.|+.|.++...+ ..++...-|+-|.| |.+
T Consensus 611 ~~~~a~~aiDGn---~~T~W~S~w~~-----~~~~~p~wl~VDLg~~~~V~~V~i~~r~~~~~g~v~~y~I~~S~D-G~~ 681 (737)
T 2v5d_A 611 ENAPASFASDGD---MNTFWHSKWSS-----PAHEGPHHLTLELDNVYEINKVKYAPRQDSKNGRITGYKVSVSLD-GEN 681 (737)
T ss_dssp SSBCGGGGGSSC---SSCCEECCCSS-----SCCCCCCEEEEEEEEEEEEEEEEEECCSSCCTTEEEEEEEEEESS-SSC
T ss_pred CCCCHHHccCCC---CCCceeccccC-----CCCCCCeEEEEECCCcEEEEEEEEEeccCCCCCceEEEEEEEEcC-CCc
Confidence 357899999987 47899886421 01124578999999999999999986521 23557889999988 899
Q ss_pred cccce
Q psy6778 159 WQPLQ 163 (314)
Q Consensus 159 w~p~~ 163 (314)
|+++.
T Consensus 682 W~~v~ 686 (737)
T 2v5d_A 682 FTEVK 686 (737)
T ss_dssp CCCSE
T ss_pred eEEEE
Confidence 99764
No 39
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=94.39 E-value=0.03 Score=58.05 Aligned_cols=55 Identities=27% Similarity=0.733 Sum_probs=31.8
Q ss_pred eeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccC-CcccCCCCCCCcccCCCCccccCCCCCCCCCCCCCC
Q psy6778 219 LVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKG-GRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKC 293 (314)
Q Consensus 219 ~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~-~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~G~~Ce~C 293 (314)
++|.|..+++|.+|+ |.... ..|.. ....|.+++ .|. .|+| .|..++.|++|+.|
T Consensus 538 g~C~C~~G~~G~~Ce-c~~~~-------------~~C~~~~g~~Cs~~G-~C~----~g~C-~C~~Gy~G~~Ce~c 593 (687)
T 3k6s_B 538 GKCRCHPGFEGSACQ-CERTT-------------EGCLNPRRVECSGRG-RCR----CNVC-ECHSGYQLPLCQEC 593 (687)
T ss_dssp TEEEECTTCCSTTSC-SCCSS-------------CTTBCTTCSBTSSSC-CBC----SSCB-CCSTTCCTTTTCCC
T ss_pred CEEEcCCCCcCCCCc-cCCCC-------------CCCCCCCCCCCCCCC-cCC----CCEE-ECCCCCcCCCCCCC
Confidence 368899999999998 43211 12330 012344443 443 2566 57777777777764
No 40
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=94.38 E-value=0.049 Score=51.26 Aligned_cols=15 Identities=33% Similarity=0.864 Sum_probs=9.1
Q ss_pred eeeCCCCCCCCCCcc
Q psy6778 220 VCECRHNTAGKDCEK 234 (314)
Q Consensus 220 ~C~C~~nT~G~~Ce~ 234 (314)
.|.|+.+++|.+|+.
T Consensus 198 ~C~C~~G~~G~~C~~ 212 (324)
T 2ygq_A 198 FCICPPGFYGVNCDK 212 (324)
T ss_dssp CEECCTTCBTTTTCB
T ss_pred EEeCCCCccCCCccc
Confidence 566666666666653
No 41
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A
Probab=94.17 E-value=0.05 Score=45.54 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=48.3
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCC---CCCCceEEEeecCCCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKS---IKPDSLAIYKSQDFGKS 158 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s---~rP~~~~iekS~D~g~t 158 (314)
.|++.+..+... ...+.|.+... ..+--|+|||++...|+-|.++..... ....+..|+-|.| |.+
T Consensus 32 ~~~p~~arL~~~-~~~~~W~~~~~---------~~~qwlqVDLg~~~~vt~v~tqg~~~~~~~~~v~~y~i~~S~D-g~~ 100 (158)
T 3bn6_A 32 SWFPYYARLDNQ-GKFNAWTAQTN---------SASEWLQIDLGSQKRVTGIITQGARDFGHIQYVAAYRVAYGDD-GVT 100 (158)
T ss_dssp BCCGGGCBTTCC-SSSCSEECSSC---------CTTCCEEEEEEEEEEEEEEEEECEEETTEEEEEEEEEEEEESS-SSS
T ss_pred ccChhheEEcCC-CCCCcccCCCC---------CCCCEEEEeCCCceEEEEEEeeCCCCCCCCceEEEEEEEEECC-CCc
Confidence 456666553221 23577877654 224579999999999999999865211 1345667888888 899
Q ss_pred ccccee
Q psy6778 159 WQPLQF 164 (314)
Q Consensus 159 w~p~~y 164 (314)
|++|.-
T Consensus 101 W~~~~~ 106 (158)
T 3bn6_A 101 WTEYKD 106 (158)
T ss_dssp CEECCC
T ss_pred eEEEEc
Confidence 987653
No 42
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Probab=93.58 E-value=0.13 Score=44.66 Aligned_cols=48 Identities=27% Similarity=0.286 Sum_probs=38.3
Q ss_pred ceeeEeecCceeEEEEE-EeeeccC---CCCCCceEEEeecCCCCCcccceee
Q psy6778 117 NVTLTLSLGKKFELTYI-SLSFCPK---SIKPDSLAIYKSQDFGKSWQPLQFY 165 (314)
Q Consensus 117 ~vtitl~l~~~f~~~~v-~l~f~~~---s~rP~~~~iekS~D~g~tw~p~~yy 165 (314)
.--|+|||++...|+-| +++..+. .....+..|+-|.| |.+|++|.-.
T Consensus 65 ~qwLQVDLg~~~~VtgV~~tQG~~~~~~~~~vt~Y~l~yS~D-G~~W~~~~~~ 116 (192)
T 2w1s_A 65 GEFIGLDLGKEIKLDGIRFVIGKNGGGSSDKWNKFKLEYSLD-NESWTTIKEY 116 (192)
T ss_dssp TCEEEEEEEEEEEEEEEEEEECCSSTTTTCCCSEEEEEEESS-SSSCEEEEEE
T ss_pred CceEEEECCCeEEEEEEEEEcCCCCCCCCCeEEEEEEEEEcC-CCCeEEEecC
Confidence 46799999999999999 7776532 24567889999998 8999987654
No 43
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=92.49 E-value=0.05 Score=56.67 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=30.0
Q ss_pred CCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCCCcccce
Q psy6778 84 PAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 84 p~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~tw~p~~ 163 (314)
++++++|++ ..|||.|.... .....-.|+|||+++..|.-|.+.+..++. ...-.||-|.| |++|++..
T Consensus 604 ~~~~a~Dgd---~~T~w~s~~~~------~~~~g~wi~VdL~~~~~V~~I~i~~~~~~~-~~~~~ve~S~D-Gk~W~~v~ 672 (716)
T 2cho_A 604 NLPLQVKAN---RVLISPANEVV------KWAAGNSVEIELDAIYPGENIQINFGKDAP-CTWGRLEISTD-AKEWKTVD 672 (716)
T ss_dssp CCCEEEETT---EEEECC------------------CEEEEEEEEEEEEEEECC--------------------------
T ss_pred CchheeCCC---cceEEECCCCc------cCCCCCEEEEEcCCcEEEEEEEEecCCCCC-CceEEEEEECC-CCCccCCC
Confidence 678999988 47999998531 012235789999999999999999884432 22478999999 89999884
No 44
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=92.06 E-value=0.028 Score=58.36 Aligned_cols=58 Identities=26% Similarity=0.642 Sum_probs=37.7
Q ss_pred eeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCccc----CCCCCCCcccCCCCccccCCC------CCCCCC
Q psy6778 219 LVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCK----CNGHASRCIKSPQGALVCECR------HNTAGK 288 (314)
Q Consensus 219 ~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~----Cn~h~~~C~~~~~~G~C~~C~------~nt~G~ 288 (314)
++|.|..++.|.+|| |..++++.+- ....|. +.+ |.+++ .|. .|+| .|. .++.|.
T Consensus 446 g~C~C~~Gy~G~~Ce-c~~~~~~~~~------~~~~C~--~~~~~~~Cs~~G-~C~----~G~C-~C~~~~~~~~G~~G~ 510 (687)
T 3k6s_B 446 GICRCDTGYIGKNCE-CQTQGRSSQE------LEGSCR--KDNNSIICSGLG-DCV----CGQC-LCHTSDVPGKLIYGQ 510 (687)
T ss_dssp SSEEECSSEESTTSC-EESSSCCCSG------GGSTTS--SSTTSCGGGSSE-EEE----TTEE-EECCCCSTTCCEEST
T ss_pred CEeEcCCCCcCCccc-ccCCcCCccc------cCCCCC--CCCCCCcCCCCC-EEe----CCEE-EcCCCCCCCCCcccc
Confidence 478999999999999 7777664321 122465 432 55443 444 3577 577 777787
Q ss_pred CCC
Q psy6778 289 DCE 291 (314)
Q Consensus 289 ~Ce 291 (314)
+|+
T Consensus 511 ~Ce 513 (687)
T 3k6s_B 511 YCE 513 (687)
T ss_dssp TSC
T ss_pred ccc
Confidence 776
No 45
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Probab=91.97 E-value=0.17 Score=42.40 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=40.9
Q ss_pred ceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC---CCCCCceEEEeecCCCCCcccce
Q psy6778 97 VTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 97 ~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~---s~rP~~~~iekS~D~g~tw~p~~ 163 (314)
.+.|.+... ..+--|+|||++...|+-|.++.... .....+..|+-|.| |.+|++|.
T Consensus 45 ~~~W~a~~~---------~~~qwLqVDLg~~~~Vt~v~tqG~~~~~~~~~v~~y~l~yS~D-g~~W~~~~ 104 (160)
T 1czt_A 45 VNAWQAKAN---------NNKQWLEIDLLKIKKITAIITQGCKSLSSEMYVKSYTIHYSEQ-GVEWKPYR 104 (160)
T ss_dssp SCSEECSSC---------STTCCEEEEEEEEEEEEEEEEECEEETTEEEEEEEEEEEEESS-SSSCEECC
T ss_pred CCcccCCCC---------CCCcEEEEeCCCcEEEEEEEEeCcCCCCcccEEEEEEEEEECC-CCcEEEEE
Confidence 457866543 23457999999999999999997511 12334577888888 89998764
No 46
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=91.96 E-value=0.53 Score=43.65 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC---CCCCCceEEEeecCCCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKS 158 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~---s~rP~~~~iekS~D~g~t 158 (314)
.|.+.+..|.+ ..+.|.+.+.. ....+--|+|||++...|+-|.++..+. .....+..|+-|.| |.+
T Consensus 188 ~~~p~~arl~~---~~~~W~~~~a~------~~~~~qwLqVDLg~~~~Vt~V~tqg~~~~~~~~~v~~Y~l~~S~d-g~~ 257 (318)
T 2qqi_A 188 NWMPENIRLVT---SRSGWALPPAP------HSYINEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNN-GSD 257 (318)
T ss_dssp TCCGGGGBTTC---CCCSCSBCCCT------TCCSCCCEEEEEEEEEEEEEEEEEECCCTTCCCCCCCEEEEEESS-SSS
T ss_pred ccCchhhhhcc---cCCceeCcccc------cCCcCcEEEEeCCCceEEEEEEEcCccCCCCCeEEEEEEEEEECC-CCC
Confidence 46666666644 24668654220 0123467999999999999999997632 23556788999988 899
Q ss_pred cccce
Q psy6778 159 WQPLQ 163 (314)
Q Consensus 159 w~p~~ 163 (314)
|++|.
T Consensus 258 W~~~~ 262 (318)
T 2qqi_A 258 WKMIM 262 (318)
T ss_dssp CEECB
T ss_pred EEEEE
Confidence 98754
No 47
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=91.62 E-value=0.08 Score=49.78 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCC
Q psy6778 275 GALVCECRHNTAGKDCEKCKPFFSDR 300 (314)
Q Consensus 275 ~G~C~~C~~nt~G~~Ce~C~~Gyy~~ 300 (314)
.++| .|..++.|.+|++..+..+..
T Consensus 292 ~~~C-~C~~G~~G~~C~~~~~~~~~~ 316 (324)
T 2ygq_A 292 PNKC-QCQEGWHGRHCNKRYEASLIG 316 (324)
T ss_dssp --------------------------
T ss_pred CCEe-ECCCCCcCCCCCCCCcccccc
Confidence 5678 699999999999987766554
No 48
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=91.15 E-value=0.22 Score=46.29 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=47.8
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCC-----CCCCceEEEeecCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKS-----IKPDSLAIYKSQDFG 156 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s-----~rP~~~~iekS~D~g 156 (314)
.|.+.+..+.+ ..+.|.+... ...--|+|||++...|+-|.++....+ ..-.+..|+-|.| |
T Consensus 33 ~~~p~~arl~~---~~~~W~~~~~---------~~~qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~d-g 99 (325)
T 2qqj_A 33 RWTPQQSRLHG---DDNGWTPNLD---------SNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTN-G 99 (325)
T ss_dssp SSCGGGCBTTC---SSCCBCCSSC---------STTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-S
T ss_pred ccCccceeecC---CCCccccCcC---------CcCccEEEeccceEEEEEEEeeCCcCCCCCcceeEEEEEEEEEcC-C
Confidence 36676666644 2467866543 224569999999999999999976211 1234567888888 8
Q ss_pred CCcccce
Q psy6778 157 KSWQPLQ 163 (314)
Q Consensus 157 ~tw~p~~ 163 (314)
.+|.+|.
T Consensus 100 ~~W~~~~ 106 (325)
T 2qqj_A 100 EDWMVYR 106 (325)
T ss_dssp SSCEECE
T ss_pred cEeEEee
Confidence 9998765
No 49
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=90.87 E-value=0.17 Score=52.55 Aligned_cols=27 Identities=37% Similarity=0.906 Sum_probs=23.0
Q ss_pred CCCCCCCCCCccCCCCceeeeCCCCCCCCCCcc
Q psy6778 202 CKCNGHASRCIKSPQGELVCECRHNTAGKDCEK 234 (314)
Q Consensus 202 C~CnGHa~~C~~~~~g~~~C~C~~nT~G~~Ce~ 234 (314)
..|.|| .+|+ . ++|.|..++.|..|+.
T Consensus 539 ~~C~gh-G~C~---~--G~C~Cd~G~~G~~C~~ 565 (725)
T 2e26_A 539 DMCSGH-GRCV---Q--GSCVCDEQWGGLYCDE 565 (725)
T ss_dssp GGGGGS-EEEE---T--TEEEECTTEESTTSCE
T ss_pred cccCCC-cEEC---C--CCEeeCCCccCCCcCc
Confidence 389999 8897 2 4999999999999984
No 50
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=90.37 E-value=0.23 Score=42.85 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=48.0
Q ss_pred CCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeecc---CCCCCCceEEEeecCCCCCc
Q psy6778 83 FPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCP---KSIKPDSLAIYKSQDFGKSW 159 (314)
Q Consensus 83 hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~---~s~rP~~~~iekS~D~g~tw 159 (314)
+.+..|.|++ ..|+|||... .+ =.|+|.+.+...+..|.|.+.+ +|..|..+.|.--.+ ...|
T Consensus 39 ~gv~~L~D~~---~~TyWqSdg~--------qp--H~I~i~f~k~v~i~~l~i~vd~~~DeSYtPs~I~v~aG~~-~~dL 104 (171)
T 1jhj_A 39 FGVDQLRDDN---LETYWQSDGS--------QP--HLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNN-FHNL 104 (171)
T ss_dssp BSTHHHHSSC---TTCCEECCSS--------SS--EEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESS-TTSC
T ss_pred CChHHcCCCC---CCeeEccCCC--------CC--eEEEEEECCCceEEEEEEEECCCCCCCCCcEEEEEEEeCC-cccc
Confidence 4578899976 5799999864 13 4666777888889887777653 588998888865544 4555
Q ss_pred cccee
Q psy6778 160 QPLQF 164 (314)
Q Consensus 160 ~p~~y 164 (314)
+.+..
T Consensus 105 ~ei~~ 109 (171)
T 1jhj_A 105 QEIRQ 109 (171)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 54443
No 51
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=90.17 E-value=0.31 Score=45.26 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=47.7
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCC-----CCCCceEEEeecCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKS-----IKPDSLAIYKSQDFG 156 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s-----~rP~~~~iekS~D~g 156 (314)
.|++.++.|.+ ..+.|.+... ...--|+|||++...|+-|.++..... ..-.+..|+-|.| |
T Consensus 32 ~~~p~~arl~~---~~~~W~~~~~---------~~~qwlqVDLg~~~~v~~v~tqg~~~~~~~~~~~v~~y~i~~S~D-g 98 (318)
T 2qqi_A 32 NWSAERSRLNY---PENGWTPGED---------SYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSN-G 98 (318)
T ss_dssp GGCGGGGBTTC---SSCCBCCSSC---------CTTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-S
T ss_pred cCChhhhhhcC---CCCeEcCCCC---------CCCceEEEccCCcEEEEeeeeeccccCCCCccEeEEEEEEEEecC-C
Confidence 35666666644 2467877553 234569999999999999999976221 1234567888888 8
Q ss_pred CCcccce
Q psy6778 157 KSWQPLQ 163 (314)
Q Consensus 157 ~tw~p~~ 163 (314)
.+|.+|.
T Consensus 99 ~~W~~~~ 105 (318)
T 2qqi_A 99 EDWITIK 105 (318)
T ss_dssp SSCEECE
T ss_pred CeEEEEe
Confidence 9999764
No 52
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=90.06 E-value=0.053 Score=45.97 Aligned_cols=19 Identities=37% Similarity=0.845 Sum_probs=15.7
Q ss_pred eeeeCCCCCCCCCCccCCC
Q psy6778 219 LVCECRHNTAGKDCEKCKP 237 (314)
Q Consensus 219 ~~C~C~~nT~G~~Ce~C~p 237 (314)
++|.|+.+++|..|+.|..
T Consensus 83 ~~C~C~~G~~G~~C~~C~~ 101 (169)
T 2vj2_A 83 GDCRCQYGWQGLYCDKCIP 101 (169)
T ss_dssp TCCEECTTEESSSSCEECC
T ss_pred CeeECCCCCCCCCcccCCC
Confidence 4788999999999988754
No 53
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=90.05 E-value=0.28 Score=39.60 Aligned_cols=58 Identities=24% Similarity=0.575 Sum_probs=35.7
Q ss_pred CceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCCCcccCCCCccccCCCCCCCCCCCCCCC
Q psy6778 217 GELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCK 294 (314)
Q Consensus 217 g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~G~~Ce~C~ 294 (314)
+...|.|+.+++|.+|+. ..++|...+ |. +...|.-..++-.| .|..+++|++|+.=.
T Consensus 78 ~~~~C~C~~G~~G~~C~~----------------~i~~C~~~~--C~-~~~~C~~~~g~~~C-~C~~G~~G~~c~~~~ 135 (143)
T 4d90_A 78 IGYVCKCPRGFNGIHCQH----------------NINECEVEP--CK-NGGICTDLVANYSC-ECPGEFMGRNCQYKG 135 (143)
T ss_dssp CCEEEECCTTEESTTSCE----------------ECCTTTTCC--SC-TTCEEEEETTEEEE-ECCTTCBSTTSCBC-
T ss_pred CCeEeECcCCCcCCCccc----------------CCCcCCCCC--CC-CCCEeECCCCCeEe-ECCCCCccCCceecC
Confidence 346889999998988862 123454223 32 22356432334578 699999999888643
No 54
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=89.85 E-value=0.18 Score=52.32 Aligned_cols=66 Identities=23% Similarity=0.488 Sum_probs=36.8
Q ss_pred eeeeCCCCCCCCCCc------cCCCCCCCCCCCCCcccCCCCccCCcccC-C-CC-CCCccc-------CCCCccccCCC
Q psy6778 219 LVCECRHNTAGKDCE------KCKPFFSDRPWGRATVYDANECKGGRCKC-N-GH-ASRCIK-------SPQGALVCECR 282 (314)
Q Consensus 219 ~~C~C~~nT~G~~Ce------~C~pgy~~~p~~~~t~~~~~~C~~~~C~C-n-~h-~~~C~~-------~~~~G~C~~C~ 282 (314)
+.|.|..+++|..|+ .|... .+.+ -...+.|..+.|.| . |. +..|.. ....|.|.+|+
T Consensus 545 g~C~C~~Gy~G~~CeC~~~~~~C~~~-~g~~-----C~~~G~C~~g~C~C~~~Gy~G~~Ce~C~~C~~~C~~~g~Cv~C~ 618 (690)
T 3fcs_B 545 GDCLCDSDWTGYYCNCTTRTDTCMSS-NGLL-----CSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECK 618 (690)
T ss_dssp TEEEECTTEESSSSCEECCCTTTBCT-TSSB-----TSSSCEEETTEEECCSTTCBSTTSCBCTTSCCTTTSCCGGGTTT
T ss_pred CeeECcCCCcCCCCccCCCCCcccCC-CCCC-----CCCCCEEeCCEEECCCCCccCCCcCcCCCCCCCCCCCCCcccCC
Confidence 468899999999998 33321 0000 01223344345666 2 22 333432 03567888888
Q ss_pred CCCCCCCC
Q psy6778 283 HNTAGKDC 290 (314)
Q Consensus 283 ~nt~G~~C 290 (314)
.+++|..|
T Consensus 619 ~g~tG~~C 626 (690)
T 3fcs_B 619 KFDRGALH 626 (690)
T ss_dssp TTCCSSSS
T ss_pred CCCccCCC
Confidence 88888843
No 55
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A
Probab=89.42 E-value=0.41 Score=42.58 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=46.1
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCCC-----CCCceEEEeecCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSI-----KPDSLAIYKSQDFG 156 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s~-----rP~~~~iekS~D~g 156 (314)
.|.+.+.-+.+ ..+.|.+... ...--|+|||++...|+-|+++-...+. .-.+..|+-|.| |
T Consensus 31 ~~~P~~ARLn~---~~~aW~a~~~---------d~~qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~~VtsY~l~yS~D-G 97 (218)
T 4deq_A 31 NWSAERSRLNY---PENGWTPGED---------SYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSN-G 97 (218)
T ss_dssp GGCGGGCBTTC---SSCCBCCSSC---------STTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-S
T ss_pred CCChhHeEEcC---CCCeECCCCC---------CCCCeEEEeCCCcEEEEEEEEEeccCCCCCccceEEEEEEEEEeC-C
Confidence 35555555533 2367877553 2356789999999999999998652111 123455777877 8
Q ss_pred CCccccee
Q psy6778 157 KSWQPLQF 164 (314)
Q Consensus 157 ~tw~p~~y 164 (314)
.+|..|.-
T Consensus 98 ~~W~~y~~ 105 (218)
T 4deq_A 98 EDWITIKE 105 (218)
T ss_dssp SSCEECEE
T ss_pred CceEEeec
Confidence 99997653
No 56
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A
Probab=87.91 E-value=0.63 Score=39.84 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=36.9
Q ss_pred ceeeEeecCceeEEEEEEeeeccC----CCCCCceEEEeecCCCCCcccce
Q psy6778 117 NVTLTLSLGKKFELTYISLSFCPK----SIKPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 117 ~vtitl~l~~~f~~~~v~l~f~~~----s~rP~~~~iekS~D~g~tw~p~~ 163 (314)
+--|+|||++...|+-|.++.... .....+..|+-|.| |.+|++|.
T Consensus 72 ~qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~vt~Y~l~yS~D-g~~W~~y~ 121 (178)
T 2wuh_A 72 KEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRD-GTRWISWR 121 (178)
T ss_dssp CCCEEEEEEEEEEEEEEEEECCCGGGTCCCCCSEEEEEEESS-SSSCEECC
T ss_pred CCEEEEecCCceEEeEEEEecccCCCCccceeEEEEEEEEcC-CCcEEEEe
Confidence 456999999999999999997621 23456788999999 79999765
No 57
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=87.69 E-value=0.41 Score=46.28 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=27.1
Q ss_pred eeeEeecCceeEEEEEEeeeccCCCCC-CceEEEeecCCCCCcccceee
Q psy6778 118 VTLTLSLGKKFELTYISLSFCPKSIKP-DSLAIYKSQDFGKSWQPLQFY 165 (314)
Q Consensus 118 vtitl~l~~~f~~~~v~l~f~~~s~rP-~~~~iekS~D~g~tw~p~~yy 165 (314)
+|..|++..-+-|.+-+..=+-....| +.+.||.|.|.|.+|...+..
T Consensus 71 ~T~~l~v~~g~~lQF~l~~GC~~~~s~~~~V~LeYStd~G~sW~~v~~~ 119 (387)
T 2ddu_A 71 VTRDLTLKPGYVLQFKLNIGCTSQFSSTAPVLLQYSHDAGMSWFLVKEG 119 (387)
T ss_dssp ----CCCCTTCEEEEEEBSSSCSSCCSSCCEEEEEESSTTSCCEESCCC
T ss_pred EeeeEecCCCcEEEEEEEccCCCCCCCCCcEEEEEEeCCCcceEeeecc
Confidence 566666766665554222222011112 578999999999999977643
No 58
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=87.12 E-value=0.5 Score=38.07 Aligned_cols=75 Identities=23% Similarity=0.528 Sum_probs=40.9
Q ss_pred CCCccCC-CCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCCCcccC-------CCCccccC
Q psy6778 209 SRCIKSP-QGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKS-------PQGALVCE 280 (314)
Q Consensus 209 ~~C~~~~-~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~~C~~~-------~~~G~C~~ 280 (314)
..|.... .+...|.|+.+++|.+|+....--.+. ......+.|. +=.|.. ...|... ..+.+| .
T Consensus 12 g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~----~~c~~~~~C~--~~~C~~-~g~C~~~~~~~~~~~~~~~C-~ 83 (143)
T 4d90_A 12 GICLPGLADGSFSCECPDGFTDPNCSSVVEVASDE----EEPTSAGPCT--PNPCHN-GGTCEISEAYRGDTFIGYVC-K 83 (143)
T ss_dssp CEEEC-----CCEEECCTTCCTTTTCSCCCCTTTT----TSCCCCCTTS--SCCCCT-TCEEEECCCEETTEECCEEE-E
T ss_pred CEeeCCCCCCCEEeECCCCCCCCCCccCccccccc----cccccCCcCC--CCCCCC-CCEecCCCccccCCCCCeEe-E
Confidence 4666421 134689999999999998743321110 0011334565 323432 2345421 134578 6
Q ss_pred CCCCCCCCCCC
Q psy6778 281 CRHNTAGKDCE 291 (314)
Q Consensus 281 C~~nt~G~~Ce 291 (314)
|..++.|.+|+
T Consensus 84 C~~G~~G~~C~ 94 (143)
T 4d90_A 84 CPRGFNGIHCQ 94 (143)
T ss_dssp CCTTEESTTSC
T ss_pred CcCCCcCCCcc
Confidence 88888888886
No 59
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=87.12 E-value=1.3 Score=42.78 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=47.5
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCC---CCCCceEEEeecCCCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKS---IKPDSLAIYKSQDFGKS 158 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s---~rP~~~~iekS~D~g~t 158 (314)
.|.+.+..|.+ ..+.|.+.+.. ....+--|+|||++...|+-|+++..+.. ..-.+..|+-|.| |.+
T Consensus 320 ~~~p~~arl~~---~~~~W~~~~~~------~~~~~qwLqVDLg~~~~vt~v~tqg~~~~~~~~~v~~Y~i~~S~d-g~~ 389 (450)
T 2qqm_A 320 NWMPENIRLVT---SRSGWALPPAP------HSYINEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNN-GSD 389 (450)
T ss_dssp TCCGGGGBTTT---CSSCEEECCCS------SCCCSCCEEEEEEEEEEEEEEEEECCSCTTTCCCEEEEEEEEESS-SSS
T ss_pred ccCchhhhccc---cCCcccccccc------cCCcCceEEEeCCCcEEEEEEEecCccCCCCcEEEEEEEEEEECC-CCc
Confidence 45666666644 24667654220 01234579999999999999999976211 2334577888888 899
Q ss_pred cccce
Q psy6778 159 WQPLQ 163 (314)
Q Consensus 159 w~p~~ 163 (314)
|++|.
T Consensus 390 W~~~~ 394 (450)
T 2qqm_A 390 WKMIM 394 (450)
T ss_dssp CEECB
T ss_pred EEEEE
Confidence 98764
No 60
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=86.18 E-value=0.14 Score=56.33 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCc-eeeEeecCceeEEEEEEeeeccC----CCCCCceEEEeecCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDN-VTLTLSLGKKFELTYISLSFCPK----SIKPDSLAIYKSQDFG 156 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~-vtitl~l~~~f~~~~v~l~f~~~----s~rP~~~~iekS~D~g 156 (314)
.+++++++|++ ..|+|.|.... ...+.. ..|+|||+++..|+.|.++.... ..++...-|+-|.|.|
T Consensus 1243 eg~A~nAIDGD---~~T~WHSaWs~-----ss~~~PgqWLqVDLGe~~tIsgf~YqpRqdg~~~NG~VksYkIeVS~dDG 1314 (1376)
T 2zxq_A 1243 EGPADLAQDGN---DSTHWHTSWSE-----NAVGNGTAWYQFNLNEPTTINGLRYLPRSGGMNANGKIKGYKITLTLADG 1314 (1376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHcCcCC---CCCeEEecccc-----cCCCCCceEEEEEcCCcEEEEEEEEecCccCCCCCCceEEEEEEEECCCC
Confidence 46789999987 57999987531 001122 67999999999999888764411 2356778899999559
Q ss_pred CCcccce
Q psy6778 157 KSWQPLQ 163 (314)
Q Consensus 157 ~tw~p~~ 163 (314)
.+|+++.
T Consensus 1315 ~nWttVa 1321 (1376)
T 2zxq_A 1315 TTKDVVT 1321 (1376)
T ss_dssp -------
T ss_pred CeEEEEE
Confidence 9998764
No 61
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A*
Probab=85.96 E-value=0.99 Score=40.87 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=41.2
Q ss_pred ceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC-CCCCCceEEEeecCCCCCcccce
Q psy6778 97 VTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK-SIKPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 97 ~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~-s~rP~~~~iekS~D~g~tw~p~~ 163 (314)
.+.|.+... ..+--|++||++...|+-|.++...+ ...-.+..|+-|.| |.+|.+|.
T Consensus 49 ~~~W~a~~~---------d~~qwLqVDLg~~~~Vt~V~tQG~~~~~~~vt~Y~l~yS~D-g~~W~~y~ 106 (257)
T 2vm9_A 49 SESWSSSVL---------DKNQFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLD-NVNWVEYN 106 (257)
T ss_dssp CSSEECSSC---------STTCCEEEEEEEEEEEEEEEEECCSSSSCEEEEEEEEEESS-SSCEEEGG
T ss_pred CCeeeCCCC---------CCCcEEeecCCCcEEEEEEEEeCCccCCceEEEEEEEEEcC-CCcEEEEc
Confidence 467866543 23567999999999999999998721 12234567888888 88998765
No 62
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=85.26 E-value=0.52 Score=38.00 Aligned_cols=17 Identities=35% Similarity=0.989 Sum_probs=10.3
Q ss_pred CceeeeCCCCCCCCCCc
Q psy6778 217 GELVCECRHNTAGKDCE 233 (314)
Q Consensus 217 g~~~C~C~~nT~G~~Ce 233 (314)
+...|.|+.+++|..|+
T Consensus 26 g~~~C~C~~Gy~G~~C~ 42 (135)
T 2vj3_A 26 GSFECQCLQGYTGPRCE 42 (135)
T ss_dssp SSEEEECCTTEESTTSC
T ss_pred CCEEEECCCCCcCCccc
Confidence 33466666666666664
No 63
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=85.19 E-value=0.52 Score=38.00 Aligned_cols=63 Identities=29% Similarity=0.685 Sum_probs=40.6
Q ss_pred CCCccCCCCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCCCcccCCCCccccCCCCCCCCC
Q psy6778 209 SRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGK 288 (314)
Q Consensus 209 ~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~G~ 288 (314)
..|... .+...|.|+.+++|.+|+.= .++|. .-.|. +...|....+..+| .|..+++|.
T Consensus 57 ~~C~~~-~g~~~C~C~~G~~G~~C~~~----------------~~~C~--~~~C~-~~g~C~~~~g~~~C-~C~~G~~G~ 115 (135)
T 2vj3_A 57 ATCLDQ-IGEFQCICMPGYEGVHCEVN----------------TDECA--SSPCL-HNGRCLDKINEFQC-ECPTGFTGH 115 (135)
T ss_dssp CEEEEC-SSCEEEECCTTEESSSSCEE----------------CCTTT--TCCST-TTCEEEECSSCEEE-ECCTTEESS
T ss_pred CEEeCC-CCCceeeCCCCCcCCcceec----------------CCccc--CCCcC-CCCEeECCCCCeEE-ECCCCCcCC
Confidence 457643 35568999999999888631 13454 22333 23456543445689 699999999
Q ss_pred CCCC
Q psy6778 289 DCEK 292 (314)
Q Consensus 289 ~Ce~ 292 (314)
+|+.
T Consensus 116 ~C~~ 119 (135)
T 2vj3_A 116 LCQV 119 (135)
T ss_dssp SSCE
T ss_pred ccCc
Confidence 9974
No 64
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=85.04 E-value=0.46 Score=49.22 Aligned_cols=56 Identities=29% Similarity=0.685 Sum_probs=31.1
Q ss_pred eeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCccc----CCCCCCCcccCCCCccccCCC----CCCCCCCCC
Q psy6778 220 VCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCK----CNGHASRCIKSPQGALVCECR----HNTAGKDCE 291 (314)
Q Consensus 220 ~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~----Cn~h~~~C~~~~~~G~C~~C~----~nt~G~~Ce 291 (314)
+|.|..++.|.+|| |..++++.+ ..+.|. +-+ |.+++ .|. .|+| .|. .++.|.+||
T Consensus 459 ~C~C~~Gy~G~~Ce-~~~~~~~~~-------~~~~C~--~~~~~~~Cs~~G-~C~----~g~C-~C~~~~~~Gy~G~~Ce 522 (690)
T 3fcs_B 459 VCRCGPGWLGSQCE-CSEEDYRPS-------QQDECS--PREGQPVCSQRG-ECL----CGQC-VCHSSDFGKITGKYCE 522 (690)
T ss_dssp EEEECTTCCSSSSC-CSCC-------------CCCCS--SSSSSCGGGGSE-EEC----SSSE-EECCCSSCCCBSTTSC
T ss_pred ceEeCCCccCCcee-eccCccCCc-------cCCcCC--CCCCCCCCCCCC-EEE----CCee-EeecCCCCCeeCCCcC
Confidence 58899999999996 555554322 223455 321 43332 343 2566 477 677777775
No 65
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=84.88 E-value=0.17 Score=45.06 Aligned_cols=70 Identities=24% Similarity=0.564 Sum_probs=40.4
Q ss_pred CCCCCCCCCccCCCCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCC--cccCCCCCCCcccCCCCccccC
Q psy6778 203 KCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGG--RCKCNGHASRCIKSPQGALVCE 280 (314)
Q Consensus 203 ~CnGHa~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~--~C~Cn~h~~~C~~~~~~G~C~~ 280 (314)
.|+|| ..|. . ++|.|..++.|.+|| |..+.+..+- ....|... ...|.+++ .|. .|+| .
T Consensus 97 ~Csg~-G~C~---~--g~C~C~~G~~G~~Ce-c~~~~~~~~~------~~~~C~~~~~~~~Csg~G-~C~----~g~C-~ 157 (217)
T 2p28_B 97 LCHGK-GFLE---C--GICRCDTGYIGKNCE-CQTQGRSSQE------LEGSCRKDNNSIICSGLG-DCV----CGQC-L 157 (217)
T ss_dssp TTTTS-EEEE---T--TEEEECTTEESTTSC-EECCCCC-GG------GGGGGBSSTTSCBGGGTE-EEE----TTEE-E
T ss_pred ccCCC-ceEE---C--CEEECCCCccCCccc-ccCccccccc------CCCcCCCCCCCCCCCCCC-EEe----CCce-E
Confidence 36677 5665 1 489999999999999 6544332110 11234310 12344432 343 3577 5
Q ss_pred CCCC------CCCCCCC
Q psy6778 281 CRHN------TAGKDCE 291 (314)
Q Consensus 281 C~~n------t~G~~Ce 291 (314)
|..+ +.|..|+
T Consensus 158 C~~gw~~~~~~~G~~Ce 174 (217)
T 2p28_B 158 CHTSDVPGKLIYGQYCE 174 (217)
T ss_dssp ECCCCSTTCCEESTTSC
T ss_pred CCCCCCCcccEECCCcc
Confidence 8887 6888887
No 66
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=84.72 E-value=2.4 Score=39.22 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=47.5
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC---------CCCCCceEEEee
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK---------SIKPDSLAIYKS 152 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~---------s~rP~~~~iekS 152 (314)
.|.+.+..+.+ ..+.|.+.... .....--|+|||++...|+-|+++.... ...-.+..|+-|
T Consensus 189 ~~~p~~arL~~---~~~~W~~~~~~------~~~~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~vt~Y~l~yS 259 (325)
T 2qqj_A 189 LWSPSAARLVS---SRSGWFPRIPQ------AQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYS 259 (325)
T ss_dssp CCCGGGGBTTT---CSSCBCCSSSS------CCTTTCCEEEEEEEEEEEEEEEEECBCCC----CCCCCBCEEEEEEEEE
T ss_pred ccCcchhhhcc---CCCcccccccc------CCCccceeEeccCCceeEEEEEecCCCCCCCccccCcceeEEEEEEEEE
Confidence 34555555533 24678765310 1123457999999999999999997621 123345778888
Q ss_pred cCCCCCccccee
Q psy6778 153 QDFGKSWQPLQF 164 (314)
Q Consensus 153 ~D~g~tw~p~~y 164 (314)
.| |.+|+.|.-
T Consensus 260 ~d-g~~W~~~~~ 270 (325)
T 2qqj_A 260 LN-GKDWEYIQD 270 (325)
T ss_dssp SS-SSSCEECEE
T ss_pred eC-CCCeEEEec
Confidence 88 899997654
No 67
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=83.66 E-value=0.56 Score=47.06 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=30.0
Q ss_pred ceeeeCCCCCC--CCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCC
Q psy6778 218 ELVCECRHNTA--GKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGH 265 (314)
Q Consensus 218 ~~~C~C~~nT~--G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h 265 (314)
.|+|.|+.+++ |..|+.|.+|||... .....|+ +|.-|.+
T Consensus 262 ~G~C~C~~G~e~~~~~C~aC~~g~~k~~------~~~~~C~--~CP~~S~ 303 (536)
T 3fl7_A 262 IGQCLCQAGYEKVEDACQACSPGFFKFE------ASESPCL--ECPEHTL 303 (536)
T ss_dssp BCCCEECTTEEEETTEEEECCTTEECCS------CCSSCCE--ECCSSEE
T ss_pred cCcEeccCccccCCceeeecCCCCCccc------CCCCccc--cCCCCCC
Confidence 47999999997 778999999999532 1335788 8766544
No 68
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=83.39 E-value=0.41 Score=40.32 Aligned_cols=55 Identities=27% Similarity=0.601 Sum_probs=36.9
Q ss_pred ceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCc-ccCCCCCCCcccC-CCCccccCCCCCCCCCCCCC
Q psy6778 218 ELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGR-CKCNGHASRCIKS-PQGALVCECRHNTAGKDCEK 292 (314)
Q Consensus 218 ~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~-C~Cn~h~~~C~~~-~~~G~C~~C~~nt~G~~Ce~ 292 (314)
.++|.|+.+++|.+|+.- .++|. . ..|..+ ..|... ..+++| .|..+++|.+||.
T Consensus 113 ~~~C~C~~G~~G~~C~~~----------------~~~C~--~~~~C~~~-g~C~~~~~~~~~C-~C~~G~~G~~Ce~ 169 (169)
T 2vj2_A 113 PWQCLCETNWGGQLCDKD----------------LNYCG--THQPCLNG-GTCSNTGPDKYQC-SCPEGYSGPNCEI 169 (169)
T ss_dssp TTCCEECTTEETTTTCEE----------------SCHHH--HTCCCCTT-CEEEECSTTCEEE-ECCTTCCSTTSCC
T ss_pred CCEEeCCCCCCCCcccCC----------------CCCCC--CCCCCCCC-CEEcCCCCCCcEe-ECCCCCcCcCcCC
Confidence 358889998889888741 13454 2 344433 356532 356899 6999999999974
No 69
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A
Probab=82.51 E-value=1.3 Score=36.96 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=39.0
Q ss_pred ceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC---CCCCCceEEEeecCCCCCcccce
Q psy6778 97 VTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 97 ~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~---s~rP~~~~iekS~D~g~tw~p~~ 163 (314)
...|.+... ...--|+|||++...|+-|+++-... ...-.+..|+-|.| |.+|..|.
T Consensus 47 ~~aW~a~~~---------d~~qwLqVDLg~~~~VtgV~tqG~~~~~~~~~v~~y~l~yS~D-g~~W~~~~ 106 (159)
T 3hny_M 47 SNAWRPQVN---------NPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQD-GHQWTLFF 106 (159)
T ss_dssp SCSBCCSSC---------STTCCEEEEEEEEEEEEEEEEECEEETTEEEEEEEEEEEEESS-SSSCEECE
T ss_pred CCccCCCCC---------CCCCeEEcccCCcEEEEEEEeecCCCCCccceEEEEEEEEEEC-CCcEEEEe
Confidence 346766543 23567999999999999999986410 11223456777877 89999864
No 70
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=82.42 E-value=2.5 Score=42.28 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=47.5
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC---------CCCCCceEEEee
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK---------SIKPDSLAIYKS 152 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~---------s~rP~~~~iekS 152 (314)
.|.+.+..+.+ ..+.|.+.... .....--|+|||++...|+-|+++.... ..--.+..|+-|
T Consensus 437 ~~~p~~arl~~---~~~~W~~~~~~------~~~~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~~S 507 (579)
T 2qqk_A 437 LWSPSAARLVS---SRSGWFPRIPQ------AQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYS 507 (579)
T ss_dssp -CCGGGGBTTT---CSSCBCCSSTT------CCTTTCCEEEEEEEEEEEEEEEEECBC---------CCBCEEEEEEEEE
T ss_pred ccCchhheecc---cCcCCcccccc------cCCccceEEEecCCceEEEEEEeCCCCCCCCccccccceeeEEEEEEEE
Confidence 35566665543 24678775320 1124567999999999999999997620 122345678888
Q ss_pred cCCCCCccccee
Q psy6778 153 QDFGKSWQPLQF 164 (314)
Q Consensus 153 ~D~g~tw~p~~y 164 (314)
.| |.+|++|.-
T Consensus 508 ~d-g~~W~~~~~ 518 (579)
T 2qqk_A 508 LN-GKDWEYIQD 518 (579)
T ss_dssp SS-SSCCEECBC
T ss_pred cC-CCceeEEEc
Confidence 77 899997754
No 71
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=82.18 E-value=1.4 Score=44.84 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=49.6
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC---CCCCCceEEEeecCCCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKS 158 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~---s~rP~~~~iekS~D~g~t 158 (314)
.|.+.++.+.+. ...+.|.+.... ......--|+|||++...|+-|.++.... ..+-.+..|+-|.| |.+
T Consensus 354 ~~~p~~arl~~~-~~~~~W~~~~~~-----~~~~~~qwlqVDLg~~~~vt~v~tqg~~~~~~~~~v~~y~i~yS~D-g~~ 426 (647)
T 1sdd_B 354 YWEPKLARLNNG-GSYNAWIAEKLS-----TEFNPEPWIQVDMQKEVLLTGIQTQGAKHYLKPYYTTEFCVAYSLD-RKN 426 (647)
T ss_dssp TCCGGGCBTTCC-SSSCSEECSCCC-----CSSCCCSCEEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEESS-SSS
T ss_pred ccccceeeecCC-CCcccccCCCCc-----ccccccceEEeccCCeEEEEEEEEcCCCCCCCccEEEEEEEEEEcC-CCc
Confidence 466776766542 223678776541 00112467999999999999999997611 12334577888988 789
Q ss_pred cccce
Q psy6778 159 WQPLQ 163 (314)
Q Consensus 159 w~p~~ 163 (314)
|..|.
T Consensus 427 W~~~~ 431 (647)
T 1sdd_B 427 WRIFK 431 (647)
T ss_dssp CEECC
T ss_pred eEEec
Confidence 98764
No 72
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=81.93 E-value=3.1 Score=40.36 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=46.8
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC---------CCCCCceEEEee
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK---------SIKPDSLAIYKS 152 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~---------s~rP~~~~iekS 152 (314)
.+.+.+..+.+ ..+.|.+.... .....--|+|||++...|+-|+++.... ...-.+..|+-|
T Consensus 318 ~~~p~~arl~~---~~~~W~~~~~~------~~~~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~yS 388 (460)
T 2qqo_A 318 LWSPSAARLVS---SRSGWFPRIPQ------AQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYS 388 (460)
T ss_dssp SCCGGGGBTTT---CSSCBCCSSSS------CCTTTCCEEEEEEEEEEEEEEEEECCCCC--CCCGGGCCCEEEEEEEEE
T ss_pred ccCcchhhhcc---CCCCccccccc------CCCccceEEEcCCCceEEEEEEecCCCCCCCccccccceeEEEEEEEEE
Confidence 34555554433 24678765320 1123457999999999999999997620 112245678888
Q ss_pred cCCCCCccccee
Q psy6778 153 QDFGKSWQPLQF 164 (314)
Q Consensus 153 ~D~g~tw~p~~y 164 (314)
.| |.+|++|.-
T Consensus 389 ~d-g~~W~~~~~ 399 (460)
T 2qqo_A 389 LN-GKDWEYIQD 399 (460)
T ss_dssp SS-SSSCEECEE
T ss_pred eC-CCceEEEEC
Confidence 88 899998754
No 73
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9
Probab=80.03 E-value=1.5 Score=39.14 Aligned_cols=57 Identities=21% Similarity=0.522 Sum_probs=37.6
Q ss_pred CCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeec---cCCCCCCceEEEee
Q psy6778 83 FPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFC---PKSIKPDSLAIYKS 152 (314)
Q Consensus 83 hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~---~~s~rP~~~~iekS 152 (314)
+.+..|.|.+ ..|+|||... .|+.++|+ +.+...|..|.|-+. .+|..|..+.|.--
T Consensus 70 ~gV~~L~D~s---~~TyWQSDG~--------qPH~ItI~--f~k~v~I~~L~iyvD~~~DeSYtPs~I~V~aG 129 (221)
T 1gqp_A 70 NPVDFALDDN---YDTFWQSDGG--------QPHQLDIM--FSKRMDICVMAIFFSMIADESYAPSLVKVYAG 129 (221)
T ss_dssp CCGGGGSSSC---TTCCEECCSS--------SSEEEEEE--EEEEEEECEEEEEEEHHHHGGGSEEEEEEEEE
T ss_pred CCHHHhcCCC---ccceeccCCC--------CCeEEEEE--EcCCceEEEEEEEECCCCCCCCCCEEEEEEEe
Confidence 4677788866 5799999754 25555555 556666666555443 35788888887543
No 74
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.59 E-value=0.5 Score=46.37 Aligned_cols=47 Identities=23% Similarity=0.683 Sum_probs=11.3
Q ss_pred eeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCCCcccCCCCccccCCCCCCCCCCCCC
Q psy6778 220 VCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEK 292 (314)
Q Consensus 220 ~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~G~~Ce~ 292 (314)
.|.|..+++|.+|+. ..|. + .|.+ ...|.- ...| .|..+++|.+|+.
T Consensus 409 ~C~C~~G~~G~~C~~------------------~~C~--~-~C~~-~g~C~~---~~~C-~C~~G~~G~~C~~ 455 (463)
T 2wg3_C 409 KCCCSPGWEGDFCRT------------------AKCE--P-ACRH-GGVCVR---PNKC-LCKKGYLGPQCEQ 455 (463)
T ss_dssp CEEECTTEESTTSCE------------------ECC-------------------------------------
T ss_pred eECCCCCcCCCcCCc------------------CcCC--C-CCCC-CCEECC---CCEE-ECCCCcccCCCCC
Confidence 677777777777642 2465 4 5543 335652 3688 6999999999986
No 75
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Probab=77.56 E-value=0.46 Score=50.61 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred CcchhhccCCceeecCc--cCCCCCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCceeeccCCcccCCcCCCCCC
Q psy6778 39 PDFVNAAFGQEVKVNSV--CGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPD 116 (314)
Q Consensus 39 P~~~nla~g~~v~assT--CG~~~~e~yC~~~~~C~~Cd~~~p~~~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~ 116 (314)
|.-.|||++++|.+||- |- ..-+++.++|+....+.+=|-|.. .
T Consensus 797 ~~~~NLAl~k~ataSs~~~~~-----------------------~~e~p~kaVDG~~~~~stKWcs~~-----------~ 842 (937)
T 3gdb_A 797 PLAENIVPGATVIDSTFPKTE-----------------------GGEGIEGMLNGTITSLSDKWSSAQ-----------L 842 (937)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccccCCCceEEecccccc-----------------------cccCHHHhcCCcccCCCCccccCC-----------C
Confidence 66889999999988753 21 123567789987654444554432 2
Q ss_pred ceeeEeecCceeEEEEEEeeeccCCCCC----------CceEEEeecCCCCCcccc
Q psy6778 117 NVTLTLSLGKKFELTYISLSFCPKSIKP----------DSLAIYKSQDFGKSWQPL 162 (314)
Q Consensus 117 ~vtitl~l~~~f~~~~v~l~f~~~s~rP----------~~~~iekS~D~g~tw~p~ 162 (314)
.-.|+|||++++.|....|++. .--- ...-|+-|.| +.+|+..
T Consensus 843 ~~wl~vDLg~~~tI~~~vv~ha--gaggE~~~~~~~NT~dF~Lq~s~d-~~~W~~v 895 (937)
T 3gdb_A 843 SGSVDIRLTKSRTVVRWVMDHA--GAGGESVNDGLMNTKDFDLYYKDA-DGEWKLA 895 (937)
T ss_dssp --------------------------------------------------------
T ss_pred CceEEEECCCcEEEeEEEEEec--ccCccccccccccccceEEEEecC-CCCeEEe
Confidence 3578999999999999888877 3222 2356777766 7788754
No 76
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=75.99 E-value=2.5 Score=40.78 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=45.0
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCC-----CCCCceEEEeecCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKS-----IKPDSLAIYKSQDFG 156 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s-----~rP~~~~iekS~D~g 156 (314)
.|.+....|.. ..+.|.+... ...--|+|||++...|+-|.++..+.. ..-.+..|+-|.| |
T Consensus 164 ~~~p~~arl~~---~~~~W~~~~~---------~~~qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~d-g 230 (450)
T 2qqm_A 164 NWSAERSRLNY---PENGWTPGED---------SYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSN-G 230 (450)
T ss_dssp GGCGGGGBTTC---SSCCBCCSSC---------STTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-S
T ss_pred cchhhcccccc---CCCCccCCCC---------CCCceEEEcccceEEEEEEeccCCCCCCCCcceeEEEEEEEEeCC-C
Confidence 34555555533 2356755432 124569999999999999999876211 1224567888888 8
Q ss_pred CCcccce
Q psy6778 157 KSWQPLQ 163 (314)
Q Consensus 157 ~tw~p~~ 163 (314)
.+|..|.
T Consensus 231 ~~W~~~~ 237 (450)
T 2qqm_A 231 EDWITIK 237 (450)
T ss_dssp SSEEECB
T ss_pred CceeEEe
Confidence 9998764
No 77
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A*
Probab=70.28 E-value=8.3 Score=32.31 Aligned_cols=66 Identities=12% Similarity=-0.045 Sum_probs=44.1
Q ss_pred CceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCcee--EEEEEEeeecc-CCCCCCceEEEeecCC-CCCcc
Q psy6778 85 AEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKF--ELTYISLSFCP-KSIKPDSLAIYKSQDF-GKSWQ 160 (314)
Q Consensus 85 ~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f--~~~~v~l~f~~-~s~rP~~~~iekS~D~-g~tw~ 160 (314)
...++|++ ..|+|.++.. ..--|+|||+++. .|..++..-.. ...|+.-..+|-|.|. +++|.
T Consensus 25 ~~~~~DGn---~~T~f~~~~~----------~~~~i~iDLG~~~~~~l~~f~Y~Pr~~~~~~miGg~fegSnd~Df~~~~ 91 (155)
T 2yfu_A 25 IHKAFDGD---LNTFFDGPTA----------NGCWLGLDFGEGVRNVITQIKFCPRSGYEQRMIGGIFQGANKEDFSDAV 91 (155)
T ss_dssp GGGGGSSC---TTCCBCCSSS----------SSCEEEEECCTTCCEEEEEEEEECCTTCGGGGTTCEEEEESSTTCTTCE
T ss_pred hhheecCC---CCcEeEcCCC----------CCceEEEECCCCcceEEeeEEEecCcccccCCcEEEEEEECCCCCCCeE
Confidence 56799987 5789987542 2467899999976 56655443331 1235666889999852 58888
Q ss_pred cce
Q psy6778 161 PLQ 163 (314)
Q Consensus 161 p~~ 163 (314)
...
T Consensus 92 tL~ 94 (155)
T 2yfu_A 92 TLF 94 (155)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 78
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=68.94 E-value=8 Score=37.37 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=33.3
Q ss_pred eeeEeecCceeEEEEEEeeeccCCC-----CCCceEEEeecCCCCCcccce
Q psy6778 118 VTLTLSLGKKFELTYISLSFCPKSI-----KPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 118 vtitl~l~~~f~~~~v~l~f~~~s~-----rP~~~~iekS~D~g~tw~p~~ 163 (314)
--|+|||++...|+-|.++...... .-.+..|+-|.| |.+|..|+
T Consensus 186 ~wlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~d-g~~W~~~~ 235 (460)
T 2qqo_A 186 EYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTN-GEDWMVYR 235 (460)
T ss_dssp CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-SSSCEECE
T ss_pred eeEeccCCceEEEEEEEeecCCCCCCCccceEEEEEEEEEcC-CCCeeEec
Confidence 3499999999999999998762111 123456888888 89998765
No 79
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=68.48 E-value=11 Score=37.82 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=33.4
Q ss_pred ceeeEeecCceeEEEEEEeeeccCCC---CCCceEEEeecCCCCCccccee
Q psy6778 117 NVTLTLSLGKKFELTYISLSFCPKSI---KPDSLAIYKSQDFGKSWQPLQF 164 (314)
Q Consensus 117 ~vtitl~l~~~f~~~~v~l~f~~~s~---rP~~~~iekS~D~g~tw~p~~y 164 (314)
+--|+|||++...|+-|++|=.++.. .-.+..|+-|.| |.+|++|.-
T Consensus 464 ~qwLqVDLg~~~~VtgV~tQG~~~~~~~~~vtsY~l~yS~D-g~~W~~~~~ 513 (577)
T 4gz9_A 464 NEWLQVDLGDEKIVRGVIIQGGKHRENKVFMRKFKIAYSNN-GSDWKTIMD 513 (577)
T ss_dssp SCCEEEEEEEEEEEEEEEEECEESSSCEECEEEEEEEEESS-SSSCEECBC
T ss_pred CceEEEECCCcEEEEEEEEeCCCCCCcceeEEEEEEEEECC-CCCeEEEEc
Confidence 45699999999999999998541111 123456777777 899987753
No 80
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=65.75 E-value=4.9 Score=42.02 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=45.8
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccC---CCCCCceEEEeecCCCCC
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKS 158 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~---s~rP~~~~iekS~D~g~t 158 (314)
.|.+.++.+.+. ...+.|.+.. .+--|+|||++...|+-|.++..+. ...-.+..|+-|.| |.+
T Consensus 483 ~~~p~~arL~~~-~~~~aW~~~~-----------~~qwLQVDLg~~~~Vt~V~tQG~~~~~~~~~v~sY~I~yS~D-G~~ 549 (770)
T 2r7e_B 483 QWAPKLARLHYS-GSINAWSTKE-----------PFSWIKVDLLAPMIIHGIKTQGARQKFSSLYISQFIIMYSLD-GKK 549 (770)
T ss_dssp SCCTTCCSSCCS-TTCSSEECCS-----------SCCCEEEEEEEEEEECBCCCCCEECSSSEECCSEEEEEEESS-SSS
T ss_pred ccchheEEECCC-CCccccccCC-----------CCceEEecCCceEEEEEEEEcccCcCCcccceEEEEEEEecC-CCc
Confidence 355555544331 2245775521 2457999999999999999986521 12445678999998 799
Q ss_pred cccce
Q psy6778 159 WQPLQ 163 (314)
Q Consensus 159 w~p~~ 163 (314)
|..|.
T Consensus 550 W~~y~ 554 (770)
T 2r7e_B 550 WQTYR 554 (770)
T ss_dssp CBCCC
T ss_pred cEEee
Confidence 98764
No 81
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=65.26 E-value=3.1 Score=34.15 Aligned_cols=63 Identities=22% Similarity=0.513 Sum_probs=37.8
Q ss_pred CCCccCCCCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCCCc-ccCCCCccccCCCCCCC-
Q psy6778 209 SRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRC-IKSPQGALVCECRHNTA- 286 (314)
Q Consensus 209 ~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~~C-~~~~~~G~C~~C~~nt~- 286 (314)
..|... .+...|.|+.+++|.+|+.= ++|...++.|.. .| .-..++-.| .|..++.
T Consensus 60 g~C~~~-~~~y~C~C~~G~~G~~C~~~-----------------deC~~~~~~C~~---~C~~n~~g~y~C-~C~~Gy~l 117 (146)
T 1x7a_L 60 GLCKDD-INSYECWCQVGFEGKNCELD-----------------ATCNIKNGRCKQ---FCKTGADSKVLC-SCTTGYRL 117 (146)
T ss_dssp CEEEEC-SSCEEEECCSSEESTTTCEE-----------------CCTTSGGGSCSS---BCCCCSSSCCCC-BCCTTEEE
T ss_pred CEeECC-CCCEEEecCCCCcCCcCCCC-----------------ccccCCCCCCcC---CCCCCCCCCEEe-EcCCCcEe
Confidence 467643 34578999999999988631 234311233432 55 322345577 6888887
Q ss_pred ---CCCCCCC
Q psy6778 287 ---GKDCEKC 293 (314)
Q Consensus 287 ---G~~Ce~C 293 (314)
|.+|+.-
T Consensus 118 ~~dG~~C~~~ 127 (146)
T 1x7a_L 118 APDQKSCKPA 127 (146)
T ss_dssp CTTSSSEEEC
T ss_pred CCCCCcCCCC
Confidence 7777653
No 82
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=64.44 E-value=3.6 Score=25.66 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=17.8
Q ss_pred CCCcccCCCCccccCCCCCCCCCCCCC
Q psy6778 266 ASRCIKSPQGALVCECRHNTAGKDCEK 292 (314)
Q Consensus 266 ~~~C~~~~~~G~C~~C~~nt~G~~Ce~ 292 (314)
+..|.-...+-.| .|..+++|.+||.
T Consensus 14 gg~C~~~~~~~~C-~C~~G~~G~~Ce~ 39 (39)
T 1edm_B 14 GGSCKDDINSYEC-WCPFGFEGKNCEL 39 (39)
T ss_dssp TCEEEEETTEEEE-ECCTTCCSTTSCC
T ss_pred CCEeEcCCCceEe-ECCCCCcCCccCC
Confidence 3456533344578 6999999999874
No 83
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=62.96 E-value=1.6 Score=35.61 Aligned_cols=25 Identities=24% Similarity=0.680 Sum_probs=18.6
Q ss_pred CCCccCCCCceeeeCCCCCCCCCCcc
Q psy6778 209 SRCIKSPQGELVCECRHNTAGKDCEK 234 (314)
Q Consensus 209 ~~C~~~~~g~~~C~C~~nT~G~~Ce~ 234 (314)
..|... .+...|.|+.+++|.+|+.
T Consensus 59 g~C~~~-~g~y~C~C~~G~~G~~C~~ 83 (142)
T 2c4f_L 59 GSCKDQ-LQSYICFCLPAFEGRNCET 83 (142)
T ss_dssp CEEEEE-TTEEEEECCTTEESTTSCE
T ss_pred CEEeCC-CCCEEeeCCCCccCCcccc
Confidence 467643 3557899999999998864
No 84
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=61.31 E-value=5.6 Score=40.30 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=34.3
Q ss_pred ceeeEeecCceeEEEEEEeeeccC---CCCCCceEEEeecCCCCCccccee
Q psy6778 117 NVTLTLSLGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKSWQPLQF 164 (314)
Q Consensus 117 ~vtitl~l~~~f~~~~v~l~f~~~---s~rP~~~~iekS~D~g~tw~p~~y 164 (314)
.--|+|||++...|+-|+++.... ...-.+..|+-|.| |.+|++|.-
T Consensus 543 ~qwLqVDLg~~~~vt~v~tqg~~~~~~~~~v~~y~l~~S~d-g~~W~~~~~ 592 (647)
T 1sdd_B 543 NQWLQIDLLKIKKITAIVTQGCKSLSSEMYVKSYTIHYSDQ-GTDWKPYRE 592 (647)
T ss_dssp CCCEEEEEEEEEEEEEEEEECEEETTEEEEEEEECEEEESS-SSCCEECCC
T ss_pred CcEEEEeCCCceEEEEEEeecCCCCCCCcceEEEEEEEECC-CCcEEEEEc
Confidence 456899999999999999987511 11223556888887 899997653
No 85
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=60.57 E-value=3.9 Score=31.81 Aligned_cols=66 Identities=20% Similarity=0.482 Sum_probs=36.1
Q ss_pred CCCccCCCCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCCCcccCCCCccccCCCCCCC--
Q psy6778 209 SRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTA-- 286 (314)
Q Consensus 209 ~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~-- 286 (314)
..|... .+...|.|+.+++|..|+.-.. .++|......|.. .|.-..++-.| .|..+++
T Consensus 26 g~C~~~-~~~y~C~C~~G~~G~~C~~~~~--------------~~~C~~~~~~C~~---~C~n~~g~y~C-~C~~G~~~~ 86 (114)
T 1aut_L 26 GTCIDG-IGSFSCDCRSGWEGRFCQREVS--------------FLNCSLDNGGCTH---YCLEEVGWRRC-SCAPGYKLG 86 (114)
T ss_dssp EEECCC-SSCCCEEECTTEESTTSCEECC--------------SSSSSSGGGGCSS---EEEECSSSEEE-ECCTTEEEC
T ss_pred CCCCCC-CCCcEeeCCCCCcCCCcCcCCc--------------CCcCcCCCCCCCC---EeECCCCCEEe-ECCCCeeEC
Confidence 457533 3456899999999998864211 1233311122221 45432345577 6888887
Q ss_pred --CCCCCCC
Q psy6778 287 --GKDCEKC 293 (314)
Q Consensus 287 --G~~Ce~C 293 (314)
|..|+..
T Consensus 87 ~~g~~C~~~ 95 (114)
T 1aut_L 87 DDLLQCHPA 95 (114)
T ss_dssp TTSSCEEEC
T ss_pred CCCCccCcC
Confidence 5556543
No 86
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=60.25 E-value=3.5 Score=26.83 Aligned_cols=26 Identities=15% Similarity=0.514 Sum_probs=19.0
Q ss_pred CCCcc-CCCCceeeeCCCCCCCCCCcc
Q psy6778 209 SRCIK-SPQGELVCECRHNTAGKDCEK 234 (314)
Q Consensus 209 ~~C~~-~~~g~~~C~C~~nT~G~~Ce~ 234 (314)
..|.. +..+...|.|..+++|.+||.
T Consensus 15 g~C~~~~~~~~~~C~C~~G~~G~~Ce~ 41 (45)
T 1a3p_A 15 GVXMHIESLDSYTCNCVIGYSGDRCQT 41 (45)
T ss_dssp CEEEECTTTSSEEEECCTTEETTTTCE
T ss_pred CEEEeecCCCCEEEEcCCCCcCCcCCc
Confidence 46752 223557899999999999974
No 87
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=58.44 E-value=1.6 Score=38.65 Aligned_cols=16 Identities=19% Similarity=0.588 Sum_probs=13.5
Q ss_pred ccccCCCCCCCCCCCCC
Q psy6778 276 ALVCECRHNTAGKDCEK 292 (314)
Q Consensus 276 G~C~~C~~nt~G~~Ce~ 292 (314)
|+| .|..+++|..|+.
T Consensus 199 g~C-~C~~G~~G~~C~~ 214 (217)
T 2p28_B 199 GKC-RCHPGFEGSACQH 214 (217)
T ss_dssp TEE-EECTTEESTTSCE
T ss_pred Cee-ECCCCCccCCcCC
Confidence 688 6999999998874
No 88
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=57.12 E-value=12 Score=37.11 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=34.0
Q ss_pred ceeeEeecCceeEEEEEEeeeccCCC-----CCCceEEEeecCCCCCcccce
Q psy6778 117 NVTLTLSLGKKFELTYISLSFCPKSI-----KPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 117 ~vtitl~l~~~f~~~~v~l~f~~~s~-----rP~~~~iekS~D~g~tw~p~~ 163 (314)
.--|+|||++...|+-|.++...... .-.+..|+-|.| |.+|..|.
T Consensus 304 ~qwlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~d-g~~W~~~~ 354 (579)
T 2qqk_A 304 KEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTN-GEDWMVYR 354 (579)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-SSSCEECE
T ss_pred CceEEeecceeEEEEEEEccCCccCCCCcccceEEEEEEEECC-CCceeeee
Confidence 34599999999999999999762111 123467888888 89998765
No 89
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=56.82 E-value=7.9 Score=28.97 Aligned_cols=26 Identities=27% Similarity=0.603 Sum_probs=18.4
Q ss_pred CCCcccCC--CCccccCCCCCCCCCCCCC
Q psy6778 266 ASRCIKSP--QGALVCECRHNTAGKDCEK 292 (314)
Q Consensus 266 ~~~C~~~~--~~G~C~~C~~nt~G~~Ce~ 292 (314)
+..|.... .+..| .|..+++|.+||.
T Consensus 59 gg~C~~~~~~~~~~C-~C~~G~~G~~Ce~ 86 (91)
T 1tpg_A 59 GGTCQQALYFSDFVC-QCPEGFAGKSCEI 86 (91)
T ss_dssp TCEEEEESSSSCEEE-ECCTTCBSSSCCB
T ss_pred CCEeecCCCCCCeEe-ECCCCCcCCcCCc
Confidence 34665322 45688 6999999999984
No 90
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=56.81 E-value=1.8 Score=37.75 Aligned_cols=64 Identities=25% Similarity=0.628 Sum_probs=20.8
Q ss_pred CCCccCCCCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCCCcccCCCCccccCCCCCCC--
Q psy6778 209 SRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTA-- 286 (314)
Q Consensus 209 ~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~-- 286 (314)
..|... .+...|.|..+++|.+|+.= ..+.|...++.|.. .|.-..++..| .|..++.
T Consensus 54 g~C~n~-~g~y~C~C~~Gf~G~~Ce~~---------------i~deC~~~~~~C~~---~C~n~~gsy~C-~C~~Gy~l~ 113 (195)
T 1nfu_B 54 GKCKDG-LGEYTCTCLEGFEGKNCELF---------------TRKLCSLDNGDCDQ---FCHEEQNSVVC-SCARGYTLA 113 (195)
T ss_dssp -------------------------------------------CCGGGTGGGGCSS---EEEEETTEEEE-ECCTTEEEC
T ss_pred CEeECC-CCCeeEeCCCCceecccccc---------------ccccccCCCCCCCC---EeECCCCCeEE-ECCCCceeC
Confidence 467533 34568999999999887530 01345421344543 56433345678 6888888
Q ss_pred --CCCCCC
Q psy6778 287 --GKDCEK 292 (314)
Q Consensus 287 --G~~Ce~ 292 (314)
|.+|+.
T Consensus 114 ~dG~~C~~ 121 (195)
T 1nfu_B 114 DNGKACIP 121 (195)
T ss_dssp TTSSCEEE
T ss_pred CCCCcccc
Confidence 888864
No 91
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=56.17 E-value=4 Score=28.31 Aligned_cols=18 Identities=22% Similarity=0.874 Sum_probs=15.7
Q ss_pred CceeeeCCCCCCCCCCcc
Q psy6778 217 GELVCECRHNTAGKDCEK 234 (314)
Q Consensus 217 g~~~C~C~~nT~G~~Ce~ 234 (314)
+...|.|+.+++|.+||.
T Consensus 32 ~~y~C~C~~g~~G~~CE~ 49 (55)
T 3u7u_G 32 SRYLCKCPNEFTGDRCQN 49 (55)
T ss_dssp CCEEEEECTTEESTTSCE
T ss_pred CCEeEeCCCCCcCCCcCc
Confidence 457899999999999985
No 92
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=55.93 E-value=12 Score=25.03 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCCCcc--cCCCCccccCCCCCCCCCCCCCCCCCCC
Q psy6778 265 HASRCI--KSPQGALVCECRHNTAGKDCEKCKPFFS 298 (314)
Q Consensus 265 h~~~C~--~~~~~G~C~~C~~nt~G~~Ce~C~~Gyy 298 (314)
++..|. ...++-.| .|..+++|.+|+.=...|+
T Consensus 16 ngg~C~~~~~~~~~~C-~C~~G~~G~~Ce~~~~~~~ 50 (53)
T 1egf_A 16 NGGVCMHIESLDSYTC-NCVIGYSGDRCQTRDLRWW 50 (53)
T ss_dssp SSCEEEEESSSSCEEE-ECCTTCCSSSSCCCSCCCC
T ss_pred CCcEEEeeCCCCCEEE-ECCCCCcCCcCCccCcccc
Confidence 445676 23345688 6999999999987554444
No 93
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=55.43 E-value=13 Score=35.31 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=35.1
Q ss_pred CceeeEeecCceeEEEEEEeeeccC----CCCCCceEEEeecCCCCCcccce
Q psy6778 116 DNVTLTLSLGKKFELTYISLSFCPK----SIKPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 116 ~~vtitl~l~~~f~~~~v~l~f~~~----s~rP~~~~iekS~D~g~tw~p~~ 163 (314)
.+--|+|||++...|+-|+++-... ..--.+..|+-|.| |.+|+.|+
T Consensus 58 ~~qWLQVDLg~~~~VtgV~TQGr~~~g~~~~wVtsY~l~yS~D-G~~W~~y~ 108 (351)
T 4ag4_A 58 EEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRD-GRRWMGWK 108 (351)
T ss_dssp CCCCEEEEEEEEEEEEEEEEECBCGGGTCCBCCSEEEEEEESS-SSCEEECC
T ss_pred CCCEEEecCCCeEEEEEEEEecccCCCCccceEEEEEEEEEeC-CCcEEEEE
Confidence 4567899999999999999986521 12234567888888 89998764
No 94
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=52.20 E-value=2.3 Score=34.24 Aligned_cols=64 Identities=25% Similarity=0.628 Sum_probs=19.9
Q ss_pred CCCccCCCCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCCCcccCCCCccccCCCCCCC--
Q psy6778 209 SRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTA-- 286 (314)
Q Consensus 209 ~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~~C~~~~~~G~C~~C~~nt~-- 286 (314)
..|... .+...|.|+.+++|..|+.= ..+.|...+..|.. .|.-..++..| .|..+++
T Consensus 54 g~C~~~-~~~y~C~C~~G~~G~~C~~~---------------i~d~C~~~~~~C~~---~C~~~~g~y~C-~C~~Gy~l~ 113 (134)
T 2vh0_B 54 GKCKDG-LGEYTCTCLEGFEGKNCELF---------------TRKLCSLDNGDCDQ---FCHEEQNSVVC-SCARGYTLA 113 (134)
T ss_dssp -------------------------------------------CCGGGTGGGGCSS---EEEEETTEEEE-ECCTTEEEC
T ss_pred CCcccC-CCCEEeeCCCCccCCccccC---------------CCCccccCCCCCCC---EeECCCCCEEE-ECCCCcEEC
Confidence 457533 24467888888888877530 01235411233432 56433344578 6888888
Q ss_pred --CCCCCC
Q psy6778 287 --GKDCEK 292 (314)
Q Consensus 287 --G~~Ce~ 292 (314)
|.+|+.
T Consensus 114 ~~g~~C~~ 121 (134)
T 2vh0_B 114 DNGKACIP 121 (134)
T ss_dssp TTSSCEEE
T ss_pred CCCCccCc
Confidence 777764
No 95
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=52.07 E-value=4.7 Score=27.49 Aligned_cols=27 Identities=19% Similarity=0.551 Sum_probs=19.7
Q ss_pred CCCcc-CCCCceeeeCCCCCCCCCCccC
Q psy6778 209 SRCIK-SPQGELVCECRHNTAGKDCEKC 235 (314)
Q Consensus 209 ~~C~~-~~~g~~~C~C~~nT~G~~Ce~C 235 (314)
..|.. +..+...|.|..+++|.+||.=
T Consensus 18 G~C~~~~~~~~~~C~C~~GytG~~Ce~~ 45 (53)
T 1nql_B 18 GVCMYIEALDKYACNCVVGYIGERCQYR 45 (53)
T ss_dssp CEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred eEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence 45752 2235578999999999999863
No 96
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=51.74 E-value=12 Score=25.17 Aligned_cols=32 Identities=16% Similarity=0.468 Sum_probs=22.5
Q ss_pred CCCcc-CCCCceeeeCCCCCCCCCCccCCCCCC
Q psy6778 209 SRCIK-SPQGELVCECRHNTAGKDCEKCKPFFS 240 (314)
Q Consensus 209 ~~C~~-~~~g~~~C~C~~nT~G~~Ce~C~pgy~ 240 (314)
..|.. +..+...|.|+.+++|.+||.=...|+
T Consensus 18 g~C~~~~~~~~~~C~C~~G~~G~~Ce~~~~~~~ 50 (53)
T 1egf_A 18 GVCMHIESLDSYTCNCVIGYSGDRCQTRDLRWW 50 (53)
T ss_dssp CEEEEESSSSCEEEECCTTCCSSSSCCCSCCCC
T ss_pred cEEEeeCCCCCEEEECCCCCcCCcCCccCcccc
Confidence 46762 223557899999999999987544443
No 97
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=49.55 E-value=13 Score=38.71 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=35.1
Q ss_pred ceeeEeecCceeEEEEEEeeeccC---CCCCCceEEEeecCCCCCcccce
Q psy6778 117 NVTLTLSLGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 117 ~vtitl~l~~~f~~~~v~l~f~~~---s~rP~~~~iekS~D~g~tw~p~~ 163 (314)
.--|+|||++...|+-|+++.... ...-.+..|+-|.| |.+|..|.
T Consensus 665 ~qwLQVDLg~~~~VtgV~tQG~~~~~~~~~VtsY~l~yS~D-G~~W~~y~ 713 (770)
T 2r7e_B 665 KEWLQVDFQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQD-GHQWTLFF 713 (770)
T ss_dssp SCCEEECCSSCCCBCCEEECCCCCTTCCCCCCEEEECCBSS-TTCBCCCB
T ss_pred CceEEEccccceEEEEEEEeCCcCcCcccceEEEEEEEEcC-CCcEEEEe
Confidence 457999999999999999986521 12345677888877 89999765
No 98
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=47.30 E-value=9 Score=25.23 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=18.3
Q ss_pred CCccC-CCCceeeeCCCCCCCCCCcc
Q psy6778 210 RCIKS-PQGELVCECRHNTAGKDCEK 234 (314)
Q Consensus 210 ~C~~~-~~g~~~C~C~~nT~G~~Ce~ 234 (314)
.|... ..+...|.|..+++|.+||.
T Consensus 18 ~C~~~~~~~~~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 18 QCIYLVDMSQNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp EEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred EeeccCCCCCEEEECCCCCccCCCCc
Confidence 67531 12456899999999999984
No 99
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=46.83 E-value=6 Score=32.39 Aligned_cols=65 Identities=31% Similarity=0.659 Sum_probs=40.5
Q ss_pred CCCCCCccCCCCCCCCCCCCCcccCCCCccCCccc-CCCC-CC----CcccCCCCccccCCCCCC-------CCCCCCCC
Q psy6778 227 TAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCK-CNGH-AS----RCIKSPQGALVCECRHNT-------AGKDCEKC 293 (314)
Q Consensus 227 T~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~-Cn~h-~~----~C~~~~~~G~C~~C~~nt-------~G~~Ce~C 293 (314)
+....|..|.+|+|...|. ...|+ +|. |... +. .|.. ...-+| .|+.++ .+..|..|
T Consensus 35 ~~~t~C~~C~~gty~~~~~------~~~C~--~C~~C~~~~g~~~~~~Ct~-t~dt~C-~C~~G~y~~~g~~~~~~C~~C 104 (146)
T 2hey_R 35 SQNTVCRPCGPGFYNDVVS------SKPCK--PCTWCNLRSGSERKQLCTA-TQDTVC-RCRAGTQPLDSYKPGVDCAPC 104 (146)
T ss_dssp SCCCEEEECCTTEECCSCB------SSCCE--ECCCCCGGGTEEEEECCBT-TBCCEE-EECTTEEESCSSSTTSSEEEC
T ss_pred CCCCCcccCCCCCEECCCC------CCcCc--ccCCCCCCCCceEeccCcc-CCCccc-cCCCCeeeCCCcccCcccccC
Confidence 3567899999999977653 23677 764 5432 11 2321 123466 466553 35679999
Q ss_pred CCCCCCCC
Q psy6778 294 KPFFSDRP 301 (314)
Q Consensus 294 ~~Gyy~~p 301 (314)
.+|+|.+-
T Consensus 105 ~~Gtfs~~ 112 (146)
T 2hey_R 105 PPGHFSPG 112 (146)
T ss_dssp CTTEECCS
T ss_pred CCCcccCC
Confidence 99999874
No 100
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=42.40 E-value=9.5 Score=26.48 Aligned_cols=18 Identities=22% Similarity=0.824 Sum_probs=15.4
Q ss_pred CceeeeCCCCCCCCCCcc
Q psy6778 217 GELVCECRHNTAGKDCEK 234 (314)
Q Consensus 217 g~~~C~C~~nT~G~~Ce~ 234 (314)
+...|.|+.+++|.+||.
T Consensus 30 ~~y~C~C~~Gf~G~~Ce~ 47 (63)
T 1hae_A 30 SRYLCKCQPGFTGARCTE 47 (63)
T ss_dssp CCEEEECCTTEESTTSCE
T ss_pred CCEEEECCCCCcCCccCc
Confidence 456899999999999973
No 101
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=42.24 E-value=7.1 Score=27.58 Aligned_cols=30 Identities=20% Similarity=0.572 Sum_probs=21.1
Q ss_pred CCCCC-CCCccCCCCceeeeCCCCCC-CCCCcc
Q psy6778 204 CNGHA-SRCIKSPQGELVCECRHNTA-GKDCEK 234 (314)
Q Consensus 204 CnGHa-~~C~~~~~g~~~C~C~~nT~-G~~Ce~ 234 (314)
|...| ..|... .+...|.|+.+++ |.+|+.
T Consensus 19 C~nga~gtC~~~-~g~y~C~C~~Gy~~G~~C~~ 50 (61)
T 2k2s_B 19 CGPEAAGTCKET-NSGYICRCNQGYRISLDGTG 50 (61)
T ss_dssp SCSSSCCEEEEC-SSEEEEECCTTEEEEECSSS
T ss_pred CcCCCccccccC-CCceEeECCCCCccCCCCCC
Confidence 43333 578654 3557899999999 998853
No 102
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=41.94 E-value=6.3 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=14.8
Q ss_pred ceeeeCCCCCCCCCCcc
Q psy6778 218 ELVCECRHNTAGKDCEK 234 (314)
Q Consensus 218 ~~~C~C~~nT~G~~Ce~ 234 (314)
...|.|..+++|.+||.
T Consensus 32 ~y~C~C~~Gf~G~~Ce~ 48 (52)
T 3ca7_A 32 VYSCECAIGFMGQRCEY 48 (52)
T ss_dssp EEEEECCTTEESTTSCE
T ss_pred CEEEECCCCCcCCCCcc
Confidence 45899999999999974
No 103
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=41.88 E-value=12 Score=32.45 Aligned_cols=30 Identities=30% Similarity=0.685 Sum_probs=21.2
Q ss_pred CCCCCCCCCccCCCCceeeeCCCCCCCCCCccCCC
Q psy6778 203 KCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKP 237 (314)
Q Consensus 203 ~CnGHa~~C~~~~~g~~~C~C~~nT~G~~Ce~C~p 237 (314)
.|-++ ..|. +..+|.|+.+++|.+|+.=+-
T Consensus 154 ~C~ng-G~Cv----~P~~C~C~~Gw~G~~C~~~~~ 183 (188)
T 2ygo_A 154 GCRNG-GFCN----ERRICECPDGFHGPHCEGTKH 183 (188)
T ss_dssp CCCTT-CEEC----TTSCEECCTTCBTTTTCBC--
T ss_pred CCCCC-CEeC----CCCcccCcCCCCCCCCcCCcc
Confidence 45554 5676 234899999999999987654
No 104
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=41.59 E-value=13 Score=25.22 Aligned_cols=25 Identities=20% Similarity=0.656 Sum_probs=18.7
Q ss_pred CCcc-CCCCceeeeCCCCCCCCCCcc
Q psy6778 210 RCIK-SPQGELVCECRHNTAGKDCEK 234 (314)
Q Consensus 210 ~C~~-~~~g~~~C~C~~nT~G~~Ce~ 234 (314)
.|.. ...+...|.|..+++|.+||.
T Consensus 24 ~C~~i~~~~~~~C~C~~gy~G~RCe~ 49 (50)
T 2rnl_A 24 ECKYIEHLEAVTCKCQQEYFGERCGE 49 (50)
T ss_dssp EEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred EEEEecCCCCeeEECCCCcccccccc
Confidence 6752 223456899999999999984
No 105
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=38.99 E-value=30 Score=31.09 Aligned_cols=9 Identities=11% Similarity=0.191 Sum_probs=5.3
Q ss_pred CCCCCCCCC
Q psy6778 293 CKPFFSDRP 301 (314)
Q Consensus 293 C~~Gyy~~p 301 (314)
|.+||.+.+
T Consensus 69 C~~g~~~~~ 77 (317)
T 3h5c_B 69 CAQGYRLGE 77 (317)
T ss_dssp CCTTEECCT
T ss_pred ccccccccc
Confidence 566666644
No 106
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=38.84 E-value=50 Score=31.70 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=19.8
Q ss_pred CceEEEeecCCCCCcccceeehh
Q psy6778 145 DSLAIYKSQDFGKSWQPLQFYSS 167 (314)
Q Consensus 145 ~~~~iekS~D~g~tw~p~~yya~ 167 (314)
+.++|+-|.|.|.+|..++.|..
T Consensus 311 egV~LqYS~dgGitW~~l~~~~~ 333 (387)
T 2ddu_A 311 EGLVVQYSNDNGILWHLLRELDF 333 (387)
T ss_dssp GSEEEEEESSTTSSCEEEEEECT
T ss_pred CcEEEEEEeCCCceEEEeEEecc
Confidence 55999999999999999887743
No 107
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=38.18 E-value=13 Score=25.16 Aligned_cols=25 Identities=28% Similarity=0.663 Sum_probs=18.3
Q ss_pred CCcc-CCCCceeeeCCCCCCCCCCcc
Q psy6778 210 RCIK-SPQGELVCECRHNTAGKDCEK 234 (314)
Q Consensus 210 ~C~~-~~~g~~~C~C~~nT~G~~Ce~ 234 (314)
.|.. ...+...|.|..+++|.+||.
T Consensus 20 ~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 20 RCRFVVAEQTPSCVCDEGYIGARCER 45 (50)
T ss_dssp CEEEETTTTEEEECCCTTEETTTTCE
T ss_pred EEEeEcCCCCeEEECCCCcccCCCCe
Confidence 5642 223456899999999999985
No 108
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=38.04 E-value=14 Score=32.59 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy6778 286 AGKDCEKCKPFFSDRPW 302 (314)
Q Consensus 286 ~G~~Ce~C~~Gyy~~p~ 302 (314)
....|+.|.+|+|.+..
T Consensus 146 ~Dt~C~~C~~GtFs~~~ 162 (216)
T 3me4_A 146 KDTVCTPCLLGFFSDVF 162 (216)
T ss_dssp SCCCEEECCTTEECCSC
T ss_pred CCCccccCCCceecCCC
Confidence 34678889999998764
No 109
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=37.36 E-value=31 Score=31.03 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=17.3
Q ss_pred CCCccCCCCceeeeCCCCCCCCCCc
Q psy6778 209 SRCIKSPQGELVCECRHNTAGKDCE 233 (314)
Q Consensus 209 ~~C~~~~~g~~~C~C~~nT~G~~Ce 233 (314)
..|... .+...|.|..+++|.+||
T Consensus 17 g~C~~~-~~~~~C~C~~g~~g~~C~ 40 (317)
T 3h5c_B 17 GSCQDS-IWGYTCTCSPGYEGSNCE 40 (317)
T ss_dssp CCCCCC-SSSCCCCCSSSCCSSSSC
T ss_pred CEeECC-CCCeEEECCCCCcCCccc
Confidence 457543 244689999999998886
No 110
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=36.56 E-value=16 Score=30.89 Aligned_cols=27 Identities=22% Similarity=0.688 Sum_probs=18.0
Q ss_pred CCCCCccCCCCCCCCCCCCCcccCCCCccCCccc
Q psy6778 228 AGKDCEKCKPFFSDRPWGRATVYDANECKGGRCK 261 (314)
Q Consensus 228 ~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~ 261 (314)
....|+.|.+|.|..-|. ....|+ +|.
T Consensus 37 ~~t~C~~C~~gty~~~~n-----~~~~C~--~C~ 63 (171)
T 3urf_Z 37 WKTVCAPCPDHYYTDSWH-----TSDECL--YCS 63 (171)
T ss_dssp SCCEEEECCTTEECCSCB-----CCSSCE--ECC
T ss_pred CCCccccCCCCcEecCCC-----CCCccc--cCc
Confidence 355788888888866552 235677 775
No 111
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=35.77 E-value=34 Score=24.68 Aligned_cols=22 Identities=36% Similarity=1.058 Sum_probs=10.8
Q ss_pred CCccCCCCceeeeCCCCCC--CCCC
Q psy6778 210 RCIKSPQGELVCECRHNTA--GKDC 232 (314)
Q Consensus 210 ~C~~~~~g~~~C~C~~nT~--G~~C 232 (314)
.|... .+...|.|+.+++ |..|
T Consensus 18 ~C~n~-~g~y~C~C~~Gy~~~g~~C 41 (82)
T 1emn_A 18 QCINT-DGSYRCECPFGYILAGNEC 41 (82)
T ss_dssp EECCC-SSCCCEECCTTEEEETTEE
T ss_pred EEEec-CCCEEEECCCCeECCCCcc
Confidence 45432 2334566666554 5444
No 112
>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A*
Probab=34.69 E-value=1.1e+02 Score=27.23 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=28.9
Q ss_pred ecCc--eeEEEEEEeeeccCC-CCCCceEEEeecCCCCCcccce
Q psy6778 123 SLGK--KFELTYISLSFCPKS-IKPDSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 123 ~l~~--~f~~~~v~l~f~~~s-~rP~~~~iekS~D~g~tw~p~~ 163 (314)
||++ ...|+-|.++..+++ ..-.+..|+-|.| |.+|..|+
T Consensus 63 DLg~~~~~~VtgV~tQG~~~~~~~VtsY~l~yS~d-g~~W~~y~ 105 (254)
T 2wn3_A 63 VAGCEVPRTFMCVALQGRGDADQWVTSYKIRYSLD-NVSWFEYR 105 (254)
T ss_dssp EEEEEEEEEEEEEEEECCSSSSCEEEEEEEEEESS-SSSCEEGG
T ss_pred EcCCCeEEEEEEEEEeCCCCCCCceEEEEEEEECC-CCcEEEec
Confidence 9999 999999999976211 1123456777887 88998764
No 113
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=34.44 E-value=17 Score=30.82 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q psy6778 286 AGKDCEKCKPFFSDRPWGR 304 (314)
Q Consensus 286 ~G~~Ce~C~~Gyy~~p~~~ 304 (314)
....|+.|.+|||.+-...
T Consensus 119 ~Dt~C~~C~~GtFs~~~s~ 137 (176)
T 3k51_B 119 QNTQCQPCPPGTFSASSSS 137 (176)
T ss_dssp SCCEEEECCTTEECCSCSS
T ss_pred CCCccccCCCCcccCCCCC
Confidence 3457888999999876543
No 114
>2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A
Probab=33.17 E-value=29 Score=32.70 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=18.1
Q ss_pred CCCceEEEeecCCCCCccccee
Q psy6778 143 KPDSLAIYKSQDFGKSWQPLQF 164 (314)
Q Consensus 143 rP~~~~iekS~D~g~tw~p~~y 164 (314)
....+.|+||.|.|+||+..+.
T Consensus 53 ~~~~~~v~rS~DgG~TW~~~~~ 74 (367)
T 2ydt_A 53 PNVWFPIVKSKDGGKTWKEISK 74 (367)
T ss_dssp SCCCEEEEEESSTTSSCEEEEE
T ss_pred CCeEEEEEEECCCCcCcCcCcc
Confidence 3456789999999999998654
No 115
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=32.65 E-value=13 Score=38.11 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=13.7
Q ss_pred CCccCCCCceeee-CCCCCCCCCCc
Q psy6778 210 RCIKSPQGELVCE-CRHNTAGKDCE 233 (314)
Q Consensus 210 ~C~~~~~g~~~C~-C~~nT~G~~Ce 233 (314)
.|... .+..+|. |+.+++|..|+
T Consensus 62 ~CvNt-~gsY~C~~C~~Gy~G~~c~ 85 (634)
T 1yo8_A 62 RCVNT-QPGFHCLPCPPRYRGNQPV 85 (634)
T ss_dssp CEEEC-SSSEEECCCCTTEEECCCE
T ss_pred ceeec-cCceecccCCCCcccCccc
Confidence 56532 2445676 77777777664
No 116
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=32.58 E-value=24 Score=29.74 Aligned_cols=63 Identities=19% Similarity=0.501 Sum_probs=31.0
Q ss_pred CCCCCccCCCCCCCCCCCCCcccCCCCccCCccc-CCC-CC----CCcccCCCCccccCCCCCCC--CCCCC------CC
Q psy6778 228 AGKDCEKCKPFFSDRPWGRATVYDANECKGGRCK-CNG-HA----SRCIKSPQGALVCECRHNTA--GKDCE------KC 293 (314)
Q Consensus 228 ~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~-Cn~-h~----~~C~~~~~~G~C~~C~~nt~--G~~Ce------~C 293 (314)
....|..|.+|.|..-|. ....|+ +|. |.. ++ ..|.. ...-+|. |+.++. ...|+ .|
T Consensus 35 ~~t~C~pC~~gty~~~~n-----~~~~C~--~C~~C~~~~g~~~~~~Ct~-t~d~~C~-C~~G~~~~~~~c~~C~~~~~C 105 (177)
T 3qd6_R 35 TETECLPCGESEFLDTWN-----RETHCH--QHKYCDPNLGLRVQQKGTS-ETDTICT-CEEGWHCTSEACESCVLHRSC 105 (177)
T ss_dssp CCCBCCBCCSSEECCSSB-----CCSSCE--ECCCCCGGGTEEEEECCCT-TSCCEEE-ECTTEEESSSSCCCEEECCCC
T ss_pred CCCccccCCCCceecCCC-----CCCcCC--CCCcCCCcCCeEEecCCcC-CCCceee-cCCCcEECCCCCccccccCcC
Confidence 456899999998876552 234677 664 542 11 12321 2345673 776553 23344 34
Q ss_pred CCCCCC
Q psy6778 294 KPFFSD 299 (314)
Q Consensus 294 ~~Gyy~ 299 (314)
.+|++-
T Consensus 106 ~pG~~v 111 (177)
T 3qd6_R 106 SPGFGV 111 (177)
T ss_dssp ------
T ss_pred CCCcEE
Confidence 567654
No 117
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=32.53 E-value=36 Score=34.81 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=13.7
Q ss_pred CcccCCCCccccCCCCCCCCCCCC
Q psy6778 268 RCIKSPQGALVCECRHNTAGKDCE 291 (314)
Q Consensus 268 ~C~~~~~~G~C~~C~~nt~G~~Ce 291 (314)
.|.-...+-+|..|..+++|..|+
T Consensus 62 ~CvNt~gsY~C~~C~~Gy~G~~c~ 85 (634)
T 1yo8_A 62 RCVNTQPGFHCLPCPPRYRGNQPV 85 (634)
T ss_dssp CEEECSSSEEECCCCTTEEECCCE
T ss_pred ceeeccCceecccCCCCcccCccc
Confidence 564333345673377777776654
No 118
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=31.34 E-value=11 Score=30.84 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=20.7
Q ss_pred CCCCCccCCCCCCCCCCCCCcccCCCCccCCccc-CCC
Q psy6778 228 AGKDCEKCKPFFSDRPWGRATVYDANECKGGRCK-CNG 264 (314)
Q Consensus 228 ~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~-Cn~ 264 (314)
....|+.|.+|+|-.-|. ....|. +|. |.+
T Consensus 34 ~~t~C~pC~~gty~~~~n-----~~~~C~--~C~~C~~ 64 (142)
T 2uwi_A 34 SDTICGHCPSDTFTSIYN-----RSPWCH--SCRGPCG 64 (142)
T ss_dssp CCCEEEECCTTEECCSSB-----CCSSCE--ECCCCCC
T ss_pred CCCccCcCCCCCCcccCC-----CCCccC--CCcCccc
Confidence 467899999999976653 234687 765 543
No 119
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=31.28 E-value=23 Score=24.04 Aligned_cols=18 Identities=28% Similarity=0.756 Sum_probs=15.2
Q ss_pred CceeeeCCCCCCCCCCcc
Q psy6778 217 GELVCECRHNTAGKDCEK 234 (314)
Q Consensus 217 g~~~C~C~~nT~G~~Ce~ 234 (314)
+...|.|..+++|.+||.
T Consensus 28 ~~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 28 DKPACVCHSGYVGARCEH 45 (50)
T ss_pred CCeEEECCCCCcccCCCc
Confidence 346899999999999975
No 120
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=30.80 E-value=20 Score=33.47 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy6778 286 AGKDCEKCKPFFSDRPW 302 (314)
Q Consensus 286 ~G~~Ce~C~~Gyy~~p~ 302 (314)
....|..|.+|||.+-.
T Consensus 123 sDTvC~~Cp~GTFSd~~ 139 (313)
T 3u3p_A 123 EDVRCKQCARGTFSDVP 139 (313)
T ss_dssp SCCEEEECCTTEECCSC
T ss_pred CCCccccCCCCeecCCC
Confidence 34578888888888754
No 121
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=30.71 E-value=19 Score=35.68 Aligned_cols=23 Identities=26% Similarity=0.732 Sum_probs=15.6
Q ss_pred ee-eCCCCCCCCCC-ccCCCCCCCC
Q psy6778 220 VC-ECRHNTAGKDC-EKCKPFFSDR 242 (314)
Q Consensus 220 ~C-~C~~nT~G~~C-e~C~pgy~~~ 242 (314)
.| .|++...+..| +.|.+|||.+
T Consensus 223 ~C~~C~~~~~~~~Cv~~Cp~g~y~~ 247 (501)
T 1mox_A 223 DCLVCRKFRDEATCKDTCPPLMLYN 247 (501)
T ss_dssp TEEEESSEEETTEEESSCCCSEEEE
T ss_pred ccccccccCCCCcccccCCCCeeec
Confidence 57 67776666677 5677777644
No 122
>3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A*
Probab=27.07 E-value=43 Score=31.31 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=18.1
Q ss_pred CCceEEEeecCCCCCcccceee
Q psy6778 144 PDSLAIYKSQDFGKSWQPLQFY 165 (314)
Q Consensus 144 P~~~~iekS~D~g~tw~p~~yy 165 (314)
...+.|+||.|.|+||+..+..
T Consensus 49 ~~~~~v~rS~DgG~TW~~~~~v 70 (355)
T 3a72_A 49 AVYFPIYRSKDHGKTWNEISRV 70 (355)
T ss_dssp CCCEEEEEESSTTSCCEEEEEE
T ss_pred CceEEEEEEcCCCcCcCCCccc
Confidence 3557899999999999987654
No 123
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=26.10 E-value=19 Score=29.31 Aligned_cols=19 Identities=37% Similarity=0.884 Sum_probs=14.9
Q ss_pred ceeeeCCCCCC-CCCCccCC
Q psy6778 218 ELVCECRHNTA-GKDCEKCK 236 (314)
Q Consensus 218 ~~~C~C~~nT~-G~~Ce~C~ 236 (314)
...|.|+.++. |..|+.|.
T Consensus 74 ~~~C~C~~G~~~~~~C~~C~ 93 (162)
T 1uzk_A 74 KASCCCSLGKAWGTPCEMCP 93 (162)
T ss_dssp HHHHHTTTCCEETTTTEECC
T ss_pred CceeeCCCCCCcCCCcccCC
Confidence 35788998887 88888765
No 124
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=25.10 E-value=13 Score=30.25 Aligned_cols=34 Identities=26% Similarity=0.691 Sum_probs=21.9
Q ss_pred eCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCccc-CC
Q psy6778 222 ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCK-CN 263 (314)
Q Consensus 222 ~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~-Cn 263 (314)
.|.. +....|+.|.+|+|..-|. ....|+ +|. |.
T Consensus 30 ~C~~-~~~t~C~pC~~gtys~~~n-----~~~~C~--~C~~C~ 64 (134)
T 4fhq_A 30 ACGE-LTGTVCEPCPPGTYIAHLN-----GLSKCL--QCQMCD 64 (134)
T ss_dssp CCC---CCCEEEECCTTEECCSCB-----CCSSCE--ECCCCC
T ss_pred cCCC-CCCCcccCCCCCCEecCCC-----CCCcCc--CCCCCC
Confidence 3554 3457899999999976652 235677 665 54
No 125
>2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A
Probab=23.42 E-value=34 Score=32.25 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=17.6
Q ss_pred CCceEEEeecCCCCCccccee
Q psy6778 144 PDSLAIYKSQDFGKSWQPLQF 164 (314)
Q Consensus 144 P~~~~iekS~D~g~tw~p~~y 164 (314)
...+.++||.|.|+||++..-
T Consensus 118 ~~~i~v~~S~D~G~TW~~~~~ 138 (367)
T 2ydt_A 118 ETLIEVYASRDKGYTWEFVSH 138 (367)
T ss_dssp CEEEEEEEESSSSSCCEEEEE
T ss_pred CCeEEEEEECCCCCCCcCCee
Confidence 356889999999999997654
No 126
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=23.32 E-value=96 Score=30.78 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=31.6
Q ss_pred CceeeEeecCceeEEEEEEeeeccCCCCC-----CceEEEeecCCCCCcccce
Q psy6778 116 DNVTLTLSLGKKFELTYISLSFCPKSIKP-----DSLAIYKSQDFGKSWQPLQ 163 (314)
Q Consensus 116 ~~vtitl~l~~~f~~~~v~l~f~~~s~rP-----~~~~iekS~D~g~tw~p~~ 163 (314)
.+--|+|||++.+.|+-|..|=.+....- .+..|+-|.| |.+|..|+
T Consensus 304 ~~qwlqVDl~~~~~it~v~tQG~~~~~~~~~~~v~~y~v~~s~d-g~~w~~y~ 355 (577)
T 4gz9_A 304 YKEWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYRVDISSN-GEDWISLK 355 (577)
T ss_dssp TTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-SSSCEECB
T ss_pred CCeEEEEcCCCEEEEEEEEccCCCCCCCCcceeEEEEEEEEEcC-CCcEEEEe
Confidence 35679999999999999988732001111 1245666777 88998764
No 127
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=22.34 E-value=25 Score=29.33 Aligned_cols=63 Identities=21% Similarity=0.491 Sum_probs=30.5
Q ss_pred CCCCCccCCCCCCCCCCCCCcccCCCCccCCccc-CCCC-CC----CcccCCCCccccCCCCCCC----C-CCCC-----
Q psy6778 228 AGKDCEKCKPFFSDRPWGRATVYDANECKGGRCK-CNGH-AS----RCIKSPQGALVCECRHNTA----G-KDCE----- 291 (314)
Q Consensus 228 ~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~-Cn~h-~~----~C~~~~~~G~C~~C~~nt~----G-~~Ce----- 291 (314)
.+..|+.|.+|+|..-|. ....|+ +|. |... +. .|.. ...-+| .|+.++. + ..|+
T Consensus 33 ~~t~C~~Cp~GtY~~~~n-----~~~~C~--~C~~C~~~~g~~~~~~Ct~-t~~t~C-~C~~G~y~~~~~~~~C~~C~~~ 103 (167)
T 1jma_B 33 TGTVCEPCPPGTYIAHLN-----GLSKCL--QCQMCDPAMGLRASRNCSR-TENAVC-GCSPGHFCIVQDGDHCAACRAY 103 (167)
T ss_dssp SCCEEEECCTTEECSSCB-----CSSCCE--ECCCCCTTTTEEEEECCCS-SSCCEE-EECTTEEEEECC--CCSEEEEC
T ss_pred CCCcCCcCCCCccccccC-----cCcccc--CCcccccCCCeEEeccCCC-CCCCcc-cCCCCceecCCCCCcCccccCc
Confidence 556899999999876442 234687 773 5431 11 1221 123466 5776652 2 3455
Q ss_pred -CCCCCCCC
Q psy6778 292 -KCKPFFSD 299 (314)
Q Consensus 292 -~C~~Gyy~ 299 (314)
.|.+|+|-
T Consensus 104 t~C~~G~~~ 112 (167)
T 1jma_B 104 ATSSPGQRV 112 (167)
T ss_dssp CC-------
T ss_pred ccCCCCCEE
Confidence 34677765
No 128
>3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A*
Probab=22.31 E-value=38 Score=31.66 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=17.4
Q ss_pred CceEEEeecCCCCCcccceee
Q psy6778 145 DSLAIYKSQDFGKSWQPLQFY 165 (314)
Q Consensus 145 ~~~~iekS~D~g~tw~p~~yy 165 (314)
..+.++||.|.|+||++..-.
T Consensus 114 ~~~~v~~S~D~G~TW~~~~~i 134 (355)
T 3a72_A 114 TDIVLYASQDDGMTWDFVSHI 134 (355)
T ss_dssp EEEEEEEESSTTSCCEEEEEE
T ss_pred ceEEEEEECCCCccCccCccc
Confidence 467899999999999987643
No 129
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=21.76 E-value=29 Score=27.53 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=16.0
Q ss_pred CCCccCCCCceeeeCCCCCCCCCCc
Q psy6778 209 SRCIKSPQGELVCECRHNTAGKDCE 233 (314)
Q Consensus 209 ~~C~~~~~g~~~C~C~~nT~G~~Ce 233 (314)
..|... .+...|.|..+++|..++
T Consensus 59 ~~C~n~-~g~y~C~C~~Gy~g~~~~ 82 (143)
T 2bou_A 59 SDCWNT-EGSYDCVCSPGYEPVSGA 82 (143)
T ss_dssp EEEEEC-SSCEEEEECTTEEETTCC
T ss_pred CEEEcC-CCCeEeECCCCcccCcCc
Confidence 466543 345678888888887665
No 130
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=21.68 E-value=14 Score=36.81 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=15.9
Q ss_pred CccccCCCCCC----CCCCCCCCCCCCCCCCCCC
Q psy6778 275 GALVCECRHNT----AGKDCEKCKPFFSDRPWGR 304 (314)
Q Consensus 275 ~G~C~~C~~nt----~G~~Ce~C~~Gyy~~p~~~ 304 (314)
.+.|..|..|. .|..-=.|..|||+.+..+
T Consensus 292 ~~~C~~CP~~S~s~~~Gs~~C~C~ng~~ra~~d~ 325 (536)
T 3fl7_A 292 ESPCLECPEHTLPSPEGATSCECEEGFFRAPQDP 325 (536)
T ss_dssp SSCCEECCSSEECCCTTCSSCEECTTCBCCTTCC
T ss_pred CCccccCCCCCCCCCCCccEEEEeccccccCCCc
Confidence 45566665433 3444445666777655443
No 131
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=21.63 E-value=2.1e+02 Score=24.44 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=48.9
Q ss_pred CCCCceecccCCCCCceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeecc--------CCCCCCceEEEeec
Q psy6778 82 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCP--------KSIKPDSLAIYKSQ 153 (314)
Q Consensus 82 ~hp~~~~~D~~~~~~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~--------~s~rP~~~~iekS~ 153 (314)
+.||..|.+.+. ..+.||..... +-.|+|.|.+...++.|+|.--+ .+..|..+.+.-..
T Consensus 66 ~~~P~~~L~p~~-~pG~CW~f~g~-----------~g~l~I~Ls~~I~~~~VtieHi~~~~sp~~~~~SAPKdf~V~g~~ 133 (198)
T 4dxt_A 66 SQSPRVILQPDV-HPGNCWAFQGP-----------QGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFD 133 (198)
T ss_dssp CCCGGGGGSSCC-STTCSEEEETT-----------CEEEEEEEEEEEEEEEEEEECCCGGGSGGGCCTTSBCEEEEEEES
T ss_pred CCCchheEcCCC-CCcceeecCCC-----------cceeeeecCCeEEEEEEEEEcCchhcccccCcCCCCcEEEEEEEc
Confidence 456777766553 57889987532 45788999999999999887542 13567777777666
Q ss_pred CCC-CCcccceeeh
Q psy6778 154 DFG-KSWQPLQFYS 166 (314)
Q Consensus 154 D~g-~tw~p~~yya 166 (314)
+.. ..|..+.-|.
T Consensus 134 ~~~~~~~~~Lg~f~ 147 (198)
T 4dxt_A 134 EDLQQEGTLLGKFT 147 (198)
T ss_dssp SSSCCCCEEEEEEE
T ss_pred CCCCCCcEEEEEEE
Confidence 543 3466555443
No 132
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=20.89 E-value=29 Score=23.87 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=14.8
Q ss_pred ceeeeCCCCCCCCCCcc
Q psy6778 218 ELVCECRHNTAGKDCEK 234 (314)
Q Consensus 218 ~~~C~C~~nT~G~~Ce~ 234 (314)
...|.|..+++|.+||.
T Consensus 32 ~~~C~C~~Gf~G~~Ce~ 48 (58)
T 3ltf_D 32 VYSCECAIGFMGQRCEY 48 (58)
T ss_dssp EEEEEECTTEESSSSCE
T ss_pred CEEeECCCCCccCCCcc
Confidence 45799999999999985
No 133
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=20.87 E-value=24 Score=25.63 Aligned_cols=18 Identities=22% Similarity=0.933 Sum_probs=10.3
Q ss_pred CCccCCCCceeeeCCCCCC
Q psy6778 210 RCIKSPQGELVCECRHNTA 228 (314)
Q Consensus 210 ~C~~~~~g~~~C~C~~nT~ 228 (314)
.|... .+...|.|+.+++
T Consensus 17 ~C~n~-~g~y~C~C~~Gy~ 34 (86)
T 1lmj_A 17 QCVNT-PGDFECKCDEGYE 34 (86)
T ss_dssp CEEEE-TTEEEECCCSSEE
T ss_pred EEECC-CCCEEeeCCCCcC
Confidence 66532 3456677666655
No 134
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=20.54 E-value=20 Score=29.49 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=7.8
Q ss_pred CCCCccCCCCCCC
Q psy6778 229 GKDCEKCKPFFSD 241 (314)
Q Consensus 229 G~~Ce~C~pgy~~ 241 (314)
-..|+ |++|||-
T Consensus 76 d~~C~-C~~G~y~ 87 (161)
T 1sg1_X 76 DAVCR-CAYGYYQ 87 (161)
T ss_dssp CCEEE-ECTTEEE
T ss_pred Cceec-cCCCeEe
Confidence 34564 7888775
Done!