RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6778
(314 letters)
>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI).
N-terminal domain of laminins and laminin-related
protein such as Unc-6/ netrins.
Length = 238
Score = 217 bits (554), Expect = 4e-70
Identities = 86/173 (49%), Positives = 105/173 (60%), Gaps = 15/173 (8%)
Query: 32 GRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSG------ACHVCDAGSPRGRFPA 85
GRPR C P FVN AFG+EV S CG PERYC G C CDA +PR PA
Sbjct: 2 GRPRSCYPPFVNLAFGREVTATSTCGEPGPERYCKLVGHTEQGKKCDYCDARNPRRSHPA 61
Query: 86 EYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPD 145
E LTD NNP+N T W+SE LS P NV LTL LGK+F +TY+ L FC S +P
Sbjct: 62 ENLTDGNNPNNPTWWQSE------PLSNGPQNVNLTLDLGKEFHVTYVILKFC--SPRP- 112
Query: 146 SLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQ 198
SL I + DFGK+WQP Q++SS C++ +GR G I++GNE E +CT +
Sbjct: 113 SLWILERSDFGKTWQPWQYFSSDCRRTFGRPPRGPITKGNEDEVICTSEYSDI 165
>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI).
Length = 237
Score = 119 bits (301), Expect = 2e-32
Identities = 59/170 (34%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 37 CIPDFVNAAFGQEVKVNSVCGLESPERYCDTSG------ACHVCDAGSP--RGRFPAEYL 88
C P N A + + S CGL PE YC S C +CD+ SP R P +L
Sbjct: 1 CYPATGNLAINRALSATSTCGLHGPEPYCILSHLQPRDKKCFLCDSNSPNPRESHPISFL 60
Query: 89 TDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLA 148
TD NP + T W+SE T N + NVT+TL L +F TY+ + F K+ +P ++
Sbjct: 61 TDTFNPQDTTWWQSE--TMQNGVQY--PNVTITLDLEAEFHFTYVIIKF--KTFRPAAMI 114
Query: 149 IYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRG-NEQEALCTDRHKK 197
+S DFG W P Q+Y+ C+ Y I G E + +CT R+
Sbjct: 115 YERSSDFGT-WIPYQYYAYSCESTYPGIPRRPIRTGRAEDDVICTSRYSD 163
>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain;
laminins are the major noncollagenous components of
basement membranes that mediate cell adhesion, growth
migration, and differentiation; the laminin-type
epidermal growth factor-like module occurs in tandem
arrays; the domain contains 4 disulfide bonds (loops
a-d) the first three resemble epidermal growth factor
(EGF); the number of copies of this domain in the
different forms of laminins is highly variable ranging
from 3 up to 22 copies.
Length = 50
Score = 45.0 bits (107), Expect = 8e-07
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 259 RCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPW 302
C CNGH S + G CEC+ NT G+ C++C P + P
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44
Score = 44.7 bits (106), Expect = 9e-07
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 201 RCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPW 244
C CNGH S + G CEC+ NT G+ C++C P + P
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44
>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V). This
family is like pfam00008 but has 8 conserved cysteines
instead of six.
Length = 49
Score = 39.6 bits (93), Expect = 6e-05
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 202 CKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRP 243
C CN H S C C+ G+ C++CKP + P
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLP 42
Score = 39.6 bits (93), Expect = 6e-05
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 260 CKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRP 301
C CN H S C C+ G+ C++CKP + P
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLP 42
>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like
domai.
Length = 46
Score = 33.1 bits (76), Expect = 0.013
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 260 CKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWG 303
C C+ S CEC+ N G+ C++C P +
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGPP 44
Score = 33.1 bits (76), Expect = 0.014
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 202 CKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWG 245
C C+ S CEC+ N G+ C++C P +
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGPP 44
>gnl|CDD|237468 PRK13684, PRK13684, Ycf48-like protein; Provisional.
Length = 334
Score = 29.2 bits (66), Expect = 3.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 145 DSLAIYKSQDFGKSWQ 160
+ AIY++ D GK+W+
Sbjct: 150 NVGAIYRTTDGGKNWE 165
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 28.8 bits (65), Expect = 4.3
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 234 KCKPFFSDRPWGRAT 248
K KPFF DRP+GR T
Sbjct: 246 KLKPFF-DRPYGRVT 259
Score = 28.8 bits (65), Expect = 4.3
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 292 KCKPFFSDRPWGRAT 306
K KPFF DRP+GR T
Sbjct: 246 KLKPFF-DRPYGRVT 259
>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase. This family
includes a range of O-methyltransferases. These enzymes
utilise S-adenosyl methionine.
Length = 239
Score = 28.0 bits (63), Expect = 6.3
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 52 VNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAE 86
+ + + E D SG + D G G A
Sbjct: 84 HSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAA 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.451
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,722,801
Number of extensions: 1270904
Number of successful extensions: 915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 25
Length of query: 314
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 217
Effective length of database: 6,635,264
Effective search space: 1439852288
Effective search space used: 1439852288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)