RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6778
(314 letters)
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 212 bits (541), Expect = 1e-66
Identities = 116/309 (37%), Positives = 158/309 (51%), Gaps = 26/309 (8%)
Query: 25 SDPCY-ENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGA------CHVCDAG 77
D C E GRP+RC+P+FVNAAF V + CG PE YC +G CH+CDAG
Sbjct: 6 MDECADEGGRPQRCMPEFVNAAFNVTVVATNTCG-TPPEEYCVQTGVTGVTKSCHLCDAG 64
Query: 78 SPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSF 137
+ A +LTD NN ++ T W+S+ ++ + P+++ LTL LGK F++TY+ L F
Sbjct: 65 QQHLQHGAAFLTDYNNQADTTWWQSQ---TMLAGVQYPNSINLTLHLGKAFDITYVRLKF 121
Query: 138 CPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI-SRGNEQEALCTDRHK 196
+ +P+S AIYK W P Q+YS C+ Y + G I + G+EQ+ALCTD
Sbjct: 122 H--TSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFS 179
Query: 197 KQGGRCKCNGHASRCIKSPQGE------------LVCECRHNTAGKDCEKCKPFFSDRPW 244
N S P + R + + F +
Sbjct: 180 DISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNEPKVL 239
Query: 245 GRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGR 304
++ GGRCKCNGHAS C+K+ L+C C+HNT G DCEKC PFF+DRPW R
Sbjct: 240 KSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRR 299
Query: 305 ATVYDANEC 313
AT A+EC
Sbjct: 300 ATAESASEC 308
Score = 103 bits (257), Expect = 3e-25
Identities = 53/106 (50%), Positives = 64/106 (60%), Gaps = 9/106 (8%)
Query: 199 GGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGG 258
GGRCKCNGHAS C+K+ +L+C C+HNT G DCEKC PFF+DRPW RAT A+EC
Sbjct: 252 GGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECL-- 309
Query: 259 RCKCNGHASRCIKSPQGALV-------CECRHNTAGKDCEKCKPFF 297
C CNG + C P+ CR NT G CE+C+ F
Sbjct: 310 PCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENF 355
Score = 49.8 bits (118), Expect = 5e-07
Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 16/84 (19%)
Query: 191 CTDRHKKQGGRCKCNGHASRCIKSPQGELV-------CECRHNTAGKDCEKCKPFFSDRP 243
T + C CNG + C P+ CR NT G CE+C+ F
Sbjct: 300 ATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLG 359
Query: 244 WGRATVYDANECKGGRCKCNGHAS 267
+ C + H
Sbjct: 360 -------NTEACS--PAAAHHHHH 374
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 190 bits (483), Expect = 2e-58
Identities = 78/332 (23%), Positives = 118/332 (35%), Gaps = 45/332 (13%)
Query: 16 VCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKVN--SVCGLESPERYCDTSGA--- 70
+C + + P +E C P + +VKV + + PER+C
Sbjct: 4 ICKSWVTTDEGPTWEF---YACQPKVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLC 60
Query: 71 CHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFEL 130
+ CDA +P P + D T W+S + SP +TLS K EL
Sbjct: 61 SNECDASNPDLAHPPRLMFDKEEEGLATYWQSITWSRY----PSPLEANITLSWNKTVEL 116
Query: 131 TY-ISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV--ISRGNEQ 187
T + ++F +P + + KS D G++WQP QFY+ C + +G +A +S +
Sbjct: 117 TDDVVMTFE--YGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRARDMSSSSAH 174
Query: 188 EALCTDRHKKQGGRCKCNGHASRCIKSPQGEL-------------------------VCE 222
LCT+ + + G K + +
Sbjct: 175 RVLCTEEYSRWAGSKKEKHVRFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTD 234
Query: 223 CRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECR 282
R + + + GRCKCN HA+ C G+L CEC
Sbjct: 235 LRMRLLRPALGGTYVQRENLYKYFYAISNIEVI--GRCKCNLHANLCSMRE-GSLQCECE 291
Query: 283 HNTAGKDCEKCKPFFSDRPWGRATVYDANECK 314
HNT G DC KCK F R W +
Sbjct: 292 HNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGS 323
Score = 80.4 bits (197), Expect = 2e-17
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 194 RHKKQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVY--- 250
+ + GRCKCN HA+ C G L CEC HNT G DC KCK F R W +
Sbjct: 262 SNIEVIGRCKCNLHANLCSMRE-GSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLP 320
Query: 251 --DANECKGGRCKCNGHA 266
N C + H
Sbjct: 321 HGSPNACA--AAGSHHHH 336
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 176 bits (448), Expect = 2e-51
Identities = 76/327 (23%), Positives = 117/327 (35%), Gaps = 52/327 (15%)
Query: 25 SDPCY-ENGRPRRCIPDFVNAAFGQEVKV--NSVCGLESPERYCDTSGA-----CHVCDA 76
+P + C P + G+ K+ S CGL PE YC S C +CD+
Sbjct: 5 QEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDS 64
Query: 77 GSPRGRF-------PAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFE 129
P +T W+SE +NVT+ L L +F
Sbjct: 65 RDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSENG---------VENVTIQLDLEAEFH 115
Query: 130 LTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEA 189
T++ ++F + +P ++ I +S DFGK+W ++++ C+ + +TG + +
Sbjct: 116 FTHLIMTFK--TFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPMK--KVDDI 171
Query: 190 LCTDRHKKQG-------------GRCKCNGHASRCIKSP-QGELVCECRHNTAGKDCEKC 235
+C R+ K S I++ + +
Sbjct: 172 ICDSRYSDIEPSTEGEVIFRALDPAFKIEDPYSPRIQNLLKITNLRIKFVKLHTLGDNLL 231
Query: 236 KPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSP--------QGALVCECRHNTAG 287
R VYD G C C GHAS C C CRHNT G
Sbjct: 232 DSRMEIREKYYYAVYDMV--VRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKG 289
Query: 288 KDCEKCKPFFSDRPWGRATVYDANECK 314
+CE C F+ D PW A ++N CK
Sbjct: 290 LNCELCMDFYHDLPWRPAEGRNSNACK 316
Score = 57.0 bits (137), Expect = 2e-09
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 191 CTDRHKKQGGRCKCNGHASRCIKSP--------QGELVCE-CRHNTAGKDCEKCKPFFSD 241
R+ +C CN H+S C VC+ C+HNT G++CE+CKPF+
Sbjct: 307 AEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQ 366
Query: 242 RPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALV-------CECRHNTAGKDCEKCK 294
P + D N C+ C G + I C C+ + G+ C+ CK
Sbjct: 367 HP--ERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCK 424
Query: 295 PFFSDRPWG 303
F D
Sbjct: 425 EGFYDLSAE 433
Score = 50.8 bits (121), Expect = 2e-07
Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 167 SQCKKLYGRTATGVISRGNEQEALCTDRHKKQGGRCKCNGHASRCIKSPQGELVCECRHN 226
QCK Y + I N E D + G C+G+ + G+ C C+ +
Sbjct: 358 EQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGI-CDGYTDFSVGLIAGQ--CRCKLH 414
Query: 227 TAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGAL--VCECRHN 284
G+ C+ CK F D D CK C CN + +P + C C+
Sbjct: 415 VEGERCDVCKEGFYDLSAE-----DPYGCK--SCACNPLGTIPGGNPCDSETGYCYCKRL 467
Query: 285 TAGKDCEKCKPFF 297
G+ C++C P
Sbjct: 468 VTGQRCDQCLPQH 480
Score = 43.5 bits (102), Expect = 6e-05
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 201 RCKCNGHASRCIKSPQGEL--VCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGG 258
C CN + +P C C+ G+ C++C P WG + D + C+
Sbjct: 440 SCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQH----WGLSN--DLDGCR-- 491
Query: 259 RCKCNGHASRCIKSPQGALVCECRHNTAGKDCEK 292
C C+ + + + C C + G+ C +
Sbjct: 492 PCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 169 bits (428), Expect = 2e-49
Identities = 79/328 (24%), Positives = 119/328 (36%), Gaps = 45/328 (13%)
Query: 22 DLNSDPCY-ENGR---PRRCIPDFVNAAFGQEVKVN--SVCGLESPERYCDTSGA---CH 72
DL Y E G+ C P+ + +VK++ + + PE +C +
Sbjct: 31 DLCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNN 90
Query: 73 VCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELT- 131
CDA +P P E + D T W+S P V +TLS K ELT
Sbjct: 91 ECDASTPELAHPPELMFDFEGRHPSTFWQSA----TWKEYPKPLQVNITLSWSKTIELTD 146
Query: 132 YISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV--ISRGNEQEA 189
I ++F S +PD + + KS D+G++WQP Q+Y++ C + V +S+ E
Sbjct: 147 NIVITFE--SGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEI 204
Query: 190 LCTDRHKKQGGRC---------------------KCNGHASRCIKSPQGELVCECRHNTA 228
+CT+ + + + +
Sbjct: 205 ICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRI 264
Query: 229 GKDCEKCKPFFSDR---PWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNT 285
F D + D GRCKCN HA+ C+ L CEC HNT
Sbjct: 265 RLLRPAVGEIFVDELHLARYFYAISDIKVR--GRCKCNLHATVCVYDNSK-LTCECEHNT 321
Query: 286 AGKDCEKCKPFFSDRPWGRATVYDANEC 313
G DC KCK + RPW + +
Sbjct: 322 TGPDCGKCKKNYQGRPWSPGSYLPIPKG 349
Score = 85.7 bits (211), Expect = 5e-19
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 199 GGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGG 258
GRCKCN HA+ C+ +L CEC HNT G DC KCK + RPW + +
Sbjct: 294 RGRCKCNLHATVCVYDN-SKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAAN 352
Query: 259 RCK---CNGHASRCIKSP---------QGALVCECRHNTAGKDCEKCK 294
C + + C + C C G CEK +
Sbjct: 353 ACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLR 400
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 163 bits (413), Expect = 1e-47
Identities = 72/336 (21%), Positives = 115/336 (34%), Gaps = 71/336 (21%)
Query: 32 GRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGA--------------------- 70
G P + N A G + ++ CG E+P R
Sbjct: 6 GDGFSLHPPYFNLAEGARITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQ 65
Query: 71 ---CHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKK 127
C +C A + P D W+S S + V +TL LG+
Sbjct: 66 GQYCDICTAANSNKAHPVSNAIDGTE----RWWQSP----PLSRGLEYNEVNVTLDLGQV 117
Query: 128 FELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGR-TATGVISRGNE 186
F + Y+ + F S +PD + +S DFG ++QP QF++S + R + +
Sbjct: 118 FHVAYVLIKFA-NSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLERITQD 176
Query: 187 QEALCTDRHKKQGGRCKCNGHASRCIKSP-------------------------QGELVC 221
+ +CT + + S P + +
Sbjct: 177 DDVICTTEYSRIVPLENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLL 236
Query: 222 ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSP---QGALV 278
A +D + ++ + D + RC C+GHA C L
Sbjct: 237 GHLMGKALRDPTVTRRYYYS-------IKDISIGG--RCVCHGHADVCDAKDPLDPFRLQ 287
Query: 279 CECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECK 314
C C+HNT G C++C P F+ +PW AT ANEC+
Sbjct: 288 CACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQ 323
Score = 91.9 bits (227), Expect = 4e-21
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 23/133 (17%)
Query: 201 RCKCNGHASRCIKSP---QGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKG 257
RC C+GHA C L C C+HNT G C++C P F+ +PW AT ANEC+
Sbjct: 265 RCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQ- 323
Query: 258 GRCKCNGHASRCIKSPQ----------------GALVCECRHNTAGKDCEKCKPFFSDRP 301
C C+GHA C P+ G + +C+H+T G +CE+C P F P
Sbjct: 324 -SCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAP 382
Query: 302 WGRATVYDANECK 314
+ + C+
Sbjct: 383 D--QPLDSPHVCR 393
Score = 44.9 bits (105), Expect = 2e-05
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 20/91 (21%)
Query: 191 CTDRHKKQGGRCKCNGHASRCIKSPQGELV----------------CECRHNTAGKDCEK 234
T + C C+GHA C P+ + +C+H+T G +CE+
Sbjct: 314 ATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCER 373
Query: 235 CKPFFSDRPWGRATVYDANECKGGRCKCNGH 265
C P F P + + C+ + H
Sbjct: 374 CLPGFFRAPD--QPLDSPHVCR--PAAAHHH 400
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 75.6 bits (186), Expect = 8e-17
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 202 CKCNGHASRCIKSPQGELVC-ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRC 260
C C G +S I E+VC C TAGK CE C + P G C+ C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNG--PVRLCR--PC 56
Query: 261 KCNGHASRCIKS---PQGALVCECRHNTAGKDCEKCKPFF 297
+CN + +C +NTAG C++CK F
Sbjct: 57 QCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGF 96
Score = 50.6 bits (121), Expect = 6e-08
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 201 RCKCNGHASRCIKS---PQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYD-ANECK 256
C+CN + +C +NTAG C++CK F +G + A++CK
Sbjct: 55 PCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGF----FGNPLAPNPADKCK 110
Query: 257 GGRCKCNGHASRCIKSP--QGALVCECRHNTAGKDCEKCKP 295
C CN + + +S C+C + +G+DC C P
Sbjct: 111 --ACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDP 149
Score = 49.0 bits (117), Expect = 2e-07
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 260 CKCNGHASRCIKSPQGALVC-ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECK 314
C C G +S I +VC C TAGK CE C + P G C+
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNG--PVRLCR 54
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module,
sugar-binding protein, pectin, plant cell WALL,
galacturonic acid; 1.35A {Yersinia enterocolitica} PDB:
2jd9_A
Length = 145
Score = 35.9 bits (83), Expect = 0.006
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 76 AGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISL 135
+ D + T W A+ + L L K+ + I +
Sbjct: 17 GYDSEKGHVPANIAD-GDVK--TRW------------AASGESWVQLELDKEQSIENILI 61
Query: 136 SFCPKSIKPDSLAIYKSQDFGKSWQPL 162
+ + +I+ S D GK+WQPL
Sbjct: 62 VPFKPTERKLKFSIFYSND-GKNWQPL 87
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Length = 763
Score = 30.9 bits (69), Expect = 0.69
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 148 AIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI 181
A S D GK+++ + GR +
Sbjct: 105 AFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERL 138
Score = 30.1 bits (67), Expect = 1.2
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 148 AIYKSQDFGKSWQPLQFYSSQ 168
+Y S D G W L +
Sbjct: 709 GLYMSTDNGGLWTRLNDDAHN 729
Score = 29.0 bits (64), Expect = 2.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 149 IYKSQDFGKSWQPL 162
IY S DFG ++ L
Sbjct: 657 IYHSTDFGNTFTAL 670
Score = 29.0 bits (64), Expect = 2.6
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 148 AIYKSQDFGKSWQPL 162
++ + D G +W +
Sbjct: 205 GLWVTWDGGANWSQV 219
Score = 28.6 bits (63), Expect = 3.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 149 IYKSQDFGKSWQPL 162
Y S D+GK+W
Sbjct: 570 PYTSSDYGKTWTAP 583
Score = 28.2 bits (62), Expect = 3.9
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 149 IYKSQDFGKSWQPL-QFYSSQCKKLYGRTATGVIS 182
Y+ W+P+ F + G G S
Sbjct: 45 TYRWNAAKWEWEPITDFIINNALAGNGANLLGTES 79
Score = 28.2 bits (62), Expect = 4.7
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 149 IYKSQDFGKSWQPLQFYSS 167
+++S D ++W +
Sbjct: 157 LWRSTDRAQTWSRMNQLPD 175
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 29.2 bits (66), Expect = 0.89
Identities = 9/72 (12%), Positives = 15/72 (20%), Gaps = 16/72 (22%)
Query: 221 CECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCE 280
C C G++CE ++ + G C C
Sbjct: 70 CFCLPAFEGRNCET----------------HKDDQLICVNENGGCEQYCSDHTGTKRSCR 113
Query: 281 CRHNTAGKDCEK 292
C +
Sbjct: 114 CHEGYSLLADGV 125
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase;
beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1
b.69.13.1 PDB: 2ebs_A*
Length = 789
Score = 29.7 bits (66), Expect = 1.4
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 148 AIYKSQDFGKSWQPL 162
+Y + D G SW+P+
Sbjct: 193 GMYVTHDGGVSWEPV 207
Score = 29.3 bits (65), Expect = 1.7
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 148 AIYKSQDFGKSWQPL 162
+Y+S D G +W +
Sbjct: 711 GLYRSDDNGSTWTRV 725
Score = 29.3 bits (65), Expect = 1.8
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 148 AIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI 181
A Y S+D G+S+ + GR +
Sbjct: 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERL 126
Score = 28.6 bits (63), Expect = 3.1
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 149 IYKSQDFGKSWQPL 162
++ S DFG S+ +
Sbjct: 657 LFHSTDFGASFTRV 670
Score = 28.6 bits (63), Expect = 3.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 149 IYKSQDFGKSWQPLQFYSSQ 168
IY S D G +W+ + SS
Sbjct: 326 IYLSTDAGATWKDVTQLSSP 345
Score = 28.6 bits (63), Expect = 3.6
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 149 IYKSQDFGKSWQP 161
+ S D+GK+W
Sbjct: 571 PWYSHDYGKTWSV 583
Score = 28.2 bits (62), Expect = 4.3
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 149 IYKSQDFGKSWQPL 162
+ S D GKS+
Sbjct: 613 FFVSTDGGKSYAAK 626
Score = 27.8 bits (61), Expect = 5.1
Identities = 3/31 (9%), Positives = 11/31 (35%)
Query: 132 YISLSFCPKSIKPDSLAIYKSQDFGKSWQPL 162
Y++ + P +++ +W +
Sbjct: 245 YVTYADYPGPWGVTFGEVWRQNRTSGAWDDI 275
Score = 27.8 bits (61), Expect = 5.2
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 149 IYKSQDFGKSWQPL 162
Y+ W PL
Sbjct: 39 AYRWDAGTSKWIPL 52
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold,
structural genomics, joint CEN structural genomics,
JCSG; 2.20A {Ralstonia eutropha}
Length = 394
Score = 29.4 bits (66), Expect = 1.7
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 149 IYKSQDFGKSWQPL 162
+++S D G +W
Sbjct: 83 VFRSDDGGGNWTEA 96
Score = 29.0 bits (65), Expect = 1.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 148 AIYKSQDFGKSWQPL 162
A+Y ++D G+SWQ
Sbjct: 314 AVYVTRDAGESWQRQ 328
Score = 28.3 bits (63), Expect = 3.3
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 148 AIYKSQDFGKSWQPL 162
+++S D G SW+P+
Sbjct: 139 GLFRSTDHGASWEPV 153
Score = 28.3 bits (63), Expect = 3.8
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 149 IYKSQDFGKSWQPL 162
+++S D G W+PL
Sbjct: 201 VFESTDAGTDWKPL 214
Score = 28.3 bits (63), Expect = 3.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 149 IYKSQDFGKSWQPL 162
I+ S D G+ WQ +
Sbjct: 365 IWASADEGEHWQCI 378
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase,
family GH74; HET: GLC BGC GAL; 1.95A {Clostridium
thermocellum} PDB: 2cn2_A*
Length = 737
Score = 29.2 bits (65), Expect = 2.0
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 149 IYKSQDFGKSWQPLQ 163
++S D GK+W +
Sbjct: 680 FFRSDDAGKTWVRIN 694
Score = 29.2 bits (65), Expect = 2.0
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 148 AIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGN 185
+IY+S D G +W+ + Q K L + S G
Sbjct: 223 SIYRSTDGGVTWKAV---PGQPKGLLPHHGV-LASNGM 256
Score = 29.2 bits (65), Expect = 2.1
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 148 AIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI 181
AI +S D G++W+ + GR+ +
Sbjct: 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERL 137
Score = 28.8 bits (64), Expect = 3.0
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 149 IYKSQDFGKSWQPLQFYSS 167
+++S D+G +W ++ + +
Sbjct: 157 LWRSTDYGVTWSKVESFPN 175
Score = 28.0 bits (62), Expect = 4.3
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 149 IYKSQDFGKSWQPL 162
Y+ ++W PL
Sbjct: 47 AYRWDPSTETWIPL 60
Score = 28.0 bits (62), Expect = 5.0
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 149 IYKSQDFGKSWQPL 162
I++S D G +W+ +
Sbjct: 330 IFRSTDGGATWKNI 343
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 2.0
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 128 FELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSS 167
F + ++ F + I+ DS A S + Q L+FY
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller,
assembly FAC; 1.50A {Thermosynechococcus elongatus}
Length = 327
Score = 28.8 bits (64), Expect = 2.3
Identities = 4/14 (28%), Positives = 11/14 (78%)
Query: 149 IYKSQDFGKSWQPL 162
+ +++D G++W+P
Sbjct: 58 LMETRDGGQTWEPR 71
>2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A
{Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A
Length = 367
Score = 27.9 bits (61), Expect = 4.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 147 LAIYKSQDFGKSWQPLQ 163
I KS+D GK+W+ +
Sbjct: 57 FPIVKSKDGGKTWKEIS 73
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 27.8 bits (61), Expect = 5.0
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 251 DANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPF 296
C R +C+ HA C G C C N G + +C
Sbjct: 4 AQQTCANNRHQCSVHAE-CRDYATG-FCCRCVANYTG-NGRQCVAE 46
>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller,
Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide
complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo
sapiens}
Length = 685
Score = 27.3 bits (59), Expect = 7.8
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 150 YKSQDFGKSWQPLQFYSSQCK 170
+ S++FG W+ + K
Sbjct: 163 WVSKNFGGKWEEIHKAVCLAK 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.451
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,642,164
Number of extensions: 266561
Number of successful extensions: 984
Number of sequences better than 10.0: 1
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 188
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)