RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6778
         (314 letters)



>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 55

 Score = 43.0 bits (101), Expect = 9e-07
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 202 CKCNGHASRCIKSPQGELVC-ECRHNTAGKDCEKCKPFFSDRPWG 245
           C C G +S  I     E+VC  C   TAGK CE C   +   P G
Sbjct: 1   CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLG 45



 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 260 CKCNGHASRCIKSPQGALVC-ECRHNTAGKDCEKCKPFFSDRPWG 303
           C C G +S  I      +VC  C   TAGK CE C   +   P G
Sbjct: 1   CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLG 45


>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 56

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 260 CKCNGHASRCIKS---PQGALVCECRHNTAGKDCEKCKPFF 297
           C+CN +                 +C +NTAG  C++CK  F
Sbjct: 1   CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGF 41



 Score = 33.3 bits (76), Expect = 0.003
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 202 CKCNGHASRCIKS---PQGELVCECRHNTAGKDCEKCKPFF 239
           C+CN +                 +C +NTAG  C++CK  F
Sbjct: 1   CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGF 41


>d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase,
           C-terminal domain {North american leech (Macrobdella
           decora) [TaxId: 6405]}
          Length = 483

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 147 LAIYKSQDFGKSWQPLQ 163
           +A  KS D G +W    
Sbjct: 49  IAFAKSTDGGNTWSEPT 65


>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 51

 Score = 25.2 bits (55), Expect = 1.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 221 CECRHNTAGKDCEKCKPFF 239
           C+C  + +G+DC  C P +
Sbjct: 22  CQCLPHVSGRDCGTCDPGY 40



 Score = 25.2 bits (55), Expect = 1.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 279 CECRHNTAGKDCEKCKPFF 297
           C+C  + +G+DC  C P +
Sbjct: 22  CQCLPHVSGRDCGTCDPGY 40


>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific
           cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId:
           203496]}
          Length = 356

 Score = 27.5 bits (60), Expect = 2.1
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 148 AIYKSQDFGKSWQPLQFYSSQ 168
            +Y+S D G +W  +      
Sbjct: 281 GLYRSDDNGSTWTRVNDQEHN 301


>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific
           cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId:
           203496]}
          Length = 427

 Score = 26.7 bits (57), Expect = 3.8
 Identities = 5/18 (27%), Positives = 6/18 (33%)

Query: 145 DSLAIYKSQDFGKSWQPL 162
           D    Y+       W PL
Sbjct: 32  DIGGAYRWDAGTSKWIPL 49


>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain
           {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 127

 Score = 25.7 bits (56), Expect = 4.4
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 108 VNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSS 167
           V S   S ++V   +  GK   +   ++S   + I+     +  S D GK+W        
Sbjct: 4   VQSAICSVEDVQ-MVKPGK-VSIKGYAVSGGGRGIE----RVDISLDGGKNWVEASRTQE 57

Query: 168 QCKKLYGRTATG 179
             K+     ++ 
Sbjct: 58  PGKQYISEHSSS 69


>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
           pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
          Length = 370

 Score = 25.9 bits (55), Expect = 7.1
 Identities = 10/61 (16%), Positives = 21/61 (34%)

Query: 248 TVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATV 307
           TV +A+E  GGR +   +      +  G +    +H    +   K     ++        
Sbjct: 57  TVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNA 116

Query: 308 Y 308
           +
Sbjct: 117 W 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.451 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,193,638
Number of extensions: 58609
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 71
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)