BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6779
(144 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|156545324|ref|XP_001605709.1| PREDICTED: RNA methyltransferase-like protein 1-like [Nasonia
vitripennis]
Length = 458
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 102/144 (70%), Gaps = 3/144 (2%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ-HRV 59
M+ ++S+KQR+K ++LEG R + DA+KA + + +FFS+W+ +K L + +V
Sbjct: 143 MMSLRSKKQRKKDELILLEGVRFIEDAIKAGIVPQYIFFSRWEDIKHLDFSNTGTKLFKV 202
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
Y+NIQLWS L T PG++GIF+ P P+ + +SLP+ I+CDN+RDPGNMGSILR A
Sbjct: 203 TYRNIQLWSTLTTSPGVMGIFKRP-EPL-KVKKSSLPITIICDNVRDPGNMGSILRAAAG 260
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
VG +VV ++GCVD +D KV+R+A
Sbjct: 261 VGVEKVVLTKGCVDFWDTKVLRSA 284
>gi|383863316|ref|XP_003707127.1| PREDICTED: RNA methyltransferase-like protein 1-like [Megachile
rotundata]
Length = 422
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 102/144 (70%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M +K+RK+REK ++LEG R++ DALKA L K VFF+ + +K L LP++V ++V
Sbjct: 109 MSQIKTRKRREKNNEVVLEGHRLIKDALKAGLVPKAVFFNDFSEVKSLNLPDEVKLYKVP 168
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
YK++QLWS L T PG++GIF+ P D ++PL I+CDNIR+PGN+GSI+R V
Sbjct: 169 YKSLQLWSALTTSPGLLGIFDTPDVSNNPSDNHTIPLTIICDNIREPGNLGSIMRAAVGV 228
Query: 121 GARQVVCSRGCVDIYDNKVIRAAA 144
G +++ +GCVD++D KV+R+AA
Sbjct: 229 GCEKLILLKGCVDLWDPKVLRSAA 252
>gi|332030022|gb|EGI69847.1| RNA methyltransferase-like protein 1 [Acromyrmex echinatior]
Length = 438
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 66/145 (45%), Positives = 110/145 (75%), Gaps = 4/145 (2%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M+ +K++K+REK ++LEG R++ DA++A + K++FFS+ + L LP++V +++
Sbjct: 113 MIDIKTKKKREKNRQMLLEGFRLIEDAIQAGIVAKVIFFSRLSDVLPLSLPKEVKLYKIP 172
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA--SLPLNIVCDNIRDPGNMGSILRVCA 118
Y+ IQLWS+L+T PGIIGIFE+P + + +PA ++PL I+CDNIR+PGN+G+I+R A
Sbjct: 173 YRTIQLWSNLITSPGIIGIFEIP--DVDTKEPAENAIPLTIICDNIREPGNLGTIVRAAA 230
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
AVG +++ +GCVD+++ KV+R+A
Sbjct: 231 AVGCEKLLLMKGCVDLWEPKVLRSA 255
>gi|328779499|ref|XP_001120040.2| PREDICTED: RNA methyltransferase-like protein 1-like [Apis
mellifera]
Length = 417
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 101/144 (70%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M +KSRK+REK ++LEG+R++ DALK+ + ++ ++ I+ L LPE+V ++V
Sbjct: 107 MTKLKSRKKREKDNEIILEGQRLITDALKSGVIPSVIIYNDPSIIATLKLPEEVKLYKVP 166
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
YK IQLWS L T PG++GIF+ P +LPL I+CDNIRDPGN+GSI+RV AV
Sbjct: 167 YKTIQLWSALTTSPGLLGIFKTPDVNNNIPVNNALPLTIICDNIRDPGNLGSIMRVATAV 226
Query: 121 GARQVVCSRGCVDIYDNKVIRAAA 144
G +++ +GCVD++D KV+R+AA
Sbjct: 227 GCEKLILMKGCVDLWDPKVLRSAA 250
>gi|322797134|gb|EFZ19388.1| hypothetical protein SINV_11142 [Solenopsis invicta]
Length = 430
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 109/146 (74%), Gaps = 4/146 (2%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M+ +K++K+REK ++LEG R++ DA++A + K++FF++ + L LP++V +++
Sbjct: 103 MIDVKTKKRREKNSQMLLEGSRLIEDAIQAGVVPKVIFFNRLSDVLPLSLPKEVKLYKIP 162
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA--SLPLNIVCDNIRDPGNMGSILRVCA 118
Y+ IQLWS+L T PGIIGIFE+P +++ PA ++PL I+CDNIR+PGN+GSILR A
Sbjct: 163 YRTIQLWSNLTTSPGIIGIFEIP--DVSNKKPANDAIPLTIICDNIREPGNLGSILRAAA 220
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAAA 144
AVG +++ +GCVD+++ KV+R+A
Sbjct: 221 AVGCEKLLLMKGCVDLWEPKVVRSAT 246
>gi|307197937|gb|EFN79022.1| RNA methyltransferase-like protein 1 [Harpegnathos saltator]
Length = 436
Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats.
Identities = 64/145 (44%), Positives = 107/145 (73%), Gaps = 4/145 (2%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M+ ++++K+REK G ++LEG R++ DA++A + +++FF++ + +L LP++V +++
Sbjct: 114 MINIRTKKRREKNGQILLEGSRLIQDAIQAGVMPQIIFFNRLADVLQLSLPKEVQLYKIP 173
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA--SLPLNIVCDNIRDPGNMGSILRVCA 118
Y+ IQLWS L T PGI GIF++P + + PA ++PL I+CDNIR+PGN+GSI+R A
Sbjct: 174 YRTIQLWSTLTTSPGIFGIFDIP--DVENNTPANDAIPLTIICDNIREPGNLGSIIRTAA 231
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
AVG +++ +GCVDI++ KV+R A
Sbjct: 232 AVGCEKLLLMKGCVDIWEPKVLRGA 256
>gi|340724742|ref|XP_003400740.1| PREDICTED: RNA methyltransferase-like protein 1-like [Bombus
terrestris]
Length = 418
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 100/145 (68%), Gaps = 2/145 (1%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M +KSRK+REK ++LEGKR++IDA+K+ + F+ + L LP +V ++V
Sbjct: 106 MSNLKSRKRREKNDEIVLEGKRLIIDAIKSGAIPHSIIFNDSSDIAALKLPNEVKLYKVP 165
Query: 61 YKNIQLWSDLVTPPGIIGIFELP-AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
Y IQLWS L T PG++GIF+ P H +D A LPL IVCDNIR+PGN+GSI+R AA
Sbjct: 166 YTTIQLWSALTTSPGLLGIFKTPNVHKNEPVDNA-LPLTIVCDNIREPGNLGSIMRAAAA 224
Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
VG +++ +GCVD++D KV+R+AA
Sbjct: 225 VGCEKLIIMKGCVDLWDPKVLRSAA 249
>gi|307188520|gb|EFN73257.1| RNA methyltransferase-like protein 1 [Camponotus floridanus]
Length = 459
Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 99/143 (69%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
MV +K+R +REK ++LEG R++ D ++A +K K +FFS+ + L L +++ ++V
Sbjct: 126 MVNVKTRTKREKNNNMLLEGFRLIKDGIQAGIKPKAIFFSRLSDILPLSLSKEIKLYKVP 185
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
Y+ IQLWS+L T PGI GIFE+P ++PL I+CDNIR+PGN+G+ILR AAV
Sbjct: 186 YRTIQLWSNLTTSPGIFGIFEIPDVTAKQPVDDAIPLTIICDNIREPGNLGTILRAAAAV 245
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G +++ +GC D++D+KV+R A
Sbjct: 246 GCEKLLLMKGCTDLWDSKVLRTA 268
>gi|115649674|ref|XP_782724.2| PREDICTED: RNA methyltransferase-like protein 1-like
[Strongylocentrotus purpuratus]
Length = 449
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/144 (45%), Positives = 102/144 (70%), Gaps = 4/144 (2%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP-EDVPQHRVDYKN 63
KSRK RE+ G ++LEG+R++ DAL++ + +FFSQ ++ LPL V +V YK+
Sbjct: 146 KSRKYREQSGKIILEGRRLITDALESGARADTIFFSQVSNIEGLPLAGSRVNLVKVAYKD 205
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPAS---LPLNIVCDNIRDPGNMGSILRVCAAV 120
I LWSD+ TP GI+G+F+ P H ++D S LP++++CDNIRDPGN+G+ILR AA
Sbjct: 206 ISLWSDVSTPQGIVGVFQRPKHENLNLDQTSTDHLPVSLICDNIRDPGNLGTILRSAAAA 265
Query: 121 GARQVVCSRGCVDIYDNKVIRAAA 144
++++ ++GCVD+++ KV+R+ A
Sbjct: 266 ACQKILLTKGCVDVWEPKVLRSGA 289
>gi|189241058|ref|XP_968858.2| PREDICTED: similar to RNA methyltransferase like 1 [Tribolium
castaneum]
gi|270014173|gb|EFA10621.1| hypothetical protein TcasGA2_TC016258 [Tribolium castaneum]
Length = 403
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 111/147 (75%), Gaps = 6/147 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP--LPEDVPQ-H 57
+V +KS+K+++KK ++LEGKR++ DAL++ LK + FS+ D ++ L LP+ Q +
Sbjct: 132 LVDVKSKKEQDKKDLILLEGKRLIRDALQSGCALKYILFSRKDEIEYLKPFLPKVGAQLY 191
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS-LPLNIVCDNIRDPGNMGSILRV 116
++ YK +Q+WSDL T PGI+G+F+ P P+ + +P + LP+ ++CDNIR+PGN+G+ILR+
Sbjct: 192 KMPYKEMQMWSDLTTNPGIMGLFKTP--PVEAFEPVNPLPITVICDNIREPGNLGTILRI 249
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
CAAVG +V+ ++GCV+++D KV+R A
Sbjct: 250 CAAVGCARVILTKGCVNLWDTKVLRGA 276
>gi|380012002|ref|XP_003690080.1| PREDICTED: LOW QUALITY PROTEIN: RNA methyltransferase-like protein
1-like [Apis florea]
Length = 418
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 99/144 (68%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M +KSRK+REK ++LEG+R++ DALK+ ++ ++ + L LPE+V ++V
Sbjct: 108 MTKLKSRKKREKDNEIILEGQRLIADALKSGAIPSIIIYNDPTNITALKLPEEVKLYKVP 167
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
YK IQLWS L T PG++GIF+ P +LPL I+CDNIR+PGN+GSI+RV AV
Sbjct: 168 YKTIQLWSSLSTSPGLLGIFKTPNVNNNIPVNNALPLTIICDNIREPGNLGSIMRVATAV 227
Query: 121 GARQVVCSRGCVDIYDNKVIRAAA 144
G +++ +GCVD++D KV+R+AA
Sbjct: 228 GCEKLILMKGCVDLWDPKVLRSAA 251
>gi|350424790|ref|XP_003493913.1| PREDICTED: RNA methyltransferase-like protein 1-like [Bombus
impatiens]
Length = 418
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 99/145 (68%), Gaps = 2/145 (1%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M +KSRK+REK ++LEGKR++IDA+K+ + F+ + L LP +V ++V
Sbjct: 106 MSNLKSRKRREKNDEIVLEGKRLIIDAIKSGAIPHSIIFNDSSDIAALKLPNEVKLYKVP 165
Query: 61 YKNIQLWSDLVTPPGIIGIFELP-AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
Y IQLWS L T PG++GIF+ P H D A LPL IVCDNIR+PGN+GSI+R AA
Sbjct: 166 YTTIQLWSALTTSPGLLGIFKTPNVHKNEPADNA-LPLTIVCDNIREPGNLGSIMRAAAA 224
Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
VG +++ +GCVD++D KV+R+AA
Sbjct: 225 VGCEKLILMKGCVDLWDPKVLRSAA 249
>gi|321463166|gb|EFX74184.1| hypothetical protein DAPPUDRAFT_307431 [Daphnia pulex]
Length = 476
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 98/143 (68%), Gaps = 3/143 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDY 61
+KS + R+ G ++LEG+R++ DA+ A + +FFS +L LPL + + ++V Y
Sbjct: 158 VKSSRARKASGKILLEGERLIADAMNAGAYAETIFFSDTKLLTTLPLKKYPSIQLYQVQY 217
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
IQLWSDL T PGI+GIF++ P S P +PL I+CDNIRDPGNMG+I+R AAVG
Sbjct: 218 GKIQLWSDLTTSPGIMGIFDV-TKPTNSDIPHHIPLTIICDNIRDPGNMGTIIRCAAAVG 276
Query: 122 ARQVVCSRGCVDIYDNKVIRAAA 144
+ ++ + CVD++D+KV+RAAA
Sbjct: 277 CKALITTPDCVDVWDSKVLRAAA 299
>gi|384947970|gb|AFI37590.1| RNA methyltransferase-like protein 1 [Macaca mulatta]
gi|387541928|gb|AFJ71591.1| RNA methyltransferase-like protein 1 [Macaca mulatta]
Length = 420
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 103/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLITDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL+++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMAYPKTQLQ-HSLPLSLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDPWEPKVLRAG 256
>gi|355568040|gb|EHH24321.1| RNA methyltransferase-like protein 1 [Macaca mulatta]
gi|380814264|gb|AFE79006.1| RNA methyltransferase-like protein 1 [Macaca mulatta]
Length = 420
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 103/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLITDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL+++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMAYPKTQLQ-HSLPLSLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDPWEPKVLRAG 256
>gi|402898150|ref|XP_003912090.1| PREDICTED: RNA methyltransferase-like protein 1 [Papio anubis]
Length = 420
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 103/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLITDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL+++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMAYPKTQLQ-HSLPLSLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDPWEPKVLRAG 256
>gi|62897359|dbj|BAD96620.1| RNA methyltransferase like 1 variant [Homo sapiens]
Length = 420
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 103/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD+++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDVWEPKVLRAG 256
>gi|383419627|gb|AFH33027.1| RNA methyltransferase-like protein 1 [Macaca mulatta]
Length = 420
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 103/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLITDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WS+LVTP GI+GIF P H P + SLPL+++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSNLVTPQGIMGIFAKPDHVKMAYPKTQLQ-HSLPLSLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDPWEPKVLRAG 256
>gi|109112660|ref|XP_001085109.1| PREDICTED: RNA methyltransferase like 1 isoform 2 [Macaca mulatta]
Length = 420
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 103/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLITDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WS+LVTP GI+GIF P H P + SLPL+++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSNLVTPQGIMGIFAKPDHVKMAYPKTQLQ-HSLPLSLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDPWEPKVLRAG 256
>gi|8922534|ref|NP_060616.1| RNA methyltransferase-like protein 1 [Homo sapiens]
gi|426383386|ref|XP_004058262.1| PREDICTED: RNA methyltransferase-like protein 1 [Gorilla gorilla
gorilla]
gi|74734265|sp|Q9HC36.2|RMTL1_HUMAN RecName: Full=RNA methyltransferase-like protein 1
gi|19749337|gb|AAG17988.2|AF177344_1 unknown [Homo sapiens]
gi|7022703|dbj|BAA91694.1| unnamed protein product [Homo sapiens]
gi|119611048|gb|EAW90642.1| RNA methyltransferase like 1 [Homo sapiens]
gi|307686131|dbj|BAJ20996.1| RNA methyltransferase like 1 [synthetic construct]
Length = 420
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|15079419|gb|AAH11550.1| RNA methyltransferase like 1 [Homo sapiens]
gi|312153368|gb|ADQ33196.1| RNA methyltransferase like 1 [synthetic construct]
Length = 420
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|410213724|gb|JAA04081.1| RNA methyltransferase like 1 [Pan troglodytes]
gi|410250648|gb|JAA13291.1| RNA methyltransferase like 1 [Pan troglodytes]
gi|410296164|gb|JAA26682.1| RNA methyltransferase like 1 [Pan troglodytes]
gi|410329603|gb|JAA33748.1| RNA methyltransferase like 1 [Pan troglodytes]
Length = 420
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|30047088|gb|AAH50614.1| RNA methyltransferase like 1 [Homo sapiens]
Length = 420
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP G++GIF P H P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGVMGIFAKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|332262651|ref|XP_003280373.1| PREDICTED: RNA methyltransferase-like protein 1 [Nomascus
leucogenys]
Length = 420
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 101/150 (67%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLITDALKAGAVAKTFFFSRLEYLKELPVNKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|355753587|gb|EHH57552.1| RNA methyltransferase-like protein 1 [Macaca fascicularis]
Length = 420
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLITDALKAGAVPKMFFFSRLEYLKELPVDKLKSVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL+++CDN+ DPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMAYPKTQLQ-HSLPLSLICDNLLDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDPWEPKVLRAG 256
>gi|147905554|ref|NP_001085673.1| RNA methyltransferase-like protein 1 [Xenopus laevis]
gi|82184432|sp|Q6GPJ4.1|RMTL1_XENLA RecName: Full=RNA methyltransferase-like protein 1
gi|49116890|gb|AAH73125.1| MGC84529 protein [Xenopus laevis]
Length = 419
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 102/146 (69%), Gaps = 8/146 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH---RVDY 61
KS+K R++ G ++LEG+R+L DAL + L+ +FFS+ D LKE P P+ + + +V++
Sbjct: 107 KSKKFRDRHGQVLLEGQRLLTDALDSGAVLQTLFFSRVDYLKEFP-PDKLRKTNLIKVNF 165
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASI----DPASLPLNIVCDNIRDPGNMGSILRVC 117
+NI++WSDLVTP G++GIF P H + +LPL+++CDNIRDPGN+G+ILR
Sbjct: 166 ENIKIWSDLVTPQGLMGIFAKPDHVKMTYPDTQTKHTLPLSLICDNIRDPGNLGTILRCA 225
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V+ ++GCVD ++ KV+RA
Sbjct: 226 AGAGCSKVLLTKGCVDAWEPKVLRAG 251
>gi|343960937|dbj|BAK62058.1| RNA methyltransferase like 1 [Pan troglodytes]
Length = 420
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LK+LP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKQLPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|311268037|ref|XP_003131858.1| PREDICTED: RNA methyltransferase like 1 [Sus scrofa]
Length = 422
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K+ FFS+ + +KELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKIFFFSRLEYIKELPIEKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSIL 114
V +++I+ WSDLVTP GI+GIF P H + +LPL ++CDN+RDPGN+G+IL
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHAKMTYPETQLRHTLPLLLICDNLRDPGNLGTIL 227
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V+ ++GCVD ++ KV+RA
Sbjct: 228 RSAAGAGCSRVLLTKGCVDAWEPKVLRAG 256
>gi|431891008|gb|ELK01887.1| RNA methyltransferase-like protein 1 [Pteropus alecto]
Length = 421
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA ++ FFS+ + +KELP+ + V +
Sbjct: 108 MTIVKSRPFREKRGKILLEGRRLIADALKAGAVPQVFFFSRLEYIKELPIDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSIL 114
V +++I+ WSDLVTP GI+GIF P H + SLPL ++CDNIRDPGN+G+IL
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVTMTYPETQLHHSLPLLLICDNIRDPGNLGTIL 227
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V+ ++GCVD ++ KV+RA
Sbjct: 228 RSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|149724758|ref|XP_001502222.1| PREDICTED: RNA methyltransferase like 1 [Equus caballus]
Length = 420
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K+ FFS+ D +KELP + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLDYIKELPTDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSIL 114
V +++I+ WSDLVTP GI+GIF P H + SLPL ++CDN+RDPGN+G+IL
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHSLPLLLICDNLRDPGNLGTIL 227
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V+ ++GCVD ++ KV+RA
Sbjct: 228 RSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|344290581|ref|XP_003417016.1| PREDICTED: RNA methyltransferase-like protein 1 [Loxodonta
africana]
Length = 421
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REKKG ++LEG+R++ DALKA K FFS+ + +KELP+ + V +
Sbjct: 107 MTIVKSRPFREKKGKILLEGRRLIADALKAGAVPKTFFFSRLEYIKELPVDKLKSVSLIK 166
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELP-----AHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P +P + SLPL ++CDN+RDPGN+G+I
Sbjct: 167 VKFEDIKDWSDLVTPQGIMGIFAKPDYVKMTYPETQLH-HSLPLLLICDNLRDPGNLGTI 225
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD+++ KV+RA
Sbjct: 226 LRSAAGAGCSKVLLTKGCVDVWEPKVLRAG 255
>gi|157818915|ref|NP_001101752.1| uncharacterized protein LOC360569 [Rattus norvegicus]
gi|149053441|gb|EDM05258.1| similar to putative RNA methyltransferase (predicted) [Rattus
norvegicus]
Length = 418
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + +KELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKMFFFSRLEYIKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA-----SLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P P+ P SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKP-DPVKMTYPETQLHHSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|403275274|ref|XP_003929379.1| PREDICTED: RNA methyltransferase-like protein 1 [Saimiri
boliviensis boliviensis]
Length = 418
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 101/150 (67%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK G ++LEG+R++ DALKA K+ FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKHGKILLEGRRLIADALKAGAVPKVFFFSRVEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|426238703|ref|XP_004013287.1| PREDICTED: RNA methyltransferase-like protein 1 [Ovis aries]
Length = 421
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 102/149 (68%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K+ FFS+ + +KELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLEYIKELPIEKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSIL 114
V +++I+ WSDLVTP GI+GIF P H + +LP++++CDN+RDPGN+G+IL
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHTLPISLICDNLRDPGNLGTIL 227
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V+ ++GCVD ++ KV+RA
Sbjct: 228 RSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|133777689|gb|AAI15624.1| RNA methyltransferase like 1 [Mus musculus]
gi|133777901|gb|AAI15623.1| RNA methyltransferase like 1 [Mus musculus]
Length = 311
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K FFS+ + +KELP+ + DV +
Sbjct: 1 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIK 60
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASL-----PLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P P+ P +L PL ++CDN+RDPGN+G+I
Sbjct: 61 VKFEDIKDWSDLVTPQGIMGIFAKP-DPVKMTYPETLLHHTLPLVLICDNLRDPGNLGTI 119
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 120 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 149
>gi|54887339|gb|AAH38288.1| Rnmtl1 protein, partial [Mus musculus]
Length = 413
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K FFS+ + +KELP+ + DV +
Sbjct: 103 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIK 162
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASL-----PLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P P+ P +L PL ++CDN+RDPGN+G+I
Sbjct: 163 VKFEDIKDWSDLVTPQGIMGIFAKP-DPVKMTYPETLLHHTLPLVLICDNLRDPGNLGTI 221
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 222 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 251
>gi|26380829|dbj|BAC25446.1| unnamed protein product [Mus musculus]
gi|127799761|gb|AAH90975.2| RNA methyltransferase like 1 [Mus musculus]
Length = 311
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K FFS+ + +KELP+ + DV +
Sbjct: 1 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIK 60
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS-----LPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P P+ P + LPL ++CDN+RDPGN+G+I
Sbjct: 61 VKFEDIKDWSDLVTPQGIMGIFAKP-DPVKMTYPETPLHHTLPLVLICDNLRDPGNLGTI 119
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 120 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 149
>gi|291232158|ref|XP_002736012.1| PREDICTED: RNA methyltransferase like 1-like [Saccoglossus
kowalevskii]
Length = 445
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 103/148 (69%), Gaps = 5/148 (3%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE-DVPQHRV 59
+ M+SRK RE+ ++LEG+R++IDA+ A + ++FS+ + L+ +P E D R+
Sbjct: 131 LTLMRSRKYREQTKKVLLEGRRLIIDAILAGAECHTIYFSRVESLEGIPWYETDAELLRI 190
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAH---PIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
YK ++LWSD+VTP GI+ +F P P+ S + S+PL ++CDNIR+PGN+G++LR
Sbjct: 191 PYKEVKLWSDVVTPQGIMAVFSQPRFEDLPMMS-EEQSIPLTVICDNIREPGNLGALLRS 249
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAAA 144
A G++Q++ ++GCVDI+D KV+RA A
Sbjct: 250 AVAAGSQQILVTKGCVDIWDLKVLRAGA 277
>gi|166197675|ref|NP_899086.2| RNA methyltransferase-like protein 1 [Mus musculus]
gi|81889274|sp|Q5ND52.1|RMTL1_MOUSE RecName: Full=RNA methyltransferase-like protein 1
gi|148680911|gb|EDL12858.1| RNA methyltransferase like 1 [Mus musculus]
Length = 418
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K FFS+ + +KELP+ + DV +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS-----LPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P P+ P + LPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKP-DPVKMTYPETPLHHTLPLVLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|74190703|dbj|BAE28150.1| unnamed protein product [Mus musculus]
Length = 418
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K FFS+ + +KELP+ + DV +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS-----LPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P P+ P + LPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKP-DPVKMTYPETPLHHTLPLVLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|354489230|ref|XP_003506767.1| PREDICTED: RNA methyltransferase-like protein 1 [Cricetulus
griseus]
gi|344240639|gb|EGV96742.1| RNA methyltransferase-like protein 1 [Cricetulus griseus]
Length = 419
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K+ FFS+ + +KELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLEYIKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA-----SLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P P+ P SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKP-DPVKMTYPETQLHHSLPLVLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|76643639|ref|XP_582975.2| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
Length = 449
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 102/149 (68%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA ++ FFS+ + +KELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPQIFFFSRLEYIKELPIEKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSIL 114
V +++I+ WSDLVTP GI+GIF P H + +LP++++CDN+RDPGN+G+IL
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHTLPISLICDNLRDPGNLGTIL 227
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V+ ++GCVD ++ KV+RA
Sbjct: 228 RSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|297486581|ref|XP_002695756.1| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
gi|296476912|tpg|DAA19027.1| TPA: RNA methyltransferase like 1 [Bos taurus]
Length = 413
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 102/149 (68%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA ++ FFS+ + +KELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPQIFFFSRLEYIKELPIEKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSIL 114
V +++I+ WSDLVTP GI+GIF P H + +LP++++CDN+RDPGN+G+IL
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHTLPISLICDNLRDPGNLGTIL 227
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V+ ++GCVD ++ KV+RA
Sbjct: 228 RSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|260803697|ref|XP_002596726.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae]
gi|229281985|gb|EEN52738.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae]
Length = 309
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 102/149 (68%), Gaps = 5/149 (3%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ-HRV 59
+ +KS+K+R+K+G ++LEGKR++ DA+KA L+ +FF + L+ LPL E + ++V
Sbjct: 9 LATVKSKKRRDKEGLILLEGKRLIKDAIKAGGILESLFFCHVEDLEGLPLQETTAELYKV 68
Query: 60 DYKNIQLWSDLVTPPGIIGIFELP----AHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
+K+I WSD VTP +I IF P + D LPL ++CDNIRDPGNMG+I+R
Sbjct: 69 KHKDILDWSDTVTPQKVIAIFTRPDVNRLYTPEYADAELLPLTLICDNIRDPGNMGTIIR 128
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
AA G ++++ ++GCVD++++KV+RA A
Sbjct: 129 SAAAAGCQKLLVTKGCVDVWESKVLRAGA 157
>gi|440912293|gb|ELR61877.1| RNA methyltransferase-like protein 1, partial [Bos grunniens mutus]
Length = 410
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 102/149 (68%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA ++ FFS+ + +KELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPQIFFFSRLEYIKELPIEKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSIL 114
V +++I+ WSDLVTP GI+GIF P H + +LP++++CDN+RDPGN+G+IL
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHTLPISLICDNLRDPGNLGTIL 227
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V+ ++GCVD ++ KV+RA
Sbjct: 228 RSAAGAGCIKVLLTKGCVDAWEPKVLRAG 256
>gi|291405419|ref|XP_002718940.1| PREDICTED: RNA methyltransferase like 1 [Oryctolagus cuniculus]
Length = 413
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 102/149 (68%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA ++ FFS+ + +KELP+ + V +
Sbjct: 104 MTIVKSRPFREKQGKILLEGRRLIADALKAGAAPQVFFFSRLEYIKELPVEKLKGVRLVK 163
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSIL 114
V +++I+ WSDLVTP GI+GIF P + + + SLPL ++CDN+RDPGN+G++L
Sbjct: 164 VKFEDIKDWSDLVTPQGIMGIFAKPDYSKMTYPESQRHHSLPLLLICDNLRDPGNLGTVL 223
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V+ ++GCVD ++ KV+RA
Sbjct: 224 RSAAGAGCSRVLLTKGCVDAWEPKVLRAG 252
>gi|160358655|sp|A4QNL8.1|RMTL1_XENTR RecName: Full=RNA methyltransferase-like protein 1
gi|140832729|gb|AAI35862.1| RNA methyltransferase like 1 [Xenopus (Silurana) tropicalis]
Length = 415
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 100/146 (68%), Gaps = 8/146 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH---RVDY 61
KS+K R++ G ++LEG+R+L DAL++ L+ +FFS+ D LK P P+ + + +V++
Sbjct: 107 KSKKFRDRHGQVLLEGRRLLTDALESGAVLQTLFFSRVDYLKLFP-PDKLRKANLIKVNF 165
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSILRVC 117
NI++WSD+V P G++GIF P H S +LPL+++CDNIRDPGN+G+ILR
Sbjct: 166 DNIKIWSDVVAPQGLMGIFAKPDHEKISYPTTQTKHTLPLSLICDNIRDPGNLGTILRCA 225
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V+ ++GCVD ++ KV+RA
Sbjct: 226 AGAGCNKVLLTKGCVDAWEPKVLRAG 251
>gi|62859047|ref|NP_001016220.1| RNA methyltransferase-like protein 1 [Xenopus (Silurana)
tropicalis]
Length = 415
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 100/146 (68%), Gaps = 8/146 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH---RVDY 61
KS+K R++ G ++LEG+R+L DAL++ L+ +FFS+ D LK P P+ + + +V++
Sbjct: 107 KSKKFRDRHGQVLLEGRRLLTDALESGAVLQTLFFSRVDYLKLFP-PDKLRKANLIKVNF 165
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSILRVC 117
NI++WSD+V P G++GIF P H S +LPL+++CDNIRDPGN+G+ILR
Sbjct: 166 DNIKIWSDVVAPQGLMGIFAKPDHEKISYPTTQTKHTLPLSLICDNIRDPGNLGTILRCA 225
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V+ ++GCVD ++ KV+RA
Sbjct: 226 AGAGCNKVLLTKGCVDAWEPKVLRAG 251
>gi|357610425|gb|EHJ66972.1| putative RNA methyltransferase like 1 [Danaus plexippus]
Length = 389
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 100/147 (68%), Gaps = 3/147 (2%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP--LPED-VPQH 57
+V +KS+K+R + +M+EG R+++D L+A L+ V FSQ + L +L LP+ V +
Sbjct: 104 LVRLKSKKERLRSQQIMVEGWRLIVDGLEAKCALRYVIFSQLEDLNKLRPFLPDTGVKFY 163
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
++ YK I+LWS++ TPPGIIG+F+ P LP++++CDN+R PGN+G ILR
Sbjct: 164 KIPYKEIELWSNVDTPPGIIGVFDTPTTDNVKWLSKPLPIHLICDNVRTPGNLGGILRAA 223
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAAA 144
A VG +V+ ++GCVD++D KV+R+ A
Sbjct: 224 AGVGCEKVLLTKGCVDLWDPKVVRSGA 250
>gi|193617942|ref|XP_001949552.1| PREDICTED: RNA methyltransferase-like protein 1-like [Acyrthosiphon
pisum]
Length = 386
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 104/155 (67%), Gaps = 17/155 (10%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE---DVPQ- 56
M+ +K++K+R++ ++LEGKR++ DAL A +K K +FFSQ +L+ L LPE D+P
Sbjct: 91 MMEIKNKKRRQQNSSILLEGKRLIQDALNAGVKPKQIFFSQKRVLESLCLPEELRDLPAS 150
Query: 57 ----HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASID----PASLPLNIVCDNIRDPG 108
++ YK IQL+S+ T GI+GIFE+P +ID + P+ ++CDNIR+PG
Sbjct: 151 STIFYKAPYKMIQLFSETETSQGIMGIFEIP-----TIDHRARKNAFPITVICDNIREPG 205
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
N+G++LR AVGA QV+ +GC +++ +KV+RA
Sbjct: 206 NLGAVLRTVTAVGASQVILMKGCTNLWGDKVLRAG 240
>gi|348505532|ref|XP_003440315.1| PREDICTED: RNA methyltransferase-like protein 1-like [Oreochromis
niloticus]
Length = 454
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 66/150 (44%), Positives = 99/150 (66%), Gaps = 18/150 (12%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYK 62
+SR R+ +G ++LEG+R++ DAL A K + VFFS D L+ELPL + +V ++
Sbjct: 134 RSRTFRDHQGKILLEGRRLICDALDAGAKPQTVFFSTVDRLRELPLDKLRRATLVKVKFE 193
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPA---------SLPLNIVCDNIRDPGNMGSI 113
+I+LWSD+V P G+I IF P DP+ S+PL+++CDNIRDPGN+G++
Sbjct: 194 DIKLWSDVVAPQGVIAIFSRP-------DPSQLNFASKGHSVPLSLICDNIRDPGNLGTM 246
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR AA G V+ ++GCVD+++ KV+RAA
Sbjct: 247 LRCAAAAGCHNVLLTKGCVDVWEPKVLRAA 276
>gi|410910234|ref|XP_003968595.1| PREDICTED: RNA methyltransferase-like protein 1A-like [Takifugu
rubripes]
Length = 446
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYK 62
+SR RE +G ++LEG+R++ DAL A +MVFFS D L+ELPL + +V ++
Sbjct: 130 RSRTFREHQGKILLEGRRLICDALDAGAVPQMVFFSTADRLRELPLDKLRRATLIKVRFE 189
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIA---SIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+I++WSDLVTP G+I IF P P+ + S+PL+++CDNIRDPGN+G++LR AA
Sbjct: 190 DIKVWSDLVTPQGVIAIFSRP-DPLEINFTGRQHSVPLSLICDNIRDPGNLGTMLRCAAA 248
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V+ ++GCVD+++ KV+RAA
Sbjct: 249 AGCHDVLLTKGCVDVWEPKVLRAA 272
>gi|351710435|gb|EHB13354.1| RNA methyltransferase-like protein 1 [Heterocephalus glaber]
Length = 422
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 100/150 (66%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR RE+KG ++LEG+R++ DALKA K+ FFS+ + +KELP + V +
Sbjct: 108 MTIVKSRSFRERKGKILLEGRRLIADALKAGAVPKVFFFSRLEYVKELPAHKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELP-----AHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLV P GI+GIF P +P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVAPQGIMGIFAKPDCVKMTYPETQLH-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|126314205|ref|XP_001370297.1| PREDICTED: RNA methyltransferase-like protein 1-like [Monodelphis
domestica]
Length = 517
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 101/150 (67%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR R+K+G ++LEG+R++ DAL+A + VFFS+ + +KELP + V +
Sbjct: 112 MTIVKSRSFRDKQGKILLEGRRLIADALRAGAVPRTVFFSRLEYVKELPADKLKGVSLIK 171
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V + +I+ WSDLV P GI+GIF P H P ++ SLPL ++CDN+RDPGN+G+I
Sbjct: 172 VKFDDIKEWSDLVAPQGIMGIFAKPDHVKMKYPETQLE-YSLPLLLICDNLRDPGNLGTI 230
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G ++V+ ++GCVD ++ KV+RA
Sbjct: 231 LRSAAGAGCQKVLLTKGCVDAWEPKVLRAG 260
>gi|410050813|ref|XP_003954464.1| PREDICTED: LOW QUALITY PROTEIN: RNA methyltransferase-like protein
1 [Pan troglodytes]
Length = 421
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 101/151 (66%), Gaps = 9/151 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGI-FELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGS 112
V +++I+ WSDLVTP GI+G F P H P + SLPL ++CDN+RDPGN+G+
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGXDFPKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGT 226
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
ILR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 ILRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 257
>gi|348567623|ref|XP_003469598.1| PREDICTED: RNA methyltransferase-like protein 1-like [Cavia
porcellus]
Length = 425
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 100/150 (66%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DAL+A K+ FFS+ + +KELP + V +
Sbjct: 108 MTIVKSRSFREKQGKILLEGRRLIADALQAGAVPKVFFFSRLEYIKELPTDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELP-----AHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLV P GI+GIF P +P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVAPQGIMGIFAKPDCVKMTYPKNQLH-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>gi|62955359|ref|NP_001017695.1| RNA methyltransferase-like protein 1A [Danio rerio]
gi|82178059|sp|Q566V3.1|RML1A_DANRE RecName: Full=RNA methyltransferase-like protein 1A
gi|62202803|gb|AAH93318.1| RNA methyltransferase like 1 [Danio rerio]
gi|182890496|gb|AAI64530.1| RNA methyltransferase like 1 [Danio rerio]
Length = 435
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 97/145 (66%), Gaps = 6/145 (4%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP--EDVPQHRVDYK 62
+SR R+K+G ++LEG+R++ DAL A +M+FFS + L+ELPL + +V Y+
Sbjct: 131 RSRAFRDKEGKVLLEGRRLICDALSAGASPQMIFFSLLERLQELPLDKLQQAKLIKVKYE 190
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDP----ASLPLNIVCDNIRDPGNMGSILRVCA 118
+I+LWSDLVTP G+I IF P + S+PL ++CDN+RD GN+G+ILR A
Sbjct: 191 DIKLWSDLVTPQGLIAIFSKPDASRLTFPKDARLQSVPLFLICDNVRDAGNLGTILRCAA 250
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V+ S+GCVD ++ KV+R+A
Sbjct: 251 AAGGDRVLLSKGCVDAWEPKVLRSA 275
>gi|225707400|gb|ACO09546.1| Hypothetical tRNA/rRNA methyltransferase slr1673 [Osmerus mordax]
Length = 454
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 98/146 (67%), Gaps = 8/146 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYK 62
+SR RE +G ++LEG+R++ DAL A +MVFFS + L ELPL + +V ++
Sbjct: 133 RSRTYRELQGKILLEGRRLICDALAAGANPQMVFFSSVEKLSELPLDKLKRATLVKVKFE 192
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDP-----ASLPLNIVCDNIRDPGNMGSILRVC 117
+I++WSDLV P G+I IF P P + P S+PL+++CDN+RDPGN+G+ILR
Sbjct: 193 DIKIWSDLVAPQGVIAIFSRP-DPSRLVFPRDQMGQSVPLSLICDNVRDPGNLGTILRCA 251
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AA G + V+ ++GCVD ++ KV+R+A
Sbjct: 252 AAAGCQDVLLTKGCVDAWEPKVLRSA 277
>gi|410980265|ref|XP_003996498.1| PREDICTED: RNA methyltransferase-like protein 1 [Felis catus]
Length = 421
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK G ++LEG+R++ DALKA K+ FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKHGKILLEGRRLIADALKAGAVPKIFFFSRLEYLKELPIDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS-----LPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H + P + LPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDH-VKMTYPETQLRHLLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RAA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAA 256
>gi|118100282|ref|XP_415864.2| PREDICTED: RNA methyltransferase like 1 [Gallus gallus]
Length = 407
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 95/146 (65%), Gaps = 4/146 (2%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR-- 58
+ KSR R++ G ++LEG R++ DAL+A + +FFS + L+ELP P + R
Sbjct: 87 VTIAKSRSFRDRHGKVLLEGLRLIRDALQAGAAPRALFFSTAEHLRELP-PAPLKGARLV 145
Query: 59 -VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V +++I+ WSD+V P G+IGIF P H S A LP+ ++CDNIRDPGN+G+ILR
Sbjct: 146 RVRFEDIKCWSDVVAPQGMIGIFSKPDHAKMSYPTAQLPIVLICDNIRDPGNLGTILRSA 205
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V+ ++GCVD ++ KV+RA
Sbjct: 206 AGAGCEKVLLTKGCVDPWEPKVLRAG 231
>gi|242022908|ref|XP_002431879.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517220|gb|EEB19141.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 364
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 90/125 (72%)
Query: 20 GKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGI 79
KR++ DAL +L+ K++F+S+ ++ L L E+V + +VDYK +++WSD+ T G+I +
Sbjct: 81 SKRLIQDALSIDLQPKIIFYSRLSDIENLKLSENVRKCQVDYKQLRIWSDVATSQGVIAV 140
Query: 80 FELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKV 139
F+LP ++PL I+CDNIR+PGN+GSILRV AVG ++V+ + GCVD+++ KV
Sbjct: 141 FDLPDQKKIINKFKTVPLTIICDNIREPGNLGSILRVAGAVGCKKVIMTTGCVDLWNAKV 200
Query: 140 IRAAA 144
IR+AA
Sbjct: 201 IRSAA 205
>gi|449269855|gb|EMC80596.1| RNA methyltransferase-like protein 1, partial [Columba livia]
Length = 319
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 96/149 (64%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP--EDVPQHR 58
+ KS+K R+ G ++LEG+R++ DAL+A L+ +FFS LKELP + +
Sbjct: 4 VTIAKSKKFRDHHGKVLLEGQRLIKDALEAGAVLQTLFFSTVGHLKELPEAALKRANLVK 63
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSIL 114
V ++ I+ WSDLVTP G+IGIF P H S A S+PL ++CDNIRDPGN+G+IL
Sbjct: 64 VKFEEIKSWSDLVTPQGLIGIFSKPDHTKMSYPAAQLSRSVPLLLICDNIRDPGNLGTIL 123
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V+ ++GCVD ++ KV+RA
Sbjct: 124 RSAAGAGCEKVLLTKGCVDPWEPKVLRAG 152
>gi|355716999|gb|AES05791.1| RNA methyltransferase like 1 [Mustela putorius furo]
Length = 426
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 103/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K+ FFS+ + +KELP+ + V +
Sbjct: 113 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLEYIKELPIDKLKGVSLIK 172
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS-----LPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H + P + LPL ++CDN+RDPGN+G+I
Sbjct: 173 VKFEDIKDWSDLVTPQGIMGIFAKPDH-VKMTYPETQLRHLLPLLLICDNLRDPGNLGTI 231
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RAA
Sbjct: 232 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAA 261
>gi|326931469|ref|XP_003211851.1| PREDICTED: RNA methyltransferase-like protein 1-like, partial
[Meleagris gallopavo]
Length = 375
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH-----RV 59
KSR R++ G ++LEG+R++ DAL+A + +FFS L+ELP P RV
Sbjct: 60 KSRSFRDRHGKVLLEGQRLIRDALEAGAVPRALFFSTALHLRELP---SAPLKGARLVRV 116
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+++I+ WSD+V P G+IGIF P H S A LPL ++CDNIRDPGN+G+ILR A
Sbjct: 117 RFEDIKCWSDVVAPQGMIGIFSKPDHAKMSYPAAQLPLVLICDNIRDPGNLGTILRSAAG 176
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G +V+ ++GCVD ++ KV+RA
Sbjct: 177 AGCEKVLLTKGCVDPWEPKVLRAG 200
>gi|73967329|ref|XP_853914.1| PREDICTED: RNA methyltransferase like 1 [Canis lupus familiaris]
Length = 423
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 103/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K+ FFS+ + +KELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLEYIKELPIDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS-----LPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H + P + LPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDH-VKMTYPETQLRHLLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RAA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDPWEPKVLRAA 256
>gi|327290181|ref|XP_003229802.1| PREDICTED: RNA methyltransferase-like protein 1-like [Anolis
carolinensis]
Length = 406
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 95/149 (63%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
+ KSR REK G ++LEG+R+++DAL+A + +FFS + LKELP + +
Sbjct: 89 VTLAKSRAFREKHGKILLEGRRLILDALEAGAAPQTLFFSSTEHLKELPAAKLRGASLIK 148
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASI----DPASLPLNIVCDNIRDPGNMGSIL 114
V+ K+++ WSD+VT G IGIF P H + + LPL+++CDNIRDPGN+G+IL
Sbjct: 149 VNSKDLKDWSDVVTSQGAIGIFSRPDHAKMTYPEVPEEHQLPLSLICDNIRDPGNLGTIL 208
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V+ +GCVD ++ KV+RA
Sbjct: 209 RSAAGAGCSRVLLVKGCVDAWEPKVLRAG 237
>gi|301765370|ref|XP_002918107.1| PREDICTED: RNA methyltransferase-like protein 1-like [Ailuropoda
melanoleuca]
gi|281342377|gb|EFB17961.1| hypothetical protein PANDA_006496 [Ailuropoda melanoleuca]
Length = 423
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 101/150 (67%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K+ FFS+ + +KELP+ + +
Sbjct: 107 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLEYIKELPIDKLKGASLIK 166
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS-----LPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H + P + LPL ++CDN+RDPGN+G+I
Sbjct: 167 VKFEDIKDWSDLVTPQGIMGIFAKPDH-VKMTYPETQLRHLLPLLLICDNLRDPGNLGTI 225
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 226 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 255
>gi|225715396|gb|ACO13544.1| RNA methyltransferase-like protein 1A [Esox lucius]
Length = 329
Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 91/140 (65%), Gaps = 6/140 (4%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYK 62
+SR RE +G +++EG+R++ DAL A +MVFFS D L ELPL + +V ++
Sbjct: 145 RSRTFREHQGKILIEGRRLICDALAAGANPQMVFFSSLDRLSELPLDKLKRATLVKVKFE 204
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDP----ASLPLNIVCDNIRDPGNMGSILRVCA 118
+I++WSD+V P G+I IF P + P SLPL+++CDN+RDPGN+G+ILR
Sbjct: 205 DIKIWSDVVAPQGVIAIFSRPDPSQLTFPPDQRSQSLPLSLICDNVRDPGNLGTILRCAV 264
Query: 119 AVGARQVVCSRGCVDIYDNK 138
A G ++ ++GCVD+++ K
Sbjct: 265 AAGCHNILLTKGCVDVWEPK 284
>gi|427780749|gb|JAA55826.1| Putative spou rrna methylase family protein [Rhipicephalus
pulchellus]
Length = 421
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 104/149 (69%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP---EDVPQH 57
M+ +K +++REK ++LEGKR++ DALKA ++ + ++FS + ++ LPL ED +
Sbjct: 79 MMQLKMKRKREKLNKVLLEGKRLIADALKAGVECESIYFSLPENIEGLPLDTLREDQIK- 137
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA--SLPLNIVCDNIRDPGNMGSILR 115
+V YK +++WSD+ T PGI+G+F+ P+ + ++P++++ DN+RDPGNMG+++R
Sbjct: 138 KVFYKKMKIWSDMTTCPGIMGVFKKPSMDQIEFQRSGETIPVSVILDNVRDPGNMGTLIR 197
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
AA G Q++ S+GCVD ++ KV+RA A
Sbjct: 198 TAAAAGCSQLLLSKGCVDPWELKVLRAGA 226
>gi|289741955|gb|ADD19725.1| SPOU rRNA methylase family protein [Glossina morsitans morsitans]
Length = 388
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 99/154 (64%), Gaps = 11/154 (7%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD----ILKELPLPEDVPQ 56
M ++S+K+R+K +++EG+R++++AL+ L+LK + FSQ D I +E+ + + Q
Sbjct: 109 MTTVRSKKRRDKNRQIVIEGRRLILEALECGLRLKTILFSQRDQLAAIKEEVTVLQKAKQ 168
Query: 57 ---HRVDYKNIQLWSDLVTPPGIIGIFELPA----HPIASIDPASLPLNIVCDNIRDPGN 109
++V + ++++WS L TPPG++ IFE P S P LP+ +VCDNIRDP N
Sbjct: 169 TEIYKVPHHDLKIWSTLTTPPGVLAIFERPCSQHVRKTLSKVPPPLPITVVCDNIRDPNN 228
Query: 110 MGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+GSI+R CAA+ QVV + GC D +++K +R
Sbjct: 229 LGSIIRTCAALPCLQVVITIGCCDPWESKSLRGG 262
>gi|432891712|ref|XP_004075625.1| PREDICTED: RNA methyltransferase-like protein 1A-like [Oryzias
latipes]
Length = 449
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 94/143 (65%), Gaps = 4/143 (2%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYK 62
+SR RE +G ++LEG+R++ DAL A + VFFS D L+ELPL + +V ++
Sbjct: 135 RSRTFREHQGKILLEGRRLICDALHAGAMPQTVFFSTVDRLRELPLDKLKRAALVKVKFE 194
Query: 63 NIQLWSDLVTPPGIIGIFEL--PAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
I+LWSD+V P G+I IF P+ + S+ L+++CDNIRDPGN+G++LR AA
Sbjct: 195 EIKLWSDVVAPQGVIAIFSRSDPSRLNYANKGQSVGLSLICDNIRDPGNLGTMLRCAAAA 254
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++ ++GCVD ++ KV+RAA
Sbjct: 255 GCSSILLTKGCVDAWEPKVLRAA 277
>gi|449480312|ref|XP_002196211.2| PREDICTED: RNA methyltransferase-like protein 1 [Taeniopygia
guttata]
Length = 301
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 95/146 (65%), Gaps = 8/146 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYK 62
KS+K R+ G ++LEG R++ DAL+A + +FFS LK LP E +V ++
Sbjct: 108 KSKKFRDNHGKVLLEGHRLIKDALEAGAVPQTLFFSTVGHLKLLPEAEIKRASLVKVKFE 167
Query: 63 NIQLWSDLVTPPGIIGIFELP-----AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+I+ WSDLVTP G++GIF P ++P A + SLPL ++CDNIRDPGN+G+ILR
Sbjct: 168 DIKTWSDLVTPQGLLGIFSKPDPAKMSYPAAQLA-NSLPLLLICDNIRDPGNLGTILRSA 226
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 AGAGCEKVLLTKGCVDPWEPKVLRAG 252
>gi|195440808|ref|XP_002068232.1| GK13008 [Drosophila willistoni]
gi|194164317|gb|EDW79218.1| GK13008 [Drosophila willistoni]
Length = 409
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 99/155 (63%), Gaps = 12/155 (7%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL----KELPLPEDVPQ 56
M+ ++SRK+R+K +++EG+R++ +AL LK++ + FSQ + L +E+ L + Q
Sbjct: 133 MITVRSRKRRDKNRQIIIEGRRLIREALSCGLKMQTLIFSQKEQLALLREEVALAQQKTQ 192
Query: 57 ---HRVDYKNIQLWSDLVTPPGIIGIFELPAH---PIASIDP--ASLPLNIVCDNIRDPG 108
++V +++ WS LVTPPG++GIFE P+ A P +SLP+ +VCDNIR+P
Sbjct: 193 TKIYKVPQHDLKTWSTLVTPPGVMGIFERPSSRGLETAKTTPTSSSLPITVVCDNIREPN 252
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
N+GSI+R CAA+ QVV G D +++K +R
Sbjct: 253 NLGSIIRTCAALPCHQVVVIHGSCDPWESKALRGG 287
>gi|47227791|emb|CAG08954.1| unnamed protein product [Tetraodon nigroviridis]
Length = 437
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 32/170 (18%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN- 63
+SR RE +G ++LEG+R++ DAL A +MVFFS D L+ELPL + + KN
Sbjct: 103 RSRTFREHQGKILLEGRRLICDALDAGAVPQMVFFSTADRLRELPLDKLRRATLIKVKNE 162
Query: 64 -IQLWSDLVTPPGIIGIFELPAHPIASIDPA-SLPLNIVCDNIRDPGNMGSILRVCAAVG 121
I++WSDLVTP G+I IF P P+ D S+PL++VCDNIRDPGN+G++LR AA G
Sbjct: 163 DIKVWSDLVTPQGVIAIFSRP-DPLTFPDRRPSVPLSLVCDNIRDPGNLGTMLRCAAAAG 221
Query: 122 ARQVVCSR----------------------------GCVDIYDNKVIRAA 143
R V+ ++ GCVD+++ KV+RAA
Sbjct: 222 CRDVLLTKGISRIKKRASPTVRWVSLKLIPFFFKPTGCVDVWEPKVLRAA 271
>gi|312375375|gb|EFR22762.1| hypothetical protein AND_14238 [Anopheles darlingi]
Length = 407
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 93/151 (61%), Gaps = 10/151 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL---PEDVPQHRVD 60
+ SRK+RE++ L+LEG+R+++D A L+L+ V S +L EL L P+D P V+
Sbjct: 181 VSSRKRREREKMLVLEGRRLILDGCAAGLRLEAVVASDVKLLGELGLKSNPKDCPFFLVN 240
Query: 61 YKNIQLWSDLVTPPGIIGIFELP---AHPIASIDPAS----LPLNIVCDNIRDPGNMGSI 113
+ + WS L T PG+IG+F P A IA A LP+ +VCDNIR+P N+GS+
Sbjct: 241 RQTMMEWSSLTTSPGLIGVFAAPQNLAEVIARNSTAGGSKRLPVTVVCDNIREPNNLGSV 300
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
+R CAAV A++V+ +GC +D K +R A
Sbjct: 301 IRSCAAVSAQEVILLKGCAHPWDLKCLRGGA 331
>gi|195020532|ref|XP_001985214.1| GH16936 [Drosophila grimshawi]
gi|193898696|gb|EDV97562.1| GH16936 [Drosophila grimshawi]
Length = 410
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 96/154 (62%), Gaps = 11/154 (7%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL--PLPEDVPQH- 57
+ ++SRK+R+K +++EG+R++ +AL+ L++ +FFSQ D L L P+ + +H
Sbjct: 132 LTEVRSRKRRDKNKQIIIEGRRLIEEALECGLRMHALFFSQKDQLGLLREPVAQAQQEHN 191
Query: 58 ----RVDYKNIQLWSDLVTPPGIIGIFELPAH----PIASIDPASLPLNIVCDNIRDPGN 109
+V +++ WS LVTPPG++ +FE P+ + LP+ +VCDNIR+P N
Sbjct: 192 TMIYKVPQHDLKTWSALVTPPGLLALFERPSARGLLQQQQLGSEPLPITVVCDNIREPNN 251
Query: 110 MGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+GSI+R CAA+ QVV + GC D +++K +R
Sbjct: 252 LGSIIRTCAALPCTQVVVTHGCCDPWESKALRGG 285
>gi|157120535|ref|XP_001653652.1| hypothetical protein AaeL_AAEL009023 [Aedes aegypti]
gi|108874927|gb|EAT39152.1| AAEL009023-PA [Aedes aegypti]
Length = 462
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 65/151 (43%), Positives = 92/151 (60%), Gaps = 15/151 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW----DILKELPLPE--DVPQH 57
M SRK+RE K L++EGKR++ DA+ A L L+ V FS+ DI EL + +P H
Sbjct: 193 MTSRKRRELKSKLVVEGKRLINDAIDAGLLLETVIFSESCHLDDIRAELATLKLIQLPNH 252
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAH----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
+Q WSDLVT PG+IGIF+ P+ I + SLP+ +VCDN+R+P N+GSI
Sbjct: 253 V-----LQEWSDLVTSPGVIGIFQKPSDMSKIVIRNRTAESLPITVVCDNVREPNNLGSI 307
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
LR CA++ +V+ +GC +D K +R A
Sbjct: 308 LRSCASIPVDRVILLKGCTHPWDPKCLRGGA 338
>gi|195173298|ref|XP_002027429.1| GL20885 [Drosophila persimilis]
gi|194113281|gb|EDW35324.1| GL20885 [Drosophila persimilis]
Length = 405
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 15/158 (9%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD---ILKELPLPEDVPQH 57
+ ++SRK+R+K +++EG+R++ +AL+ LK+ + FSQ D +LKE H
Sbjct: 128 LTTVRSRKRRDKNRQIIIEGRRLIKEALQCGLKMSTLIFSQKDQLALLKEEVAQAQQETH 187
Query: 58 RVDYK----NIQLWSDLVTPPGIIGIFELPAHPIASIDPAS--------LPLNIVCDNIR 105
YK +++ WS LVTPPG++ +F+ P+ + A LP+ +VCDNIR
Sbjct: 188 TKIYKVPQHDLKTWSSLVTPPGLLAVFDRPSEKGLEKNLAEQERLGSQPLPITVVCDNIR 247
Query: 106 DPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+P N+GSI+R CAA+ QVV +RGC D +++K +R
Sbjct: 248 EPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGG 285
>gi|198463831|ref|XP_001352955.2| GA12757 [Drosophila pseudoobscura pseudoobscura]
gi|198151430|gb|EAL30456.2| GA12757 [Drosophila pseudoobscura pseudoobscura]
Length = 405
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 15/158 (9%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD---ILKELPLPEDVPQH 57
+ ++SRK+R+K +++EG+R++ +AL+ LK+ + FSQ D +LKE H
Sbjct: 128 LTTVRSRKRRDKNRQIIIEGRRLIKEALQCGLKMSTLIFSQKDQLALLKEEVAQAQQETH 187
Query: 58 RVDYK----NIQLWSDLVTPPGIIGIFELPAHPIASIDPAS--------LPLNIVCDNIR 105
YK +++ WS LVTPPG++ +F+ P+ + A LP+ +VCDNIR
Sbjct: 188 TKIYKVPQHDLKTWSSLVTPPGLLAVFDRPSEKGLEKNLAEQERLGSQPLPITVVCDNIR 247
Query: 106 DPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+P N+GSI+R CAA+ QVV +RGC D +++K +R
Sbjct: 248 EPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGG 285
>gi|195128039|ref|XP_002008474.1| GI11797 [Drosophila mojavensis]
gi|193920083|gb|EDW18950.1| GI11797 [Drosophila mojavensis]
Length = 412
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 94/154 (61%), Gaps = 13/154 (8%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK-------ELPLPED 53
+ ++SRK+ +K +++EG+R++ +AL++ LK+ +FFSQ D L + ++
Sbjct: 136 LTEVRSRKRHDKNKQIIVEGRRLIQEALQSGLKMLSLFFSQKDQLALLRDQVAQAQQEQN 195
Query: 54 VPQHRVDYKNIQLWSDLVTPPGIIGIFELPA----HPIASIDPASLPLNIVCDNIRDPGN 109
++V +++ WS LVTPPG++ IFE P DP LP+ +VCDNIR+P N
Sbjct: 196 TKIYKVPQHDLKTWSSLVTPPGLLAIFERPPPQGLQQRQDTDP--LPITVVCDNIREPNN 253
Query: 110 MGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+GSI+R CAAV QVV + GC D +++K +R
Sbjct: 254 LGSIIRTCAAVPCSQVVVTHGCCDPWESKALRGG 287
>gi|195591559|ref|XP_002085507.1| GD12269 [Drosophila simulans]
gi|194197516|gb|EDX11092.1| GD12269 [Drosophila simulans]
Length = 407
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 97/158 (61%), Gaps = 15/158 (9%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ---- 56
+ ++SRK+R+KK +++EG+R++ +AL+ LK++++ FSQ D L + V Q
Sbjct: 125 LTTVRSRKRRDKKQQIIVEGRRLIQEALQCGLKMEVLLFSQKDQLALVKEEVGVAQLETG 184
Query: 57 ---HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS--------LPLNIVCDNIR 105
++V +++ WS LVTPPG++ IF+ P+ + A LP+ +VCDNIR
Sbjct: 185 TKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQRLGSQPLPITVVCDNIR 244
Query: 106 DPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+P N+GSI+R CAA+ QVV + GC D +++K +R
Sbjct: 245 EPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGG 282
>gi|194874184|ref|XP_001973355.1| GG13393 [Drosophila erecta]
gi|190655138|gb|EDV52381.1| GG13393 [Drosophila erecta]
Length = 405
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 97/163 (59%), Gaps = 25/163 (15%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL----KELPLPE---- 52
+ ++SRK+R+K +++EG+R++ +AL+ LK++ + FSQ D L +E+ + +
Sbjct: 125 LTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEALLFSQKDQLALVKEEVGMAQLGTG 184
Query: 53 ----DVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS--------LPLNIV 100
VPQH +++ WS LVTPPG++GIF+ P+ + A P+ +V
Sbjct: 185 TKIYKVPQH-----DLKTWSSLVTPPGLMGIFDRPSDKGLEKNLAEQQRLGSQPFPITVV 239
Query: 101 CDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
CDNIR+P N+GSI+R C A+ QVV + GC D +++K +R
Sbjct: 240 CDNIREPNNLGSIIRTCGALPCSQVVVTHGCCDPWESKALRGG 282
>gi|24666840|ref|NP_649130.2| CG14100 [Drosophila melanogaster]
gi|74871275|sp|Q9VW14.1|RMTL1_DROME RecName: Full=RNA methyltransferase-like protein 1 homolog
gi|7293773|gb|AAF49141.1| CG14100 [Drosophila melanogaster]
gi|363238589|gb|AEW12899.1| FI17114p1 [Drosophila melanogaster]
Length = 407
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 95/158 (60%), Gaps = 15/158 (9%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ---- 56
+ ++SRK+R+K +++EG+R++ +AL+ LK++++ FSQ D L + V Q
Sbjct: 125 LTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEVLLFSQKDQLALVKEEVGVAQVETG 184
Query: 57 ---HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS--------LPLNIVCDNIR 105
++V +++ WS LVTPPG++ IF+ P+ + A P+ +VCDNIR
Sbjct: 185 TKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQRLGSQPFPITVVCDNIR 244
Query: 106 DPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+P N+GSI+R CAA+ QVV + GC D +++K +R
Sbjct: 245 EPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGG 282
>gi|17945288|gb|AAL48701.1| RE14730p [Drosophila melanogaster]
Length = 386
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 95/158 (60%), Gaps = 15/158 (9%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ---- 56
+ ++SRK+R+K +++EG+R++ +AL+ LK++++ FSQ D L + V Q
Sbjct: 104 LTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEVLLFSQKDQLALVKEEVGVAQVETG 163
Query: 57 ---HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS--------LPLNIVCDNIR 105
++V +++ WS LVTPPG++ IF+ P+ + A P+ +VCDNIR
Sbjct: 164 TKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQRLGSQPFPITVVCDNIR 223
Query: 106 DPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+P N+GSI+R CAA+ QVV + GC D +++K +R
Sbjct: 224 EPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGG 261
>gi|395536294|ref|XP_003770155.1| PREDICTED: RNA methyltransferase-like protein 1 [Sarcophilus
harrisii]
Length = 335
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 6/130 (4%)
Query: 20 GKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYKNIQLWSDLVTPPGII 77
G+R++ DAL+A + + VFFS+ + +KELP + +V + I+ WSDLV P GI+
Sbjct: 22 GRRLMADALRAGAQPQTVFFSRLEYVKELPGDKLKGASLVKVKFDEIKEWSDLVAPQGIM 81
Query: 78 GIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVD 133
GIF P H SLPL ++CDN+RDPGN+G+ILR A G +V+ ++GCVD
Sbjct: 82 GIFAKPDHAKMKFPETQLQHSLPLVLICDNLRDPGNLGTILRSAAGAGCCKVLLTKGCVD 141
Query: 134 IYDNKVIRAA 143
++ KV+RA
Sbjct: 142 AWEPKVLRAG 151
>gi|347970319|ref|XP_313427.5| AGAP003655-PA [Anopheles gambiae str. PEST]
gi|333468877|gb|EAA08963.5| AGAP003655-PA [Anopheles gambiae str. PEST]
Length = 461
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 8/152 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDV---PQH 57
M+ + SRK RE++ L+LEG+R+++D +A L+L+ + S +L EL + P
Sbjct: 179 MMLIGSRKNRERERMLVLEGRRLIMDGYQAGLRLEAIVTSDVKLLAELTFRAKLKACPIF 238
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGS 112
V + + WS L T PG+IGIF P++ + LP+ +VCDNIR+P N+GS
Sbjct: 239 LVKRQTMMEWSSLTTSPGLIGIFGEPSNMSELVTRNATGSKRLPVTVVCDNIREPNNLGS 298
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
I+R CAAV R+V+ +GC +D K +R A
Sbjct: 299 IVRSCAAVSVREVILLKGCAHPWDLKCLRGGA 330
>gi|194751485|ref|XP_001958057.1| GF10725 [Drosophila ananassae]
gi|190625339|gb|EDV40863.1| GF10725 [Drosophila ananassae]
Length = 421
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 97/163 (59%), Gaps = 25/163 (15%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL----KELPLPED--- 53
+ ++S+K+R+K ++LEG+R++ +AL+ LK++ + FSQ D L +E+ +
Sbjct: 136 LTTVRSKKRRDKNRQIILEGRRLIQEALQCGLKMQTLLFSQKDQLALVKEEVGKAQQGTG 195
Query: 54 -----VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS--------LPLNIV 100
VPQH +++ WS LVTPPG++ IF+ P+ + A LP+ +V
Sbjct: 196 SKIYKVPQH-----DLKTWSSLVTPPGLMAIFDRPSDKGLESNLAEQERVGTKPLPVTVV 250
Query: 101 CDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
CDNIR+P N+GSI+R CAA+ QVV + GC D +++K +R
Sbjct: 251 CDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGG 293
>gi|195496211|ref|XP_002095597.1| GE22485 [Drosophila yakuba]
gi|194181698|gb|EDW95309.1| GE22485 [Drosophila yakuba]
Length = 407
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 97/163 (59%), Gaps = 25/163 (15%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL----KELPLPE---- 52
+ ++SRK+R+K +++EG+R++ +AL+ LK++ + FSQ + L +E+ +
Sbjct: 125 LTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEALLFSQKEQLALVKEEVGFAQLETG 184
Query: 53 ----DVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS--------LPLNIV 100
VPQH +++ WS LVTPPG++ IF+ P+ + A LP+ +V
Sbjct: 185 TKIYKVPQH-----DLKTWSSLVTPPGLMAIFDRPSDKGLDKNLAEQQRLGSEPLPITVV 239
Query: 101 CDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
CDNIR+P N+GSI+R CAA+ QVV + GC D +++K +R
Sbjct: 240 CDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGG 282
>gi|255652983|ref|NP_001157404.1| RNA methyltransferase-like protein 1B [Danio rerio]
Length = 449
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--RVDYKN 63
S+K RE + ++LEGK ++ AL A + + ++FS D L+ELPL + + +V ++
Sbjct: 136 SKKLREHQ--VVLEGKHLVCSALDAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMED 193
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSILRVCAA 119
Q+WS+L T II IF+ P + ++PL ++CD +RDPGN+GS+LR AA
Sbjct: 194 AQVWSELDTSQEIIAIFKRPEASRLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAA 253
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V+ ++GCVDI++ KV+RAA
Sbjct: 254 AGCHSVLLTKGCVDIWELKVLRAA 277
>gi|160358744|sp|A1L2E4.2|RML1B_DANRE RecName: Full=RNA methyltransferase-like protein 1B
Length = 445
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--RVDYKN 63
S+K RE + ++LEGK ++ AL A + + ++FS D L+ELPL + + +V ++
Sbjct: 136 SKKLREHQ--VVLEGKHLVCSALDAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMED 193
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSILRVCAA 119
Q+WS+L T II IF+ P + ++PL ++CD +RDPGN+GS+LR AA
Sbjct: 194 AQVWSELDTSQEIIAIFKRPEASRLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAA 253
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V+ ++GCVDI++ KV+RAA
Sbjct: 254 AGCHSVLLTKGCVDIWELKVLRAA 277
>gi|120537815|gb|AAI29485.1| Rnmtl1-b protein [Danio rerio]
Length = 448
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--RVDYKN 63
S+K RE + ++LEGK ++ AL A + + ++FS D L+ELPL + + +V ++
Sbjct: 139 SKKLREHQ--VVLEGKHLVCSALDAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMED 196
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSILRVCAA 119
Q+WS+L T II IF+ P + ++PL ++CD +RDPGN+GS+LR AA
Sbjct: 197 AQVWSELDTSQEIIAIFKRPEASRLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAA 256
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V+ ++GCVDI++ KV+RAA
Sbjct: 257 AGCHSVLLTKGCVDIWELKVLRAA 280
>gi|195354200|ref|XP_002043587.1| GM17520 [Drosophila sechellia]
gi|194127755|gb|EDW49798.1| GM17520 [Drosophila sechellia]
Length = 407
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 86/143 (60%), Gaps = 15/143 (10%)
Query: 16 LMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ-------HRVDYKNIQLWS 68
+++EG+R++ +AL+ LK++++ FSQ D L + V Q ++V +++ WS
Sbjct: 140 IIVEGRRLIQEALQCGLKMEVLLFSQKDQLALVKEDVGVAQLETGTKIYKVPQHDLKTWS 199
Query: 69 DLVTPPGIIGIFELPAHPIASIDPAS--------LPLNIVCDNIRDPGNMGSILRVCAAV 120
LVTPPG++ IF+ P+ + A LP+ +VCDNIR+P N+GSI+R CAA+
Sbjct: 200 SLVTPPGLMAIFDRPSDKGLEKNLAEQQRLGSQPLPITVVCDNIREPNNLGSIIRTCAAL 259
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
QVV + GC D +++K +R
Sbjct: 260 PCSQVVVTHGCCDPWESKALRGG 282
>gi|170047080|ref|XP_001851065.1| Rnmtl1 protein [Culex quinquefasciatus]
gi|167869628|gb|EDS33011.1| Rnmtl1 protein [Culex quinquefasciatus]
Length = 446
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 86/145 (59%), Gaps = 4/145 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+KSRK+RE K ++LEGKR++ D ++A L ++ F+ L +L + + V +V+
Sbjct: 180 VKSRKRRELKCKMVLEGKRLIKDGIEAGLSTDIIVFNDVTKLDDLKIDKSVNLVQVERNV 239
Query: 64 IQLWSDLVTPPGIIGIFELPAH----PIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+Q WS + T PG+IGIF P I + LP+ +VCDNIR+P N+GSI+R AA
Sbjct: 240 MQEWSSVTTCPGLIGIFRKPKDMNKIVIQNRSLIPLPITVVCDNIREPNNLGSIIRSSAA 299
Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
+ ++V +GC +D K +R A
Sbjct: 300 IPTGRIVLLKGCTCPWDPKCLRGAT 324
>gi|156386580|ref|XP_001633990.1| predicted protein [Nematostella vectensis]
gi|156221067|gb|EDO41927.1| predicted protein [Nematostella vectensis]
Length = 274
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL----KELPLPEDVPQHRVDYK 62
R R++ ++LEG RI+ DAL AN++ +F+S +++ +LP VP VD K
Sbjct: 1 RSYRDRHNRILLEGLRIVHDALLANMEPITIFYSNKNLIDKLTSKLPSRYFVP---VDDK 57
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ +TPPGI+G+F+ P + I+ LPL ++CD ++DP N+G+I+R CAA G
Sbjct: 58 TMKNLLTALTPPGIVGVFKKPCSQL-KIESNVLPLTVICDRVKDPSNLGTIVRTCAAAGC 116
Query: 123 RQVVCSRGCVDIYDNKVIRAAA 144
+ ++ + D++D KV+R A
Sbjct: 117 QALITTEYSTDLWDPKVLRGGA 138
>gi|256070798|ref|XP_002571729.1| rna methyltransferase-related [Schistosoma mansoni]
Length = 407
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL-PLPEDVPQHRVDYKNIQ 65
+ + K ++LEG +++ DAL K +FFS D+L+++ L + + V ++ +
Sbjct: 94 KNESRKYPAIILEGSKLISDALATGAKATSLFFSSQDVLQKVGDLSNVLNIYYVKHQVMG 153
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPAS--LPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S L +PPG+I +FELP A LP+ ++ D I DPGNMGS++R A++G
Sbjct: 154 RISSLQSPPGVIALFELPQQDCFKRKNAKFCLPVTLILDRINDPGNMGSLIRSGASLGLN 213
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++ ++G V+I++ KVIRA
Sbjct: 214 SILVTKGSVNIWNEKVIRAG 233
>gi|360043146|emb|CCD78558.1| rna methyltransferase-related [Schistosoma mansoni]
Length = 407
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL-PLPEDVPQHRVDYKNIQ 65
+ + K ++LEG +++ DAL K +FFS D+L+++ L + + V ++ +
Sbjct: 94 KNESRKYPAIILEGSKLISDALATGAKATSLFFSSQDVLQKVGDLSNVLNIYYVKHQVMG 153
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPAS--LPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S L +PPG+I +FELP A LP+ ++ D I DPGNMGS++R A++G
Sbjct: 154 RISSLQSPPGVIALFELPQQDCFKRKNAKFCLPVTLILDRINDPGNMGSLIRSGASLGLN 213
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++ ++G V+I++ KVIRA
Sbjct: 214 SILVTKGSVNIWNEKVIRAG 233
>gi|425738665|ref|ZP_18856923.1| RNA methyltransferase [Staphylococcus massiliensis S46]
gi|425479012|gb|EKU46193.1| RNA methyltransferase [Staphylococcus massiliensis S46]
Length = 246
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +K R+ +G ++LEG ++++A + ++++ +F + D++ E + + + ++
Sbjct: 18 LKRKKVRDAEGKVLLEGVHLIVEAFQNQIEIEQLFVVREDLIHEDIIHKAQEVYEINLDI 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ SD VTP G+ + + P + +A + ++ D ++DPGN+G+++R A G
Sbjct: 78 AEALSDTVTPQGVFAVIQKPTYEVADKNRV-----LLVDRVQDPGNLGTMIRTADAAGYD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V SRG VD Y +KV+RA+
Sbjct: 133 LIVISRGTVDPYQDKVLRAS 152
>gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase SpoU [Bacillus cellulosilyticus DSM
2522]
gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
2522]
Length = 250
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP---EDVPQHRVD 60
+ SRK REK G ++EG ++ +ALKA + +K + D+ KE+P+ +VPQ V
Sbjct: 18 LHSRKGREKTGLFLVEGVHLIEEALKAFIHMKELVI---DVDKEIPVEWKVSNVPQVFVT 74
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN----IVCDNIRDPGNMGSILRV 116
K ++ + TP G + I ELP D ++PL + D ++DPGN+G+I+R
Sbjct: 75 NKVMKEICETETPQGFVAICELP-------DNKNVPLERGKFLFLDGLQDPGNVGAIIRT 127
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
A G VV G VD ++ KVIRA
Sbjct: 128 ADAAGINGVVLGEGTVDPFNGKVIRAT 154
>gi|435854748|ref|YP_007316067.1| rRNA methylase [Halobacteroides halobius DSM 5150]
gi|433671159|gb|AGB41974.1| rRNA methylase [Halobacteroides halobius DSM 5150]
Length = 265
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 14/153 (9%)
Query: 3 YMKS---RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQH 57
Y++S +K R + +LEG RI+ +AL ++ +F+S + + + L E + Q
Sbjct: 13 YLRSLYKKKYRRQNQQFVLEGIRIIEEALNEQADIRQIFYSDYLLRNQRGQELLEGLKQ- 71
Query: 58 RVDYKNIQLWSDLV-------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNM 110
D K I++ DL+ +P GI+ I + H + + + L I+ D I+DPGN+
Sbjct: 72 -ADNKVIKITDDLLQKVADTTSPQGILAIVQQVNHDLNNFLAGNKELFIIADRIQDPGNL 130
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+I+R A GA V+ ++G V +Y+ KV+RA
Sbjct: 131 GTIIRTADAAGASGVITTKGTVSLYNQKVLRAT 163
>gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 265
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHESEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KVIR+
Sbjct: 144 AVVLGEGCVDVYNSKVIRST 163
>gi|229163553|ref|ZP_04291503.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
gi|228619935|gb|EEK76811.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
Length = 265
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYMVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|384188636|ref|YP_005574532.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 254
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 133 AVVLGEGCVDVYNSKVLRST 152
>gi|434377716|ref|YP_006612360.1| 23S rRNA methyltransferase [Bacillus thuringiensis HD-789]
gi|401876273|gb|AFQ28440.1| 23S rRNA methyltransferase [Bacillus thuringiensis HD-789]
Length = 254
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 133 AVVLGEGCVDVYNSKVLRST 152
>gi|402563924|ref|YP_006606648.1| 23S rRNA methyltransferase [Bacillus thuringiensis HD-771]
gi|401792576|gb|AFQ18615.1| 23S rRNA methyltransferase [Bacillus thuringiensis HD-771]
Length = 254
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 133 AVVLGEGCVDVYNSKVLRST 152
>gi|218899716|ref|YP_002448127.1| TrmH family RNA methyltransferase [Bacillus cereus G9842]
gi|228903079|ref|ZP_04067216.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
gi|218543852|gb|ACK96246.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
gi|228856565|gb|EEN01088.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
Length = 265
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423358351|ref|ZP_17335854.1| hypothetical protein IC1_00331 [Bacillus cereus VD022]
gi|401086038|gb|EJP94270.1| hypothetical protein IC1_00331 [Bacillus cereus VD022]
Length = 265
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423560929|ref|ZP_17537205.1| hypothetical protein II5_00333 [Bacillus cereus MSX-A1]
gi|401202774|gb|EJR09624.1| hypothetical protein II5_00333 [Bacillus cereus MSX-A1]
Length = 265
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DELQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
gi|365158656|ref|ZP_09354848.1| hypothetical protein HMPREF1014_00311 [Bacillus sp. 7_6_55CFAA_CT2]
gi|410676958|ref|YP_006929329.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
gi|423386056|ref|ZP_17363312.1| hypothetical protein ICE_03802 [Bacillus cereus BAG1X1-2]
gi|423411653|ref|ZP_17388773.1| hypothetical protein IE1_00957 [Bacillus cereus BAG3O-2]
gi|423426687|ref|ZP_17403718.1| hypothetical protein IE5_04376 [Bacillus cereus BAG3X2-2]
gi|423432560|ref|ZP_17409564.1| hypothetical protein IE7_04376 [Bacillus cereus BAG4O-1]
gi|423502763|ref|ZP_17479355.1| hypothetical protein IG1_00329 [Bacillus cereus HD73]
gi|423527588|ref|ZP_17504033.1| hypothetical protein IGE_01140 [Bacillus cereus HuB1-1]
gi|423582774|ref|ZP_17558885.1| hypothetical protein IIA_04289 [Bacillus cereus VD014]
gi|423634558|ref|ZP_17610211.1| hypothetical protein IK7_00967 [Bacillus cereus VD156]
gi|449091514|ref|YP_007423955.1| RNA methyltransferase, TrmH family [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452201031|ref|YP_007481112.1| rRNA methylase [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
gi|363626529|gb|EHL77512.1| hypothetical protein HMPREF1014_00311 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104978|gb|EJQ12946.1| hypothetical protein IE1_00957 [Bacillus cereus BAG3O-2]
gi|401110253|gb|EJQ18162.1| hypothetical protein IE5_04376 [Bacillus cereus BAG3X2-2]
gi|401115693|gb|EJQ23540.1| hypothetical protein IE7_04376 [Bacillus cereus BAG4O-1]
gi|401211589|gb|EJR18336.1| hypothetical protein IIA_04289 [Bacillus cereus VD014]
gi|401280537|gb|EJR86457.1| hypothetical protein IK7_00967 [Bacillus cereus VD156]
gi|401634707|gb|EJS52470.1| hypothetical protein ICE_03802 [Bacillus cereus BAG1X1-2]
gi|402452957|gb|EJV84767.1| hypothetical protein IGE_01140 [Bacillus cereus HuB1-1]
gi|402460002|gb|EJV91730.1| hypothetical protein IG1_00329 [Bacillus cereus HD73]
gi|409176087|gb|AFV20392.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
gi|449025271|gb|AGE80434.1| RNA methyltransferase, TrmH family [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452106424|gb|AGG03364.1| rRNA methylase [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423417528|ref|ZP_17394617.1| hypothetical protein IE3_01000 [Bacillus cereus BAG3X2-1]
gi|401107807|gb|EJQ15752.1| hypothetical protein IE3_01000 [Bacillus cereus BAG3X2-1]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|228967659|ref|ZP_04128680.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228792035|gb|EEM39616.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
str. T04001]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|229019786|ref|ZP_04176589.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
gi|229026013|ref|ZP_04182397.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
gi|228735294|gb|EEL85905.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
gi|228741511|gb|EEL91708.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423612737|ref|ZP_17588598.1| hypothetical protein IIM_03452 [Bacillus cereus VD107]
gi|401244725|gb|EJR51084.1| hypothetical protein IIM_03452 [Bacillus cereus VD107]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKQEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
gi|407707078|ref|YP_006830663.1| hypothetical protein MC28_3842 [Bacillus thuringiensis MC28]
gi|423377594|ref|ZP_17354878.1| hypothetical protein IC9_00947 [Bacillus cereus BAG1O-2]
gi|423440701|ref|ZP_17417607.1| hypothetical protein IEA_01031 [Bacillus cereus BAG4X2-1]
gi|423449129|ref|ZP_17426008.1| hypothetical protein IEC_03737 [Bacillus cereus BAG5O-1]
gi|423463766|ref|ZP_17440534.1| hypothetical protein IEK_00953 [Bacillus cereus BAG6O-1]
gi|423533118|ref|ZP_17509536.1| hypothetical protein IGI_00950 [Bacillus cereus HuB2-9]
gi|423541618|ref|ZP_17518009.1| hypothetical protein IGK_03710 [Bacillus cereus HuB4-10]
gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
gi|401128578|gb|EJQ36267.1| hypothetical protein IEC_03737 [Bacillus cereus BAG5O-1]
gi|401171151|gb|EJQ78384.1| hypothetical protein IGK_03710 [Bacillus cereus HuB4-10]
gi|401638443|gb|EJS56193.1| hypothetical protein IC9_00947 [Bacillus cereus BAG1O-2]
gi|402418832|gb|EJV51121.1| hypothetical protein IEA_01031 [Bacillus cereus BAG4X2-1]
gi|402421310|gb|EJV53570.1| hypothetical protein IEK_00953 [Bacillus cereus BAG6O-1]
gi|402464351|gb|EJV96047.1| hypothetical protein IGI_00950 [Bacillus cereus HuB2-9]
gi|407384763|gb|AFU15264.1| RNA methyltransferase, TrmH [Bacillus thuringiensis MC28]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHESEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|75761064|ref|ZP_00741063.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491448|gb|EAO54665.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 202
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423389134|ref|ZP_17366360.1| hypothetical protein ICG_00982 [Bacillus cereus BAG1X1-3]
gi|401642409|gb|EJS60120.1| hypothetical protein ICG_00982 [Bacillus cereus BAG1X1-3]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVDEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|399027548|ref|ZP_10729035.1| rRNA methylase [Flavobacterium sp. CF136]
gi|398074972|gb|EJL66101.1| rRNA methylase [Flavobacterium sp. CF136]
Length = 242
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR EG +++ + L++N +L+ ++ +Q D K E + + +
Sbjct: 13 LHQKKQRFANQLFFAEGVKVIQELLQSNFELEHLYTTQNDFEK----VEFSKRTSITEQE 68
Query: 64 IQLWSDLVTPPGIIGIFELP-AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ S L TP + +F++P +PI ID L + D+IRDPGN+G+ILR+C G
Sbjct: 69 LKKISALSTPNSCLAVFKIPDENPI--IDSG---LILALDDIRDPGNLGTILRLCDWFGI 123
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+Q+VCS+ VDIY+ KV++A
Sbjct: 124 QQIVCSKETVDIYNPKVVQAT 144
>gi|339234319|ref|XP_003382276.1| putative tRNA/rRNA methyltransferase [Trichinella spiralis]
gi|316978725|gb|EFV61669.1| putative tRNA/rRNA methyltransferase [Trichinella spiralis]
Length = 186
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 48 LPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS--LPLNIVCDNIR 105
+PLP++V + R+ + WS L +PPGI+ + + P + S S LPL ++CD ++
Sbjct: 1 MPLPDEVDKVRISTHRMNTWSLLDSPPGIMAVAKKPTYEEISKSKNSHILPLTVICDGLK 60
Query: 106 DPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
DPGN+GS++R AA+G R+++ GC ++ KV+R+A+
Sbjct: 61 DPGNVGSLIRSLAAMGCRRILAVTGCCYFWEVKVLRSAS 99
>gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHESEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423547849|ref|ZP_17524207.1| hypothetical protein IGO_04284 [Bacillus cereus HuB5-5]
gi|423622362|ref|ZP_17598140.1| hypothetical protein IK3_00960 [Bacillus cereus VD148]
gi|401178286|gb|EJQ85466.1| hypothetical protein IGO_04284 [Bacillus cereus HuB5-5]
gi|401261502|gb|EJR67662.1| hypothetical protein IK3_00960 [Bacillus cereus VD148]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423484127|ref|ZP_17460817.1| hypothetical protein IEQ_03905 [Bacillus cereus BAG6X1-2]
gi|401139153|gb|EJQ46716.1| hypothetical protein IEQ_03905 [Bacillus cereus BAG6X1-2]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423437996|ref|ZP_17414977.1| hypothetical protein IE9_04177 [Bacillus cereus BAG4X12-1]
gi|401119609|gb|EJQ27420.1| hypothetical protein IE9_04177 [Bacillus cereus BAG4X12-1]
Length = 265
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEVI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|333923395|ref|YP_004496975.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333748956|gb|AEF94063.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 264
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI-------LKELPLPEDVPQ 56
+ R REK+ L++EG R++ +AL++ + + ++ + L EL +
Sbjct: 17 LAQRNFREKERKLVVEGVRLVEEALQSGWRTESFVYTYEAVQNERGSRLLELAQRKCAQT 76
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
++V + SD TP G++ + P + +A + P PL +V D ++DPGN+G+I+R
Sbjct: 77 YQVTAHIMSQLSDTETPQGVLAVLWQPDYVLADVLPGQPPLVVVVDGVQDPGNLGTIVRS 136
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA VV +G VDIY+ K IRA
Sbjct: 137 ADAAGASGVVLLKGTVDIYNPKTIRAT 163
>gi|217962043|ref|YP_002340613.1| TrmH family RNA methyltransferase [Bacillus cereus AH187]
gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
gi|375286558|ref|YP_005106997.1| 23S rRNA methyltransferase [Bacillus cereus NC7401]
gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
gi|358355085|dbj|BAL20257.1| 23S rRNA methyltransferase [Bacillus cereus NC7401]
Length = 254
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHEKEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 133 AVVLGEGCVDVYNSKVLRST 152
>gi|384182370|ref|YP_005568132.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 254
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHEKEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 133 AVVLGEGCVDVYNSKVLRST 152
>gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
gi|423355045|ref|ZP_17332670.1| hypothetical protein IAU_03119 [Bacillus cereus IS075]
gi|423373487|ref|ZP_17350826.1| hypothetical protein IC5_02542 [Bacillus cereus AND1407]
gi|423570791|ref|ZP_17547036.1| hypothetical protein II7_04012 [Bacillus cereus MSX-A12]
gi|423573760|ref|ZP_17549879.1| hypothetical protein II9_00981 [Bacillus cereus MSX-D12]
gi|423603759|ref|ZP_17579652.1| hypothetical protein IIK_00340 [Bacillus cereus VD102]
gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
gi|401085222|gb|EJP93465.1| hypothetical protein IAU_03119 [Bacillus cereus IS075]
gi|401096451|gb|EJQ04498.1| hypothetical protein IC5_02542 [Bacillus cereus AND1407]
gi|401203418|gb|EJR10257.1| hypothetical protein II7_04012 [Bacillus cereus MSX-A12]
gi|401213859|gb|EJR20596.1| hypothetical protein II9_00981 [Bacillus cereus MSX-D12]
gi|401246523|gb|EJR52870.1| hypothetical protein IIK_00340 [Bacillus cereus VD102]
Length = 265
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|83590588|ref|YP_430597.1| tRNA/rRNA methyltransferase SpoU [Moorella thermoacetica ATCC
39073]
gi|83573502|gb|ABC20054.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC
39073]
Length = 272
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ R REKKG ++EG +L +AL+A L++V S R Y+
Sbjct: 18 LQDRSWREKKGLYLIEGIHLLEEALQAGTSLEVVLHSPRIFTTSRGEKLVAGLQRAGYQC 77
Query: 64 IQLWSDLV-------TPPGIIGIFELPAHPIASIDPASLPLN-----IVCDNIRDPGNMG 111
+ + +L+ TPPGI+ + + A +A + + PL+ I+ I+DPGN+G
Sbjct: 78 LAVTEELMAGISTTMTPPGIVAVAPMQAKNLAELLAVTSPLHSPPLFIIAAGIQDPGNLG 137
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+I R GA ++ +RGCVD Y+ KV+R+A
Sbjct: 138 TIWRTALGAGATGLILTRGCVDPYNPKVVRSA 169
>gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
Length = 265
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423406020|ref|ZP_17383169.1| hypothetical protein ICY_00705 [Bacillus cereus BAG2X1-3]
gi|401660689|gb|EJS78167.1| hypothetical protein ICY_00705 [Bacillus cereus BAG2X1-3]
Length = 265
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + +
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIIPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423395160|ref|ZP_17372361.1| hypothetical protein ICU_00854 [Bacillus cereus BAG2X1-1]
gi|401655931|gb|EJS73459.1| hypothetical protein ICU_00854 [Bacillus cereus BAG2X1-1]
Length = 265
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + +
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIIPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
Length = 265
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+K+G +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKQGLFFVEGFHLVEEALKAGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
Length = 265
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + ++++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVAVELIVSDQTDLPKDWTVS-DVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E + D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVDLTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|384098216|ref|ZP_09999335.1| tRNA/rRNA methyltransferase SpoU [Imtechella halotolerans K1]
gi|383836362|gb|EID75775.1| tRNA/rRNA methyltransferase SpoU [Imtechella halotolerans K1]
Length = 241
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R + + EGK+++ + L A+ L +F + D ++ P +H + +
Sbjct: 13 LQQKKYRNQHKLFIAEGKKVIEEFLFADFSLHSLFTTNEDFVELSP----SKRHEISEVD 68
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPA-SLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ S L TP + IFE+P S++P+ + L + D +RDPGN+G+I+R+C G
Sbjct: 69 LKKISCLTTPNASLAIFEIP-----SMEPSENTGLIVALDQVRDPGNLGTIIRLCDWFGV 123
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+++CS VD Y+ KV++A
Sbjct: 124 NKIICSMNTVDCYNPKVVQAT 144
>gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
Length = 254
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALK + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKTGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 133 AVVLGEGCVDVYNSKVLRST 152
>gi|423640369|ref|ZP_17615987.1| hypothetical protein IK9_00314 [Bacillus cereus VD166]
gi|401281285|gb|EJR87198.1| hypothetical protein IK9_00314 [Bacillus cereus VD166]
Length = 265
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALK + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKTGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|424835783|ref|ZP_18260442.1| RNA methyltransferase, TrmH family [Clostridium sporogenes PA 3679]
gi|365977653|gb|EHN13751.1| RNA methyltransferase, TrmH family [Clostridium sporogenes PA 3679]
Length = 259
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
+K +K R + ++EG R +ALK+N + VF + ++ K+ + D+ +
Sbjct: 16 LKEKKYRTQNKSFIVEGFRFFEEALKSNSSINKVFIEEKSLNKLEELYKKYNINNDIETY 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V+Y ++ S+ P GI+ + ++ I+ D ++DPGNMG+I+R
Sbjct: 76 VVNYSVLKSISNTENPQGIVAVINYFRTEKLNLQNG---FYILVDKVQDPGNMGNIIRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA ++ ++G VDIY+ K +R+
Sbjct: 133 HAAGALGIITTKGTVDIYNEKTLRST 158
>gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
Length = 265
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + +DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-DDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHESEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 144 AVVLGEGCVDAYNSKVLRST 163
>gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
Length = 257
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 21 LQTKKERDKKGLFFVEGFHLVEEALKAGVITELIVSDQTDLPKDWTVT-DVEMYIVPEAI 79
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E IA D L L D ++DPGN+G+I+R A G
Sbjct: 80 VKVLRETETTQGVFAVCEKHEKEIALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 135
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 136 AVVLGEGCVDAYNSKVLRST 155
>gi|423615052|ref|ZP_17590886.1| hypothetical protein IIO_00378 [Bacillus cereus VD115]
gi|401261908|gb|EJR68059.1| hypothetical protein IIO_00378 [Bacillus cereus VD115]
Length = 265
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+K+G +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKQGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
gi|423584911|ref|ZP_17560998.1| hypothetical protein IIE_00323 [Bacillus cereus VD045]
gi|423631277|ref|ZP_17607024.1| hypothetical protein IK5_04127 [Bacillus cereus VD154]
gi|423650459|ref|ZP_17626029.1| hypothetical protein IKA_04246 [Bacillus cereus VD169]
gi|423657504|ref|ZP_17632803.1| hypothetical protein IKG_04492 [Bacillus cereus VD200]
gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401235103|gb|EJR41576.1| hypothetical protein IIE_00323 [Bacillus cereus VD045]
gi|401263850|gb|EJR69966.1| hypothetical protein IK5_04127 [Bacillus cereus VD154]
gi|401281618|gb|EJR87524.1| hypothetical protein IKA_04246 [Bacillus cereus VD169]
gi|401289060|gb|EJR94781.1| hypothetical protein IKG_04492 [Bacillus cereus VD200]
Length = 265
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALK + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKTGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
Length = 257
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 21 LQTKKERDKKGLFFVEGFHLVEEALKAGVITELIVSDQTDLPKDWTVT-DVEMYIVPEAI 79
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E IA D L L D ++DPGN+G+I+R A G
Sbjct: 80 VKVLRETETTQGVFAVCEKHEKEIALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 135
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 136 AVVLGEGCVDAYNSKVLRST 155
>gi|402817996|ref|ZP_10867582.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus alvei DSM 29]
gi|402504508|gb|EJW15037.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus alvei DSM 29]
Length = 277
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 20/159 (12%)
Query: 2 VYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP-EDVPQHRVD 60
V +K RK R ++G ++EG ++ +AL++ L++ +V + D+ K +P E H +
Sbjct: 19 VQLKERKHRNREGLFIVEGIHLVQEALRSGLQVDVVAY---DLEKGIPQELESFHNHAEN 75
Query: 61 YK-----NIQLW-----------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNI 104
N W SD TP +I I P+ + S+ + L +V D +
Sbjct: 76 ASPLGRGNNTEWIAVSDAIIRKCSDTETPQPVIAIAHKPSASVDSLLASPNSLVVVVDGV 135
Query: 105 RDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+DPGN+G+I+R AVGA VV +G VD+Y+ K IR+
Sbjct: 136 QDPGNLGTIIRTADAVGADGVVIGKGTVDLYNAKTIRST 174
>gi|334135267|ref|ZP_08508759.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF7]
gi|333607089|gb|EGL18411.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF7]
Length = 273
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 17/147 (11%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
RK R+K G ++EG ++ +A++A ++ + + + LP + H
Sbjct: 27 RKGRQKAGAFLIEGIHLVEEAVRAGAPVRTLVYE-----ADKGLPGTLADHAEAAGIETV 81
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI--DPASLPLNIVCDNIRDPGNMGSILR 115
V ++ +D TP GI + + PA P ++ DP S L +V D ++DPGN+G+I+R
Sbjct: 82 SVTRPIMERCTDTETPQGIFAVVDKPAEPAETLLADPGS-DLVVVVDGVQDPGNLGTIIR 140
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRA 142
AVGA VV RG VD+Y+ K IR+
Sbjct: 141 SADAVGASAVVLGRGTVDLYNPKAIRS 167
>gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
Length = 265
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALK + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKTGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKREKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|218234920|ref|YP_002369360.1| TrmH family RNA methyltransferase [Bacillus cereus B4264]
gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
Length = 265
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALK + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKTGIVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKILRETETTQGVFAVCEKREKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|165871509|ref|ZP_02216156.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
gi|167635640|ref|ZP_02393952.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
gi|167641566|ref|ZP_02399813.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
gi|170688235|ref|ZP_02879445.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
gi|170708732|ref|ZP_02899170.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
gi|177653114|ref|ZP_02935401.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
gi|190566871|ref|ZP_03019787.1| RNA methyltransferase, TrmH family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227817345|ref|YP_002817354.1| TrmH family RNA methyltransferase [Bacillus anthracis str. CDC 684]
gi|229604592|ref|YP_002868840.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
gi|386738457|ref|YP_006211638.1| TrmH family RNA methyltransferase [Bacillus anthracis str. H9401]
gi|164712806|gb|EDR18336.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
gi|167510451|gb|EDR85850.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
gi|167529060|gb|EDR91815.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
gi|170126412|gb|EDS95301.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
gi|170667741|gb|EDT18494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
gi|172081638|gb|EDT66709.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
gi|190561862|gb|EDV15831.1| RNA methyltransferase, TrmH family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227005701|gb|ACP15444.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
684]
gi|229269000|gb|ACQ50637.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
gi|384388309|gb|AFH85970.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. H9401]
Length = 265
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHESEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 144 AVVLGEGCVDAYNSKVLRST 163
>gi|196042135|ref|ZP_03109419.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
gi|196027071|gb|EDX65694.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
Length = 265
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHESEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 144 AVVLGEGCVDAYNSKVLRST 163
>gi|218905788|ref|YP_002453622.1| TrmH family RNA methyltransferase [Bacillus cereus AH820]
gi|228929608|ref|ZP_04092626.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935871|ref|ZP_04098681.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948286|ref|ZP_04110569.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229093656|ref|ZP_04224756.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
gi|229124127|ref|ZP_04253319.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
gi|423549699|ref|ZP_17526026.1| hypothetical protein IGW_00330 [Bacillus cereus ISP3191]
gi|218537643|gb|ACK90041.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
gi|228659429|gb|EEL15077.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
gi|228689743|gb|EEL43550.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
gi|228811273|gb|EEM57611.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228823639|gb|EEM69461.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228829995|gb|EEM75614.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|401190495|gb|EJQ97537.1| hypothetical protein IGW_00330 [Bacillus cereus ISP3191]
Length = 265
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHESEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 144 AVVLGEGCVDAYNSKVLRST 163
>gi|404371458|ref|ZP_10976762.1| hypothetical protein CSBG_01241 [Clostridium sp. 7_2_43FAA]
gi|226912414|gb|EEH97615.1| hypothetical protein CSBG_01241 [Clostridium sp. 7_2_43FAA]
Length = 260
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 81/145 (55%), Gaps = 9/145 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW--DILKELPLPEDVPQHRVDY 61
+K R+ R+K+G +LEG R++ +A KAN++++ + SQ + L L E + ++
Sbjct: 18 LKERRFRQKEGKFILEGFRLIEEAAKANMEIEYIILSQGNEEKLYNSSLKEVINDDKIYV 77
Query: 62 KNIQLW---SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ L+ S P G+I + + I +D +VCD ++DPGN+G+I+R
Sbjct: 78 FSSSLFLQISSTEHPQGVIAVVKNKKMTI-DLDGGFF---LVCDKVQDPGNLGTIIRTGH 133
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++ ++G VDIY++K IR+
Sbjct: 134 AAGVDGIILTKGTVDIYNDKTIRST 158
>gi|196034467|ref|ZP_03101876.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
gi|254724510|ref|ZP_05186293.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
A1055]
gi|195993009|gb|EDX56968.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
Length = 254
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHESEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 133 AVVLGEGCVDAYNSKVLRST 152
>gi|30264631|ref|NP_847008.1| RNA methyltransferase [Bacillus anthracis str. Ames]
gi|47530101|ref|YP_021450.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
gi|49187452|ref|YP_030704.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
gi|65321929|ref|ZP_00394888.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
gi|254686946|ref|ZP_05150804.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
CNEVA-9066]
gi|254736669|ref|ZP_05194375.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Western North America USA6153]
gi|254741707|ref|ZP_05199394.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Kruger B]
gi|254754696|ref|ZP_05206731.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Vollum]
gi|254757528|ref|ZP_05209555.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Australia 94]
gi|421509310|ref|ZP_15956217.1| 23S rRNA methyltransferase [Bacillus anthracis str. UR-1]
gi|421639173|ref|ZP_16079766.1| 23S rRNA methyltransferase [Bacillus anthracis str. BF1]
gi|30259289|gb|AAP28494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Ames]
gi|47505249|gb|AAT33925.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181379|gb|AAT56755.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Sterne]
gi|401820762|gb|EJT19925.1| 23S rRNA methyltransferase [Bacillus anthracis str. UR-1]
gi|403393592|gb|EJY90835.1| 23S rRNA methyltransferase [Bacillus anthracis str. BF1]
Length = 254
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHESEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 133 AVVLGEGCVDAYNSKVLRST 152
>gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
DSM 574]
gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
DSM 574]
Length = 264
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI-------LKELPLPEDVPQ 56
+ R REK+ L++EG R++ +AL++ + + ++ + L EL +
Sbjct: 17 LAQRNFREKERKLVVEGVRLVEEALQSGWRTESFVYTYEAVQNERGSRLLELAQRKCAQT 76
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
++V + SD TP G++ + P + +A + P PL +V D ++DPGN+G+I+R
Sbjct: 77 YQVTAHIMSQLSDTETPQGVLAVLWQPDYVLADVLPGQPPLVVVVDGVQDPGNLGTIVRS 136
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ +G VDIY+ K IRA
Sbjct: 137 ADAAGASGVLLLKGTVDIYNPKTIRAT 163
>gi|196044916|ref|ZP_03112150.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
gi|229186815|ref|ZP_04313970.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
gi|376268486|ref|YP_005121198.1| TrmH family RNA methyltransferase [Bacillus cereus F837/76]
gi|196024404|gb|EDX63077.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
gi|228596552|gb|EEK54217.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
gi|364514286|gb|AEW57685.1| RNA methyltransferase, TrmH family [Bacillus cereus F837/76]
Length = 265
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 144 AVVLGEGCVDAYNSKVLRST 163
>gi|225866536|ref|YP_002751914.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
gi|225786909|gb|ACO27126.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
Length = 254
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 133 AVVLGEGCVDAYNSKVLRST 152
>gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
Length = 265
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+ KG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDTKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423557858|ref|ZP_17534160.1| hypothetical protein II3_03062 [Bacillus cereus MC67]
gi|401192395|gb|EJQ99411.1| hypothetical protein II3_03062 [Bacillus cereus MC67]
Length = 265
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+ KG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDNKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423452157|ref|ZP_17429010.1| hypothetical protein IEE_00901 [Bacillus cereus BAG5X1-1]
gi|423470763|ref|ZP_17447507.1| hypothetical protein IEM_02069 [Bacillus cereus BAG6O-2]
gi|401142228|gb|EJQ49777.1| hypothetical protein IEE_00901 [Bacillus cereus BAG5X1-1]
gi|402434501|gb|EJV66539.1| hypothetical protein IEM_02069 [Bacillus cereus BAG6O-2]
Length = 265
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+ KG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDNKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|408489536|ref|YP_006865905.1| RNA methyltransferase, SpoU_methylase superfamily [Psychroflexus
torquis ATCC 700755]
gi|408466811|gb|AFU67155.1| RNA methyltransferase, SpoU_methylase superfamily [Psychroflexus
torquis ATCC 700755]
Length = 242
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R + G + EG +++ + LK+ +L +S DI E+ H + K+
Sbjct: 13 LNKKKHRLENGLFVAEGVKVIKEFLKSPFRLN-ALYSIADIFH----IEEGESHIISEKD 67
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+Q S+L T + +FE+P +S+ + L + D+IRDPGN+G+I+R+C G +
Sbjct: 68 LQQISNLKTAQTALAVFEIPK---SSVPDEKVELTLALDSIRDPGNLGTIIRMCDWFGVK 124
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q++CS VD ++ KV++A
Sbjct: 125 QLICSLDTVDCFNPKVVQAT 144
>gi|423521554|ref|ZP_17498027.1| hypothetical protein IGC_00937 [Bacillus cereus HuA4-10]
gi|401177756|gb|EJQ84943.1| hypothetical protein IGC_00937 [Bacillus cereus HuA4-10]
Length = 265
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+ KG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDTKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|423457203|ref|ZP_17434000.1| hypothetical protein IEI_00343 [Bacillus cereus BAG5X2-1]
gi|401148980|gb|EJQ56463.1| hypothetical protein IEI_00343 [Bacillus cereus BAG5X2-1]
Length = 265
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHESEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 144 AVVLGEGCVDAYNSKVLRST 163
>gi|345861091|ref|ZP_08813367.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Desulfosporosinus sp. OT]
gi|344325819|gb|EGW37321.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Desulfosporosinus sp. OT]
Length = 264
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDV 54
+V ++ RK RE+ ++EG R + DA+ N +K V+ Q WD ++E +
Sbjct: 13 VVSLQRRKAREEAQLFVIEGWRFVEDAVCRNAPIKKVYVCQKRESLEWDSIQETLRERKI 72
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
P VD + ++ S P GI+ + + + I + ++ D I+DPGN+G+IL
Sbjct: 73 PFEEVDERVLRKMSSTEEPQGILAVVRQAHNSWSEIHIDKHSVLLILDGIQDPGNLGTIL 132
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G R V + G VD+Y+ KV+R+
Sbjct: 133 RTALASGVRYVCLTPGTVDLYNPKVLRST 161
>gi|423400592|ref|ZP_17377765.1| hypothetical protein ICW_00990 [Bacillus cereus BAG2X1-2]
gi|423478699|ref|ZP_17455414.1| hypothetical protein IEO_04157 [Bacillus cereus BAG6X1-1]
gi|401655316|gb|EJS72850.1| hypothetical protein ICW_00990 [Bacillus cereus BAG2X1-2]
gi|402426730|gb|EJV58845.1| hypothetical protein IEO_04157 [Bacillus cereus BAG6X1-1]
Length = 265
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHESEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 144 AVVLGEGCVDAYNSKVLRST 163
>gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
Length = 265
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHESEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 144 AVVLGEGCVDAYNSKVLRST 163
>gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase SpoU [Desulfitobacterium hafniense
DCB-2]
gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
DCB-2]
Length = 271
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF------SQWDILKELPLPEDV 54
+V + RK RE+ G ++EG R + + L L VFF W L E + V
Sbjct: 13 VVNLHKRKFREENGEFLIEGWRFVEEGLARGAHLTKVFFCSECKNESWPQLAEALKVKGV 72
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHP----IASIDPA---SLPLNIVCDNIRDP 107
P VD + ++ SD P GI+ + + I ++PA ++P+ ++ D ++DP
Sbjct: 73 PVIEVDERVLRKMSDTENPQGILAVVKQSRWTWDDFIEIVNPAGRSAIPMLLILDGVQDP 132
Query: 108 GNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
GN G+ILR A G QV + G VD+Y+ KV+R+
Sbjct: 133 GNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRST 168
>gi|423072082|ref|ZP_17060844.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
hafniense DP7]
gi|361857217|gb|EHL09066.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
hafniense DP7]
Length = 271
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF------SQWDILKELPLPEDV 54
+V + RK RE+ G ++EG R + + L L VFF W L E + V
Sbjct: 13 VVNLHKRKFREENGEFLIEGWRFVEEGLARGAHLTKVFFCSECKNESWPQLAEALKVKGV 72
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHP----IASIDPA---SLPLNIVCDNIRDP 107
P VD + ++ SD P GI+ + + I ++PA ++P+ ++ D ++DP
Sbjct: 73 PVIEVDERVLRKMSDTENPQGILAVVKQSRWTWDDFIEIVNPAGRSAIPMLLILDGVQDP 132
Query: 108 GNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
GN G+ILR A G QV + G VD+Y+ KV+R+
Sbjct: 133 GNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRST 168
>gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987]
Length = 254
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALK + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKVGVVTELIVSDQTDLPKDWTV-NDVEMYIVPESI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHEKEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 133 AVVLGEGCVDVYNSKVLRST 152
>gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51]
gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 285
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF------SQWDILKELPLPEDV 54
+V + RK RE+ G ++EG R + + L L VFF W L E + V
Sbjct: 27 VVNLHKRKFREENGEFLIEGWRFVEEGLARGAHLTKVFFCSECKNESWPQLAEALKVKGV 86
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHP----IASIDPA---SLPLNIVCDNIRDP 107
P VD + ++ SD P GI+ + + I ++PA ++P+ ++ D ++DP
Sbjct: 87 PVIEVDERVLRKMSDTENPQGILAVVKQSRWTWDDFIEIVNPAGRSAIPMLLILDGVQDP 146
Query: 108 GNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
GN G+ILR A G QV + G VD+Y+ KV+R+
Sbjct: 147 GNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRST 182
>gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
Length = 254
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHEKEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 133 AVVLGEGCVDAYNSKVLRST 152
>gi|402302272|ref|ZP_10821390.1| RNA methyltransferase, TrmH family [Selenomonas sp. FOBRC9]
gi|400380913|gb|EJP33720.1| RNA methyltransferase, TrmH family [Selenomonas sp. FOBRC9]
Length = 277
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 12/148 (8%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDYKNIQ 65
K+ +K+G +EG R+ +++ +++ FF+ + L L E + + R I
Sbjct: 26 KRAKKEGLFAVEGLRLAESIMQSEWRIRFAFFTDRGGESLAAAQLVEKLCERRTPVYLIS 85
Query: 66 -----LWSDLVTPPGIIGIFEL-PAHPIAS-IDPAS---LPLNIVCDNIRDPGNMGSILR 115
SD TP G++ I E P P+ + P S PL +V D ++DPGN+G+ILR
Sbjct: 86 DELCAALSDTDTPQGVLLIAERDPGTPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILR 145
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA +V RGC DIY+NKV+RAA
Sbjct: 146 TAVAAGASGIVLLRGCADIYNNKVVRAA 173
>gi|424781058|ref|ZP_18207924.1| rRNA methylase [Catellicoccus marimammalium M35/04/3]
gi|422842478|gb|EKU26930.1| rRNA methylase [Catellicoccus marimammalium M35/04/3]
Length = 249
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 9/138 (6%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFF--SQWDILKELPLPEDVPQHRVDYKNI 64
RK R++ G +LEG +L +ALKA K++ +F SQ + L+E+ E +P + V +
Sbjct: 21 RKGRKESGCFILEGWHLLEEALKAGAKIEQIFVLESQQERLQEV---EGIPVYCVTESVL 77
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
+ S P G++ I + +P +++ A + L D ++DPGN+G+I+R A G +
Sbjct: 78 KAMSSAEKPQGVLAIAKQWEYPELTLEGAWVFL----DRVQDPGNVGTIIRTADAAGYQG 133
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ GC D+Y++KV+R+
Sbjct: 134 VILGEGCADLYNDKVLRS 151
>gi|49478690|ref|YP_038610.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49330246|gb|AAT60892.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 254
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEVI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHESEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 133 AVVLGEGCVDAYNSKVLRST 152
>gi|402555316|ref|YP_006596587.1| 23S rRNA methyltransferase [Bacillus cereus FRI-35]
gi|401796526|gb|AFQ10385.1| 23S rRNA methyltransferase [Bacillus cereus FRI-35]
Length = 254
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALK + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKVGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHEKEVALADGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 133 AVVLGEGCVDVYNSKVLRST 152
>gi|153853513|ref|ZP_01994893.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
gi|149753668|gb|EDM63599.1| RNA methyltransferase, TrmH family, group 3 [Dorea longicatena DSM
13814]
Length = 263
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 5 KSRKQREKKGWLMLEGKRIL----IDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
K RK R+++ ++EG R+ +D LK + + + D +KE+ V +
Sbjct: 18 KKRKLRDEESVFLVEGIRMFREVPLDKLKEVYVSESFYKKEKDTVKEVLKDSKVRVEELT 77
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
SD TP GI+ + E H I + A PL +V D+++DPGN+G+ILR
Sbjct: 78 DTVFAHASDTKTPQGILCVVEQMNHEINELTSAKCPLIMVLDHLQDPGNLGTILRTAEGA 137
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++ R CVD+Y+ K IR+
Sbjct: 138 GVTGILMDRECVDVYNPKTIRST 160
>gi|374992889|ref|YP_004968388.1| rRNA methylase [Desulfosporosinus orientis DSM 765]
gi|357211255|gb|AET65873.1| rRNA methylase [Desulfosporosinus orientis DSM 765]
Length = 264
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS------QWDILKELPLPEDVPQH 57
++ RK RE+ ++EG R + + + N +K VF +W L+ + D+P
Sbjct: 16 LQRRKAREEAQLFVIEGWRFVEEGVHRNAAIKKVFVCLERNPIEWQTLRVMLKERDIPFE 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
VD + + S P G++ + + I + ++ D ++DPGN+G+ILR
Sbjct: 76 EVDARVFRKMSATEEPQGVLAVVRQTTFSWSDIHIKQGTVVLILDGLQDPGNLGTILRTA 135
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G RQV + G VD+Y+ KV+R+
Sbjct: 136 LAAGVRQVFLTPGTVDLYNPKVLRST 161
>gi|313896326|ref|ZP_07829879.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975125|gb|EFR40587.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
str. F0430]
Length = 277
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 12/148 (8%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDYKNIQ 65
K+ +K+G +EG R+ +++ +++ FF+ + L L E + + R I
Sbjct: 26 KRAKKEGLFAVEGLRLAESIMQSEWRIRFAFFTDRGGESLAAAQLVEKLCERRTPVYLIS 85
Query: 66 -----LWSDLVTPPGIIGIFEL-PAHPIAS-IDPAS---LPLNIVCDNIRDPGNMGSILR 115
SD TP G++ I E P P+ + P S PL +V D ++DPGN+G+ILR
Sbjct: 86 DELCAELSDTDTPQGVLLIAERDPGTPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILR 145
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA +V RGC DIY+NKV+RAA
Sbjct: 146 TAVAAGASGIVLLRGCADIYNNKVVRAA 173
>gi|148655189|ref|YP_001275394.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
gi|148567299|gb|ABQ89444.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
Length = 262
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ--------HR 58
R +R ++ L+LEG R++ DAL++ L + ++ D L+ P + Q +
Sbjct: 20 RHERRRERMLVLEGVRLVADALESGATLTLTLYAP-DQLQLTPAGAALLQKLRYLPASYE 78
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ + SD V P G++ + P + P L +V D ++DPGN+G++LR
Sbjct: 79 ATPQVVAAASDTVHPQGVVALASWP-----HVAPGKPGLLLVIDAVQDPGNLGTLLRSAE 133
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
AVG QV+CS G VD+Y KV+R+A
Sbjct: 134 AVGVAQVLCSVGTVDLYAPKVVRSA 158
>gi|392971751|ref|ZP_10337144.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046928|ref|ZP_10902397.1| rRNA methylase [Staphylococcus sp. OJ82]
gi|392510290|emb|CCI60432.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
gi|402763624|gb|EJX17717.1| rRNA methylase [Staphylococcus sp. OJ82]
Length = 246
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 2 VYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY 61
+ +K +++R+K G ++EG ++ +A K+NLK++ ++ + L + + ++
Sbjct: 16 IKLKKKRERDKTGRALIEGYHLIEEAYKSNLKIEQLYVVDIERLDDGMINHADEVFEINL 75
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
K + S VTP G + E P H A+ ++ D I+DPGN+G+++R A G
Sbjct: 76 KVAEALSGTVTPQGFFAVIEKPVHETANAQQV-----LLIDCIQDPGNLGTLIRTADAAG 130
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+V +G D Y +KV+RA+
Sbjct: 131 LDLIVLEKGTADPYQDKVMRAS 152
>gi|320529196|ref|ZP_08030288.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
artemidis F0399]
gi|320138826|gb|EFW30716.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
artemidis F0399]
Length = 277
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDYKNIQ 65
K+ +K+G +EG R+ +++ ++ FF+ + L L E + + R I
Sbjct: 26 KRAKKEGLFAVEGLRLAESIMQSEWRIHFAFFTDRGGESLAAAQLVEKLCERRTPVYLIS 85
Query: 66 -----LWSDLVTPPGIIGIFEL-PAHPIAS-IDPAS---LPLNIVCDNIRDPGNMGSILR 115
SD TP G++ I E P P+ + P S PL +V D ++DPGN+G+ILR
Sbjct: 86 DELCAALSDTDTPQGVLLIAERDPGTPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILR 145
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA +V RGC DIY+NKV+RAA
Sbjct: 146 TAVAAGASGIVLLRGCADIYNNKVVRAA 173
>gi|222151576|ref|YP_002560732.1| rRNA methyltransferase [Macrococcus caseolyticus JCSC5402]
gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
Length = 246
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +RK R+K ++EG+ ++ +A+ +N+ ++M+ D L E + Q+ + +K
Sbjct: 18 LHNRKDRKKMQQFIIEGEHLVEEAVNSNIDIEMILTVNPDRLTEAMVAGSKQQYEITFKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAVG 121
+ S P GI + + D LN I D I+DPGN+G+I+R A G
Sbjct: 78 AEKLSQTEAPQGIYAVCNMK-------DGKDAELNRVIYLDRIQDPGNVGTIIRTADAAG 130
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
V+ ++G VDIY++KV+RA+
Sbjct: 131 LDAVIIAKGTVDIYNDKVLRAS 152
>gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63]
gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
Length = 265
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WDILKE-LPLPEDVPQ-----HRVD 60
K R K+ ++EG RI++ AL+ L VF ++ ++ KE + L ED+ + ++
Sbjct: 23 KNRNKESKFIIEGYRIVVLALECMANLDYVFINEDFENKKEHVKLLEDLDKKNTKIYKTT 82
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
KN + D GIIG+ ++ ++ D I+DPGNMG+I+R +
Sbjct: 83 NKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKFVLILDRIQDPGNMGTIIRTADSA 142
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++ +GCVDIY+ KVIR+
Sbjct: 143 GVEAIIALKGCVDIYNPKVIRST 165
>gi|255531174|ref|YP_003091546.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
gi|255344158|gb|ACU03484.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
Length = 249
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 79/142 (55%), Gaps = 4/142 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF-SQWDILKELP-LPEDVPQHRVDY 61
+ +K R++ G ++EG + + + + +N ++ +++ +Q+ L LP LP ++ V+
Sbjct: 13 LHQKKYRKENGIFIIEGIKSIEEFIHSNYQVHSIYYLAQYQSL--LPALPANIKLFEVNN 70
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
+ S L TP GI+ + +P P+ ++V D ++DPGNMG+I+R G
Sbjct: 71 AELDKISTLQTPQGILALVNIPEPPLFKPATPKNLFSLVLDGVQDPGNMGTIIRTADWFG 130
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+ ++CS CV++Y+ K ++A
Sbjct: 131 FKNIICSNNCVEVYNPKTVQAT 152
>gi|301056070|ref|YP_003794281.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str.
CI]
gi|300378239|gb|ADK07143.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str.
CI]
Length = 254
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ + LKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEVLKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHESEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 133 AVVLGEGCVDAYNSKVLRST 152
>gi|381186990|ref|ZP_09894556.1| RNA methyltransferase, TrmH family [Flavobacterium frigoris PS1]
gi|379651090|gb|EIA09659.1| RNA methyltransferase, TrmH family [Flavobacterium frigoris PS1]
Length = 241
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R EG +++ + L++N +L+ ++ +Q D +++ + H D K
Sbjct: 13 LQQKKYRIAHQLFFAEGVKVIQELLESNFELEHLYTTQND-FEDVLFIKKTLVHETDLKK 71
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
I S L TP + +F++P I + L + D+IRDPGN+G+ILR+C G
Sbjct: 72 I---SALATPNTCLAVFKMPVEK--KIKESGLM--VALDSIRDPGNLGTILRLCDWFGVE 124
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q++CS+ VD+Y+ KV++A
Sbjct: 125 QLLCSKETVDLYNPKVVQAT 144
>gi|187776946|ref|ZP_02993419.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
15579]
gi|187775605|gb|EDU39407.1| RNA methyltransferase, TrmH family [Clostridium sporogenes ATCC
15579]
Length = 259
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI------LKELPLPEDVPQH 57
++ +K R + ++EG R +ALK+N + VF + + K+ + D+ +
Sbjct: 16 LREKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEKLYKKYNINNDIETY 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V+Y ++ S+ P GI+ + ++ I+ D ++DPGNMG+I+R
Sbjct: 76 VVNYSVLKSISNTENPQGIVSVINYFKTEKLDLENG---FYILVDKVQDPGNMGTIIRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA ++ ++G VD+Y+ K +R+
Sbjct: 133 HAAGALGIITTKGTVDVYNEKTLRST 158
>gi|418576551|ref|ZP_13140685.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
KACC 16562]
gi|379324972|gb|EHY92116.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
KACC 16562]
Length = 246
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 80/142 (56%), Gaps = 9/142 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDY 61
+K +++R+K G ++EG ++ +A K+N+K++ ++ D +++ + E+V ++
Sbjct: 18 LKKKRERDKTGLALIEGYHLIEEAYKSNIKIQQLYVVDADRIQDDMISYAEEV--FEINL 75
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
K ++ S VTP G + E PI A L I C I+DPGN+G+++R AVG
Sbjct: 76 KVAEVLSGTVTPQGFFAVIE---KPIYETTNAKQVLLIDC--IQDPGNLGTLIRTADAVG 130
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+V +G D Y +KV+RA+
Sbjct: 131 LDLIVLEKGTADPYQDKVMRAS 152
>gi|153939007|ref|YP_001392409.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
gi|384463381|ref|YP_005675976.1| TrmH family RNA methyltransferase [Clostridium botulinum F str.
230613]
gi|152934903|gb|ABS40401.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
Langeland]
gi|295320398|gb|ADG00776.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
230613]
Length = 259
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
++ +K R + ++EG R +ALK+N + VF + ++ K+ + D+ +
Sbjct: 16 LREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETY 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V+Y ++ + P GI+ + + I+ D ++DPGNMG+I+R
Sbjct: 76 VVNYSVLKSIGNTENPQGIVSVINYFKKEKLDLQNG---FYILVDKVQDPGNMGTIIRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ ++G VDIY+ K +R+
Sbjct: 133 HAAGALGVITTKGTVDIYNEKTLRST 158
>gi|170754304|ref|YP_001782766.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
gi|429246451|ref|ZP_19209771.1| RNA methyltransferase [Clostridium botulinum CFSAN001628]
gi|169119516|gb|ACA43352.1| RNA methyltransferase, TrmH family [Clostridium botulinum B1 str.
Okra]
gi|428756541|gb|EKX79093.1| RNA methyltransferase [Clostridium botulinum CFSAN001628]
Length = 259
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
++ +K R + ++EG R +ALK+N + VF + ++ K+ + D+ +
Sbjct: 16 LREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETY 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V+Y ++ + P GI+ + + I+ D ++DPGNMG+I+R
Sbjct: 76 VVNYSVLKSIGNTENPQGIVSVINYFKKEKLDLQNG---FYILVDKVQDPGNMGTIIRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ ++G VDIY+ K +R+
Sbjct: 133 HAAGALGVITTKGTVDIYNEKTLRST 158
>gi|402298427|ref|ZP_10818122.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
gi|401726400|gb|EJS99632.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
Length = 254
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQ 65
++K R+K G +LEG ++ +ALKA LK + + + D ++ E V + ++
Sbjct: 20 TKKGRDKSGQFLLEGFHLIEEALKAKLKFEAILVTNEDKIESQWQIERKKFIIVTEQVLK 79
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
S++ TP G++ I ++P P A+ ++ D ++DPGN+G+++R A G +
Sbjct: 80 ELSEMDTPQGVVAIVQMPTWPE---QIATTGQWLLIDRVQDPGNIGTMIRTAEAAGLTGI 136
Query: 126 VCSRGCVDIYDNKVIRAA 143
V G VD+Y+ KV+RA
Sbjct: 137 VLGEGSVDLYNGKVVRAT 154
>gi|395803025|ref|ZP_10482276.1| tRNA/rRNA methyltransferase SpoU [Flavobacterium sp. F52]
gi|395434843|gb|EJG00786.1| tRNA/rRNA methyltransferase SpoU [Flavobacterium sp. F52]
Length = 242
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR EG +++ + L++N +L+ + + L + + ++ +
Sbjct: 13 LHQKKQRFANQLFFAEGVKVIQELLQSNFELEHL----YTTLNDFQTVHASKRTLINEQE 68
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L TP + +F++PA ID L + D+IRDPGN+G+ILR+C G +
Sbjct: 69 LKKISALSTPNSCLAVFKIPAEK-EIIDSG---LILALDDIRDPGNLGTILRLCDWFGIK 124
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q++CS+ VDIY+ KV++A
Sbjct: 125 QIICSKETVDIYNPKVVQAT 144
>gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase SpoU [Acetohalobium arabaticum DSM
5501]
gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
5501]
Length = 268
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R + +LEG RI+ DAL+A + +F+S L + E + Q R + I++
Sbjct: 22 KKYRRRNNKFILEGSRIITDALEAKADIDQIFYSAQ-FLSQQKNKELLAQLREVTEIIEI 80
Query: 67 W-------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+D TP GII I P + L ++ D I+DPGN+G+ILR
Sbjct: 81 TDSLLNKIADTATPQGIIAIVNQPEFELEDFLIEDNDLFLIIDRIQDPGNLGTILRTADG 140
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V +G VDIY+ K IRA
Sbjct: 141 AGVDGVFLLKGTVDIYNLKTIRAT 164
>gi|375084722|ref|ZP_09731581.1| hypothetical protein HMPREF9454_00192 [Megamonas funiformis YIT
11815]
gi|374567857|gb|EHR39056.1| hypothetical protein HMPREF9454_00192 [Megamonas funiformis YIT
11815]
Length = 264
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 19/152 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW--------DILKELPLP-EDV 54
++ +K R+K +LEG R + N+ ++M FF+Q IL++L P +V
Sbjct: 18 LQQKKYRDKYQLFILEGIRNAEMVIAKNISVQMCFFTQKAFTNERGKSILEQLNCPCFEV 77
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAH---PIASIDPASLPLNIVCDNIRDPGNMG 111
P+H Y+ I SD +P G++ I + H +A+I+ + L L + D ++DPGN+G
Sbjct: 78 PEHI--YQKI---SDTQSPQGLMLILPIQNHNLDDLATINKSGLYL--ILDRLQDPGNIG 130
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+I+R A+G + ++C G DIY KV+R+A
Sbjct: 131 TIIRTADAMGVKAIICLNGTADIYSPKVVRSA 162
>gi|170759752|ref|YP_001788451.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
gi|169406741|gb|ACA55152.1| RNA methyltransferase, TrmH family [Clostridium botulinum A3 str.
Loch Maree]
Length = 259
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
++ +K R + ++EG R +ALK+N + VF + ++ K+ + D+ +
Sbjct: 16 LREKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETY 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V+Y ++ + P GI+ + + I+ D ++DPGNMG+I+R
Sbjct: 76 VVNYSVLKSIGNTENPQGIVSVINYFKREKLDLQNG---FYILVDKVQDPGNMGTIIRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ ++G VDIY+ K +R+
Sbjct: 133 HAAGALGVITTKGTVDIYNEKTLRST 158
>gi|387819398|ref|YP_005679745.1| TrmH family RNA methyltransferase [Clostridium botulinum H04402
065]
gi|322807442|emb|CBZ05016.1| RNA methyltransferase, TrmH family [Clostridium botulinum H04402
065]
Length = 259
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
++ +K R + ++EG R +ALK+N + VF + ++ K+ + D+ +
Sbjct: 16 LREKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETY 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V+Y ++ + P GI+ + + I+ D ++DPGNMG+I+R
Sbjct: 76 VVNYSVLKSIGNTENPQGIVSVINYFKKEKLDLQNG---FYILVDKVQDPGNMGTIIRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ ++G VDIY+ K +R+
Sbjct: 133 HAAGALGVITTKGTVDIYNEKTLRST 158
>gi|300772566|ref|ZP_07082436.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300760869|gb|EFK57695.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 249
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R++ G ++EG + + + L + + +F++ K + +P ++ + +
Sbjct: 13 LQHKKFRKQHGLFVVEGIKSVTEFLSSAYDVHALFYTANVTTKVVKIPHNIKSYELTDNE 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPI-ASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
S L +P GI+ + LP +D A+ +V D+++DPGN+G+I+R G
Sbjct: 73 FSKISQLKSPQGILALVRLPKEKTPEQLDFAN-QFTLVLDDVQDPGNLGTIIRTAEWFGF 131
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ +VCS G VD Y+ KV++A
Sbjct: 132 KHIVCSAGTVDAYNPKVVQAT 152
>gi|256420719|ref|YP_003121372.1| tRNA/rRNA methyltransferase SpoU [Chitinophaga pinensis DSM 2588]
gi|256035627|gb|ACU59171.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
Length = 248
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL---PEDVPQHRVD 60
++ +K R+K M EG +I+ + L+ + +K V+ + I L +DV VD
Sbjct: 13 LQHKKYRQKSSQFMAEGDKIVPELLQEGVPVKEVYATSAWIAAHRALLDRTKDVNVTEVD 72
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASL--PLNIVCDNIRDPGNMGSILRVCA 118
++ S L TP I + ++P A+I P SL +++ + I+DPGN+G+I+R+
Sbjct: 73 ENVLRQLSALTTPNQAIALLDIPGS--AAIAPGSLKGTVSLALETIQDPGNLGTIIRIAD 130
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
G RQ++C+ CVD Y+ K I+A
Sbjct: 131 WFGIRQIICTPDCVDAYNPKTIQAT 155
>gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 2360]
gi|385778389|ref|YP_005687554.1| TrmH family RNA methyltransferase [Clostridium thermocellum DSM
1313]
gi|419721303|ref|ZP_14248468.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum AD2]
gi|419724385|ref|ZP_14251451.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum YS]
gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 2360]
gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 1313]
gi|380772207|gb|EIC06061.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum YS]
gi|380782683|gb|EIC12316.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum AD2]
Length = 267
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 12/149 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--------WDILKELPLPEDVP 55
+K +K RE+K +EG R + +ALK ++++ + S ++ILK++ P
Sbjct: 18 LKQKKYREEKKLFFIEGIRFVEEALKEGVQIERILVSDKLAETNSGYEILKKVS-NGGYP 76
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGSIL 114
++ +K SD P GI+ + + I + D + ++ D+++DPGNMG+I+
Sbjct: 77 VFQLPHKLFMEISDTQNPQGILAVLSMKNCDIEDVWDEKNFF--VILDSVQDPGNMGTII 134
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G V+ S+GCVD+Y+ KV+R+
Sbjct: 135 RTADAAGMTGVIVSKGCVDVYNPKVLRST 163
>gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum JW20]
gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum ATCC 27405]
gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum JW20]
Length = 267
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 12/149 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--------WDILKELPLPEDVP 55
+K +K RE+K +EG R + +ALK ++++ + S ++ILK++ P
Sbjct: 18 LKQKKYREEKKLFFIEGIRFVEEALKEGVQIERILVSDKLAETNSGYEILKKVS-NGGYP 76
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGSIL 114
++ +K SD P GI+ + + I + D + ++ D+++DPGNMG+I+
Sbjct: 77 VFQLPHKLFMEISDTQNPQGILAVLSMKNCDIEDVWDEKNFF--VILDSVQDPGNMGTII 134
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G V+ S+GCVD+Y+ KV+R+
Sbjct: 135 RTADAAGMTGVIVSKGCVDVYNPKVLRST 163
>gi|409197427|ref|ZP_11226090.1| tRNA/rRNA methyltransferase SpoU [Marinilabilia salmonicolor JCM
21150]
Length = 252
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 15/146 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE---DVPQHRVD 60
+ +K R+K G + EG ++L D L+A ++ +M+ ++ +PLPE V
Sbjct: 13 LSQKKYRDKHGLFVAEGPKLLHDLLEAGIQAEMILTTE-----NVPLPETRSSAVTEIVT 67
Query: 61 YKNIQLWSDLVTPPGIIGIFELPA---HPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+ ++ S L TP + +F +P+ HP + + L++ D I+DPGNMG+I+R+
Sbjct: 68 AQELKKISFLKTPQNTLAVFRMPSVKFHP----EQLNNQLSLALDGIQDPGNMGTIIRMA 123
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
G +VCS+ VD Y+ KV++A+
Sbjct: 124 DWFGISTIVCSKDTVDCYNPKVVQAS 149
>gi|315658555|ref|ZP_07911427.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
gi|315496884|gb|EFU85207.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
Length = 246
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 23/149 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY-- 61
+K +++R+K G ++EG ++ +A ++NL +K +F + PE Q +DY
Sbjct: 18 LKKKRERDKTGQALIEGIHLIEEAYQSNLTIKQLFIIE---------PERTEQALIDYAE 68
Query: 62 -------KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
K + S +TP G + E P + + ++ D I+DPGN+G+++
Sbjct: 69 ETFQINMKVAETLSGTITPQGFFAVIEKPNYDVTHAKQV-----LLIDRIQDPGNLGTLI 123
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V +G D Y +KV+RA+
Sbjct: 124 RTADAAGIDLIVMEKGTADAYQDKVLRAS 152
>gi|332798670|ref|YP_004460169.1| tRNA/rRNA methyltransferase SpoU [Tepidanaerobacter acetatoxydans
Re1]
gi|438001659|ref|YP_007271402.1| FIG011178: rRNA methylase [Tepidanaerobacter acetatoxydans Re1]
gi|332696405|gb|AEE90862.1| tRNA/rRNA methyltransferase (SpoU) [Tepidanaerobacter acetatoxydans
Re1]
gi|432178453|emb|CCP25426.1| FIG011178: rRNA methylase [Tepidanaerobacter acetatoxydans Re1]
Length = 271
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMV-----FFSQ----WDILKELPLPEDV 54
+KS+K R K ++EG + + +++K+N +++ V FF IL + P +
Sbjct: 17 IKSKKARMKNRCFIVEGLKNVAESIKSNYEVRFVVISDDFFKSNIGFIKILSKQVCPNRL 76
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
Q R + N +D VTP GI+ + I + + L I D I+DPGNMG+I+
Sbjct: 77 YQVRDNLFN--ELTDTVTPQGIMAVINFKDTNIEDVQKENF-LMIALDRIQDPGNMGTII 133
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A GA +V + CVDIY+ KV+R+A
Sbjct: 134 RTADAAGADAIVIGQKCVDIYNPKVVRSA 162
>gi|404418388|ref|ZP_11000155.1| rRNA methyltransferase [Staphylococcus arlettae CVD059]
gi|403488981|gb|EJY94559.1| rRNA methyltransferase [Staphylococcus arlettae CVD059]
Length = 246
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A K+++K+ +F + L + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGHHLIEEAFKSDIKILQLFMVEQGRLDSQIVDYAETCFEINIKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ SD VTP G + E P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEALSDTVTPQGFFAVIEKPTY-----DTTKATQVLLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D Y +KV+RA+
Sbjct: 133 LIVLEKGTADPYQDKVLRAS 152
>gi|373454585|ref|ZP_09546451.1| hypothetical protein HMPREF9453_00620 [Dialister succinatiphilus
YIT 11850]
gi|371935860|gb|EHO63603.1| hypothetical protein HMPREF9453_00620 [Dialister succinatiphilus
YIT 11850]
Length = 263
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 9/148 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR----- 58
+K RK R+K+G +LEG R D L ++ + F + ++ + E V Q
Sbjct: 18 LKQRKWRDKEGLFLLEGLRGTTDVLNQQVRDCICFIEDGRLADDM-VDELVSQGERLHWL 76
Query: 59 ---VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
VD + + L S GI+ + H ++ + +V D+++DPGNMG+ILR
Sbjct: 77 FLSVDKEMMHLLSGTEHGQGILLLCRKQHHDLSELLHPLKGYYVVLDSVQDPGNMGTILR 136
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
CAA G + ++ + GC DIY KV+R++
Sbjct: 137 TCAAAGVKGLILTEGCTDIYAEKVVRSS 164
>gi|168181825|ref|ZP_02616489.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
gi|237796588|ref|YP_002864140.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
657]
gi|182675129|gb|EDT87090.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
gi|229263217|gb|ACQ54250.1| RNA methyltransferase, TrmH family [Clostridium botulinum Ba4 str.
657]
Length = 259
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
++ +K R + ++EG R +ALK+N + VF + ++ K+ + D+ +
Sbjct: 16 LREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETY 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V Y ++ + P GI+ + + I+ D ++DPGNMG+I+R
Sbjct: 76 VVSYSVLKSIGNTENPQGIVSVINYFKKEKLDLQNG---FYILVDKVQDPGNMGTIIRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ ++G VDIY+ K +R+
Sbjct: 133 HAAGALGVITTKGTVDIYNEKTLRST 158
>gi|402494869|ref|ZP_10841605.1| tRNA/rRNA methyltransferase SpoU [Aquimarina agarilytica ZC1]
Length = 246
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 79/142 (55%), Gaps = 8/142 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF--SQWDILKELPLPEDVPQHRVDY 61
+K +K R++ G ++EG +++ + L + LK +F ++ + E+ E+ + V
Sbjct: 13 LKQKKYRKQHGLFVVEGIKVIREFLNTHYVLKNLFVLNAEVHLFHEI---EEKKRQVVSE 69
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
+ S L TP + +FE+P +A + L +V D+++DPGN+G+I+R+C G
Sbjct: 70 LELSQLSFLTTPQKAVAVFEIP---VAKTEVKHEGLQVVLDDVKDPGNLGTIIRLCDWFG 126
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+++CS VD Y+ KV++A
Sbjct: 127 VERLICSNETVDCYNPKVVQAT 148
>gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
gi|423368589|ref|ZP_17346021.1| hypothetical protein IC3_03690 [Bacillus cereus VD142]
gi|423489724|ref|ZP_17466406.1| hypothetical protein IEU_04347 [Bacillus cereus BtB2-4]
gi|423495447|ref|ZP_17472091.1| hypothetical protein IEW_04345 [Bacillus cereus CER057]
gi|423497758|ref|ZP_17474375.1| hypothetical protein IEY_00985 [Bacillus cereus CER074]
gi|423512662|ref|ZP_17489193.1| hypothetical protein IG3_04159 [Bacillus cereus HuA2-1]
gi|423519244|ref|ZP_17495725.1| hypothetical protein IG7_04314 [Bacillus cereus HuA2-4]
gi|423591464|ref|ZP_17567495.1| hypothetical protein IIG_00332 [Bacillus cereus VD048]
gi|423598146|ref|ZP_17574146.1| hypothetical protein III_00948 [Bacillus cereus VD078]
gi|423660596|ref|ZP_17635765.1| hypothetical protein IKM_00993 [Bacillus cereus VDM022]
gi|423670125|ref|ZP_17645154.1| hypothetical protein IKO_03822 [Bacillus cereus VDM034]
gi|423673668|ref|ZP_17648607.1| hypothetical protein IKS_01211 [Bacillus cereus VDM062]
gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
gi|401080115|gb|EJP88405.1| hypothetical protein IC3_03690 [Bacillus cereus VD142]
gi|401150354|gb|EJQ57813.1| hypothetical protein IEW_04345 [Bacillus cereus CER057]
gi|401159601|gb|EJQ66984.1| hypothetical protein IG7_04314 [Bacillus cereus HuA2-4]
gi|401162238|gb|EJQ69596.1| hypothetical protein IEY_00985 [Bacillus cereus CER074]
gi|401232832|gb|EJR39330.1| hypothetical protein IIG_00332 [Bacillus cereus VD048]
gi|401237607|gb|EJR44058.1| hypothetical protein III_00948 [Bacillus cereus VD078]
gi|401297485|gb|EJS03094.1| hypothetical protein IKO_03822 [Bacillus cereus VDM034]
gi|401302504|gb|EJS08083.1| hypothetical protein IKM_00993 [Bacillus cereus VDM022]
gi|401310533|gb|EJS15849.1| hypothetical protein IKS_01211 [Bacillus cereus VDM062]
gi|402431015|gb|EJV63087.1| hypothetical protein IEU_04347 [Bacillus cereus BtB2-4]
gi|402447586|gb|EJV79436.1| hypothetical protein IG3_04159 [Bacillus cereus HuA2-1]
Length = 265
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+ K +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDNKALFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|406983589|gb|EKE04759.1| hypothetical protein ACD_20C00007G0020 [uncultured bacterium]
Length = 266
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K+R + G ++EG + + +AL +NL+++ +F SQ D K L + ++V +
Sbjct: 18 LQQKKKRNELGLFLIEGYKGVSEALSSNLQIESIFISQ-DFDKSLAGFAEDKIYKVPEQV 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S TPP I+ + I + + PL ++ +NI+DPGN+G+I+R A
Sbjct: 77 LKKISTTQTPPEIVAVAHQLKFSIKDLFISDNPLILLLENIKDPGNLGTIIRTAKAGNVS 136
Query: 124 QVVCSRGCVDIYDNKVIRAAA 144
++ + VDIY+ K +R++A
Sbjct: 137 GIILTEETVDIYNPKTVRSSA 157
>gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase SpoU [Bacillus weihenstephanensis
KBAB4]
gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
KBAB4]
Length = 254
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+ K +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDNKALFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 133 AVVLGEGCVDVYNSKVLRST 152
>gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
Length = 265
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+ K +EG ++ +ALKA + +++ Q D+ K+ + DV + V
Sbjct: 29 LQTKKERDNKALFFVEGFHLVEEALKAGVVTELIVSDQTDLPKDWTV-NDVEMYIVPEAI 87
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E +A D L L D ++DPGN+G+I+R A G
Sbjct: 88 VKVLRETETTQGVFAVCEKHEKEVALTDGKFLLL----DGLQDPGNLGTIIRTADAAGIH 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD+Y++KV+R+
Sbjct: 144 AVVLGEGCVDVYNSKVLRST 163
>gi|418620576|ref|ZP_13183380.1| RNA methyltransferase, TrmH family [Staphylococcus hominis VCU122]
gi|374822706|gb|EHR86726.1| RNA methyltransferase, TrmH family [Staphylococcus hominis VCU122]
Length = 246
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWS 68
+R+K G ++EG ++ +A K+N+ +K +F + + L + ++ K + S
Sbjct: 23 ERDKTGLALIEGIHLIDEAFKSNIMIKQLFVIEPERTDSRLLEYAKEAYEINMKVAESLS 82
Query: 69 DLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCS 128
+TP G + E P H I+ ++ D I+DPGN+G+++R A G VV
Sbjct: 83 GTITPQGFFAVIEKPKHDISKAKQV-----LLLDRIQDPGNLGTLIRTADAAGIDMVVME 137
Query: 129 RGCVDIYDNKVIRAA 143
+G D Y +KV+RA+
Sbjct: 138 KGTADAYQDKVMRAS 152
>gi|314936683|ref|ZP_07844030.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
hominis C80]
gi|313655302|gb|EFS19047.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
hominis C80]
Length = 246
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWS 68
+R+K G ++EG ++ +A K+N+ +K +F + + L + ++ K + S
Sbjct: 23 ERDKTGLALIEGIHLIDEAFKSNIMIKQLFVIEPERTDSRLLEYAKEAYEINMKVAESLS 82
Query: 69 DLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCS 128
+TP G + E P H I+ ++ D I+DPGN+G+++R A G VV
Sbjct: 83 GTITPQGFFAVIEKPKHNISKAKQV-----LLLDRIQDPGNLGTLIRTADAAGIDMVVME 137
Query: 129 RGCVDIYDNKVIRAA 143
+G D Y +KV+RA+
Sbjct: 138 KGTADAYQDKVMRAS 152
>gi|228476265|ref|ZP_04060967.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
gi|228269668|gb|EEK11170.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
Length = 246
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWS 68
+R+K G ++EG ++ +A K+N+ +K +F + + L + ++ K + S
Sbjct: 23 ERDKTGLALIEGIHLIDEAFKSNIMIKQLFVIEPERTDSRLLEYAKEAYEINMKVAESLS 82
Query: 69 DLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCS 128
+TP G + E P H I+ ++ D I+DPGN+G+++R A G VV
Sbjct: 83 GTITPQGFFAVIEKPKHDISKAKQV-----LLLDRIQDPGNLGTLIRTADAAGIDMVVME 137
Query: 129 RGCVDIYDNKVIRAA 143
+G D Y +KV+RA+
Sbjct: 138 KGTADAYQDKVMRAS 152
>gi|418637511|ref|ZP_13199830.1| RNA methyltransferase, TrmH family [Staphylococcus lugdunensis
VCU139]
gi|374838757|gb|EHS02292.1| RNA methyltransferase, TrmH family [Staphylococcus lugdunensis
VCU139]
Length = 246
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 23/149 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY-- 61
+K +++R+K G ++EG ++ +A ++NL +K +F + PE Q +DY
Sbjct: 18 LKKKRERDKTGQALIEGIHLIEEAYQSNLTIKQLFVIE---------PERTEQALIDYAE 68
Query: 62 -------KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
K + S +TP G + E P + + ++ D I+DPGN+G+++
Sbjct: 69 ETFQINMKVAEALSGTITPQGFFAVIEKPNYDVTHAKQV-----LLIDRIQDPGNLGTLI 123
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +V +G D Y +KV+RA+
Sbjct: 124 RTADAAGIDLIVMEKGTADAYQDKVLRAS 152
>gi|254495075|ref|ZP_05107999.1| SpoU rRNA methylase [Polaribacter sp. MED152]
gi|85819425|gb|EAQ40582.1| SpoU rRNA methylase [Polaribacter sp. MED152]
Length = 242
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVF-FSQWDILKELPLPEDVPQHRVDYK 62
+ +K REK G + EG +++ + L+ +LK+ +F +D L EDV R+
Sbjct: 14 LSQKKYREKHGLFIAEGVKVVEELLQFSLKVMQLFALDGYD----LEGYEDVVT-RISEA 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ S L +P ++G+F++P L L D I DPGN+G+I+R+C G
Sbjct: 69 ELKKISKLKSPNKVVGLFKIPDEQQLQHKGFILAL----DEINDPGNLGTIIRLCDWFGV 124
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+Q+VCS+ VD Y+ KV++A+
Sbjct: 125 QQLVCSKNTVDCYNQKVVQAS 145
>gi|374602503|ref|ZP_09675495.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus dendritiformis
C454]
gi|374391928|gb|EHQ63258.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus dendritiformis
C454]
Length = 285
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 12/152 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW-DILKELPLPEDVPQHRVDYK 62
++ RK R+++G ++EG ++ +AL + ++ V + DI EL D P+
Sbjct: 22 LRERKGRKQEGCFLVEGIHLVQEALASGAPVEAVLCDEARDIPTELMPYADAPRPAAAGG 81
Query: 63 NIQLW-----------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMG 111
W S+ TP +I + PA ++ A +PL + D ++DPGN+G
Sbjct: 82 GQPEWIGVTDAIIRKLSETETPQPVIAVVRKPALEPGTLFGADMPLVVAVDGVQDPGNLG 141
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+I+R AVGA VV RG VD+Y+ K +R+
Sbjct: 142 TIIRSADAVGATGVVLGRGTVDVYNAKTVRST 173
>gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255]
Length = 265
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WDILKE-LPLPEDVPQ-----HRVD 60
K R K+ ++EG RI++ AL+ L VF ++ ++ KE + L ED+ + ++
Sbjct: 23 KNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHVKLLEDLDKKNTKIYKTT 82
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
KN + D GIIG+ ++ ++ D I+DPGNMG+I+R +
Sbjct: 83 NKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKFVLILDRIQDPGNMGTIIRTADSA 142
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++ +GCVDIY+ KVIR+
Sbjct: 143 GVDAIIALKGCVDIYNPKVIRST 165
>gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26]
gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932]
gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55]
gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34]
gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79]
gi|260682395|ref|YP_003213680.1| RNA methylase [Clostridium difficile CD196]
gi|260685994|ref|YP_003217127.1| RNA methylase [Clostridium difficile R20291]
gi|384359975|ref|YP_006197827.1| RNA methylase [Clostridium difficile BI1]
gi|423090074|ref|ZP_17078414.1| RNA methyltransferase, TrmH family, group 3 [Clostridium difficile
70-100-2010]
gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196]
gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291]
gi|357557171|gb|EHJ38728.1| RNA methyltransferase, TrmH family, group 3 [Clostridium difficile
70-100-2010]
Length = 265
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WDILKE-LPLPEDVPQ-----HRVD 60
K R K+ ++EG RI++ AL+ L VF ++ ++ KE + L ED+ + ++
Sbjct: 23 KNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHVKLLEDLDKKNTKIYKTT 82
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
KN + D GIIG+ ++ ++ D I+DPGNMG+I+R +
Sbjct: 83 NKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKFVLILDRIQDPGNMGTIIRTADSA 142
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++ +GCVDIY+ KVIR+
Sbjct: 143 GVDAIIALKGCVDIYNPKVIRST 165
>gi|423082178|ref|ZP_17070773.1| RNA methyltransferase, TrmH family [Clostridium difficile
002-P50-2011]
gi|423085801|ref|ZP_17074240.1| RNA methyltransferase, TrmH family [Clostridium difficile
050-P50-2011]
gi|357548923|gb|EHJ30777.1| RNA methyltransferase, TrmH family [Clostridium difficile
050-P50-2011]
gi|357549428|gb|EHJ31275.1| RNA methyltransferase, TrmH family [Clostridium difficile
002-P50-2011]
Length = 265
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WDILKE-LPLPEDVPQ-----HRVD 60
K R K+ ++EG RI++ AL+ L VF ++ ++ KE + L ED+ + ++
Sbjct: 23 KNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHVKLLEDLDKKNTKIYKTT 82
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
KN + D GIIG+ ++ ++ D I+DPGNMG+I+R +
Sbjct: 83 NKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKFVLILDRIQDPGNMGTIIRTADSA 142
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++ +GCVDIY+ KVIR+
Sbjct: 143 GVDAIIALKGCVDIYNPKVIRST 165
>gi|251780637|ref|ZP_04823557.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084952|gb|EES50842.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 262
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDY 61
+K RK R K ++EG R++ +A++ANL ++ ++ ++ L + + +H+V
Sbjct: 18 LKDRKNRNKINKYVIEGFRLVDEAIRANLDIEYFILTEIGYEKLDNYIDKDKMKKHKVFC 77
Query: 62 KNIQLWSDLVT---PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
L+ +L + P GII I ++ + + CD ++DPGN+G+I+R
Sbjct: 78 ITDTLFKELASTENPQGIIAIVKMDNKNL----NFQGDFYLFCDKVQDPGNLGTIIRTAH 133
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V S+G VDIY+ K IR+
Sbjct: 134 AAGVNGIVLSKGTVDIYNEKTIRST 158
>gi|146299225|ref|YP_001193816.1| tRNA/rRNA methyltransferase SpoU [Flavobacterium johnsoniae UW101]
gi|146153643|gb|ABQ04497.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
UW101]
Length = 242
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR EG +++ + L++N +L+ + + L + + + ++ +
Sbjct: 13 LHQKKQRFANQLFFAEGVKVIQELLQSNFELEHL----YTTLNDFEEVQSSKRTLINEQE 68
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L TP + +F++P I + L L D+IRDPGN+G+I+R+C G +
Sbjct: 69 LKKISALTTPNSCLAVFKMPVEN--QIINSGLIL--ALDDIRDPGNLGTIMRLCDWFGIK 124
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q+VCS+ VDIY+ KV++A
Sbjct: 125 QIVCSKETVDIYNPKVVQAT 144
>gi|289551058|ref|YP_003471962.1| SpoU rRNA methylase [Staphylococcus lugdunensis HKU09-01]
gi|385784679|ref|YP_005760852.1| SpoU rRNA methylase family protein [Staphylococcus lugdunensis
N920143]
gi|418414354|ref|ZP_12987569.1| hypothetical protein HMPREF9308_00734 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180590|gb|ADC87835.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
HKU09-01]
gi|339894935|emb|CCB54239.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
N920143]
gi|410876961|gb|EKS24858.1| hypothetical protein HMPREF9308_00734 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 246
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++NL +K +F + + ++ + +++ K
Sbjct: 18 LKKKRERDKTGQALIEGIHLIEEAYQSNLTIKQLFIIEPERTEQALIDYSEETFQINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S +TP G + E P + + ++ D I+DPGN+G+++R A G
Sbjct: 78 AEALSGTITPQGFFAVIEKPNYDVTHAKQV-----LLIDRIQDPGNLGTLIRSADAAGID 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D Y +KV+RA+
Sbjct: 133 LIVMEKGTADAYQDKVLRAS 152
>gi|187934593|ref|YP_001886663.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
Eklund 17B]
gi|187722746|gb|ACD23967.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
Eklund 17B]
Length = 260
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 9/145 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDY 61
+K RK R K ++EG R++ +A+KA+L + + +Q ++ L + + + +V
Sbjct: 18 LKERKNRNKINKYVIEGFRLVDEAIKASLDIDYLILTQVGYEKLDNYINKDKIEKQKVYC 77
Query: 62 KNIQLWSDLVT---PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
L+ DL + P GII I + + + CD ++DPGN+G+I+R
Sbjct: 78 ITDNLFKDLTSTENPQGIIAIVNMENKNL----DFQGDFYLFCDKVQDPGNLGTIIRTAH 133
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++ S+G VDIY+ K IR+
Sbjct: 134 AAGVNGIILSKGTVDIYNEKTIRST 158
>gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase SpoU [Acidaminococcus fermentans DSM
20731]
gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
20731]
Length = 260
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ----WDILKELPLPEDVPQHRV 59
+K +K R+K+G +LEGKR + +AL + ++ +FF++ W+ E +P + V
Sbjct: 19 LKMKKYRQKEGLFLLEGKRAVEEALASGWTIRALFFTRLPEGWEQQAE---NSSLPWYEV 75
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+Q + P + + EL +A+ P + +V D IRDPGN+G+++R A
Sbjct: 76 PLPVLQKITATEDPQSVAALVELRREELAAFAPER-GMVLVLDRIRDPGNLGTLIRTADA 134
Query: 120 VGARQVVCSRGCVDIYDNKVIRA 142
+GA VV D+Y+ KV+R+
Sbjct: 135 LGAAGVVLLENTADLYNPKVVRS 157
>gi|358256684|dbj|GAA57899.1| RNA methyltransferase-like protein 1B, partial [Clonorchis
sinensis]
Length = 125
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 16 LMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ-HRVDYKNIQLWSDLVTPP 74
++LEG++++IDAL + + ++FS L+ L E + + V + +Q +S L T P
Sbjct: 4 VVLEGEQLIIDALASGGHVHSLYFSSRQALQRLTSTERIENIYHVPHNILQRFSSLKTCP 63
Query: 75 GIIGIFELPAHPIASIDPAS------LPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCS 128
G++ IFE+P + + S LP +V + IRDPGNMGS+LR A+ G V+ S
Sbjct: 64 GLLAIFEVPDPAVLTTRYLSHGLWRPLPATLVLNGIRDPGNMGSLLRTAASFGLSSVLVS 123
Query: 129 RG 130
G
Sbjct: 124 EG 125
>gi|260892439|ref|YP_003238536.1| tRNA/rRNA methyltransferase SpoU [Ammonifex degensii KC4]
gi|260864580|gb|ACX51686.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4]
Length = 266
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 84/154 (54%), Gaps = 14/154 (9%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
++ + +K REK G ++EG ++ +AL+ K++ ++ + P E++ + +
Sbjct: 15 LLRLAQKKGREKAGEFLVEGPHLVAEALRHG-KVRALYLTPE--FASSPEGEEL-IRKAE 70
Query: 61 YKNIQLW----------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNM 110
+ ++++ +D TP G++ + E+P+ + S+ LPL ++ D ++DPGN+
Sbjct: 71 ARKVEVFGLAPQLLARAADTATPQGVLAVVEMPSASLPSLLQVELPLLVIVDGLQDPGNL 130
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
G+I+R AV A VV +G VD + + +RA A
Sbjct: 131 GTIVRTAQAVAATGVVVLKGSVDPFHPRAVRATA 164
>gi|374297298|ref|YP_005047489.1| rRNA methylase, putative, group 3 [Clostridium clariflavum DSM
19732]
gi|359826792|gb|AEV69565.1| rRNA methylase, putative, group 3 [Clostridium clariflavum DSM
19732]
Length = 267
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW--------DILKELPLPEDVP 55
+K +K R++KG +EG R + +A+K + V S+ +ILK L +
Sbjct: 18 LKEKKYRDQKGLYFIEGIRFIEEAIKEKELISKVLVSEKIKEVKGGKEILKLLEEEKIGN 77
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGSIL 114
+ V K +D P GI+ + + + S+ D + +V D+I+DPGNMG+I+
Sbjct: 78 IYTVPNKLYLEVTDTENPQGILAVMRKKSVSVESVYDDKNFF--VVLDSIQDPGNMGTII 135
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A GA V+ S+GCVD+Y+ KV+RA
Sbjct: 136 RTADAAGATAVIVSKGCVDVYNPKVLRAT 164
>gi|358056270|ref|ZP_09147550.1| SpoU rRNA methylase family protein [Staphylococcus simiae CCM 7213]
gi|357256678|gb|EHJ07016.1| SpoU rRNA methylase family protein [Staphylococcus simiae CCM 7213]
Length = 246
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A+K+++ +K +F + L + + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGIHLVEEAVKSDINIKQLFAIEPSRLDQQMIDYAQETYEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + + ++ D I+DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDVTQAKQV-----LLIDRIQDPGNLGTLIRTADAAGID 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|354559947|ref|ZP_08979187.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium
metallireducens DSM 15288]
gi|353539461|gb|EHC08947.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium
metallireducens DSM 15288]
Length = 273
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF------SQWDILKELPLPEDV 54
+V + RK R+ G ++EG R + +A++ +++ ++ W L + +
Sbjct: 24 VVALHKRKTRKDYGEFLIEGWRFIEEAIRREAEIRQIYVCPEKEKGYWSSLYSVLRERKI 83
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
P VD + ++ S+ P GI+ + L + ++ S + ++ D I+DPGN+G+IL
Sbjct: 84 PILEVDERVLRKMSETEEPQGILAVVGLKSLSWKDLEVDSKTVLLIVDGIQDPGNLGTIL 143
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G +QV + G VD+Y+ KV+R+
Sbjct: 144 RTALAAGVQQVCLTTGTVDLYNPKVLRST 172
>gi|148381081|ref|YP_001255622.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
ATCC 3502]
gi|153930840|ref|YP_001385454.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
gi|153936028|ref|YP_001388861.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
gi|168179627|ref|ZP_02614291.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
2916]
gi|148290565|emb|CAL84694.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
gi|152926884|gb|ABS32384.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
ATCC 19397]
gi|152931942|gb|ABS37441.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
Hall]
gi|182669725|gb|EDT81701.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
2916]
Length = 259
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
++ +K R + ++EG R +ALK+N + VF + ++ K+ + D+ +
Sbjct: 16 LREKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETY 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V Y ++ + P GI+ + + I+ D ++DPGNMG+I+R
Sbjct: 76 VVSYSVLKSIGNTENPQGIVSVINYFKKEKLDLQNG---FYILVDKVQDPGNMGTIIRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA ++ ++G VDIY+ K +R+
Sbjct: 133 HAAGALGIITTKGTVDIYNEKTLRST 158
>gi|302389955|ref|YP_003825776.1| TrmH family RNA methyltransferase [Thermosediminibacter oceani DSM
16646]
gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
oceani DSM 16646]
Length = 265
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK----ELPLPEDVPQHRVDYK 62
+ R++ G ++EG R +AL ++ ++ + S D L+ ++ E++ + V K
Sbjct: 21 KNYRKRHGLFLVEGLRATEEALNSDYLVEFLVVSD-DFLERHREKIKEYENIKVYEVPRK 79
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
SD P GI+ + + H + SI + L + D I+DPGN+G+I+R A GA
Sbjct: 80 VYDTLSDTEAPQGIMAVVRMKNHELTSIYEDNF-LIVALDGIKDPGNIGTIIRTADAAGA 138
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
++ +GCVDIY+ KV+R+
Sbjct: 139 SGILAGKGCVDIYNPKVVRST 159
>gi|226950562|ref|YP_002805653.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
Kyoto]
gi|226840837|gb|ACO83503.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
Kyoto]
Length = 259
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
++ +K R + ++EG R +ALK+N + VF + ++ K+ + D+ +
Sbjct: 16 LREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETY 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V+Y ++ + P GI+ + + I+ D ++DPGNMG+I+R
Sbjct: 76 VVNYFVLKSIGNTENPQGIVSVINYFKKEKLDLQNG---FYILVDKVQDPGNMGTIIRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA ++ ++G VDIY+ K +R+
Sbjct: 133 HAAGALGIITTKGTVDIYNEKTLRST 158
>gi|149280368|ref|ZP_01886489.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
gi|149228917|gb|EDM34315.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
Length = 249
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 82/142 (57%), Gaps = 4/142 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF-SQWDILKELP-LPEDVPQHRVDY 61
+ +K R++ G ++EG + + + ++++ ++ +++ +Q+ L LP LP ++ V+
Sbjct: 13 LHQKKYRKENGIFIIEGIKSIAEFIQSSYQVHSIYYLAQYQSL--LPSLPANIKLFEVNN 70
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
++ S L TP GI+ + +P I+ ++V D+++DPGN+G+I+R G
Sbjct: 71 AELEKISTLQTPQGILALVNIPKTSGLDIELLKGNFSLVLDDVQDPGNLGTIIRTAEWFG 130
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
RQ++CS V++Y+ K ++A
Sbjct: 131 FRQIICSPHTVEVYNPKTVQAT 152
>gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4]
Length = 281
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 81/143 (56%), Gaps = 9/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K R+K G ++EG ++ +ALKA ++++ ++ +L PL +V ++ + +
Sbjct: 48 LHTKKGRDKAGRFLIEGFHLVEEALKAKFHIEVILMTEQTVL---PLTWEVYENDIIIVS 104
Query: 64 IQLW---SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
Q+ S+ TP GI + +PA P + ++ D ++DPGN+G+++R A
Sbjct: 105 PQVLKEISETETPQGIAAVCAIPAPPSMTTLSGQF---LLIDRVQDPGNIGTMIRTADAA 161
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G VV G VD++++KVIRA+
Sbjct: 162 GMTGVVLGEGSVDLFNSKVIRAS 184
>gi|373956439|ref|ZP_09616399.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
18603]
gi|373893039|gb|EHQ28936.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
18603]
Length = 249
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 74/140 (52%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+ G + EG + + + + ++ K++ ++ + + K L L + + +
Sbjct: 13 LQQKKIRKTHGLFLAEGIKSITEFINSDYKIETIYHTPSFVPKLLNLSQKINFIECPATD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ +S L TP +I + ++P P+ +IV D I+DPGN+G+I+R G +
Sbjct: 73 LAKFSSLTTPQEVIALIKIPTWPVLETKILQQSFSIVLDGIQDPGNLGTIIRTADWFGIQ 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++CS VD Y+ KV++A
Sbjct: 133 NIICSEDTVDAYNAKVVQAT 152
>gi|366164702|ref|ZP_09464457.1| RNA methyltransferase [Acetivibrio cellulolyticus CD2]
Length = 267
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW--------DILKELPLPEDVP 55
+K +K R++ G +EG R + +ALK +++ + S +IL++L
Sbjct: 18 LKEKKYRDQTGLFFIEGIRFVEEALKEKIEISKILVSDKLADVHGGKEILEQLENSNCCN 77
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGSIL 114
+ + K +D P GI+ I + + S+ D + L V D+++DPGNMG+I+
Sbjct: 78 VYTLTNKLYMEVTDTENPQGILAILNKKSISLESVYDNKNFFL--VLDSLQDPGNMGTII 135
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G V+ S+GCVD+Y+ KV+R+
Sbjct: 136 RTADAAGVTGVIVSKGCVDVYNPKVLRST 164
>gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase SpoU [Bacillus cytotoxicus NVH 391-98]
gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH
391-98]
Length = 254
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K+R+KKG +EG ++ +ALKA++ +++ Q D+ K+ + DV + V
Sbjct: 18 LQTKKERDKKGLFFVEGFHLVEEALKADIVTELIVSDQTDLPKDW-IVSDVEMYIVPEPI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+++ + T G+ + E + + L L D ++DPGN+G+I+R A G
Sbjct: 77 VKVLRETETTQGVFAVCEKQEKEVELSNGKFLLL----DGLQDPGNLGTIIRTADAAGVH 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV GCVD Y++KV+R+
Sbjct: 133 AVVLGEGCVDAYNSKVLRST 152
>gi|409123849|ref|ZP_11223244.1| TrmH family tRNA/rRNA methyltransferase [Gillisia sp. CBA3202]
Length = 232
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 15/143 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ---HRVD 60
M +K R K G ++EGK+ + + L++N++L ++ +Q +I + PQ H +
Sbjct: 1 MSKKKHRSKTGLFVVEGKKGIEELLESNIELDSLYTTQ-EIF-------NAPQQKTHLIS 52
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ S L TP + IF++P ++ L I D IRDPGN+G+I+R+C
Sbjct: 53 EVELKKISRLKTPQIGLAIFKIPIETEIKLEG----LVIALDGIRDPGNLGTIIRLCDWF 108
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++CS VD Y++KV++A
Sbjct: 109 GVETLICSLDTVDCYNSKVVQAT 131
>gi|295398832|ref|ZP_06808826.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
gi|294972922|gb|EFG48755.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
Length = 264
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 79/141 (56%), Gaps = 5/141 (3%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFF----SQWDILKELPLPEDVPQHRVDY 61
+RK R+K G +LEG ++ A+KA+ +++M+++ S ++++ L D+P +V
Sbjct: 22 TRKGRKKAGQYLLEGPHLVEMAVKADAEIQMIYYVPESSHQNVMQIQALKADLPLTQVTP 81
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
+ + S I + +P ID + L ++ D ++DPGN+G+++R A G
Sbjct: 82 EVAKALSQTDHHQDIFAVANIPQAKSLDIDQLTKGL-LILDQVQDPGNLGTLIRTADAFG 140
Query: 122 ARQVVCSRGCVDIYDNKVIRA 142
R V+ G VD+Y++KV+R+
Sbjct: 141 YRDVLLGLGTVDLYNDKVLRS 161
>gi|227537933|ref|ZP_03967982.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227242235|gb|EEI92250.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 249
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R++ ++EG + + + L + + +F++ K + +P ++ + +
Sbjct: 13 LQHKKFRKQHSLFVVEGIKSVTEFLSSAYDVHALFYTANVTTKVVKIPHNIKSYELTDNE 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPI-ASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
S L +P GI+ + LP +D A+ +V D+++DPGN+G+I+R G
Sbjct: 73 FSKISQLKSPQGILALVRLPEEKTPEQLDFAN-QFTLVLDDVQDPGNLGTIIRTAEWFGF 131
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ +VCS G VD Y+ KV++A
Sbjct: 132 KHIVCSAGTVDAYNPKVVQAT 152
>gi|410459260|ref|ZP_11313012.1| 23S rRNA methyltransferase [Bacillus azotoformans LMG 9581]
gi|409930453|gb|EKN67452.1| 23S rRNA methyltransferase [Bacillus azotoformans LMG 9581]
Length = 251
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF---SQWDILKELPLPEDVPQHRVD 60
++++K+R K G ++EG ++ +ALK +K + +++ +L D+ V
Sbjct: 19 LQTKKERNKTGLFLIEGLHLIEEALKYKAYVKELIVREGTEYSLLD----ARDIDIFEVT 74
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ SD TP GI + + +I A L ++ DN++DPGN+G+++R AV
Sbjct: 75 EDIMNTISDTETPQGIAAVCGMKGPTPINIATAKL---LLIDNVQDPGNLGTMIRTADAV 131
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G V+ GCVD+Y+ KVIR+
Sbjct: 132 GMDAVILGEGCVDLYNGKVIRST 154
>gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
Length = 246
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL-PEDVPQHRVDYK 62
+ RK+R K +++G ++ +ALK+N ++ + + ELP +DVP V
Sbjct: 16 LHRRKERLKTNTFLIDGIHLIQEALKSNWVIQELIVVEG---YELPNDAKDVPVAYVSEN 72
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ S TP G+I + E+ + + L I+ D I+DPGNMG+I+R A G
Sbjct: 73 VLKEISQTQTPQGVIAVVEMNIPKVQEDNN----LIILLDAIQDPGNMGTIIRTADAAGV 128
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
VV GCVDI+++KVIRA
Sbjct: 129 DAVVLGDGCVDIFNDKVIRAT 149
>gi|336436170|ref|ZP_08615883.1| hypothetical protein HMPREF0988_01468 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336008210|gb|EGN38229.1| hypothetical protein HMPREF0988_01468 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 211
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMV---FFSQWDI-LKELPLPEDVPQHRVD 60
K + R + G ++EG R++ + K L+ V F+ ++ L+ E V
Sbjct: 18 KKSRARNQAGIFLVEGLRMIQEVPKDRLEKLYVSEGFYQKYRAELEAEGFTERTGIELVS 77
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
SD TP G++GI + ++ + P +V DN++DPGN+G+I R A
Sbjct: 78 DHVFAAMSDTKTPQGVLGIVRRAEYTAETLMGQAAPFLMVLDNLQDPGNLGTIFRTAEAA 137
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G +V SR CVDIY+ K IR+
Sbjct: 138 GVTGIVMSRDCVDIYNPKTIRST 160
>gi|374307490|ref|YP_005053921.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896]
gi|291166497|gb|EFE28543.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896]
Length = 266
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS------QWDILKELPLPEDVPQH 57
+ +K R+K ++EG R ++ A + N+ +K +F S + D+ E+ ++
Sbjct: 21 LNKQKFRKKHSLFLIEGTRAVLQAKENNITIKYIFVSDDFRKKRDDVWNEINCSMITEKY 80
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+D SD V G+IG+ E+P + SI ++ D I+DPGN G+I+R
Sbjct: 81 ILDDNLFSKLSDTVASQGVIGMCEIPKYDAKSILSKEKSFILLLDQIQDPGNFGTIIRTS 140
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G + ++G VD + KV RA+
Sbjct: 141 LAYGIDAIFFTKGSVDSFSPKVTRAS 166
>gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
group 1 bacterium phylotype Rs-D17]
gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
group 1 bacterium phylotype Rs-D17]
Length = 255
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 21/148 (14%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K R+K G +EGK+ + + K N +K +F S+ DV + KN
Sbjct: 17 LQNKKLRDKNGLFFVEGKKQIYEIPK-NRTIKQIFISE-------KYKNDV----TNLKN 64
Query: 64 I-----QLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
+ L+S L +P GI+ I E + + I S L I+ +NI+DPGN+G+I+R
Sbjct: 65 VIMLSNHLFSKLSATKSPQGIMAIVEKKYYAVEDIIKNS-GLFILLENIQDPGNLGTIIR 123
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA+ V S+G DIY +K IRA
Sbjct: 124 SADAFGAKAVFVSKGSADIYSDKTIRAT 151
>gi|397690409|ref|YP_006527663.1| tRNA/rRNA methyltransferase (SpoU) [Melioribacter roseus P3M]
gi|395811901|gb|AFN74650.1| tRNA/rRNA methyltransferase (SpoU) [Melioribacter roseus P3M]
Length = 261
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 16 LMLEGKRILIDALKANLKLKMVFFS-----QWDILKELPLPEDVPQHRVDYKNIQLWSDL 70
++EG +++ +A+ + + ++VF++ ++ +E + + K ++ SD
Sbjct: 33 FLVEGAKLIREAIDSEFRCEIVFYTNQFEEKFGEFQEYLKSKGCKSELISQKELEKLSDT 92
Query: 71 VTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRG 130
+P GIIGIF ++ +P L + ++I DPGNMG+I+R G ++++ S+
Sbjct: 93 ESPQGIIGIFNEKTDFLSHSNPKFL---LALEDISDPGNMGAIIRNADWFGLKKIIASKD 149
Query: 131 CVDIYDNKVIRAAA 144
C +IY+ KVIRA+A
Sbjct: 150 CAEIYNPKVIRASA 163
>gi|302874885|ref|YP_003843518.1| tRNA/rRNA methyltransferase SpoU [Clostridium cellulovorans 743B]
gi|307690498|ref|ZP_07632944.1| RNA methyltransferase, TrmH family [Clostridium cellulovorans 743B]
gi|302577742|gb|ADL51754.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
Length = 259
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 15/148 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +K R +KG ++EG R + +A+K++ +K +F + L++L ++ R+ + N
Sbjct: 18 LKEKKYRIEKGLFLVEGFRFVEEAVKSSFIIKSIFIDE-KALEKLS-DYNIETERI-HAN 74
Query: 64 I-----QLW---SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
I Q++ S TP GII + E + + I D ++DPGNMG+I+R
Sbjct: 75 IYIIPSQIFKTISTTETPQGIIAVVENKEFAVKN----EKGFYIYADKVQDPGNMGTIIR 130
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ S+G VDIY+ K +R+
Sbjct: 131 TAHASGALGVIYSQGTVDIYNEKTLRST 158
>gi|320449193|ref|YP_004201289.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
gi|320149362|gb|ADW20740.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
Length = 257
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+ +K R++RE+ G ++EG+R + L+A L+L+ + ++ L P +
Sbjct: 14 LAALKERRERERTGLFLVEGRREVERTLRAGLQLETLLLGPKATPEDQALAGSAPTLELS 73
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ ++ S PP +IG+F LP + + PL +V + PGN+G+ILR
Sbjct: 74 QEAMERVSVRENPPPVIGVFRLPHKTLKEVQLPQDPLVLVLLGLEKPGNLGAILRSADGA 133
Query: 121 GARQVVCSRGCVDIYDNKVIR 141
G V+ + G VD+Y +VIR
Sbjct: 134 GVDLVLVAEG-VDLYSPQVIR 153
>gi|366053003|ref|ZP_09450725.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus suebicus KCTC 3549]
Length = 258
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP--LPEDVPQHRVDYKN 63
+RKQR+K G +L+G ++ +AL AN+ +K + + D L+E + D P + V +
Sbjct: 20 TRKQRKKTGTYLLDGWHLINEALTANVNVKSLIITS-DQLEEHDDIVTRDFPIYEVTDEI 78
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ +D VTP GI ELP I +S + D ++DPGN+G+++R A G
Sbjct: 79 MRAITDTVTPQGIAAEVELPTDQF-DIPESSRGAWLFLDQVQDPGNIGTMVRTADAAGFT 137
Query: 124 QVVCSRGCVDIYDNKVIRA 142
VV D+Y KV+R+
Sbjct: 138 GVVAGSKTADLYSPKVVRS 156
>gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum acetoxidans DSM
771]
gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
DSM 771]
Length = 266
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 3 YMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS----QWDILKELP---LPEDVP 55
++ R+ RE +G ++EG R + +AL + + ++ V +S Q + KEL +VP
Sbjct: 16 HLAKRRFRETEGKFIIEGVRFVEEALASAMSVEAVIYSAKLFQNNRGKELLECIYKSNVP 75
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFE-LPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V ++ SD TP G++ + + +P + L ++ D I+DPGN+G+I+
Sbjct: 76 FWEVTEPILESLSDTATPQGVVAVIKSVPTGLQEILTRVKKQLLVLVDGIQDPGNLGTII 135
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G V+ SRG VD+Y+ K +RA
Sbjct: 136 RTSDAAGVDAVILSRGTVDLYNPKTLRAT 164
>gi|312143805|ref|YP_003995251.1| tRNA/rRNA methyltransferase SpoU [Halanaerobium hydrogeniformans]
gi|311904456|gb|ADQ14897.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium hydrogeniformans]
Length = 267
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVF----FSQWDILKEL--PLPEDVPQHRVDY 61
+ R K+G +LEGKR++ A + VF F + D K+L L V V
Sbjct: 23 RTRRKEGVFVLEGKRLIEAASAGGADFERVFLSPAFFKADKNKDLIDKLQNRVSLDLVSE 82
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
+ ++ + V P GII I + P + + + ++ D I+DPGNMG+++R AA G
Sbjct: 83 ELLKETAATVNPQGIIAIVKEPNYSSEKFFKTADKI-LLLDRIQDPGNMGTMIRTAAAAG 141
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
V+ +G VDIY+ KVIRA+
Sbjct: 142 FEAVIALKGSVDIYNQKVIRAS 163
>gi|383449805|ref|YP_005356526.1| tRNA/rRNA methyltransferase [Flavobacterium indicum GPTSA100-9]
gi|380501427|emb|CCG52469.1| Probable tRNA/rRNA methyltransferase [Flavobacterium indicum
GPTSA100-9]
Length = 242
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+ + EG++++ + + A+ +L +F +Q I + P +
Sbjct: 13 LQQKKYRKIHQLFIAEGRKVISELIHADFELVSLFVTQEGIFEN-----KWPSTLISESE 67
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L TP + +F++ +S D L L D IRDPGNMG+I+R+C G +
Sbjct: 68 LKKISALTTPNDCLAVFKIKEIKFSSEDQLILAL----DTIRDPGNMGTIIRLCDWFGIQ 123
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++VCS VDIY+ KV++A
Sbjct: 124 KIVCSPETVDIYNPKVVQAT 143
>gi|431792227|ref|YP_007219132.1| rRNA methylase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782453|gb|AGA67736.1| rRNA methylase [Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 278
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 19/162 (11%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF------SQWDILKELPLPEDV 54
+V + RK RE+ G ++EG R + + ++ + VF W L+++ +V
Sbjct: 13 VVNLHKRKFREETGEFLIEGWRFVEEGVRRGADITKVFVCPERCNEVWPHLEQVLKENEV 72
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGI----------FE---LPAHPIASIDPASLPLNIVC 101
P V+ + ++ SD P GI+ I FE + S DP LP+ ++
Sbjct: 73 PVIEVEERVLRKMSDTENPQGILAIVKQTMWSWNDFERAQASQNLQDSQDPQGLPILLIL 132
Query: 102 DNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
D ++DPGN G+ILR A G QV + G VD+Y+ K +R+
Sbjct: 133 DGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKALRST 174
>gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125]
gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125]
Length = 251
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 21/143 (14%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R++ G ++EG ++ +ALK+ + ++ + + + + LP VD +++ L SD
Sbjct: 24 RDQSGQFLIEGYHLVEEALKSTITIETIL-----VTESVTLP---TAWHVDERDVILVSD 75
Query: 70 LV--------TPPGIIGIFELPAHPIASIDPASLPLNIVC-DNIRDPGNMGSILRVCAAV 120
V TP GI I +P P L +C D+++DPGN+G+++R C A
Sbjct: 76 RVMADLTETKTPQGIAAICHIPDEP----SFQELEGMFLCIDHVQDPGNVGTMIRTCDAA 131
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G V+ S G VDIY++KV+RA+
Sbjct: 132 GMSAVIVSEGSVDIYNSKVVRAS 154
>gi|217970565|ref|YP_002355799.1| tRNA/rRNA methyltransferase SpoU [Thauera sp. MZ1T]
gi|217507892|gb|ACK54903.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
Length = 277
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE------LPLPEDVPQHR 58
S + R K +L+G ++ AL A + L+ + S+ +L+E P +VP++R
Sbjct: 25 HSARDRRKLDETVLDGAHLVESALAAGVALRALVVSESGLLREEHRRLLAAAPAEVPRYR 84
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ S + +P G++ +PA ++ ASL IV D ++DPGN+GS+LR A
Sbjct: 85 LGDALFAHVSPVDSPAGLLATIAMPASTPSAPGDASL---IVVDGVQDPGNLGSLLRTAA 141
Query: 119 AVGARQVVCSRGCVDIYDNKVIRA 142
A G R + GC + + +RA
Sbjct: 142 AAGIRHALLGEGCAQAWSPRALRA 165
>gi|386319592|ref|YP_006015755.1| TrmH family RNA methyltransferase [Staphylococcus pseudintermedius
ED99]
gi|323464763|gb|ADX76916.1| RNA methyltransferase, TrmH family [Staphylococcus pseudintermedius
ED99]
Length = 248
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WDILKEL-PLPEDVPQHRVDYKNIQL 66
+R+K+G +LEG ++ +A+++ +K+ +F + + EL E+V + + K +
Sbjct: 23 ERDKQGLAILEGFHLIEEAVESQIKVTQLFMIEPSRVPTELIEAAEEV--YEITQKVAET 80
Query: 67 WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
S VTP GI I E P +D + ++ D I+DPGN+G+++R A G +V
Sbjct: 81 LSGTVTPQGIFAIIEKP-----QVDVTAAKQVLILDRIQDPGNLGTMIRTADAAGLDLIV 135
Query: 127 CSRGCVDIYDNKVIRAA 143
++G D+Y +KV+RA+
Sbjct: 136 MTKGTADVYQDKVLRAS 152
>gi|374376087|ref|ZP_09633745.1| tRNA/rRNA methyltransferase (SpoU) [Niabella soli DSM 19437]
gi|373232927|gb|EHP52722.1| tRNA/rRNA methyltransferase (SpoU) [Niabella soli DSM 19437]
Length = 244
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 7 RKQREKKGWLMLEGKRILIDALKA-NLKLKMVF-FSQWDILKELPLPEDVPQHRVDYKNI 64
+K R+ +G ++EG +IL +AL A +K +F S+W E P D+ + V +
Sbjct: 16 KKFRDAEGCYLIEGPKILDEALTAAQTAVKKIFGLSEWIDQHEFRYP-DIEMNVVSSFEL 74
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
+ S L TP +I + P + I + + D I+DPGN+G+I+R+ G Q
Sbjct: 75 EKISQLKTPNQVIALMAKPER--SGIVSPQQDIVLALDGIQDPGNLGTIVRIADWFGIPQ 132
Query: 125 VVCSRGCVDIYDNKVIRAA 143
VVCS+ C D+Y KV++AA
Sbjct: 133 VVCSKDCADVYGGKVVQAA 151
>gi|15895625|ref|NP_348974.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
gi|337737574|ref|YP_004637021.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
gi|384459084|ref|YP_005671504.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
gi|15025369|gb|AAK80314.1|AE007736_4 RRNA methylase, YSGA B.subtilis ortholog [Clostridium
acetobutylicum ATCC 824]
gi|325509773|gb|ADZ21409.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
gi|336292011|gb|AEI33145.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
Length = 261
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD----ILKELP--LPEDVPQH 57
+ +K R+ K ++EG R + +AL+++ K++ +F S+ + ILKEL + ++
Sbjct: 19 LNEKKHRDLKKSFIVEGLRFVREALESDFKIQYLFVSEKNYDKFILKELKELIKKEFQVI 78
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+V ++ + TP GI+ + + + ++ D ++DPGNMG+I+R
Sbjct: 79 KVTESILKDICNTQTPQGIVAVVQYKEVAW----KLTKGFYMLVDKVQDPGNMGTIIRTA 134
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ ++G VDIY+NK +RA
Sbjct: 135 NAAGALGVIITKGTVDIYNNKTLRAT 160
>gi|328956925|ref|YP_004374311.1| putative RNA methylase [Carnobacterium sp. 17-4]
gi|328673249|gb|AEB29295.1| putative RNA methylase [Carnobacterium sp. 17-4]
Length = 261
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++SR+ R+K G ++EG ++ +ALK + + + S+ ++ ++P ++ Q + +
Sbjct: 24 LQSRRGRQKAGAYLIEGFHLIEEALKNHAIILEIMISEEVVVGDIPEFDEAKQVEISTEI 83
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPL----NIVCDNIRDPGNMGSILRVCAA 119
+L S+ T GI + + ID P+ + DN++DPGN+G+++R A
Sbjct: 84 AKLLSETETSQGIFAV-------VKKIDQLDKPILTKPFLFLDNVQDPGNVGTMVRTADA 136
Query: 120 VGARQVVCSRGCVDIYDNKVIRA 142
G VV +G VD+Y++KV+R+
Sbjct: 137 AGFGGVVLGKGSVDLYNSKVLRS 159
>gi|212638387|ref|YP_002314907.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
gi|212559867|gb|ACJ32922.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
Length = 254
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQ 65
++K+REK G ++EG ++ +ALK+N+ ++++ S+ + + +P V I
Sbjct: 25 TKKEREKTGLFLVEGFHLVEEALKSNI-VELLIVSETKTIPTSWKVDHIPMVIVTEAVIG 83
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SD TP GI+ + +A + A + D ++DPGN+G+I+R A G V
Sbjct: 84 ELSDTETPQGIVAVCRHLQWNVADVQTA-----LFIDAVQDPGNVGTIIRTADAAGIDAV 138
Query: 126 VCSRGCVDIYDNKVIRAA 143
V G VDIY+ KVIRA
Sbjct: 139 VVGEGSVDIYNAKVIRAT 156
>gi|325954299|ref|YP_004237959.1| tRNA/rRNA methyltransferase SpoU [Weeksella virosa DSM 16922]
gi|323436917|gb|ADX67381.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
Length = 243
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ S+K R+K ++EG + + + LK+N+ +K ++ + + ++P H +
Sbjct: 13 LGSKKYRQKYNLFVVEGVKNVKEVLKSNITVKELYTTNQN----FDAKGNLPVHYLSPNE 68
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L TP + + E+P P SI P L +V D I DPGN+G+I+R+ G
Sbjct: 69 LKKISFLSTPNECLAVCEIP--PQRSIAPVK-GLTLVLDTINDPGNLGTIIRLADWFGIT 125
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q++CS+ VD+Y+ KVI +
Sbjct: 126 QIICSKESVDVYNPKVIMST 145
>gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
ES-1]
gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
ES-1]
Length = 261
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW-----DILKELPLPEDVPQHRV 59
S ++R + G +L+G +L L K K + ++ +I+ L DVPQ +
Sbjct: 23 SSARERREAGQTLLDGSHLLRAFLDNGGKPKHLLLNEQAQQDAEIVALLDACVDVPQTQF 82
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ S+L TP G++ + ++PA A ++ A ++ ++I+DPGN+GSILR AA
Sbjct: 83 EDALFAQLSELKTPNGLLALIDIPA---AQVEVAHSQFALLLEDIQDPGNLGSILRSAAA 139
Query: 120 VGARQVVCSRGCVDIYDNKVIRA 142
G V S GC D + KV+RA
Sbjct: 140 AGCDAVFMSPGCADAWSPKVLRA 162
>gi|417810310|ref|ZP_12456989.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius
GJ-24]
gi|335349106|gb|EGM50606.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius
GJ-24]
Length = 253
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLK-MVFFSQWDILKELPLPEDVPQHRVDYK 62
+ ++K R+K+ +L+G ++ +ALKAN K++ ++ S+++ L E+ +P++ + +
Sbjct: 17 LNTKKGRKKQNKYILDGLHLVKEALKANKKVEELLITSKFEHLNEIEIPDETKVIMISEE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S+ TP GI GI + I + + ++ D ++DPGN+G+++R A G
Sbjct: 77 VSKSISETQTPQGIFGIVSIEEEKI-TYPQKDIGAWLMLDGVQDPGNIGTMVRTADAAGF 135
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
V+ G D+Y+ KV+RA
Sbjct: 136 SGVILGEGSADLYNPKVVRA 155
>gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101]
gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101]
Length = 257
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 79/146 (54%), Gaps = 13/146 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE------LPLPEDVPQH 57
+K +K R K ++EG R + +A+K+ + + + F++ KE L + E++
Sbjct: 18 LKEKKYRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTES--FKEKNPDLFLKINENIKLI 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+++ ++ P GI+G+ + + S + L ++ D ++DPGNMG+I+R
Sbjct: 76 QMNEALLKQLCSTENPQGIVGVINMQNKELKSGE-----LVVLVDKVQDPGNMGTIIRTA 130
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA +V ++G VDIY++K +R+
Sbjct: 131 HAAGAAGIVMTKGTVDIYNDKTLRST 156
>gi|392423574|ref|YP_006464568.1| rRNA methylase [Desulfosporosinus acidiphilus SJ4]
gi|391353537|gb|AFM39236.1| rRNA methylase [Desulfosporosinus acidiphilus SJ4]
Length = 264
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 6/146 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
++ RK R++ ++EG R + +A+ N LK V+ S W+ L+E L ++P
Sbjct: 16 LQRRKVRDETQLYVIEGWRFVEEAVHRNAPLKKVYVSSKRNPSDWESLREGLLARNIPFE 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
D + ++ P GI+ + + + + + ++ D ++DPGN+G+ILR
Sbjct: 76 ETDDRVLRKMCSTEEPQGILAVVQQIKYTWEDVVLDKGSVFLILDGVQDPGNLGTILRTA 135
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G R + + G VD+Y+ KV+R+
Sbjct: 136 LAAGVRYICLTSGTVDVYNPKVLRST 161
>gi|55980244|ref|YP_143541.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
gi|55771657|dbj|BAD70098.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
Length = 260
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+ +K RK+RE+ G ++EG+R + AL+A L L+ + ++ L +
Sbjct: 14 LAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPEDRALAGGAEVLELS 73
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ + S P ++G+F LP +A + + PL +V + PGN+G+ILR
Sbjct: 74 ERALARVSTRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKPGNLGAILRAADGA 133
Query: 121 GARQVVCSRGCVDIYDNKVIR 141
GA V+ + G VD++ +VIR
Sbjct: 134 GADLVLVAEG-VDLFSPQVIR 153
>gi|121602580|ref|YP_989621.1| RNA methyltransferase [Bartonella bacilliformis KC583]
gi|421761420|ref|ZP_16198222.1| tRNA/rRNA methyltransferase SpoU [Bartonella bacilliformis INS]
gi|120614757|gb|ABM45358.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
gi|411172885|gb|EKS42935.1| tRNA/rRNA methyltransferase SpoU [Bartonella bacilliformis INS]
Length = 274
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ +K+R ++G M EG +++IDAL ++ + FS+ + E+ H
Sbjct: 22 LNKKKKRNQEGLFMAEGLKLVIDALNLGWTIQTLIFSKST--QGNTTIENTAAHILANGG 79
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
R K ++ + P ++GIF+ HPI +I ++ + I D +RDPGN+G+I+
Sbjct: 80 YVIRASQKIMESITHRDNPQTVVGIFKQQWHPIETITESAKDVYIALDRVRDPGNLGTII 139
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA+ V+ D + + +R+
Sbjct: 140 RTADAVGAKGVILIGETTDPFSPETVRST 168
>gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
Length = 253
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLK-MVFFSQWDILKELPLPEDVPQHRVDYK 62
+ ++K R+K+ +L+G ++ +ALKAN K++ ++ S+++ L E+ +P++ + +
Sbjct: 17 LNTKKGRKKQNKYILDGLHLVKEALKANKKVEELLITSKFEHLNEIEIPDETKVIMISEE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S+ TP GI GI + I + + ++ D ++DPGN+G+++R A G
Sbjct: 77 VSKSISETQTPQGIFGIVSIEEEKI-TYPQKDVGAWLMLDGVQDPGNIGTMVRTADAAGF 135
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
V+ G D+Y+ KV+RA
Sbjct: 136 SGVILGEGSADLYNPKVVRA 155
>gi|327404354|ref|YP_004345192.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
gi|327319862|gb|AEA44354.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
Length = 242
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLK-LKMVFFSQWDILKELPLPEDVPQHRVDYK 62
+ +K R+ + ++EG++++++ ++ L L+M+ S+ ++P V K
Sbjct: 15 LHQKKMRDLESIFIVEGEKLVLEGIQMGLSNLEMIITSE-AFFDQIPASLHFKTFTVSTK 73
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ S+L TP + IF+ + + +V D ++DPGNMG++LR+ G
Sbjct: 74 ELEQVSELKTPNKCLAIFKREKYTLLE-----KSFTLVLDGVQDPGNMGTMLRLADWFGV 128
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+QV+CS+ VD Y++KVI+++
Sbjct: 129 KQVICSKDTVDCYNSKVIQSS 149
>gi|386359580|ref|YP_006057825.1| rRNA methylase [Thermus thermophilus JL-18]
gi|383508607|gb|AFH38039.1| rRNA methylase [Thermus thermophilus JL-18]
Length = 260
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+ +K RK+RE+ G ++EG+R + AL+A L L+ + ++ L +
Sbjct: 14 LAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPEDRALAGGAEVLELS 73
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ + S P ++G+F LP +A + + PL +V + PGN+G+ILR
Sbjct: 74 ERALARVSTRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKPGNLGAILRAADGA 133
Query: 121 GARQVVCSRGCVDIYDNKVIR 141
GA V+ + G VD++ +VIR
Sbjct: 134 GADLVLVAEG-VDLFSPQVIR 153
>gi|417788304|ref|ZP_12435987.1| rRNA methylase [Lactobacillus salivarius NIAS840]
gi|334308481|gb|EGL99467.1| rRNA methylase [Lactobacillus salivarius NIAS840]
Length = 253
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLK-MVFFSQWDILKELPLPEDVPQHRVDYK 62
+ ++K R+K+ +L+G ++ +ALKAN K++ ++ S+++ L E+ +P++ + +
Sbjct: 17 LNTKKGRKKQNKYILDGLHLVKEALKANKKVEELLITSKFEHLNEIEIPDETKVIMISEE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S+ TP GI GI + I + + ++ D ++DPGN+G+++R A G
Sbjct: 77 VSKSISETQTPQGIFGIVSIEEEKI-TYPQKDVGAWLMLDGVQDPGNIGTMVRTADAAGF 135
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
V+ G D+Y+ KV+RA
Sbjct: 136 SGVILGEGSADLYNPKVVRA 155
>gi|149371594|ref|ZP_01891010.1| RNA methyltransferase, TrmH family protein [unidentified
eubacterium SCB49]
gi|149355221|gb|EDM43781.1| RNA methyltransferase, TrmH family protein [unidentified
eubacterium SCB49]
Length = 259
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 10/140 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE+ G+ + EG +++ + + L+L F + E+ E H+V
Sbjct: 30 LSKKKYREQHGFFIAEGPKVIDEFIAEGLELHFHFTT------EIVANETHVYHQVTSGE 83
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L P + +F++P A + + +V D ++DPGN+G+I+R+C G
Sbjct: 84 LKKISKLTNPNTSLAVFKIPKKNAA----ITKGVRVVLDGVQDPGNLGTIIRLCDWFGVS 139
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q++CS+ VD ++ KV++A
Sbjct: 140 QLICSKDTVDCFNPKVVQAT 159
>gi|404484416|ref|ZP_11019620.1| hypothetical protein HMPREF9448_00021 [Barnesiella intestinihominis
YIT 11860]
gi|404339421|gb|EJZ65852.1| hypothetical protein HMPREF9448_00021 [Barnesiella intestinihominis
YIT 11860]
Length = 251
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ-HRVDYK 62
+ +K R ++G + EG +++ D L A ++ W + E +P+ VD +
Sbjct: 13 LARKKGRREEGCFIAEGNKLVEDTLSAFECDLLLATPSWIVSHA---HESLPKIQEVDEQ 69
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S LVTPP ++ ++ +P + + +ID L + D ++DPGN+G+I+R+ G
Sbjct: 70 EMSKVSQLVTPPDVLAVYRIPEYHL-NIDTLKKELVLALDTVQDPGNLGTIVRLADWFGI 128
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
R +VCS D+Y+ KV++A
Sbjct: 129 RHIVCSPDTADLYNPKVVQAT 149
>gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
Length = 253
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLK-MVFFSQWDILKELPLPEDVPQHRVDYK 62
+ ++K R+K+ +L+G ++ +ALKAN K++ ++ S+++ L E+ +P++ + +
Sbjct: 17 LNTKKGRKKQNKYILDGLHLVKEALKANKKVEELLITSKFEHLNEIEIPDETKVIMISKE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S+ TP GI GI + I + + ++ D ++DPGN+G+++R A G
Sbjct: 77 VSKSISETQTPQGIFGIVSIEEEKI-TYPQKDVGAWLMLDGVQDPGNIGTMVRTADAAGF 135
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
V+ G D+Y+ KV+RA
Sbjct: 136 SGVILGEGSADLYNPKVVRA 155
>gi|375090461|ref|ZP_09736775.1| hypothetical protein HMPREF9708_01165 [Facklamia languida CCUG
37842]
gi|374565222|gb|EHR36493.1| hypothetical protein HMPREF9708_01165 [Facklamia languida CCUG
37842]
Length = 256
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 82/147 (55%), Gaps = 15/147 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+++ K R K+G ++EG +L +AL ++ V + + D + PL V + +++
Sbjct: 18 LQTAKNRRKQGRYLVEGDHLLEEALSHQALIETVLYVE-DYMG--PLLNQVLERKIEM-- 72
Query: 64 IQLWSDLV-------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
IQ+ D+ TP GI+ + ++ + + S ++CD I+DPGN+G+++R
Sbjct: 73 IQVSRDIFKELAMTETPQGIMAVIKMDTSSMTDLKGQSY---LICDAIQDPGNLGTMIRT 129
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
A G V+ + GCVD+Y++KV+RA+
Sbjct: 130 ADAAGWDGVLLAPGCVDLYNDKVLRAS 156
>gi|384135999|ref|YP_005518713.1| tRNA/rRNA methyltransferase SpoU [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290084|gb|AEJ44194.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 271
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 82/148 (55%), Gaps = 17/148 (11%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH-RVDYK 62
+K+R+ RE+ G ++EG+R++ + L + L+L+ + W++ + P P + +H + D +
Sbjct: 27 LKTRRGRERMGLFLVEGERLVAELLHSPLRLEALL---WNVASDEP-PGPLWRHPKADGR 82
Query: 63 NIQLW-------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
+L +D TP G++ + +P +P P +V D I+DPGN+G+++R
Sbjct: 83 RYELSPQAFAAVADTETPQGVMAVAAIP-----QAEPRYGPRVLVLDAIQDPGNVGTLVR 137
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++V G VD Y KV+RA+
Sbjct: 138 SAEAFGFGEIVFGTGTVDPYAPKVVRAS 165
>gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1]
gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1]
Length = 267
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-------QWDILKELPLPEDVPQ 56
+ R R+K+ L +EG R + +AL + + +++ ++ + IL +L + V
Sbjct: 16 LAQRNFRQKERKLAVEGIRFVEEALSSTWQTEILLYTDQACQAQRGKILLDLARDKGVEV 75
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGSILR 115
V ++ SD TP G++ + P + + I P PL ++ D ++DPGN+G+I+R
Sbjct: 76 LAVSDAIMKELSDTETPQGMLAVLRQPDYTLEDIIRPDQKPLVVIVDGVQDPGNLGTIIR 135
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ +G VDIY+ K +RA
Sbjct: 136 SADAAGASGVILLKGTVDIYNPKTLRAT 163
>gi|381189560|ref|ZP_09897086.1| 23S rRNA methyltransferase [Thermus sp. RL]
gi|384430314|ref|YP_005639674.1| tRNA/rRNA methyltransferase SpoU [Thermus thermophilus
SG0.5JP17-16]
gi|333965782|gb|AEG32547.1| tRNA/rRNA methyltransferase (SpoU) [Thermus thermophilus
SG0.5JP17-16]
gi|380452530|gb|EIA40128.1| 23S rRNA methyltransferase [Thermus sp. RL]
Length = 260
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+ +K RK+RE+ G ++EG+R + AL+A L L+ + ++ L +
Sbjct: 14 LAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPEDRALAGGAEVLELS 73
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ + S P ++G+F LP +A + + PL +V + PGN+G+ILR
Sbjct: 74 ERALARVSTRENPAQVLGVFRLPRRSLAGVALGAAPLVLVLLGLEKPGNLGAILRAADGA 133
Query: 121 GARQVVCSRGCVDIYDNKVIR 141
GA V+ + G VD++ +VIR
Sbjct: 134 GADLVLVAEG-VDLFSPQVIR 153
>gi|73662967|ref|YP_301748.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
gi|72495482|dbj|BAE18803.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
Length = 246
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 9/142 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDY 61
+K +++R+K G ++EG ++ +A K+ +K++ ++ D + + + E+V ++
Sbjct: 18 LKKKRERDKTGLALIEGYHLIEEAYKSKIKIQQLYVVDADRIHDDMISYAEEV--FEINL 75
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
K ++ S VTP G + E PI + A L I C I+DPGN+G+++R A G
Sbjct: 76 KVAEVLSGTVTPQGFFAVIE---KPIYESNNAKQVLLIDC--IQDPGNLGTLIRTADAAG 130
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+V +G D Y +KV+RA+
Sbjct: 131 LDLIVLEKGTADPYQDKVMRAS 152
>gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a04]
gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133C]
gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133A]
gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133B]
gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a01]
gi|424963509|ref|ZP_18377721.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1190]
gi|424972435|ref|ZP_18385774.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1139]
gi|424978996|ref|ZP_18391868.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1123]
gi|425037178|ref|ZP_18441863.1| RNA methyltransferase, TrmH family [Enterococcus faecium 514]
gi|425042262|ref|ZP_18446609.1| RNA methyltransferase, TrmH family [Enterococcus faecium 511]
gi|425048174|ref|ZP_18452096.1| RNA methyltransferase, TrmH family [Enterococcus faecium 509]
gi|431771085|ref|ZP_19559472.1| RNA methyltransferase [Enterococcus faecium E1644]
gi|431772528|ref|ZP_19560866.1| RNA methyltransferase [Enterococcus faecium E2369]
gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a01]
gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133B]
gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133A]
gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133C]
gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a04]
gi|402949014|gb|EJX67107.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1190]
gi|402954240|gb|EJX71878.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1139]
gi|402959659|gb|EJX76897.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1123]
gi|403011992|gb|EJY25265.1| RNA methyltransferase, TrmH family [Enterococcus faecium 514]
gi|403023860|gb|EJY36076.1| RNA methyltransferase, TrmH family [Enterococcus faecium 511]
gi|403031450|gb|EJY43056.1| RNA methyltransferase, TrmH family [Enterococcus faecium 509]
gi|430633865|gb|ELB70015.1| RNA methyltransferase [Enterococcus faecium E1644]
gi|430637607|gb|ELB73606.1| RNA methyltransferase [Enterococcus faecium E2369]
Length = 254
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A +N ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSNAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|46200014|ref|YP_005681.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
gi|46197641|gb|AAS82054.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
Length = 260
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+ +K RK+RE+ G ++EG+R + AL+A L L+ + ++ L +
Sbjct: 14 LAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPEDRALAGGAEVLELS 73
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ + S P ++G+F LP +A + + PL +V + PGN+G+ILR
Sbjct: 74 ERALARVSARENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKPGNLGAILRAADGA 133
Query: 121 GARQVVCSRGCVDIYDNKVIR 141
GA V+ + G VD++ +VIR
Sbjct: 134 GADLVLVAEG-VDLFSPQVIR 153
>gi|163787545|ref|ZP_02181992.1| rRNA methylase [Flavobacteriales bacterium ALC-1]
gi|159877433|gb|EDP71490.1| rRNA methylase [Flavobacteriales bacterium ALC-1]
Length = 245
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R++ G ++EG + + + L ++ +L+ +F ++ ++ E + + + K I
Sbjct: 16 KKNRQELGLFIVEGVKGISEFLNSDFQLEKLFTTK--LIFEASSDQTIEVSETELKKI-- 71
Query: 67 WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
S L P + IF+ P + P ++ L I D IRDPGN+G+I+R+C G + +V
Sbjct: 72 -SSLKNPNTALAIFKTPKPTL----PENVGLIIALDAIRDPGNLGTIIRLCDWYGVKDLV 126
Query: 127 CSRGCVDIYDNKVIRAA 143
CS VD Y++KV++A
Sbjct: 127 CSTNTVDCYNSKVVQAT 143
>gi|363581614|ref|ZP_09314424.1| tRNA/rRNA methyltransferase SpoU [Flavobacteriaceae bacterium HQM9]
Length = 245
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +K R++ G ++EG +++ + L+ + L+ +F + E+ L ++V +++++ +
Sbjct: 13 LKQKKYRKQHGLFVVEGIKVIREFLETHYILQQIFVLE----SEIHLFKEVDRNKLNTVS 68
Query: 64 I---QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ S L TP + +F++ + S L +V D+++DPGN+G+I+R+C
Sbjct: 69 VLELSQLSFLTTPQKAVAVFKISN---GASQYVSSGLQVVLDDVKDPGNLGTIIRLCDWF 125
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G QV+CS VD Y+ KV++A
Sbjct: 126 GVIQVICSVETVDCYNPKVVQAT 148
>gi|410724142|ref|ZP_11363341.1| rRNA methylase [Clostridium sp. Maddingley MBC34-26]
gi|410602428|gb|EKQ56908.1| rRNA methylase [Clostridium sp. Maddingley MBC34-26]
Length = 261
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 24/153 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY-- 61
+K RK R K ++EG R++ +A KA + + + ++ E + Q+ +DY
Sbjct: 18 LKERKNRNKSNKYIIEGFRLVQEAFKAKVHIDYLIITE-------DAKEKIEQYLLDYIV 70
Query: 62 --------KNIQLWSDLVT---PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNM 110
+ L+ +L++ P GI+ + + + A ++CD ++DPGN+
Sbjct: 71 NDDIKIYRMSDNLFKELISTENPQGILAVINMNNMKL----KAYGDFYLLCDKLQDPGNL 126
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+I+R A G + ++ ++G VDIY+ K IR+
Sbjct: 127 GTIIRTAHAAGVQGIILTKGTVDIYNEKTIRST 159
>gi|442805516|ref|YP_007373665.1| tRNA/rRNA methyltransferase SpoU [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741366|gb|AGC69055.1| tRNA/rRNA methyltransferase SpoU [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 292
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-----LPEDVP 55
++ +K +K R K + EG R L +A+ + ++ VFFS +++ L +V
Sbjct: 42 VILLKDKKYRRKLRKFVTEGYRFLHEAVNSGAVIEHVFFSSDTAMEDRNELVERLGPEVR 101
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
+ + ++ ++ TP G++ + +P + +I +V D+I+DPGN G+++R
Sbjct: 102 LYEIPHELFMQMAETDTPQGVLAVVRMPETELKTIFKEGFR-GLVLDSIQDPGNAGTMIR 160
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A+G VV + G VD+Y+ KV+R+
Sbjct: 161 TAHALGFDAVVATEGTVDLYNGKVLRST 188
>gi|392940294|ref|ZP_10305938.1| rRNA methylase [Thermoanaerobacter siderophilus SR4]
gi|392292044|gb|EIW00488.1| rRNA methylase [Thermoanaerobacter siderophilus SR4]
Length = 241
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M +K +K R ++G +EG +++ALK++ +++ + + + ++P + H +
Sbjct: 1 MKKLKDKKGRYEEGLFFVEGTTSVLEALKSDFEIEYIVMGEG-VKIDIPKGDFEIAHTTE 59
Query: 61 --YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+K I SD VTP ++ I ++P + + + ++ DNI+DPGN+G+I+R
Sbjct: 60 RIFKKI---SDTVTPQMVMAIIKIPKYE-ENTYIKEKGVYVIADNIQDPGNLGTIIRTAD 115
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G + CVDI++ KV+RA+
Sbjct: 116 AFGVSAIFTINNCVDIFNPKVLRAS 140
>gi|406671031|ref|ZP_11078274.1| hypothetical protein HMPREF9706_00534 [Facklamia hominis CCUG
36813]
gi|405581336|gb|EKB55366.1| hypothetical protein HMPREF9706_00534 [Facklamia hominis CCUG
36813]
Length = 255
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 82/143 (57%), Gaps = 7/143 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+++ K R++ G ++EG ++ +ALK + ++ + + D + +L L E + + RV
Sbjct: 18 LQTAKGRKQAGAYLIEGPHLIQEALKTSQVMEWLLIRE-DWVDKLGLIEGIDEDRVIQLA 76
Query: 64 IQLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ + L GI+ + ++PA S+ ++CD ++DPGN+G+++R A
Sbjct: 77 KEAFDSLAMTQQSQGIMAVLQIPATCHFSLKGDRY---LLCDGVQDPGNLGTLIRTADAA 133
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G VV ++GCVD+Y++KVIR++
Sbjct: 134 GLSGVVLNQGCVDLYNDKVIRSS 156
>gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
Length = 257
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
K K R ++ ++EG R+ ++ + +K V S ++ KE E P + K
Sbjct: 18 KKSKVRNEEQVFIVEGLRMFMEVPQDQVKKVYVSESLYNKKKEELHLERFPVEVLADKVF 77
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
Q SD TP GI+ + + + I + P IV DN++DPGN+G+I+R G
Sbjct: 78 QHVSDTKTPQGILCVVKQRKYEIEDLISKENPHFIVLDNLQDPGNLGTIVRTAEGAGVTA 137
Query: 125 VVCSRGCVDIYDNKVIRAA 143
V S CVDIY+ K IR+
Sbjct: 138 VFMSNDCVDIYNPKTIRST 156
>gi|451819436|ref|YP_007455637.1| tRNA/rRNA methyltransferase [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451785415|gb|AGF56383.1| tRNA/rRNA methyltransferase [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 261
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 79/145 (54%), Gaps = 9/145 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK-ELPLPEDVPQHRVDYK 62
+K RK R K ++EG R++ +A KA + + + ++ + K + L E + + YK
Sbjct: 18 LKERKNRNKTSKYIIEGFRLVQEAFKAKVHVDYLIVAEDAVNKIDEFLGEYINEEIKIYK 77
Query: 63 -NIQLWSDLVT---PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
L+ +L++ P GI+ + + A + S L +CD ++DPGN+G+I+R
Sbjct: 78 IAANLFKELISTENPQGILAVINMNARILNSDGDFYL----LCDKLQDPGNLGTIIRTAH 133
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G + ++ ++G VDIY+ K IR+
Sbjct: 134 AAGVQGIILTKGTVDIYNEKTIRST 158
>gi|326331232|ref|ZP_08197526.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
Broad-1]
gi|325951002|gb|EGD43048.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
Broad-1]
Length = 262
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLK-----LKMVFFSQWDILKELPLPEDVPQHR 58
+ R R ++G + +G + + AL L ++ +F ++ L D P
Sbjct: 18 LGRRSVRAERGLFLADGPKAVEGALGTVLDSGASCVQEIFATEAGAETYAALLADSPVTL 77
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
VD + + SD VTP G++ + P+A I + PL ++C ++RDPGN G+++R
Sbjct: 78 VDDRAMAGLSDSVTPAGVVALCRFLDVPLADI---AGPLVVICADVRDPGNAGTVIRCAD 134
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ + VD+Y+ K IRA+
Sbjct: 135 AAGASGVILAGDSVDLYNPKTIRAS 159
>gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase SpoU [Halothermothrix orenii H 168]
gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
Length = 270
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 84/147 (57%), Gaps = 8/147 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDAL-KANL-KLKMV-FFSQWDILKEL--PLPEDVPQHR 58
+ ++ R+K+G +LEG R++++A KA ++ M +F++ D +E+ + +P H
Sbjct: 19 LYNKSFRKKEGKFILEGYRLIMEACGKARFDRIFMTPYFAKTDEGEEIIRKFKDHIPVHF 78
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASI--DPASLPLNIVCDNIRDPGNMGSILRV 116
V K + +D P GI I +P A+I + + ++ D I+DPGNMG+I+R
Sbjct: 79 VTGKLLYNVADTENPQGIAAITYVPRSG-ANILFHNRNRGIILILDRIQDPGNMGTIIRT 137
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++C +G VDIY+ KVIRA+
Sbjct: 138 AVAAGIEGIICLKGSVDIYNLKVIRAS 164
>gi|260752268|ref|YP_003225161.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|397675913|ref|YP_006517451.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|258551631|gb|ACV74577.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|395396602|gb|AFN55929.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 268
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY-- 61
++ +K R ++G + EG RIL +A +A +FF+ PL + + + D
Sbjct: 19 LRDKKHRREEGLFLAEGLRILTEAREAGFIPVYIFFAADSAAH--PLVQQLIEAVEDKGG 76
Query: 62 KNIQLWSDLV-------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ I+ D++ P +IG+FE P++SID P+ +V ++RDPGN+G++L
Sbjct: 77 EAIETSRDILHKLSGKDNPQTVIGVFESFTLPLSSIDRRQAPIWLVAQSLRDPGNLGTLL 136
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA ++ CVD + + +RA
Sbjct: 137 RTGDAVGAGGLILIDDCVDPFSVEAVRAT 165
>gi|56552224|ref|YP_163063.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
ZM4]
gi|384410965|ref|YP_005620330.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|56543798|gb|AAV89952.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ZM4]
gi|335931339|gb|AEH61879.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 268
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY-- 61
++ +K R ++G + EG RIL +A +A +FF+ PL + + + D
Sbjct: 19 LRDKKHRREEGLFLAEGLRILTEAREAGFIPVYIFFAADSAAH--PLVQQLIEAVEDNGG 76
Query: 62 KNIQLWSDLV-------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ I+ D++ P +IG+FE P++SID P+ +V ++RDPGN+G++L
Sbjct: 77 EAIETSRDILHKLSGKDNPQTVIGVFESFTLPLSSIDRRQAPIWLVAQSLRDPGNLGTLL 136
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA ++ CVD + + +RA
Sbjct: 137 RTGDAVGAGGLILIDDCVDPFSVEAVRAT 165
>gi|310658445|ref|YP_003936166.1| RNA methyltransferase, TrmH family [[Clostridium] sticklandii]
gi|308825223|emb|CBH21261.1| RNA methyltransferase, TrmH family [[Clostridium] sticklandii]
Length = 261
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 11/149 (7%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M M+S K R+K + EG R + A++ N K + F Q D + E P ++ ++ D
Sbjct: 16 MSLMQS-KYRKKNQMFLAEGLRNVELAIE-NPKTIYLIFIQEDRINE-PRYSNIIKNTGD 72
Query: 61 ------YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
K ++ SD VT GI+ I + I ID + L + D I+DPGN+G+IL
Sbjct: 73 KSFVVPSKLMETISDTVTSQGIVAICNFESFMIDDIDFNNDIL--ILDKIQDPGNLGTIL 130
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G V+C++G DIY +KV+R+A
Sbjct: 131 RTADAAGISTVICTKGTTDIYSSKVVRSA 159
>gi|298706974|emb|CBJ29793.1| tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus]
Length = 354
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP--------- 51
M R+ R+ G ++ EG R++ D ++ L +V S + L+ P P
Sbjct: 77 MRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVIVSP-EALRASPGPRLQAALETL 135
Query: 52 EDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMG 111
+ +Q D VT G++ + E P P+ P +L ++CD I+DPGN+G
Sbjct: 136 SADVVAVAPAEVVQRCCDTVTSQGVVALVERPVLPL----PPTLQTVLICDGIQDPGNLG 191
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+++R A +GA VV + CVD + K +RA+
Sbjct: 192 TLVRTAAGLGADAVVLTGSCVDYWAPKTVRAS 223
>gi|452825810|gb|EME32805.1| RNA methyltransferase, TrmH family [Galdieria sulphuraria]
Length = 316
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ + R+ ++ EG R++ DALK LK + +S D+ K + +
Sbjct: 67 LTDNQYRKTSKKIVCEGLRLVSDALKRGLKPHFILYSD-DVFKSTSFHQYFSKQLFSTSI 125
Query: 58 --RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
+ + I SD VT GI+ +FE P+ ++ L ++CD I+DPGN+GS+LR
Sbjct: 126 AWKTTSEVISSISDTVTCQGIVAVFEQPSDGLSHHSD----LVLICDKIQDPGNLGSLLR 181
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
AAVG V+ S D Y KV+R
Sbjct: 182 SAAAVGVDGVIVSPESTDPYSVKVLRGG 209
>gi|326800581|ref|YP_004318400.1| tRNA/rRNA methyltransferase SpoU [Sphingobacterium sp. 21]
gi|326551345|gb|ADZ79730.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
Length = 252
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-----QWDILKELPLPEDVPQHR 58
+ +K R++ G ++EG + + D ++ + ++++ + DI E + +
Sbjct: 13 LHQKKFRKEHGLFIVEGFKSITDFFHSDYVIHSIYYTPKVGPKIDIFGE-----KIKHYP 67
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ ++++ S L TP GI+ + E P+ D ++V D I+DPGN+G+I+R
Sbjct: 68 ISERDLEAISTLKTPQGIVALIETPSEVAVQEDELRDQFSLVLDTIQDPGNLGTIIRTAD 127
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
G + ++CS V+ ++ KV++A
Sbjct: 128 WFGIKHIICSEETVECFNPKVVQAT 152
>gi|255526051|ref|ZP_05392974.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
gi|255510237|gb|EET86554.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
Length = 260
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 14/143 (9%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVF--------FSQWDILKELPLPEDVPQHRVD 60
R K ++EG R + +ALK+ ++ M+F F +DI +L + + V
Sbjct: 23 HRTKNNQFLIEGFRFVEEALKSEFQVPMIFVSESHKSRFQSFDIKSKLQKSTKI--YWVS 80
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ ++L SD TP GI + + + + + ++ D ++DPGNMG+I+R A
Sbjct: 81 EQVLKLLSDTETPQGITAVVDNKELNVENKEG----FYVLVDKVQDPGNMGTIIRTAHAS 136
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
A V+ ++G VDIY+ K +R+
Sbjct: 137 KALGVIITKGTVDIYNEKTLRST 159
>gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
700633]
gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
700633]
Length = 252
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+++ K R+K M+EG+ ++ +A+++N+ ++ + S+ I + P V +
Sbjct: 18 LQTSKGRKKSEAYMIEGEHLVEEAIQSNISIQRLVVSEDTIQFYEKWTKSYPTMFVSKEV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S T GI+ I L P+ + ++ D ++DPGN+G+I+R A G
Sbjct: 78 FEKLSMTQTNQGILAIVPLEKKPLVEVPQGRY---LLADAVQDPGNLGTIIRTADAAGFD 134
Query: 124 QVVCSRGCVDIYDNKVIRA 142
VV GCVD+Y++KV+R+
Sbjct: 135 AVVLGEGCVDLYNDKVVRS 153
>gi|194334722|ref|YP_002016582.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM
271]
gi|194312540|gb|ACF46935.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM
271]
Length = 265
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKA--NLKLKMVFFSQWDILKELPLPEDVPQ--HRV 59
+ +K RE++G + EG R + + L+ +++ + F D L +P PE + +
Sbjct: 20 LHQKKYREREGCFLAEGLRTVSELLRQMPSVEALVALFVGADQLALIPFPERYREKLFLL 79
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ + ++ + T G+IG+F + + S L + D+++DPGN+G+I+R A
Sbjct: 80 EQEEMRRLAATTTSQGVIGVFRMGSEDRLSRADEGPSLVVALDDVQDPGNVGTIIRTAAW 139
Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
GA V+ RG D Y+ K +R++A
Sbjct: 140 FGAAAVISGRGTADCYNPKSVRSSA 164
>gi|257066829|ref|YP_003153085.1| tRNA/rRNA methyltransferase SpoU [Anaerococcus prevotii DSM 20548]
gi|256798709|gb|ACV29364.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
20548]
Length = 241
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 10/140 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K R+K+G ++E ++++ +A+K+N + +F + + ++P D
Sbjct: 17 LRNKKYRDKEGLFVIESRKLIEEAIKSNADIDFLFLREG-----ISFEGNIPYLVFDENL 71
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S+L +P G + + D S + ++ D+I DPGNMG+I+R A G
Sbjct: 72 FAKLSELKSPDGYAAVI----RKKEACDLKSDRI-LLLDHISDPGNMGTIIRSAEAFGFS 126
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++ ++GCVDIY+ K +RA+
Sbjct: 127 DIILTKGCVDIYNEKCLRAS 146
>gi|385840410|ref|YP_005863734.1| 23S rRNA methyltransferase RumA [Lactobacillus salivarius CECT
5713]
gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
5713]
Length = 253
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLK-MVFFSQWDILKELPLPEDVPQHRVDYK 62
+ ++K R+++ +L+G ++ +ALKAN K++ ++ S+++ L E+ +P++ + +
Sbjct: 17 LNTKKGRKRQNKYILDGLHLVKEALKANKKVEELLITSKFEHLNEIEIPDETKVIMISEE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S+ TP GI GI + I + + ++ D ++DPGN+G+++R A G
Sbjct: 77 VSKSISETQTPQGIFGIVSIEEEKI-TYPQKDVGAWLMLDGVQDPGNIGTMVRTADAAGF 135
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
V+ G D+Y+ KV+RA
Sbjct: 136 SGVILGEGSADLYNPKVVRA 155
>gi|418961335|ref|ZP_13513222.1| 23S rRNA methyltransferase [Lactobacillus salivarius SMXD51]
gi|380345002|gb|EIA33348.1| 23S rRNA methyltransferase [Lactobacillus salivarius SMXD51]
Length = 253
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLK-MVFFSQWDILKELPLPEDVPQHRVDYK 62
+ ++K R+++ +L+G ++ +ALKAN K++ ++ S+++ L E+ +P++ + +
Sbjct: 17 LNTKKGRKRQNKYILDGLHLVKEALKANKKVEELLITSKFEHLNEIEIPDETKVIMISEE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S+ TP GI GI + I + + ++ D ++DPGN+G+++R A G
Sbjct: 77 VSKSISETQTPQGIFGIVSIEEEKI-TYPQKDVGAWLMLDGVQDPGNIGTMVRTADAAGF 135
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
V+ G D+Y+ KV+RA
Sbjct: 136 TGVILGEGSADLYNPKVVRA 155
>gi|405950002|gb|EKC18011.1| RNA methyltransferase-like protein 1 [Crassostrea gigas]
Length = 391
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+V KS EK + +EG++I+ A+KA + K V+ ++ +L++L L E Q+
Sbjct: 89 LVDSKSAAGIEKTQTIFVEGEKIIRQAVKAGIHFKSVYTTEVKLLEKLELGE-AQQYITK 147
Query: 61 YKNIQLW--SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
K ++ W V GII P S LP+ +V D I DP G +LR
Sbjct: 148 VKALKSWVSQKAVESDGIICAVAQKPDPSVSETENRLPVTVVMDRITDPWTAGVLLRTAH 207
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
VG R+ V ++GC +++D++V+ A+
Sbjct: 208 GVGCRRFVTTKGCCNMWDSEVLTAS 232
>gi|335033073|ref|ZP_08526445.1| rRNA methylase [Agrobacterium sp. ATCC 31749]
gi|333795749|gb|EGL67074.1| rRNA methylase [Agrobacterium sp. ATCC 31749]
Length = 286
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE+ G M EG +++IDAL+ +K + +++ K PL E V
Sbjct: 33 LTQKKGREETGTFMAEGLKLVIDALELGWTIKTLVYAK--AAKGKPLVEQAAVKTVASGG 90
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIFE P+ I P I D +RDPGN+GSI+
Sbjct: 91 LVLEVSEKVIASITRRDNPQMVVGIFEQKWKPLKDIRPEKGETYIALDRVRDPGNLGSII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ C D + + +RA
Sbjct: 151 RTADAAGASGVILVGDCTDPFSLETVRA 178
>gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
49175]
gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
49175]
Length = 256
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 12/147 (8%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALK--ANLKLKMVFFSQWDILKELPLPEDVPQHR 58
+V +++ K R+K G +LEG+ ++ +A+K A +KL +V ++ + K L DV
Sbjct: 15 LVKLQTAKGRKKAGMYLLEGEHLVEEAIKERAQIKLIVVTSNRLEDYKNLLAQTDVQVLV 74
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN---IVCDNIRDPGNMGSILR 115
V S T GI+ + E+ I LP IV D ++DPGN+G+I+R
Sbjct: 75 VSQDVFHKLSMTETAQGILAVVEIVKQEI-------LPHKGRFIVLDAVQDPGNLGTIVR 127
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRA 142
A G VV G VD+Y++KV+R+
Sbjct: 128 TADAAGFDAVVLGTGTVDLYNDKVLRS 154
>gi|319892126|ref|YP_004149001.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
gi|317161822|gb|ADV05365.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
Length = 248
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WDILKEL-PLPEDVPQHRVDYKNIQL 66
+R+K+G +LEG ++ +A+++ + + +F + + EL E+V + + K +
Sbjct: 23 ERDKQGLAILEGFHLIEEAVESQIMVTQLFMIEPSRVPTELIEAAEEV--YEITQKVAET 80
Query: 67 WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
S VTP GI I E P +D + ++ D I+DPGN+G+++R A G +V
Sbjct: 81 LSGTVTPQGIFAIIEKP-----QVDVTAAKQVLILDRIQDPGNLGTMIRTADAAGLDLIV 135
Query: 127 CSRGCVDIYDNKVIRAA 143
++G D+Y +KV+RA+
Sbjct: 136 MTKGTADVYQDKVLRAS 152
>gi|418324574|ref|ZP_12935808.1| RNA methyltransferase, TrmH family [Staphylococcus pettenkoferi
VCU012]
gi|365225261|gb|EHM66506.1| RNA methyltransferase, TrmH family [Staphylococcus pettenkoferi
VCU012]
Length = 246
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A+ +++++ +F + + L + ++ K
Sbjct: 18 LKKKRERDKTGHALIEGYHLIEEAMASDIQIVSLFCVEAEREDAAMLDYADAVYEINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+L S VTP GI + + P + P+ + ++ D I+DPGN+G+++R A G
Sbjct: 78 AELLSGTVTPQGIFAVIQQP--KVQDRQPSQV---LLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV +G D Y +KV+RA+
Sbjct: 133 MVVLEKGSADPYQDKVLRAS 152
>gi|334127680|ref|ZP_08501584.1| rRNA methylase [Centipeda periodontii DSM 2778]
gi|333388917|gb|EGK60085.1| rRNA methylase [Centipeda periodontii DSM 2778]
Length = 275
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD-------ILKELPLPEDVPQ 56
+ ++++ K+G ++EG R+ A ++ +++ ++ +L + + VP
Sbjct: 22 VHTQRRAAKEGLFIVEGLRLAEMAAASDWRIRHALVTERAMTGERVRVLIDTLVERSVPV 81
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPI----ASIDPASLPLNIVCDNIRDPGNMGS 112
V S TP GI+ + E + + + A PL I D ++DPGN+G+
Sbjct: 82 ALVTESLFSSVSQTDTPQGILLVMERRKTSLELLHSGVQTAESPLYIALDRVQDPGNVGT 141
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
ILR AVGA V+ RGC D+Y +KV+RA
Sbjct: 142 ILRTSDAVGASGVILLRGCADVYSSKVVRA 171
>gi|336171666|ref|YP_004578804.1| tRNA/rRNA methyltransferase SpoU [Lacinutrix sp. 5H-3-7-4]
gi|334726238|gb|AEH00376.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix sp. 5H-3-7-4]
Length = 240
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 13/141 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WDILKELPLPEDVPQHRVDYK 62
+K +K R +G+ + EG +++ + L + L+L +F ++ + I L ++ +
Sbjct: 13 LKQKKYRVAEGFFVAEGVKVINELLNSTLELHHLFTTETFKINNNETLITQAELKKISF- 71
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
L TP + +F++P ID L + D++RDPGN+G+I+R+C G
Sbjct: 72 -------LTTPNKALAVFKIP--EAVKIDTNGLI--VALDDVRDPGNLGTIIRLCDWYGI 120
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+VCS G VD Y+ KVI+A
Sbjct: 121 TNLVCSIGTVDCYNPKVIQAT 141
>gi|296111277|ref|YP_003621659.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154]
gi|339491451|ref|YP_004705956.1| rRNA methylase [Leuconostoc sp. C2]
gi|295832809|gb|ADG40690.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154]
gi|338853123|gb|AEJ31333.1| rRNA methylase [Leuconostoc sp. C2]
Length = 257
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ ++K R++ +L+G ++ +A+KA+ K V ++ + LP +P VP + +
Sbjct: 18 LATKKGRQENRTYLLDGWHLVEEAIKASAKFHAVMATEEQMATHLPDVPHGVPAFEISDE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + DP + ++ DNI+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPDK---TFDPTYVHDGAWLLLDNIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D Y KV+RA
Sbjct: 135 GFKGVVFGEGTADAYSPKVVRA 156
>gi|255326342|ref|ZP_05367426.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
gi|255296559|gb|EET75892.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
Length = 333
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 27/165 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLK---LKMVF-----FSQWDILKEL------- 48
+++R R KKG ++EG + + +ALKA+LK L V+ F + + + EL
Sbjct: 45 LRTRAARTKKGQFLVEGPQAVREALKAHLKKPILDAVYVTEAAFDRHEDIAELLEQVYGT 104
Query: 49 PLPED---VPQHRVDYKNIQLWSDLVTPPGIIGI-FELPAH-----PIASIDPASLPLNI 99
P PE+ V V + ++ +D V+P GII + F + A +++P L
Sbjct: 105 PTPEEGRRVFMRVVTDEVLEAMADSVSPQGIIAVSFMVDASFSLLWGEGALNP---KLIA 161
Query: 100 VCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
V ++DPGN G+ILRV A GA V+ ++G VD+Y+ K +R+ A
Sbjct: 162 VLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTA 206
>gi|336117363|ref|YP_004572130.1| RNA methyltransferase [Microlunatus phosphovorus NM-1]
gi|334685142|dbj|BAK34727.1| putative RNA methyltransferase [Microlunatus phosphovorus NM-1]
Length = 241
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 17 MLEGKRILIDALKANLKLKMVFFSQWDI-----LKELPLPEDVPQHRVDYKNIQLWSDLV 71
M EG++ + +AL A+ ++ V + + L + +VP K I SD V
Sbjct: 1 MAEGRQAVSEALAADGVVRRVLVGETAVDAHQDLLNIAARANVPVATATAKTIGELSDTV 60
Query: 72 TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGC 131
TP GI+ I P+ A L ++CD IRDPGN+G+++R A GA V+ S
Sbjct: 61 TPQGILAICRTVDVPLEHALIADARLVVLCDQIRDPGNLGTVIRCADAFGADAVLISTES 120
Query: 132 VDIYDNKVIRAA 143
VD+Y+ K +RA+
Sbjct: 121 VDLYNPKTVRAS 132
>gi|429766779|ref|ZP_19299021.1| RNA methyltransferase, TrmH family [Clostridium celatum DSM 1785]
gi|429182925|gb|EKY24001.1| RNA methyltransferase, TrmH family [Clostridium celatum DSM 1785]
Length = 262
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKA--NLKLKMVFFSQWDILKELPLPEDVPQHRVDY 61
+K RK R K+ ++EG R++ +A KA N++ +V + D L + L E + ++
Sbjct: 18 LKERKYRTKENKYIIEGFRLVQEAFKAKCNIEYLIVNENGKDKLNDY-LNEYMDNIKIYE 76
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
+L+ LV GI + + SID ++CD ++DPGN+G+I+R A G
Sbjct: 77 MKNELFIQLVATENTQGIIAV-VNINNSIDDIKGDFYLLCDKVQDPGNLGTIIRTAHAAG 135
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++ ++G VDIY++K IR+
Sbjct: 136 VSGIILTKGTVDIYNDKTIRST 157
>gi|344203360|ref|YP_004788503.1| tRNA/rRNA methyltransferase SpoU [Muricauda ruestringensis DSM
13258]
gi|343955282|gb|AEM71081.1| tRNA/rRNA methyltransferase (SpoU) [Muricauda ruestringensis DSM
13258]
Length = 238
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+V +K +K R + ++EG++++ + L+A + VF ++ + E V
Sbjct: 10 VVSLKQKKYRSQHRLFVVEGEKVVTELLEAGMGPFKVFADDAILMGKFKDAEVVSS---- 65
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
K ++ S L P G++G+F + +D +V D +RDPGN+G+I+R+C
Sbjct: 66 -KVLKQMSSLTHPNGVLGVFYMTESQKDIVDDWV----VVLDAVRDPGNLGTIIRLCDWF 120
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G Q+VCS+ VD Y+ KV++A
Sbjct: 121 GVTQLVCSQDTVDCYNPKVLQAT 143
>gi|339629794|ref|YP_004721437.1| tRNA/rRNA methyltransferase SpoU [Sulfobacillus acidophilus TPY]
gi|379007091|ref|YP_005256542.1| tRNA/rRNA methyltransferase SpoU [Sulfobacillus acidophilus DSM
10332]
gi|339287583|gb|AEJ41694.1| tRNA/rRNA methyltransferase (SpoU) [Sulfobacillus acidophilus TPY]
gi|361053353|gb|AEW04870.1| tRNA/rRNA methyltransferase (SpoU) [Sulfobacillus acidophilus DSM
10332]
Length = 280
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 3 YMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-QW-------DILKELPLPEDV 54
+ S R K ++EG R++ +AL A + +V +S +W +++ L
Sbjct: 20 FATSHHARVKNQRTVVEGGRLIEEALGAGFRPHVVVYSPRWVAKPDGRAMIQRLEAAGAR 79
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASID----PASLPLNIVCDNIRDPGNM 110
P + D + + S L PPG++ + +LP P S+D P +P +V D I+DPGN+
Sbjct: 80 PLYITD-RLLDSLSSLEAPPGVMAVVDLP--PWRSLDEVLDPDPVPWLMVADAIQDPGNL 136
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
G+++R A GAR V + G V+ ++ K IRA+A
Sbjct: 137 GTLVRAALAAGARTVAVTPGTVEPFNPKTIRASA 170
>gi|357057540|ref|ZP_09118399.1| hypothetical protein HMPREF9334_00115 [Selenomonas infelix ATCC
43532]
gi|355375199|gb|EHG22488.1| hypothetical protein HMPREF9334_00115 [Selenomonas infelix ATCC
43532]
Length = 276
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 16/153 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW-------DILKELPLPEDVPQ 56
+ ++++ K+G ++EG RI A ++ K+ ++ +L + L DVP
Sbjct: 22 VHTQRRAAKEGLFIVEGLRIAEMAAASDWKICHALVTEQALRGERGHVLADSLLERDVPV 81
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASL-------PLNIVCDNIRDPGN 109
+ V K + SD +P G++ + E S+D PL I D ++DPGN
Sbjct: 82 YLVTEKLFSMLSDTDSPQGVLLVMERKQR--ISLDEMHAGTYGDEPPLYIALDRVQDPGN 139
Query: 110 MGSILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+G+ILR A+GA V+ G VDIY KV+RA
Sbjct: 140 VGTILRTADAIGATGVILLHGSVDIYSGKVVRA 172
>gi|300173701|ref|YP_003772867.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc
gasicomitatum LMG 18811]
gi|333447603|ref|ZP_08482545.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc inhae
KCTC 3774]
gi|299888080|emb|CBL92048.1| Putative trmH family tRNA/rRNA methyltransferase TRMHL [Leuconostoc
gasicomitatum LMG 18811]
Length = 257
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ ++K R++ +L+G ++ +A+KAN K V ++ + LP +P VP + +
Sbjct: 18 LATKKGRQENRTYLLDGWHLVEEAVKANAKFHAVMATEEQMQTHLPDVPHGVPAFEISEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + DP+ + ++ D I+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPDK---TFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D Y KV+RA
Sbjct: 135 GFKGVVFGEGTADAYSPKVVRA 156
>gi|333978111|ref|YP_004516056.1| TrmH family RNA methyltransferase [Desulfotomaculum kuznetsovii DSM
6115]
gi|333821592|gb|AEG14255.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 297
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 11 EKKGWLMLEGKRILIDALKANLKLKMVFFS-----QWDILKELPLPEDVPQHRVDYKNIQ 65
EK+G +LEG R++ +AL +KM+ ++ + L EL + V+ +
Sbjct: 23 EKEGHFLLEGVRLVEEALYTGWPVKMLVYTPSAGERAGALLELARERGIQILVVEEGLLN 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
+D TP G++ + E P + + I L ++ D ++DPGN+G+++R A GA V
Sbjct: 83 ELADTETPQGVLAVVERPRYTLEEILAPGPSLLLLVDGVQDPGNLGTMIRSADAAGAGGV 142
Query: 126 VCSRGCVDIYDNKVIRA 142
+ G VD+Y+ K IRA
Sbjct: 143 ILFPGTVDLYNPKTIRA 159
>gi|317131314|ref|YP_004090628.1| tRNA/rRNA methyltransferase SpoU [Ethanoligenens harbinense YUAN-3]
gi|315469293|gb|ADU25897.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
YUAN-3]
Length = 263
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 13/148 (8%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
++R R + G +LEG R+L DAL++ ++++ VFF+ K P + R +
Sbjct: 20 ENRAFRRETGRFVLEGARLLGDALESGVRMETVFFTGEACEKH---PALLASARDGGARV 76
Query: 65 QLWSDLVT--------PPGIIGIFELPAHPIASIDPASLPLNIVC-DNIRDPGNMGSILR 115
L D V P G+ + A +D +L +NIRDPGN+G++LR
Sbjct: 77 CLVGDAVAAKLADTAAPQGVFAAAFMLDKAFA-LDKINLGGAYAALENIRDPGNLGAVLR 135
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A+G V+ S GC DIY KV+RA+
Sbjct: 136 TAEALGLSGVLLSAGCADIYAPKVVRAS 163
>gi|379735860|ref|YP_005329366.1| tRNA/rRNA methyltransferase [Blastococcus saxobsidens DD2]
gi|378783667|emb|CCG03335.1| tRNA/rRNA methyltransferase [Blastococcus saxobsidens DD2]
Length = 273
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL--KELPLPEDVPQHRVDY 61
+ R RE G + EG++ +++AL ++ VF ++ + ++L VP V
Sbjct: 27 LTRRAGREAAGLFLAEGRQAVVEALVRPDGVREVFATEAAAVGHRDLLAGTTVPVRLVTE 86
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
K S+ VTP G++ + L P S+ A L + + DPGN G++LR A G
Sbjct: 87 KAAAGLSETVTPQGLVAVCTLRDVPAGSLTAAPPRLAVALAELADPGNAGTVLRTADACG 146
Query: 122 ARQVVCSRGCVDIYDNKVIRAAA 144
A VV G D Y K +R++A
Sbjct: 147 AGAVVFGAGSADPYGGKAVRSSA 169
>gi|390953295|ref|YP_006417053.1| rRNA methylase [Aequorivita sublithincola DSM 14238]
gi|390419281|gb|AFL80038.1| rRNA methylase [Aequorivita sublithincola DSM 14238]
Length = 242
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 10/140 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R++ G+ + EG +++ + L+ N+KL+ W ++ +
Sbjct: 13 LQQKKYRDQTGFFVAEGPKVIAELLRENMKLR------WFFSTDVAQVSTENHFHITEAE 66
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L T + +FE+P P A+ D L + D +RDPGN+G+I+R+C G +
Sbjct: 67 LKKISFLKTANTSLAVFEIP-KPRATKDSG---LIVALDAVRDPGNLGTIIRLCDWFGVQ 122
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q++CS D ++ KV++A
Sbjct: 123 QLLCSEDTADCFNPKVVQAT 142
>gi|298243921|ref|ZP_06967728.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
44963]
gi|297556975|gb|EFH90839.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
44963]
Length = 278
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 84/156 (53%), Gaps = 15/156 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF--------SQWDILKELPLPEDVP 55
+ + + R+K G +LEG +L+ L A + V++ ++ +L E ++
Sbjct: 18 LHTTRGRKKSGQCLLEGPHLLLALLDAGMVPLEVYYQPEVMQRQAETRLLLERVKNAELG 77
Query: 56 QHR---VDYKNIQLWSDLVTPPGIIGIFELPAHPIASID----PASLPLNIVCDNIRDPG 108
+ + V + ++ SD+ T GI+ + +L A A++ PAS P ++ D++ DPG
Sbjct: 78 EQQLFEVSERVMEAISDVQTSQGIVCVMDLAAFEAAAVTRRRAPASRPALLILDDLADPG 137
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
NMG+I+R A +V+ + CVD +++KVIR+AA
Sbjct: 138 NMGTIMRTALAADVERVLLTPNCVDCFNSKVIRSAA 173
>gi|392391867|ref|YP_006428469.1| rRNA methylase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390522945|gb|AFL98675.1| rRNA methylase [Desulfitobacterium dehalogenans ATCC 51507]
Length = 270
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF------SQWDILKELPLPEDV 54
+V + RK RE+ G ++EG R + + + L VF W L + +V
Sbjct: 13 VVNLHKRKFREETGEFLIEGWRFVEEGIYRGAHLTKVFVCPERKSESWPQLAKALKDNEV 72
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI-----DPA-SLPLNIVCDNIRDPG 108
P VD + ++ SD +P GI+ + + P + P +P+ ++ D ++DPG
Sbjct: 73 PIIEVDERVLRKMSDTESPQGILAVVKRPQWTWDDLLGMNHGPGDKIPMLLILDGVQDPG 132
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
N G+ILR A G QV + G VD+Y+ K +R+
Sbjct: 133 NCGTILRTALAAGVTQVCLTEGTVDVYNLKALRST 167
>gi|333396988|ref|ZP_08478801.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc
gelidum KCTC 3527]
gi|406600375|ref|YP_006745721.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc
gelidum JB7]
gi|406371910|gb|AFS40835.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc
gelidum JB7]
Length = 257
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ ++K R++ +L+G ++ +A+KAN K V ++ + LP +P VP + +
Sbjct: 18 LATKKGRQENRTYLLDGWHLVEEAVKANAKFHAVMATEEQMQTHLPDVPHGVPAFEISEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + DP+ + ++ D I+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPDK---TFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D Y KV+RA
Sbjct: 135 GFKGVVFGEGTADAYSPKVVRA 156
>gi|422325404|ref|ZP_16406440.1| hypothetical protein HMPREF0737_01550 [Rothia mucilaginosa M508]
gi|353343408|gb|EHB87726.1| hypothetical protein HMPREF0737_01550 [Rothia mucilaginosa M508]
Length = 333
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 27/165 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLK---LKMVF-----FSQWDILKEL------- 48
+++R R KKG ++EG + + +ALKA+LK L V+ F + + + EL
Sbjct: 45 LRTRAARTKKGQFLVEGPQAVREALKAHLKKPILDAVYVTEAAFDRHEDIAELLEQVYGT 104
Query: 49 PLPED---VPQHRVDYKNIQLWSDLVTPPGIIGI-FELPAH-----PIASIDPASLPLNI 99
P PE+ V V + ++ +D V+P GII + F + A +++P L
Sbjct: 105 PTPEEGRRVFMRVVTDEVLEAMADSVSPQGIIAVSFMVDASFSLLWGEGALNP---KLIA 161
Query: 100 VCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
V ++DPGN G+ILRV A GA V+ ++G VD+Y+ K +R+ A
Sbjct: 162 VLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTA 206
>gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
Alaska E43]
gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
Alaska E43]
Length = 262
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDY 61
+K RK R K ++EG R++ +A+KANL + + ++ ++ L + + +H+V
Sbjct: 18 LKDRKNRNKINKYVIEGFRLVDEAIKANLDIDYLILTEIGYEKLDNYIDKDKIKKHKVYC 77
Query: 62 KNIQLWSDLVT---PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
L+ +L + P GII I ++ + + CD ++DPGN+G+I+R
Sbjct: 78 ITDTLFKELASTENPQGIIAIVKMNNKKL----DFQGDFYLFCDKVQDPGNLGTIIRTAH 133
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V S+G VDIY+ K IR+
Sbjct: 134 AAGVNGIVLSKGTVDIYNEKTIRST 158
>gi|430827851|ref|ZP_19445982.1| RNA methyltransferase [Enterococcus faecium E0269]
gi|431108362|ref|ZP_19497513.1| RNA methyltransferase [Enterococcus faecium E1613]
gi|430484197|gb|ELA61227.1| RNA methyltransferase [Enterococcus faecium E0269]
gi|430569486|gb|ELB08490.1| RNA methyltransferase [Enterococcus faecium E1613]
Length = 254
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A +++++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDVEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSKDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|430825755|ref|ZP_19443956.1| RNA methyltransferase [Enterococcus faecium E0164]
gi|430445819|gb|ELA55536.1| RNA methyltransferase [Enterococcus faecium E0164]
Length = 254
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPEFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|407473375|ref|YP_006787775.1| tRNA/rRNA methyltransferase SpoU [Clostridium acidurici 9a]
gi|407049883|gb|AFS77928.1| tRNA/rRNA methyltransferase SpoU [Clostridium acidurici 9a]
Length = 271
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW--------DILKELPLPEDVP 55
+ +++R K +EG R + ++ A +++ + +S+ D+L+E+
Sbjct: 21 LHKKRERWNKKSFFIEGIRAVEQSILAKAEIEYIVYSEKLFTNNGGKDLLEEVKKRNYKT 80
Query: 56 QHRVD--YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
H D +K+I D P GI+ + + + I + IV D ++DPGNMG+I
Sbjct: 81 YHISDKLFKDI---GDTEQPQGILAVVRFKEYELEDILLSESNFLIVLDRVQDPGNMGTI 137
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+R A GA ++ + GCVDIY+ K IR+
Sbjct: 138 IRTADAFGANGIIVTSGCVDIYNPKTIRST 167
>gi|402570741|ref|YP_006620084.1| rRNA methylase [Desulfosporosinus meridiei DSM 13257]
gi|402251938|gb|AFQ42213.1| rRNA methylase [Desulfosporosinus meridiei DSM 13257]
Length = 264
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS------QWDILKELPLPEDVPQH 57
++ RK RE+ ++EG R + + ++ N L V+ +W ++ + +P
Sbjct: 16 LQRRKAREESKAYVIEGWRFVEEGVRRNAPLIKVYVCLDCEGLEWRYIRTKLVERGIPYE 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
VD + ++ S P GI+ + A+ + + S + +V D I+DPGN+G+ILR
Sbjct: 76 EVDPRVLRKMSATEEPQGILALVRQTAYSWSDLHIDSKTVVLVVDGIQDPGNLGTILRTA 135
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G V + G VD+Y+ KV+R+
Sbjct: 136 LAAGVSNVCLTPGTVDLYNPKVLRST 161
>gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
16795]
gi|164603429|gb|EDQ96894.1| putative RNA methyltransferase, TrmH family, group 3 [Clostridium
bartlettii DSM 16795]
Length = 265
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 16/154 (10%)
Query: 3 YMKS---RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV 59
Y KS K R K+ ++EG RIL AL+ + KL+ VF ++ D E V +
Sbjct: 15 YTKSLLKTKGRNKEKKFIIEGYRILTLALECDAKLEYVFINE-DF--EKKQDHKVLLEEL 71
Query: 60 DYKNIQLWS----------DLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGN 109
+ KNI+++ D GI+ + + + ++ D I+DPGN
Sbjct: 72 ENKNIKIYKTSNKIFSEMVDTENTQGILAVLRYKERDLVNNINQDDKFVLILDRIQDPGN 131
Query: 110 MGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
MG+I+R + G ++ +GCVDIY+ KVIR+
Sbjct: 132 MGTIIRTADSAGVDAIILLKGCVDIYNPKVIRST 165
>gi|418296837|ref|ZP_12908680.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens CCNWGS0286]
gi|355539012|gb|EHH08254.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens CCNWGS0286]
Length = 285
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE+ G M EG +++IDAL+ +K + +++ K PL E V
Sbjct: 32 LTQKKGREETGTFMAEGLKLVIDALELGWTIKTLVYAK--AAKGKPLVEQAAVKTVATGG 89
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIFE P+ I P I D +RDPGN+G+I+
Sbjct: 90 LVLEVSEKVIASITRRDNPQMVVGIFEQKWKPLKDIRPEKGETYIALDRVRDPGNLGTII 149
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ C D + + +RA
Sbjct: 150 RTADAAGASGVILVGDCTDPFSLETVRA 177
>gi|430851941|ref|ZP_19469676.1| RNA methyltransferase [Enterococcus faecium E1258]
gi|430542523|gb|ELA82631.1| RNA methyltransferase [Enterococcus faecium E1258]
Length = 254
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
gi|406591097|ref|ZP_11065404.1| RNA methyltransferase [Enterococcus sp. GMD1E]
gi|410936861|ref|ZP_11368724.1| RNA methyltransferase [Enterococcus sp. GMD5E]
gi|415893540|ref|ZP_11550185.1| Uncharacterized tRNA/rRNA methyltransferase ysgA [Enterococcus
faecium E4453]
gi|431746482|ref|ZP_19535308.1| RNA methyltransferase [Enterococcus faecium E2134]
gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
gi|364092686|gb|EHM35033.1| Uncharacterized tRNA/rRNA methyltransferase ysgA [Enterococcus
faecium E4453]
gi|404468263|gb|EKA13266.1| RNA methyltransferase [Enterococcus sp. GMD1E]
gi|410734891|gb|EKQ76809.1| RNA methyltransferase [Enterococcus sp. GMD5E]
gi|430608716|gb|ELB45955.1| RNA methyltransferase [Enterococcus faecium E2134]
Length = 254
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|430841708|ref|ZP_19459626.1| RNA methyltransferase [Enterococcus faecium E1007]
gi|430493766|gb|ELA70050.1| RNA methyltransferase [Enterococcus faecium E1007]
Length = 254
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|408787209|ref|ZP_11198940.1| tRNA/rRNA methyltransferase SpoU [Rhizobium lupini HPC(L)]
gi|408486840|gb|EKJ95163.1| tRNA/rRNA methyltransferase SpoU [Rhizobium lupini HPC(L)]
Length = 285
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE+ G M EG +++IDAL+ +K + +++ K PL E V
Sbjct: 32 LTQKKGREETGTFMAEGLKLVIDALELGWTIKTLVYAK--AAKGKPLVEQAAVKTVASGG 89
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIFE P+ I P I D +RDPGN+G+I+
Sbjct: 90 LVLEVSEKVIASITRRDNPQMVVGIFEQKWKPLKDIRPEKGETYIALDRVRDPGNLGTII 149
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ C D + + +RA
Sbjct: 150 RTADAAGASGVILVGDCTDPFSLETVRA 177
>gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6]
gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF]
gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6]
gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF]
Length = 254
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
gi|416135642|ref|ZP_11598539.1| Putative tRNA/rRNA methyltransferase [Enterococcus faecium E4452]
gi|424797252|ref|ZP_18222865.1| RNA methyltransferase, TrmH family [Enterococcus faecium S447]
gi|424858042|ref|ZP_18282096.1| RNA methyltransferase, TrmH family [Enterococcus faecium R499]
gi|424958254|ref|ZP_18372910.1| RNA methyltransferase, TrmH family [Enterococcus faecium R446]
gi|424961449|ref|ZP_18375892.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1986]
gi|424967876|ref|ZP_18381551.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1140]
gi|424995372|ref|ZP_18407255.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV168]
gi|424999412|ref|ZP_18411029.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV165]
gi|425001750|ref|ZP_18413238.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV161]
gi|425004443|ref|ZP_18415751.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV102]
gi|425011101|ref|ZP_18422018.1| RNA methyltransferase, TrmH family [Enterococcus faecium E422]
gi|425017206|ref|ZP_18427728.1| RNA methyltransferase, TrmH family [Enterococcus faecium C621]
gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
gi|364092114|gb|EHM34515.1| Putative tRNA/rRNA methyltransferase [Enterococcus faecium E4452]
gi|402921489|gb|EJX41933.1| RNA methyltransferase, TrmH family [Enterococcus faecium S447]
gi|402927428|gb|EJX47394.1| RNA methyltransferase, TrmH family [Enterococcus faecium R499]
gi|402941053|gb|EJX59812.1| RNA methyltransferase, TrmH family [Enterococcus faecium R446]
gi|402943686|gb|EJX62155.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1986]
gi|402953514|gb|EJX71228.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1140]
gi|402977476|gb|EJX93290.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV168]
gi|402978872|gb|EJX94582.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV165]
gi|402985447|gb|EJY00654.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV161]
gi|402989283|gb|EJY04218.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV102]
gi|402997956|gb|EJY12246.1| RNA methyltransferase, TrmH family [Enterococcus faecium E422]
gi|403004898|gb|EJY18657.1| RNA methyltransferase, TrmH family [Enterococcus faecium C621]
Length = 254
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|424909275|ref|ZP_18332652.1| rRNA methylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392845306|gb|EJA97828.1| rRNA methylase [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 285
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE+ G M EG +++IDAL+ +K + +++ K PL E V
Sbjct: 32 LTQKKGREETGTFMAEGLKLVIDALELGWTIKTLVYAK--AAKGKPLVEQAAVKTVASGG 89
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIFE P+ I P I D +RDPGN+G+I+
Sbjct: 90 LVLEVSEKVIASITRRDNPQMVVGIFEQKWKPLKDIRPEKGETYIALDRVRDPGNLGTII 149
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ C D + + +RA
Sbjct: 150 RTADAAGASGVILVGDCTDPFSLETVRA 177
>gi|424951414|ref|ZP_18366512.1| RNA methyltransferase, TrmH family [Enterococcus faecium R496]
gi|424975284|ref|ZP_18388456.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1137]
gi|424982558|ref|ZP_18395207.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV99]
gi|425022009|ref|ZP_18432222.1| RNA methyltransferase, TrmH family [Enterococcus faecium C497]
gi|425026905|ref|ZP_18434975.1| RNA methyltransferase, TrmH family [Enterococcus faecium C1904]
gi|425046160|ref|ZP_18450200.1| RNA methyltransferase, TrmH family [Enterococcus faecium 510]
gi|425053490|ref|ZP_18457032.1| RNA methyltransferase, TrmH family [Enterococcus faecium 506]
gi|425059004|ref|ZP_18462356.1| RNA methyltransferase, TrmH family [Enterococcus faecium 504]
gi|427396436|ref|ZP_18889195.1| hypothetical protein HMPREF9307_01371 [Enterococcus durans
FB129-CNAB-4]
gi|430835566|ref|ZP_19453555.1| RNA methyltransferase [Enterococcus faecium E0680]
gi|430855160|ref|ZP_19472870.1| RNA methyltransferase [Enterococcus faecium E1392]
gi|430857875|ref|ZP_19475508.1| RNA methyltransferase [Enterococcus faecium E1552]
gi|431147907|ref|ZP_19499273.1| RNA methyltransferase [Enterococcus faecium E1620]
gi|431252064|ref|ZP_19504122.1| RNA methyltransferase [Enterococcus faecium E1623]
gi|431374439|ref|ZP_19510127.1| RNA methyltransferase [Enterococcus faecium E1627]
gi|431513932|ref|ZP_19515980.1| RNA methyltransferase [Enterococcus faecium E1634]
gi|431547501|ref|ZP_19519068.1| RNA methyltransferase [Enterococcus faecium E1731]
gi|431710426|ref|ZP_19525238.1| RNA methyltransferase [Enterococcus faecium E1904]
gi|431742852|ref|ZP_19531736.1| RNA methyltransferase [Enterococcus faecium E2071]
gi|431755095|ref|ZP_19543751.1| RNA methyltransferase [Enterococcus faecium E2883]
gi|431769221|ref|ZP_19557645.1| RNA methyltransferase [Enterococcus faecium E1321]
gi|431781649|ref|ZP_19569793.1| RNA methyltransferase [Enterococcus faecium E6012]
gi|431785969|ref|ZP_19573989.1| RNA methyltransferase [Enterococcus faecium E6045]
gi|447912326|ref|YP_007393738.1| rRNA methylase [Enterococcus faecium NRRL B-2354]
gi|402930113|gb|EJX49806.1| RNA methyltransferase, TrmH family [Enterococcus faecium R496]
gi|402954183|gb|EJX71826.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1137]
gi|402960556|gb|EJX77687.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV99]
gi|403004639|gb|EJY18427.1| RNA methyltransferase, TrmH family [Enterococcus faecium C497]
gi|403005347|gb|EJY19066.1| RNA methyltransferase, TrmH family [Enterococcus faecium C1904]
gi|403025064|gb|EJY37171.1| RNA methyltransferase, TrmH family [Enterococcus faecium 510]
gi|403030274|gb|EJY41971.1| RNA methyltransferase, TrmH family [Enterococcus faecium 506]
gi|403036723|gb|EJY48064.1| RNA methyltransferase, TrmH family [Enterococcus faecium 504]
gi|425723106|gb|EKU85997.1| hypothetical protein HMPREF9307_01371 [Enterococcus durans
FB129-CNAB-4]
gi|430489257|gb|ELA65881.1| RNA methyltransferase [Enterococcus faecium E0680]
gi|430547085|gb|ELA87027.1| RNA methyltransferase [Enterococcus faecium E1552]
gi|430547446|gb|ELA87378.1| RNA methyltransferase [Enterococcus faecium E1392]
gi|430575559|gb|ELB14270.1| RNA methyltransferase [Enterococcus faecium E1620]
gi|430578490|gb|ELB17042.1| RNA methyltransferase [Enterococcus faecium E1623]
gi|430583063|gb|ELB21452.1| RNA methyltransferase [Enterococcus faecium E1627]
gi|430586188|gb|ELB24449.1| RNA methyltransferase [Enterococcus faecium E1634]
gi|430591170|gb|ELB29209.1| RNA methyltransferase [Enterococcus faecium E1731]
gi|430596349|gb|ELB34184.1| RNA methyltransferase [Enterococcus faecium E1904]
gi|430607821|gb|ELB45122.1| RNA methyltransferase [Enterococcus faecium E2071]
gi|430617664|gb|ELB54530.1| RNA methyltransferase [Enterococcus faecium E2883]
gi|430627759|gb|ELB64233.1| RNA methyltransferase [Enterococcus faecium E1321]
gi|430646584|gb|ELB82059.1| RNA methyltransferase [Enterococcus faecium E6045]
gi|430648867|gb|ELB84256.1| RNA methyltransferase [Enterococcus faecium E6012]
gi|445188035|gb|AGE29677.1| rRNA methylase [Enterococcus faecium NRRL B-2354]
Length = 254
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|430843778|ref|ZP_19461677.1| RNA methyltransferase [Enterococcus faecium E1050]
gi|430497637|gb|ELA73674.1| RNA methyltransferase [Enterococcus faecium E1050]
Length = 254
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|417858722|ref|ZP_12503779.1| rRNA methylase [Agrobacterium tumefaciens F2]
gi|338824726|gb|EGP58693.1| rRNA methylase [Agrobacterium tumefaciens F2]
Length = 286
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE+ G M EG +++IDAL+ +K + +++ K PL E V
Sbjct: 33 LTQKKGREETGTFMAEGLKLVIDALELGWTIKTLVYAK--AAKGKPLVEQAAVKTVASGG 90
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIFE P+ I P I D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIASITRRDNPQMVVGIFEQKWKPLKDIRPEKGETYIALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ C D + + +RA
Sbjct: 151 RTADAAGASGVILVGDCTDPFSLETVRA 178
>gi|159184265|ref|NP_353372.2| rRNA methylase [Agrobacterium fabrum str. C58]
gi|159139592|gb|AAK86157.2| rRNA methylase [Agrobacterium fabrum str. C58]
Length = 286
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE+ G M EG +++IDAL+ +K + +++ K PL E V
Sbjct: 33 LTQKKGREETGTFMAEGLKLVIDALELGWTIKTLVYAK--AAKGKPLVEQAAVKTVASGG 90
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIFE P+ I P I D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIASITRRDNPQMVVGIFEQKWKPLKDIRPEKGETYIALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ C D + + +RA
Sbjct: 151 RTADAAGASGVILVGDCTDPFSLETVRA 178
>gi|385799727|ref|YP_005836131.1| tRNA/rRNA methyltransferase SpoU [Halanaerobium praevalens DSM
2228]
gi|309389091|gb|ADO76971.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium praevalens DSM
2228]
Length = 269
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFS--------QWDILKELPLPEDVPQHRV 59
+ R K+G +LEGKR++ AL K VF + +L L L D+ +
Sbjct: 22 RNRRKEGVFILEGKRLIEAALAGGADFKQVFLTPAFFKSAANEKLLAALKLEADLI--YL 79
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ K ++ + V P GI+ + E + + ++ D I+DPGNMG+I+R A
Sbjct: 80 EEKLLKETASTVNPQGILAVVEESVFKGQDFYNKADKI-LLLDRIQDPGNMGTIIRTAVA 138
Query: 120 VGARQVVCSRGCVDIYDNKVIRA 142
G ++ +G VDIY+ KVIR+
Sbjct: 139 AGFDGIIALKGSVDIYNQKVIRS 161
>gi|306842563|ref|ZP_07475214.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
gi|306287419|gb|EFM58899.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
Length = 297
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K E V
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKTVEQVAARTFAKGGLVL 104
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K I + P + G+FE H +AS+ P + I D +RDPGN+G+I+R
Sbjct: 105 EVTEKVISAITRRDNPQMVAGVFEQQYHQLASLKPKGNDVYIALDRVRDPGNLGTIIRTA 164
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D Y + +RA
Sbjct: 165 DAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|333395919|ref|ZP_08477736.1| putative tRNA/rRNA methyltransferase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
Length = 251
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE++ +LEG ++ +AL A ++ M+ ++ D LP DVP + + +
Sbjct: 18 LTRKKNREEQQRYLLEGVHLVREALNAQQQITMILATE-DFQAAAWLPNDVPTYWLKPEV 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S VT GI + LP + S ++ D ++DPGN+G+++R A G
Sbjct: 77 AHTLSATVTTQGIFAVLPLPEAKLPQTFTGSW---LLLDGVQDPGNIGTMVRTADAAGLT 133
Query: 124 QVVCSRGCVDIYDNKVIRA 142
VV G D++ KV+R+
Sbjct: 134 GVVLGEGSADLFSAKVLRS 152
>gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter italicus Ab9]
gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
Ab9]
gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
Length = 254
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD--YKNIQLW 67
R ++G +EG +++ALK+N +++ + + + ++P H + +K I
Sbjct: 23 RYEEGLFFVEGTTSVLEALKSNFEIEYIVMGEG-VKIDIPTGNFKIVHTTERVFKKI--- 78
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP ++ I ++P + + I+ DNI+DPGN+G+I+R A GA +
Sbjct: 79 SDTVTPQMVMAIIKIPKYE-EDTYIKDKGIYIIADNIQDPGNLGTIIRTADAFGASAIFT 137
Query: 128 SRGCVDIYDNKVIRAA 143
CVD+++ KV+RA+
Sbjct: 138 INNCVDVFNPKVLRAS 153
>gi|352517858|ref|YP_004887175.1| putative RNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
gi|348601965|dbj|BAK95011.1| putative RNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
Length = 252
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-VPQHRVDY- 61
++ RK R + +LEG ++ +A+KA +++K V+ + + L L +D V QH +DY
Sbjct: 18 LQQRKYRNQSETYLLEGYHLVEEAVKAGVEIKEVYLDE----RGLQLWQDWVKQHELDYY 73
Query: 62 ----KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+ + S+L TP G+I + + + A L L DN++DPGN+G+I+R
Sbjct: 74 LLSNEAMNALSELPTPQGMIALVKKEENIPADFSGKWLLL----DNVQDPGNVGTIVRTA 129
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A G + +G D Y KV+R+
Sbjct: 130 DAAGFDGIFLGKGTADRYSGKVLRS 154
>gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
gi|431230091|ref|ZP_19502294.1| RNA methyltransferase [Enterococcus faecium E1622]
gi|431764406|ref|ZP_19552947.1| RNA methyltransferase [Enterococcus faecium E4215]
gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
gi|430574077|gb|ELB12855.1| RNA methyltransferase [Enterococcus faecium E1622]
gi|430631057|gb|ELB67388.1| RNA methyltransferase [Enterococcus faecium E4215]
Length = 254
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|430947038|ref|ZP_19485818.1| RNA methyltransferase [Enterococcus faecium E1576]
gi|430558435|gb|ELA97854.1| RNA methyltransferase [Enterococcus faecium E1576]
Length = 254
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|430877571|ref|ZP_19483940.1| RNA methyltransferase [Enterococcus faecium E1575]
gi|430557324|gb|ELA96790.1| RNA methyltransferase [Enterococcus faecium E1575]
Length = 254
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|339631700|ref|YP_004723342.1| 23S rRNA methyltransferase [Mycobacterium africanum GM041182]
gi|339331056|emb|CCC26728.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium africanum
GM041182]
Length = 260
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDYKNIQLW 67
R + G + EG ++ AL L ++ VF ++ + L + H V + +
Sbjct: 21 RRRAGRFLAEGPNLVAAALARGL-VREVFVTEVAARRHELLLAAHEASVHLVTERAAKAL 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + +LPA + + S L V IR+PGN G+++R+ A+GA V+
Sbjct: 80 SDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAAVIL 139
Query: 128 SRGCVDIYDNKVIRAA 143
+R VD Y+ K +RA+
Sbjct: 140 ARRSVDPYNGKCLRAS 155
>gi|452995733|emb|CCQ92602.1| RNA methyltransferase, TrmH family, group 3 [Clostridium ultunense
Esp]
Length = 265
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI-- 64
+K+R K ++EG +I+ + + N L + FS L+ + E + Q Y +
Sbjct: 21 KKERWAKKSFLVEGIKIVEECIDNNYPLSNIIFSHE--LRSISGGEGLWQKIRTYDQLIK 78
Query: 65 ---QLW---SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+L+ SD+ P G++ I + I I P ++ D ++DPGNMG+I+R
Sbjct: 79 VPDRLYREISDMENPQGVMAIAIFKQNSIEEIYDKGNPFLLLLDQVQDPGNMGTIIRTAD 138
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++ + GCVDIY+ KV+R+
Sbjct: 139 AFGIDGIIVTEGCVDIYNPKVVRST 163
>gi|283458458|ref|YP_003363084.1| rRNA methylase [Rothia mucilaginosa DY-18]
gi|283134499|dbj|BAI65264.1| rRNA methylase [Rothia mucilaginosa DY-18]
Length = 344
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 21/162 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLK---LKMVF-----FSQWDILKEL------- 48
+++R R KKG ++EG + + +ALKA+L+ L V+ F + + + EL
Sbjct: 56 LRTRAARTKKGQFLVEGPQAVREALKAHLQKPILDAVYVTEAAFDRHEDIAELLEQVYGT 115
Query: 49 PLPED---VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI--DPASLP-LNIVCD 102
P PE+ V V + ++ +D V+P GII + + + + D A P L V
Sbjct: 116 PTPEEGRRVFMRVVTDEVLEAMADSVSPQGIIAVSFMVDASFSLLWGDGALNPKLIAVLS 175
Query: 103 NIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
++DPGN G+ILRV A GA V+ ++G VD+Y+ K +R+ A
Sbjct: 176 RVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTA 217
>gi|227501361|ref|ZP_03931410.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
gi|227216460|gb|EEI81870.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
Length = 246
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 10/140 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K R+K+ ++E K+++ +A+K++L ++ +F + L L + P D
Sbjct: 17 LRNKKYRDKEDLFVIESKKLVEEAIKSSLDIEFIFIREG-----LDLACNFPLVVFDESL 71
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S+L +P G + S + ++ D+I DPGNMG+++R A G
Sbjct: 72 FNKLSELKSPDGFGAVVRKKKEEEISSNRV-----LLLDHINDPGNMGTMIRSAEAFGFN 126
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++ + GCVDIY+ K +RA+
Sbjct: 127 DIILTEGCVDIYNEKSLRAS 146
>gi|269837199|ref|YP_003319427.1| tRNA/rRNA methyltransferase SpoU [Sphaerobacter thermophilus DSM
20745]
gi|269786462|gb|ACZ38605.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
20745]
Length = 293
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF---SQWDILKELPLPEDVPQHRV- 59
++ RK R + ++EG R+L DAL A ++F + L EL RV
Sbjct: 28 LQRRKARYTERAFLVEGVRLLTDALDAGAVPSVLFIDAEKEHSALTELATAAHARGARVI 87
Query: 60 --DYKNIQLWSDLVTPPGIIGIFELPA-HPIASIDP-ASLPLNIVCDNIRDPGNMGSILR 115
++ +D TP G++GI P I A+ PL ++ D IRDPGN+G++LR
Sbjct: 88 PVTSALLRSIADTETPQGVVGIVPFPELGERGDIGAGATAPLFLIADGIRDPGNLGTLLR 147
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRA 142
GA V + G D + KV+RA
Sbjct: 148 AALGAGAHGVYVTAGTTDPFAPKVVRA 174
>gi|325288439|ref|YP_004264620.1| tRNA/rRNA methyltransferase SpoU [Syntrophobotulus glycolicus DSM
8271]
gi|324963840|gb|ADY54619.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
8271]
Length = 273
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF-----SQWD--ILKELPLPED 53
+V + K R+ EG+R + +AL + +++ +F+ S W+ L+EL L
Sbjct: 13 IVSLHQTKGRKTSQQFFAEGRRFVGEALMRSKRIEKIFYCPAKGSTWEREKLEELILEAG 72
Query: 54 ---VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNM 110
+P V ++ S P GI+ + + I + ++ D IRDPGN+
Sbjct: 73 KLRIPAEEVSEDVMKRISATEEPQGILALINQEEYSWDDIQIEPDTILLILDGIRDPGNL 132
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+ILR A G + VV +RG VD Y+ KV+R++
Sbjct: 133 GTILRASLAAGVKNVVLTRGTVDYYNPKVLRSS 165
>gi|89889339|ref|ZP_01200850.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7]
gi|89517612|gb|EAS20268.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7]
Length = 242
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 77/140 (55%), Gaps = 9/140 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R+ ++EG + +++ + +L + V ++ + LP D+ + D N
Sbjct: 13 LSRKKNRDDHQLFLVEGYKSILELSQTDLVRQQVLVTEGHHALD-SLPTDIISKK-DMAN 70
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
I S L TPPG + +FE+P ++ L + D+++DPGN+G+I+R+C +
Sbjct: 71 I---STLKTPPGYLAVFEMPLKREINLSG----LTVALDDVKDPGNLGTIIRLCDWFDVK 123
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q++CS VD+++ K ++A+
Sbjct: 124 QIICSTETVDVFNPKCVQAS 143
>gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
Length = 249
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED---VPQHRVDYK 62
++K+R+K G + EG + +ALK ++++ ELP+ D +P V +
Sbjct: 20 AKKERDKTGMFLAEGYHLAEEALKGEKAIELIISEN----AELPVRWDYGELPVTMVTDE 75
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
I+ SD TP G+I + + P AS+ ++ ++ D ++DPGN+G+++R A G
Sbjct: 76 IIKSLSDTETPQGVIAVCKEEKTP-ASVKGSTF---LLIDAVQDPGNLGTMIRTADAAGI 131
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
V+ +G DIY+ KV+R+A
Sbjct: 132 DAVIVGKGSADIYNPKVLRSA 152
>gi|170016763|ref|YP_001727682.1| rRNA methylase [Leuconostoc citreum KM20]
gi|414596525|ref|ZP_11446099.1| TrmH family RNA methyltransferase [Leuconostoc citreum LBAE E16]
gi|421879127|ref|ZP_16310600.1| TrmH family RNA methyltransferase [Leuconostoc citreum LBAE C11]
gi|169803620|gb|ACA82238.1| rRNA methylase [Leuconostoc citreum KM20]
gi|390446926|emb|CCF26720.1| TrmH family RNA methyltransferase [Leuconostoc citreum LBAE C11]
gi|390482546|emb|CCF28160.1| TrmH family RNA methyltransferase [Leuconostoc citreum LBAE E16]
Length = 257
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL-PLPEDVPQHRVDYK 62
+ ++K R++ +L+G ++ +A+KA K V ++ + + L +P VP V +
Sbjct: 18 LATKKGRQENRTYLLDGWHLVEEAIKAKAKFHAVMATEAQMAEHLNDVPHGVPAFEVSEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + DP + + DNI+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPDK---TFDPTYVHDGAWLFLDNIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G R VV G D Y KV+RA
Sbjct: 135 GFRGVVLGTGTADAYSPKVVRA 156
>gi|421876406|ref|ZP_16307963.1| TrmH family RNA methyltransferase [Leuconostoc citreum LBAE C10]
gi|372557699|emb|CCF24083.1| TrmH family RNA methyltransferase [Leuconostoc citreum LBAE C10]
Length = 257
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL-PLPEDVPQHRVDYK 62
+ ++K R++ +L+G ++ +A+KA K V ++ + + L +P VP V +
Sbjct: 18 LATKKGRQENRTYLLDGWHLVEEAIKAKAKFHAVMATEAQMAEHLNDVPHGVPAFEVSEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + DP + + DNI+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPDK---TFDPTYVHDGAWLFLDNIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G R VV G D Y KV+RA
Sbjct: 135 GFRGVVLGTGTADAYSPKVVRA 156
>gi|297617661|ref|YP_003702820.1| tRNA/rRNA methyltransferase SpoU [Syntrophothermus lipocalidus DSM
12680]
gi|297145498|gb|ADI02255.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
DSM 12680]
Length = 265
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 5/141 (3%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP---EDVPQHRVDYK 62
RK R+++G ++EG R++ +A+K ++ V + D+ E+ + +R+ +
Sbjct: 18 ERKARDREGKFLVEGVRMVREAMKRPELVEYVLVA-CDVTGEMEEEFWRDAASVYRIRPE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ +D P GI+ + P SI P S L ++ DN+RDPGN+G+ILR A G
Sbjct: 77 LVKEITDTENPSGIVAVCRKPVWDWESI-PESDGLILIVDNLRDPGNLGTILRTAWAAGV 135
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
V +G VD+Y+ KVIR++
Sbjct: 136 DAVFLLKGTVDMYNPKVIRSS 156
>gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
gi|424898819|ref|ZP_18322373.1| RNA methyltransferase, TrmH family [Enterococcus faecium R497]
gi|430847722|ref|ZP_19465556.1| RNA methyltransferase [Enterococcus faecium E1133]
gi|430849350|ref|ZP_19467131.1| RNA methyltransferase [Enterococcus faecium E1185]
gi|431077000|ref|ZP_19495036.1| RNA methyltransferase [Enterococcus faecium E1604]
gi|431414381|ref|ZP_19512200.1| RNA methyltransferase [Enterococcus faecium E1630]
gi|431750242|ref|ZP_19538967.1| RNA methyltransferase [Enterococcus faecium E2297]
gi|431759593|ref|ZP_19548204.1| RNA methyltransferase [Enterococcus faecium E3346]
gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
gi|402932039|gb|EJX51575.1| RNA methyltransferase, TrmH family [Enterococcus faecium R497]
gi|430536396|gb|ELA76764.1| RNA methyltransferase [Enterococcus faecium E1133]
gi|430538196|gb|ELA78495.1| RNA methyltransferase [Enterococcus faecium E1185]
gi|430566455|gb|ELB05568.1| RNA methyltransferase [Enterococcus faecium E1604]
gi|430589114|gb|ELB27259.1| RNA methyltransferase [Enterococcus faecium E1630]
gi|430610171|gb|ELB47325.1| RNA methyltransferase [Enterococcus faecium E2297]
gi|430625774|gb|ELB62377.1| RNA methyltransferase [Enterococcus faecium E3346]
Length = 254
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSKDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|126662427|ref|ZP_01733426.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
BAL38]
gi|126625806|gb|EAZ96495.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
BAL38]
Length = 241
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+++ EG +++ + L +N +L+ +F ++ D P H V
Sbjct: 13 LQQKKYRKQEQLFFAEGVKVVQELLNSNFELQDLFTTKED----FPSVYKNKVHAVSDLE 68
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L TP + +F++P + L + D++RDPGN+G+I+R+C G
Sbjct: 69 LKKISALTTPNTCLAVFKMPKAK----NFVESGLILALDDVRDPGNLGTIIRLCDWFGIE 124
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+ CS VDIY+ KV++A
Sbjct: 125 TLFCSEESVDIYNPKVVQAT 144
>gi|218288919|ref|ZP_03493170.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
gi|218241008|gb|EED08185.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
Length = 467
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 81/148 (54%), Gaps = 17/148 (11%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH-RVDYK 62
+K+R+ RE+ G ++EG+R++ + L + L+L+ + W++ + P PE + QH + D +
Sbjct: 18 LKTRRGRERTGLFLVEGERLVAELLNSPLRLEALL---WNVASDEP-PEALWQHPKADGR 73
Query: 63 NIQLW-------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
+L +D TP G++ + +P +P +V D I+DPGN+G+++R
Sbjct: 74 RYELSPQAFAAVADTETPQGLMAVASIP-----QTEPQHGDRVLVLDAIQDPGNVGTLVR 128
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++V G D Y KV+RA+
Sbjct: 129 SAEAFGFGEIVFGTGTADPYAPKVVRAS 156
>gi|431301311|ref|ZP_19507630.1| RNA methyltransferase [Enterococcus faecium E1626]
gi|430580501|gb|ELB18968.1| RNA methyltransferase [Enterococcus faecium E1626]
Length = 254
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSKDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|393718455|ref|ZP_10338382.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas echinoides ATCC
14820]
Length = 267
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL--PLPEDVPQHRVDY 61
++ ++ R ++G + EG RIL +A +A + +FF++ L L DV
Sbjct: 19 LREKRHRREEGLFLAEGLRILTEAREAGRIPQYLFFARDSAAHPLVQALVADV--ETAGG 76
Query: 62 KNIQLWSDLVT-------PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ I+ D+++ P ++G+F A +AS+D +S + +V + +RDPGN+G+IL
Sbjct: 77 EAIETVPDILSKLSGKDNPQAVVGVFPEFARDLASLDRSSAAIWLVAERLRDPGNLGTIL 136
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA ++ CVD + + +RA+
Sbjct: 137 RTGDAVGAGGLILIGECVDPFSVEAVRAS 165
>gi|306844418|ref|ZP_07477008.1| tRNA/rRNA methyltransferase [Brucella inopinata BO1]
gi|306275231|gb|EFM56981.1| tRNA/rRNA methyltransferase [Brucella inopinata BO1]
Length = 297
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K E V
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKTVEQVAARTFAKGGLVL 104
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K I + P + G+FE H +AS+ P + I D +RDPGN+G+++R
Sbjct: 105 EVTEKVISAITRRDNPQMVAGVFEQQYHQLASLKPKGNDVYIALDRVRDPGNLGTVIRTA 164
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D Y + +RA
Sbjct: 165 DAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|347535475|ref|YP_004842900.1| putative tRNA/rRNA methyltransferase [Flavobacterium branchiophilum
FL-15]
gi|345528633|emb|CCB68663.1| Probable tRNA/rRNA methyltransferase [Flavobacterium branchiophilum
FL-15]
Length = 244
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 18/148 (12%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVF-----FSQWDILKELPLPEDVP 55
+V + +K R+ ++EG++ +I+ L ++ K +F F I+K + +
Sbjct: 10 IVSLHQKKFRQLHQMFIVEGEKSIIEFLNSHFKAVHLFVTEPLFETQSIIKPTMISD--- 66
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
D K I S L TP + +F++P + SI+ L + D+IRDPGN+G+I+R
Sbjct: 67 ---ADLKKI---STLATPNNCLAVFQIPNN--QSINTTGLL--VALDDIRDPGNLGTIIR 116
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+C G ++CS V++Y+ KV++A
Sbjct: 117 LCDWFGIETLICSTNTVEVYNPKVVQAT 144
>gi|258512133|ref|YP_003185567.1| tRNA/rRNA methyltransferase SpoU [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478859|gb|ACV59178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 261
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 81/148 (54%), Gaps = 17/148 (11%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH-RVDYK 62
+K+R+ RE+ G ++EG+R++ + L + L+L+ + W++ + P P+ + +H + D +
Sbjct: 17 LKTRRGRERLGLFLVEGERLVAELLNSPLRLEALL---WNVASDEP-PDALWRHPKADGR 72
Query: 63 NIQLW-------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
+L +D TP G++ + +P +P P +V D I+DPGN G+++R
Sbjct: 73 RYELSPQAFAAVADTETPQGLMAVAAIP-----RAEPRYGPRVLVLDAIQDPGNAGTLVR 127
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A G +++ G D Y KV+RA+
Sbjct: 128 SAEAFGFGEILFGTGTADPYAPKVVRAS 155
>gi|406674340|ref|ZP_11081548.1| hypothetical protein HMPREF9700_02090 [Bergeyella zoohelcum CCUG
30536]
gi|405584367|gb|EKB58282.1| hypothetical protein HMPREF9700_02090 [Bergeyella zoohelcum CCUG
30536]
Length = 249
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R+K ++EG +I+ + + K++ +F + D + P + +
Sbjct: 20 LDKKKFRQKYDLFIVEGNKIISELENSAFKVEKIFTTTPDFFSQSPFSITT----ITEQQ 75
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L P + + +L P++ I +N+V DNI+DPGN+G+I+R+ G
Sbjct: 76 LRKISHLQNPKDSLALCQLL--PLSEI--VDTAINLVLDNIQDPGNLGTIIRLADWFGIE 131
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q++CS+ VD+Y+ KVI+A
Sbjct: 132 QIICSKETVDVYNPKVIQAT 151
>gi|423316436|ref|ZP_17294341.1| hypothetical protein HMPREF9699_00912 [Bergeyella zoohelcum ATCC
43767]
gi|405583486|gb|EKB57426.1| hypothetical protein HMPREF9699_00912 [Bergeyella zoohelcum ATCC
43767]
Length = 249
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R+K ++EG +I+ + + K++ +F + D + P + +
Sbjct: 20 LDKKKFRQKYDLFIVEGNKIISELENSAFKVEKIFTTTPDFFSQSPFSITT----ITEQQ 75
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L P + + +L P++ I +N+V DNI+DPGN+G+I+R+ G
Sbjct: 76 LRKISHLQNPKDSLALCQLL--PLSEI--VDTAINLVLDNIQDPGNLGTIIRLADWFGIE 131
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q++CS+ VD+Y+ KVI+A
Sbjct: 132 QIICSKETVDVYNPKVIQAT 151
>gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 253
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLK-MVFFSQWDILKELPLPEDVPQHRVDYK 62
+ ++K R+++ +L+G ++ +ALK N K++ ++ S+++ L E+ +P++ + +
Sbjct: 17 LNTKKGRKRQNKYILDGLHLVKEALKVNKKVEELLITSKFEHLNEIEIPDETKVIMISEE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S+ TP GI GI + I + + ++ D ++DPGN+G+++R A G
Sbjct: 77 VSKSISETQTPQGIFGIVSIEEEKI-TYPQKDVGAWLMLDGVQDPGNIGTMVRTADAAGF 135
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
V+ G D+Y+ KV+RA
Sbjct: 136 SGVILGEGSADLYNPKVVRA 155
>gi|417895757|ref|ZP_12539735.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21235]
gi|341841434|gb|EGS82895.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21235]
Length = 246
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLNQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|417901470|ref|ZP_12545346.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21266]
gi|341845309|gb|EGS86511.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21266]
Length = 246
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIELVRLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPHYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|430001958|emb|CCF17738.1| putative RRNA methylase protein, TrmH family [Rhizobium sp.]
Length = 286
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ ++K RE+ G M EG +++IDAL+ ++++ +++ K PL E V
Sbjct: 33 LSNKKDREQSGTFMAEGLKLVIDALELGWTIRILAYAK--AAKGKPLVEQVAARTIAKGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K + + P ++GIFE P+ + P+ + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVLSSITRRDNPQMVVGIFEQRWTPLDDLRPSQGVTYVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ C D + + +RA
Sbjct: 151 RTADAAGASGVILVGECTDPFSLETVRA 178
>gi|408370627|ref|ZP_11168402.1| tRNA/rRNA methyltransferase [Galbibacter sp. ck-I2-15]
gi|407743864|gb|EKF55436.1| tRNA/rRNA methyltransferase [Galbibacter sp. ck-I2-15]
Length = 239
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R K + EG + +++ L++ L ++ +Q + LP+ V ++
Sbjct: 13 LHQKKYRNKHELFIAEGIKGVLELLESKLLPYALYVTQE--VDGLPIGNTV---KIGAGE 67
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L TP I+G+F +P + L LN N+RDPGN+G+I+R+C G
Sbjct: 68 MKKLSCLKTPTEILGVFHMPEQKSLKTEGIILALN----NVRDPGNLGTIIRLCDWFGIS 123
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q+VCS VD Y+ KV++A
Sbjct: 124 QLVCSVNTVDCYNPKVVQAT 143
>gi|403387039|ref|ZP_10929096.1| RNA methyltransferase [Clostridium sp. JC122]
Length = 257
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
+K +K R +G ++EG R + +A+K+ +K +F S+ +D + + DV
Sbjct: 18 LKEKKHRNSQGLFLVEGFRFIEEAIKSEFNIKYIFISENCTSENYD--RYINFSGDVYTV 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
I +D TP G I + E A +++ D + I+ D I+DPGN+G+I+R
Sbjct: 76 SSSIFKIISSTD--TPQGAIAVVENKALNLSNRDG----VYILVDRIQDPGNLGTIIRTA 129
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A ++ ++G VDIY+ K +R+
Sbjct: 130 HASDCLGIIITKGTVDIYNEKTLRST 155
>gi|389869093|ref|YP_006376516.1| RNA methyltransferase [Enterococcus faecium DO]
gi|388534342|gb|AFK59534.1| RNA methyltransferase [Enterococcus faecium DO]
Length = 190
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|69249394|ref|ZP_00604959.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
gi|68194181|gb|EAN08711.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
Length = 190
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|407718703|ref|YP_006796108.1| rRNA methylase [Leuconostoc carnosum JB16]
gi|407242459|gb|AFT82109.1| rRNA methylase [Leuconostoc carnosum JB16]
Length = 257
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ ++K R++ +L+G ++ +A+KA K V ++ + + LP +P VP + +
Sbjct: 18 LATKKGRQENRTYLLDGWHLVEEAVKAGAKFHAVMATEEQMAEHLPDVPHGVPAFEISAE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + +P+ + ++ DNI+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPDK---TFNPSYVHDGAWLLLDNIQDPGNVGTLIRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D++ KV+RA
Sbjct: 135 GFKGVVLGAGTADVFAPKVVRA 156
>gi|379020844|ref|YP_005297506.1| hypothetical protein M013TW_1070 [Staphylococcus aureus subsp.
aureus M013]
gi|418952065|ref|ZP_13504115.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-160]
gi|359830153|gb|AEV78131.1| hypothetical protein M013TW_1070 [Staphylococcus aureus subsp.
aureus M013]
gi|375370102|gb|EHS73938.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-160]
Length = 246
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|416839774|ref|ZP_11903132.1| rRNA methyltransferase [Staphylococcus aureus O11]
gi|416847329|ref|ZP_11907063.1| rRNA methyltransferase [Staphylococcus aureus O46]
gi|417904123|ref|ZP_12547953.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21269]
gi|323440686|gb|EGA98396.1| rRNA methyltransferase [Staphylococcus aureus O11]
gi|323442371|gb|EGB00001.1| rRNA methyltransferase [Staphylococcus aureus O46]
gi|341847946|gb|EGS89115.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21269]
Length = 246
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|258423820|ref|ZP_05686706.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
gi|417891935|ref|ZP_12535992.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21200]
gi|418308171|ref|ZP_12919822.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21194]
gi|257846052|gb|EEV70080.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
gi|341851221|gb|EGS92150.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21200]
gi|365241261|gb|EHM82009.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21194]
Length = 246
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSEIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|395780487|ref|ZP_10460949.1| hypothetical protein MCW_01036 [Bartonella washoensis 085-0475]
gi|395418833|gb|EJF85150.1| hypothetical protein MCW_01036 [Bartonella washoensis 085-0475]
Length = 275
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R ++G M EG +++IDAL K++ + FS+ + + E+ H V
Sbjct: 26 LSQKKNRNREGIFMAEGLKLVIDALNLGWKIQTLIFSKSKLGN--TVIENTAAHTVASGG 83
Query: 64 I------QLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
I ++ L P ++GIF+ P+ I S + + D +RDPGN+G+I+
Sbjct: 84 IVIKASQKIMESLTRRDNPQAVVGIFKQQWQPLEMIKQLSEDVYVALDRVRDPGNLGTII 143
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA+ ++ D + + +RA
Sbjct: 144 RTADAVGAKGIILIGETTDPFSPETVRAT 172
>gi|224476244|ref|YP_002633850.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420851|emb|CAL27665.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 248
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 78/138 (56%), Gaps = 9/138 (6%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFF---SQWDILKELPLPEDVPQHRVDYKNIQ 65
+R+K G +++EG ++ +A+K+ L +K +F ++DI EL + Q+++++K +
Sbjct: 23 ERDKSGLVLVEGTHLIDEAVKSRLTIKQLFIVEPERFDI--EL-IEAAEEQYQINFKVAE 79
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
S VTP GI I E P ++ A L + D I+DPGN+G+++R A +
Sbjct: 80 ALSGTVTPQGIFAIIEKPDVS-KQVEVAKQVL--LLDRIQDPGNLGTLIRTADAAALDLI 136
Query: 126 VCSRGCVDIYDNKVIRAA 143
V S G D + +KV+RA+
Sbjct: 137 VMSPGSADPFQDKVLRAS 154
>gi|418888928|ref|ZP_13443064.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1524]
gi|377754438|gb|EHT78347.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1524]
Length = 246
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSEIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|88802138|ref|ZP_01117666.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
23-P]
gi|88782796|gb|EAR13973.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
23-P]
Length = 243
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 79/144 (54%), Gaps = 10/144 (6%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+ + +K R+K + EG +++ + L+++ ++ ++F + + LP + V RV
Sbjct: 11 ITSLSQKKYRQKHNLFIAEGIKVVNELLQSDFEVALIFCTN-EFKTSLPKAKIV---RVS 66
Query: 61 YKNIQLWSDLVTPPGIIGIFELPA-HPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ S L +P ++ +F++P PI + L + D I DPGN+G+I+R+C
Sbjct: 67 ETELNKISSLKSPNKVLSLFKIPEDKPIQNSG-----LILALDAINDPGNLGTIIRLCDW 121
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G Q++CS+ VD Y+ KV++A+
Sbjct: 122 FGISQLICSKDTVDCYNQKVVQAS 145
>gi|417889095|ref|ZP_12533194.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21195]
gi|341853163|gb|EGS94045.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21195]
Length = 246
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|384549896|ref|YP_005739148.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|418563160|ref|ZP_13127602.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21262]
gi|302332745|gb|ADL22938.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|371971704|gb|EHO89100.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21262]
Length = 246
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|49483300|ref|YP_040524.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus MRSA252]
gi|257425188|ref|ZP_05601614.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427851|ref|ZP_05604249.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430486|ref|ZP_05606868.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433248|ref|ZP_05609606.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257436087|ref|ZP_05612134.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
gi|282903685|ref|ZP_06311573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus C160]
gi|282905454|ref|ZP_06313309.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908427|ref|ZP_06316258.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910712|ref|ZP_06318515.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282913912|ref|ZP_06321699.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M899]
gi|282918835|ref|ZP_06326570.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282923957|ref|ZP_06331633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|283957880|ref|ZP_06375331.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293500947|ref|ZP_06666798.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509904|ref|ZP_06668613.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|293526491|ref|ZP_06671176.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M1015]
gi|295427624|ref|ZP_06820256.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297591422|ref|ZP_06950060.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|384867982|ref|YP_005748178.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|386830672|ref|YP_006237326.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|415684418|ref|ZP_11449547.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CGS00]
gi|417799019|ref|ZP_12446171.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21310]
gi|418559322|ref|ZP_13123868.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21252]
gi|418566436|ref|ZP_13130817.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21264]
gi|418581967|ref|ZP_13146045.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1605]
gi|418595239|ref|ZP_13158860.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21342]
gi|418602374|ref|ZP_13165780.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21345]
gi|418655602|ref|ZP_13217453.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-105]
gi|418891767|ref|ZP_13445882.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1176]
gi|418897674|ref|ZP_13451744.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900544|ref|ZP_13454601.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1214]
gi|418908846|ref|ZP_13462851.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG149]
gi|418916929|ref|ZP_13470888.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1267]
gi|418922716|ref|ZP_13476633.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1233]
gi|418982047|ref|ZP_13529755.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1242]
gi|418985715|ref|ZP_13533401.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1500]
gi|418993755|ref|ZP_13541392.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG290]
gi|49241429|emb|CAG40113.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257272164|gb|EEV04296.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274692|gb|EEV06179.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278614|gb|EEV09233.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281341|gb|EEV11478.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257284369|gb|EEV14489.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
gi|282313929|gb|EFB44321.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|282316645|gb|EFB47019.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282321980|gb|EFB52304.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M899]
gi|282325317|gb|EFB55626.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282328092|gb|EFB58374.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282330746|gb|EFB60260.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595303|gb|EFC00267.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus C160]
gi|283790029|gb|EFC28846.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920563|gb|EFD97626.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M1015]
gi|291095952|gb|EFE26213.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467354|gb|EFF09871.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|295127982|gb|EFG57616.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576308|gb|EFH95024.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|312438487|gb|ADQ77558.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|315193807|gb|EFU24202.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CGS00]
gi|334274911|gb|EGL93217.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21310]
gi|371970649|gb|EHO88066.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21264]
gi|371975613|gb|EHO92907.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21252]
gi|374396074|gb|EHQ67325.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21345]
gi|374402106|gb|EHQ73149.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21342]
gi|375036353|gb|EHS29428.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-105]
gi|377703012|gb|EHT27328.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1214]
gi|377704328|gb|EHT28637.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1242]
gi|377705533|gb|EHT29837.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1500]
gi|377710377|gb|EHT34615.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1605]
gi|377731099|gb|EHT55156.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1176]
gi|377736039|gb|EHT60069.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1233]
gi|377746914|gb|EHT70884.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG290]
gi|377750103|gb|EHT74041.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1267]
gi|377754842|gb|EHT78748.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG149]
gi|377760709|gb|EHT84585.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC341D]
gi|385196064|emb|CCG15682.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 246
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|384547375|ref|YP_005736628.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
gi|298694424|gb|ADI97646.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
Length = 246
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|265983327|ref|ZP_06096062.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
gi|306839597|ref|ZP_07472401.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
gi|264661919|gb|EEZ32180.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
gi|306405295|gb|EFM61570.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
Length = 297
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K E V
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKTVEQVAARTFAKGGLVL 104
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K I + P + G+FE H +AS+ P + + D +RDPGN+G+++R
Sbjct: 105 EVTEKVISAITRRDNPQMVAGVFEQQYHQLASLKPKGNDVYVALDRVRDPGNLGTVIRTA 164
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D Y + +RA
Sbjct: 165 DAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|418283093|ref|ZP_12895850.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21202]
gi|365168690|gb|EHM60028.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21202]
Length = 246
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|387780249|ref|YP_005755047.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177351|emb|CCC87817.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus LGA251]
Length = 246
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
gi|425032784|ref|ZP_18437795.1| RNA methyltransferase, TrmH family [Enterococcus faecium 515]
gi|431003757|ref|ZP_19488855.1| RNA methyltransferase [Enterococcus faecium E1578]
gi|431775501|ref|ZP_19563773.1| RNA methyltransferase [Enterococcus faecium E2560]
gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
gi|403011778|gb|EJY25061.1| RNA methyltransferase, TrmH family [Enterococcus faecium 515]
gi|430561846|gb|ELB01100.1| RNA methyltransferase [Enterococcus faecium E1578]
gi|430642770|gb|ELB78536.1| RNA methyltransferase [Enterococcus faecium E2560]
Length = 254
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMMLTSKDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|334341008|ref|YP_004545988.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum ruminis DSM
2154]
gi|334092362|gb|AEG60702.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum ruminis DSM
2154]
Length = 265
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS----QWD----ILKELPLPEDVP 55
+ R R+K+ ++EG R++ +A + +L+ ++ Q D +L+E E+
Sbjct: 17 LAQRGFRQKEKKFLVEGVRLVEEAFASGWRLESFVYTPEALQLDRSAQLLRE---AENRC 73
Query: 56 QH--RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGS 112
Q +V + SD TP GI+ + P + +A + P +PL +V D ++DPGN+G+
Sbjct: 74 QQVLQVTPGIMAEISDTETPQGILAVLWQPEYALADVLPPGQIPLVVVVDRVQDPGNLGT 133
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
I+R A GA V+ +G VD+Y+ K +R+
Sbjct: 134 IIRSADAAGATGVILLKGTVDLYNPKTLRS 163
>gi|444516378|gb|ELV11127.1| RNA methyltransferase-like protein 1 [Tupaia chinensis]
Length = 373
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP--EDVPQHR 58
M +KSR R+K+G ++LEG+R++ DALKA K+ FFS+ + +KELP+ + V +
Sbjct: 108 MTIVKSRPFRDKQGKILLEGRRLIADALKAGAVPKVFFFSRLEYIKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIG 78
V +++I+ WSDLVTP GI+G
Sbjct: 168 VKFEDIKDWSDLVTPQGILG 187
>gi|374595363|ref|ZP_09668367.1| tRNA/rRNA methyltransferase (SpoU) [Gillisia limnaea DSM 15749]
gi|373870002|gb|EHQ02000.1| tRNA/rRNA methyltransferase (SpoU) [Gillisia limnaea DSM 15749]
Length = 244
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 15/146 (10%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ---H 57
+ ++ +K R K ++EG + + + L +N L ++ ++ +I DVP H
Sbjct: 10 ITSLEQKKSRTKNRLFIVEGIKGISEILASNYTLDSLYTTK-EIF-------DVPASKAH 61
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
++ +++ S L TP I +FE+P + S D L I D +RDPGN+G+I+R+C
Sbjct: 62 LINEADLKKISRLKTPQTAIALFEIPE--VKSPDLNGLI--IALDGVRDPGNLGTIIRLC 117
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
G + ++CS+ VD Y+ KV++A+
Sbjct: 118 DWFGVKTLLCSKDTVDSYNPKVVQAS 143
>gi|430830975|ref|ZP_19449030.1| RNA methyltransferase [Enterococcus faecium E0333]
gi|430482197|gb|ELA59328.1| RNA methyltransferase [Enterococcus faecium E0333]
Length = 254
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAALSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|399516609|ref|ZP_10758206.1| rRNA methylase [Leuconostoc pseudomesenteroides 4882]
gi|398648518|emb|CCJ66233.1| rRNA methylase [Leuconostoc pseudomesenteroides 4882]
Length = 258
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ S+K R + +L+G ++ +A+KAN K V + + LP +P VP + +
Sbjct: 18 LSSKKGRLENHTYLLDGWHLVEEAVKANAKFHAVMATSSQMTLHLPEVPHGVPAFEISEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + DPA + ++ D I+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPE---KTFDPAYVHDGAWLLLDQIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D + KV+RA
Sbjct: 135 GFKGVVLGEGTADAFAPKVVRA 156
>gi|418312506|ref|ZP_12924015.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21334]
gi|365238151|gb|EHM78988.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21334]
Length = 246
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPHYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|225626689|ref|ZP_03784728.1| RNA methyltransferase [Brucella ceti str. Cudo]
gi|261218151|ref|ZP_05932432.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
gi|261221377|ref|ZP_05935658.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
gi|261321001|ref|ZP_05960198.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
gi|261759264|ref|ZP_06002973.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
gi|265997338|ref|ZP_06109895.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
gi|225618346|gb|EEH15389.1| RNA methyltransferase [Brucella ceti str. Cudo]
gi|260919961|gb|EEX86614.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
gi|260923240|gb|EEX89808.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
gi|261293691|gb|EEX97187.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
gi|261739248|gb|EEY27244.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
gi|262551806|gb|EEZ07796.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
Length = 297
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 7/144 (4%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW-------DILKELPLPEDVPQHRV 59
+K R+++G + EG +++IDAL+ + ++K + F++ + + +D V
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVAARTFAKDGLVLEV 106
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
K I + P + G+FE H +A + P + + D +RDPGN+G+++R A
Sbjct: 107 TEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADA 166
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
VGA+ V+ D Y + +RA
Sbjct: 167 VGAKGVILIGDTTDPYSLETVRAT 190
>gi|425055729|ref|ZP_18459199.1| RNA methyltransferase, TrmH family [Enterococcus faecium 505]
gi|430834188|ref|ZP_19452195.1| RNA methyltransferase [Enterococcus faecium E0679]
gi|403033230|gb|EJY44746.1| RNA methyltransferase, TrmH family [Enterococcus faecium 505]
gi|430485419|gb|ELA62325.1| RNA methyltransferase [Enterococcus faecium E0679]
Length = 254
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMMLTSKDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|282916386|ref|ZP_06324148.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus D139]
gi|283770197|ref|ZP_06343089.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus H19]
gi|282319826|gb|EFB50174.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus D139]
gi|283460344|gb|EFC07434.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus H19]
Length = 246
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIIITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|253731748|ref|ZP_04865913.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253724562|gb|EES93291.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 246
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPHYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC
13124]
Length = 257
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 75/141 (53%), Gaps = 13/141 (9%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE------LPLPEDVPQHRVDYK 62
R K ++EG R + +A+K+ + + + F++ KE L + E++ +++
Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTES--FKEKNPDLFLKINENIKLIQMNET 80
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ P GI+G+ + + S + L ++ D ++DPGNMG+I+R A GA
Sbjct: 81 LLKQLCSTENPQGIVGVINMQNKELKSGE-----LVVLVDKVQDPGNMGTIIRTAHAAGA 135
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+V ++G VDIY++K +R+
Sbjct: 136 AGIVMTKGTVDIYNDKTLRST 156
>gi|156741421|ref|YP_001431550.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
13941]
gi|156232749|gb|ABU57532.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
13941]
Length = 235
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 14/136 (10%)
Query: 16 LMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR----VDY----KNIQLW 67
+LEG R++ DAL++ L +V ++ + L++ P D+ Q V Y + I
Sbjct: 2 FVLEGVRLVADALESGATLTLVLYAP-EQLQQTPAGLDLLQRLQRLPVGYAATPQVIASV 60
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
+D V P G++ + P I P L +V D ++DPGN+G++LR AVG Q +C
Sbjct: 61 ADTVHPQGVVALARWP-----QIPPGKPGLILVIDAVQDPGNLGTLLRSAEAVGVAQTLC 115
Query: 128 SRGCVDIYDNKVIRAA 143
S G VD+Y KV+R+A
Sbjct: 116 SVGTVDVYAPKVVRSA 131
>gi|420146657|ref|ZP_14654049.1| Putative tRNA/rRNA methyltransferase [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398401034|gb|EJN54543.1| Putative tRNA/rRNA methyltransferase [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 251
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE++ +LEG ++ +AL A + M+ ++ D LP DVP + + +
Sbjct: 18 LTRKKNREEQQRYLLEGVHLVREALNAQQPITMILATE-DFQAAAWLPNDVPTYWLKPEV 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S VT GI + LP + S ++ D ++DPGN+G+++R A G
Sbjct: 77 AHTLSATVTTQGIFAVLPLPEAKLPQTFTGSW---LLLDGVQDPGNIGTMVRTADAAGLT 133
Query: 124 QVVCSRGCVDIYDNKVIRA 142
VV G D++ KV+R+
Sbjct: 134 GVVLGEGSADLFSAKVLRS 152
>gi|253733629|ref|ZP_04867794.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|417899571|ref|ZP_12543473.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21259]
gi|253728329|gb|EES97058.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|341844499|gb|EGS85711.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21259]
Length = 246
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPHYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|420185537|ref|ZP_14691629.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM040]
gi|394254523|gb|EJD99492.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM040]
Length = 246
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 74/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ +++ +F D + + ++++ K
Sbjct: 18 LKKKRERDKTGLALIEGIHLIEEAYQSQIEVIQLFIVDPDRMSSSIIDYAKEVYQINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S VTP G I + P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEVLSGTVTPQGFFAIIKKPTY-----DKTLAKQVLLIDRIQDPGNLGTLIRTADAAGLE 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D + +KVIRA+
Sbjct: 133 LIVMEKGTADPFQDKVIRAS 152
>gi|150024430|ref|YP_001295256.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
gi|149770971|emb|CAL42438.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
JIP02/86]
Length = 242
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 78/140 (55%), Gaps = 14/140 (10%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR---VDYKN 63
+K R++ EG +++ + L++N +L+ ++ ++ P+ DV + + + +
Sbjct: 16 KKYRKQYQLFFAEGAKVIQELLQSNFELEHLYCTK-------PMFSDVSELKKTIISDSD 68
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ + L T + +F++P I+ + L + D+IRDPGN+G+I+R+C G
Sbjct: 69 LKKITALTTANDCLAVFKIPQEK--QIENSGLI--VALDDIRDPGNLGTIIRLCDWFGIA 124
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q+VCS VD+Y+ KV++A
Sbjct: 125 QIVCSEQTVDVYNPKVVQAT 144
>gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase SpoU [Clostridium beijerinckii NCIMB
8052]
gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
8052]
Length = 260
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDY 61
+K RK R K ++EG R++ +A KA + + + ++ D + E + ++
Sbjct: 18 LKERKNRTKTSRYIIEGFRLVQEAFKAKVDVDYLIVTEDAHDKVDEFLGKYINGEIKIYE 77
Query: 62 KNIQLWSDLVT---PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ L+ +L++ P GI+ + ++ + D ++CD ++DPGN+G+I+R
Sbjct: 78 ISSNLFKELISTENPQGILAVIKMNTME-SKFDG---DFYLLCDKVQDPGNLGTIIRTAH 133
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++++ ++G VDIY+ K IR+
Sbjct: 134 AAGVQEIILTKGTVDIYNEKTIRST 158
>gi|15924127|ref|NP_371661.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
gi|15926721|ref|NP_374254.1| hypothetical protein SA0984 [Staphylococcus aureus subsp. aureus
N315]
gi|21282749|ref|NP_645837.1| hypothetical protein MW1020 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485975|ref|YP_043196.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651746|ref|YP_186010.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
gi|87160549|ref|YP_493734.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194838|ref|YP_499636.1| hypothetical protein SAOUHSC_01091 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267629|ref|YP_001246572.1| tRNA/rRNA methyltransferase SpoU [Staphylococcus aureus subsp.
aureus JH9]
gi|150393684|ref|YP_001316359.1| tRNA/rRNA methyltransferase SpoU [Staphylococcus aureus subsp.
aureus JH1]
gi|151221260|ref|YP_001332082.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979459|ref|YP_001441718.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509311|ref|YP_001574970.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221140465|ref|ZP_03564958.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253317080|ref|ZP_04840293.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255005923|ref|ZP_05144524.2| RNA methyltransferase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795133|ref|ZP_05644112.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
gi|258407159|ref|ZP_05680308.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
gi|258421750|ref|ZP_05684671.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
gi|258432906|ref|ZP_05688595.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
gi|258443396|ref|ZP_05691739.1| rRNA methylase [Staphylococcus aureus A8115]
gi|258446069|ref|ZP_05694231.1| rRNA methylase [Staphylococcus aureus A6300]
gi|258449818|ref|ZP_05697916.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
gi|258451834|ref|ZP_05699855.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
gi|258454917|ref|ZP_05702880.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
gi|262048719|ref|ZP_06021601.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
gi|262051661|ref|ZP_06023880.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
gi|269202749|ref|YP_003282018.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
gi|282894164|ref|ZP_06302395.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
gi|282919914|ref|ZP_06327643.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282928659|ref|ZP_06336256.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
gi|284024062|ref|ZP_06378460.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
gi|294848127|ref|ZP_06788874.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
gi|295405941|ref|ZP_06815750.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296275624|ref|ZP_06858131.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
gi|297208226|ref|ZP_06924656.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246501|ref|ZP_06930339.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300912303|ref|ZP_07129746.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381306|ref|ZP_07363959.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014330|ref|YP_005290566.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus VC40]
gi|384861731|ref|YP_005744451.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384864363|ref|YP_005749722.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|384869670|ref|YP_005752384.1| tRNA/rRNA methyltransferase SpoU [Staphylococcus aureus subsp.
aureus T0131]
gi|387142748|ref|YP_005731141.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|387150278|ref|YP_005741842.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981]
gi|415688456|ref|ZP_11452146.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|415694447|ref|ZP_11455898.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|417648500|ref|ZP_12298324.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21189]
gi|417652170|ref|ZP_12301923.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21172]
gi|417655662|ref|ZP_12305372.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21193]
gi|417796260|ref|ZP_12443475.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21305]
gi|417801433|ref|ZP_12448523.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21318]
gi|417894593|ref|ZP_12538607.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21201]
gi|418280949|ref|ZP_12893771.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21178]
gi|418286360|ref|ZP_12899006.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21209]
gi|418318063|ref|ZP_12929478.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21232]
gi|418321821|ref|ZP_12933160.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus VCU006]
gi|418424277|ref|ZP_12997401.1| hypothetical protein MQA_02068 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427267|ref|ZP_13000281.1| hypothetical protein MQC_01646 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418430112|ref|ZP_13003029.1| hypothetical protein MQE_01568 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418433071|ref|ZP_13005853.1| hypothetical protein MQG_01480 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418436746|ref|ZP_13008550.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS5]
gi|418439618|ref|ZP_13011327.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS6]
gi|418442669|ref|ZP_13014272.1| hypothetical protein MQM_02276 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418445728|ref|ZP_13017207.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS8]
gi|418448673|ref|ZP_13020067.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS9]
gi|418451497|ref|ZP_13022832.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS10]
gi|418454554|ref|ZP_13025817.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418457428|ref|ZP_13028633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418568112|ref|ZP_13132466.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21272]
gi|418570968|ref|ZP_13135222.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21283]
gi|418578967|ref|ZP_13143062.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1114]
gi|418598361|ref|ZP_13161871.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21343]
gi|418638931|ref|ZP_13201204.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-3]
gi|418643042|ref|ZP_13205228.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-24]
gi|418647595|ref|ZP_13209658.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-88]
gi|418649225|ref|ZP_13211253.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-91]
gi|418653767|ref|ZP_13215696.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-99]
gi|418657853|ref|ZP_13219607.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-111]
gi|418663436|ref|ZP_13224954.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-122]
gi|418873286|ref|ZP_13427593.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875070|ref|ZP_13429332.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC93]
gi|418877985|ref|ZP_13432220.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1165]
gi|418880811|ref|ZP_13435030.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1213]
gi|418883738|ref|ZP_13437935.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1769]
gi|418886396|ref|ZP_13440545.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1150]
gi|418894754|ref|ZP_13448851.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1057]
gi|418903346|ref|ZP_13457387.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1770]
gi|418906073|ref|ZP_13460100.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC345D]
gi|418911743|ref|ZP_13465726.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG547]
gi|418914232|ref|ZP_13468204.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC340D]
gi|418920211|ref|ZP_13474144.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC348]
gi|418925369|ref|ZP_13479271.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG2018]
gi|418928393|ref|ZP_13482279.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1612]
gi|418931199|ref|ZP_13485041.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1750]
gi|418934038|ref|ZP_13487862.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC128]
gi|418949129|ref|ZP_13501389.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-157]
gi|418953447|ref|ZP_13505440.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-189]
gi|418987958|ref|ZP_13535631.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1835]
gi|418990997|ref|ZP_13538658.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1096]
gi|419775274|ref|ZP_14301216.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus CO-23]
gi|419785785|ref|ZP_14311532.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-M]
gi|422743474|ref|ZP_16797458.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
aureus subsp. aureus MRSA177]
gi|422745633|ref|ZP_16799572.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
aureus subsp. aureus MRSA131]
gi|424777703|ref|ZP_18204662.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus CM05]
gi|424784964|ref|ZP_18211767.1| rRNA methylase [Staphylococcus aureus CN79]
gi|440708161|ref|ZP_20888836.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21282]
gi|440734584|ref|ZP_20914196.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|443635779|ref|ZP_21119901.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21236]
gi|448742608|ref|ZP_21724547.1| rRNA methylase [Staphylococcus aureus KT/314250]
gi|13700937|dbj|BAB42233.1| SA0984 [Staphylococcus aureus subsp. aureus N315]
gi|14246907|dbj|BAB57299.1| similar to rRNA methylase [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204187|dbj|BAB94885.1| MW1020 [Staphylococcus aureus subsp. aureus MW2]
gi|49244418|emb|CAG42846.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57285932|gb|AAW38026.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus COL]
gi|87126523|gb|ABD21037.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202396|gb|ABD30206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740698|gb|ABQ48996.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus JH9]
gi|149946136|gb|ABR52072.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus JH1]
gi|150374060|dbj|BAF67320.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156721594|dbj|BAF78011.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368120|gb|ABX29091.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257789105|gb|EEV27445.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
gi|257841314|gb|EEV65759.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
gi|257842083|gb|EEV66511.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
gi|257849346|gb|EEV73323.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
gi|257851486|gb|EEV75425.1| rRNA methylase [Staphylococcus aureus A8115]
gi|257855127|gb|EEV78068.1| rRNA methylase [Staphylococcus aureus A6300]
gi|257856738|gb|EEV79641.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
gi|257860442|gb|EEV83269.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
gi|257862797|gb|EEV85562.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
gi|259160396|gb|EEW45421.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
gi|259163175|gb|EEW47735.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
gi|262075039|gb|ACY11012.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
gi|269940631|emb|CBI49010.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282589698|gb|EFB94784.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
gi|282594630|gb|EFB99614.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282763650|gb|EFC03779.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
gi|285816817|gb|ADC37304.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981]
gi|294824927|gb|EFG41349.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
gi|294969376|gb|EFG45396.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296886965|gb|EFH25868.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297176607|gb|EFH35870.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300886549|gb|EFK81751.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|302750960|gb|ADL65137.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340289|gb|EFM06230.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312829530|emb|CBX34372.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128534|gb|EFT84539.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|315196860|gb|EFU27203.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320141048|gb|EFW32895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
aureus subsp. aureus MRSA131]
gi|320143105|gb|EFW34895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
aureus subsp. aureus MRSA177]
gi|329313805|gb|AEB88218.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus T0131]
gi|329725190|gb|EGG61679.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21172]
gi|329728880|gb|EGG65301.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21193]
gi|329730768|gb|EGG67147.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21189]
gi|334269759|gb|EGL88172.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21305]
gi|334276791|gb|EGL95041.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21318]
gi|341851777|gb|EGS92686.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21201]
gi|365167050|gb|EHM58527.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21178]
gi|365167068|gb|EHM58544.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21209]
gi|365224436|gb|EHM65701.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus VCU006]
gi|365244755|gb|EHM85412.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21232]
gi|371980794|gb|EHO97995.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21272]
gi|371981848|gb|EHO99009.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21283]
gi|374363027|gb|AEZ37132.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus VC40]
gi|374399718|gb|EHQ70854.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21343]
gi|375016155|gb|EHS09799.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-24]
gi|375017978|gb|EHS11573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-99]
gi|375019980|gb|EHS13523.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-3]
gi|375029305|gb|EHS22633.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-88]
gi|375029598|gb|EHS22923.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-91]
gi|375034084|gb|EHS27259.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-122]
gi|375039962|gb|EHS32874.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-111]
gi|375366340|gb|EHS70340.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-125]
gi|375369694|gb|EHS73563.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-157]
gi|375375047|gb|EHS78656.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-189]
gi|377694107|gb|EHT18472.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1165]
gi|377695618|gb|EHT19978.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1057]
gi|377696994|gb|EHT21349.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1114]
gi|377715032|gb|EHT39229.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1750]
gi|377715472|gb|EHT39662.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1769]
gi|377719746|gb|EHT43916.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1835]
gi|377723119|gb|EHT47244.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1096]
gi|377725121|gb|EHT49236.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG547]
gi|377726578|gb|EHT50689.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1150]
gi|377731704|gb|EHT55757.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1213]
gi|377738305|gb|EHT62314.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1612]
gi|377742361|gb|EHT66346.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1770]
gi|377744438|gb|EHT68415.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG2018]
gi|377757734|gb|EHT81622.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC340D]
gi|377765373|gb|EHT89223.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC345D]
gi|377765570|gb|EHT89419.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC348]
gi|377771115|gb|EHT94873.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC93]
gi|377771818|gb|EHT95572.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC128]
gi|383361992|gb|EID39351.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-M]
gi|383970958|gb|EID87048.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus CO-23]
gi|387719177|gb|EIK07129.1| hypothetical protein MQE_01568 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387719337|gb|EIK07286.1| hypothetical protein MQC_01646 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387720687|gb|EIK08590.1| hypothetical protein MQA_02068 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387725937|gb|EIK13528.1| hypothetical protein MQG_01480 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387728276|gb|EIK15769.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS5]
gi|387730839|gb|EIK18192.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS6]
gi|387736262|gb|EIK23359.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS8]
gi|387737616|gb|EIK24678.1| hypothetical protein MQM_02276 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387738349|gb|EIK25393.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS9]
gi|387745322|gb|EIK32081.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS10]
gi|387746015|gb|EIK32760.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387747986|gb|EIK34685.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS11b]
gi|402346383|gb|EJU81473.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus CM05]
gi|408423358|emb|CCJ10769.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408425348|emb|CCJ12735.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408427336|emb|CCJ14699.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408429323|emb|CCJ26488.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408431311|emb|CCJ18626.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408433305|emb|CCJ20590.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408435296|emb|CCJ22556.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408437281|emb|CCJ24524.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|421956374|gb|EKU08703.1| rRNA methylase [Staphylococcus aureus CN79]
gi|436431612|gb|ELP28965.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436505259|gb|ELP41187.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21282]
gi|443408838|gb|ELS67349.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21236]
gi|445546646|gb|ELY14933.1| rRNA methylase [Staphylococcus aureus KT/314250]
Length = 246
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPHYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|448744697|ref|ZP_21726581.1| TrmH family rRNA methyltransferase [Staphylococcus aureus KT/Y21]
gi|445562003|gb|ELY18188.1| TrmH family rRNA methyltransferase [Staphylococcus aureus KT/Y21]
Length = 246
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPHYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|196011996|ref|XP_002115861.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
gi|190581637|gb|EDV21713.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
Length = 328
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 24/154 (15%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN---- 63
+ +K ++++G ++ +A A L+L F+S +I E ++ D +
Sbjct: 45 RNNKKSSIILIDGLNVIKEAFNAGLQLHTFFYSNDNIFDE-----HFSEYIFDISDECLC 99
Query: 64 -IQLW-----SDLVTPPGIIGIFELPAHPIASIDPAS-------LPLNIVCDNIRDPGNM 110
I W + + T G+ +F P +S D S LP+ ++CDN+RDPGN+
Sbjct: 100 KIPKWYLNSMTSVQTNRGVAALFFKP--KTSSFDEISMASDKELLPVTLICDNVRDPGNL 157
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
G+I+R AA V+ + GC D + KV+R+A+
Sbjct: 158 GNIIRSAAAANCSSVILTHGCADPWQPKVMRSAS 191
>gi|153007507|ref|YP_001368722.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
gi|151559395|gb|ABS12893.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
49188]
Length = 294
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K + E V
Sbjct: 42 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKMVEQVAARTFAKGGLVL 99
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K + + P ++G+FE P+A++ P + + I D +RDPGN+G+++R
Sbjct: 100 EVTEKIMAAITRRDNPQMVVGVFEQQYRPLANLKPKNNDVYIALDRVRDPGNLGTVIRTA 159
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ ++ D Y + +RA
Sbjct: 160 DAVGAKGIILIGDTTDPYSLETVRAT 185
>gi|339481014|ref|ZP_08656673.1| rRNA methylase [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 258
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ S+K R + +L+G ++ +A+KAN K V + + LP +P VP + +
Sbjct: 18 LSSKKGRLENHTYLLDGWHLVEEAVKANAKFHAVMATSSQMALHLPEVPHGVPAFEISEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + DPA + ++ D I+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPEK---TFDPAYVHDGAWLLLDQIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D + KV+RA
Sbjct: 135 GFKGVVLGEGTADAFAPKVVRA 156
>gi|407777248|ref|ZP_11124518.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor pacificus pht-3B]
gi|407300948|gb|EKF20070.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor pacificus pht-3B]
Length = 273
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW----DILKELPLPEDVPQHRVDYK 62
+K R+++ M EG +++IDA +A ++ + +++ D ++ L V
Sbjct: 21 KKFRDREHLFMTEGLKLVIDAFEAGWTIRTLLYAKAGRGNDAVERLAARTVAAGGLVLVV 80
Query: 63 NIQLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ ++ S + P ++G+FE P+ ++ PA + + D +RDPGN+G+ILR A
Sbjct: 81 SEKVLSAVTRRDNPQMVVGVFEQKTLPLDAVRPADADVWVALDRVRDPGNLGTILRTADA 140
Query: 120 VGARQVVCSRGCVDIYDNKVIRA 142
VGA+ V+ C D + + +RA
Sbjct: 141 VGAKGVILVGDCTDSFSIETVRA 163
>gi|168215515|ref|ZP_02641140.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
8239]
gi|182382182|gb|EDT79661.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
8239]
Length = 257
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 75/141 (53%), Gaps = 13/141 (9%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE------LPLPEDVPQHRVDYK 62
R K ++EG R + +A+K+ + + + F++ KE L + E++ +++
Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTES--FKEKNPDLFLKINENIKLIQMNEA 80
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ P GI+G+ + + S + L ++ D ++DPGNMG+I+R A GA
Sbjct: 81 LLKQLCSTENPQGIVGVINMQNKELKSGE-----LVVLVDKVQDPGNMGTIIRTAHAAGA 135
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+V ++G VDIY++K +R+
Sbjct: 136 AGIVMTKGTVDIYNDKTLRST 156
>gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
Length = 260
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVP--QHRVDYKNIQLW 67
R +G + EG++ L L +L+ +F+++ + L++ P +P + V+
Sbjct: 26 RRTEGRFLAEGRK-LCPELARGAELETLFYTE-NALEKCPELAALPGEHYLVEDHVADKL 83
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
+D+ T G+ G+F P H + + P L + + ++DPGN+G++LR AA G V+
Sbjct: 84 ADVGTHQGVFGVFRTPVHTLEEVRPGGRYLAL--ERVQDPGNVGTLLRSAAAFGFDGVIL 141
Query: 128 SRGCVDIYDNKVIRAA 143
S GC +Y K +RA+
Sbjct: 142 SEGCASVYAPKTLRAS 157
>gi|238927108|ref|ZP_04658868.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
43531]
gi|238885088|gb|EEQ48726.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
43531]
Length = 276
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 10/150 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI-LKELPL------PEDVPQ 56
++S ++ K+ +EG R+ A+++N + ++ + ++ + L ++P
Sbjct: 22 IRSPRRAVKENVFFVEGLRLAEMAVQSNWAILHAVVTEHAMKMERMQLLLTKLSARNIPI 81
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFE-LPAHPIASIDPAS--LPLNIVCDNIRDPGNMGSI 113
V + S+ +P GII + + LP P+ + + LPL + D ++DPGN+G+I
Sbjct: 82 ASVSERLFSACSETDSPQGIILLLQRLPCTPLEEMVQVTEGLPLYLALDRVQDPGNVGTI 141
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A GA V+ RGC D+Y +KV+RAA
Sbjct: 142 LRTADAAGASGVILLRGCADVYGSKVVRAA 171
>gi|386819919|ref|ZP_10107135.1| rRNA methylase [Joostella marina DSM 19592]
gi|386425025|gb|EIJ38855.1| rRNA methylase [Joostella marina DSM 19592]
Length = 242
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 14/143 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R K+G + EG +++ + LK++ KL ++ S+ +I+ ++ +V +
Sbjct: 13 LHQKKYRNKEGLFIAEGVKVINELLKSDFKLHKIYASEENIV-------NIASEKVTLVS 65
Query: 64 ---IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ S L TP + F + + + L +V D++RDPGN+G+I+R+C
Sbjct: 66 EGILKKMSALRTPSPALATF----YTKKTTEIIEDGLTLVLDDVRDPGNLGTIIRMCDWF 121
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G +VCS VD Y+ KVI+A
Sbjct: 122 GISALVCSANTVDCYNPKVIQAT 144
>gi|365959885|ref|YP_004941452.1| tRNA/rRNA methyltransferase [Flavobacterium columnare ATCC 49512]
gi|365736566|gb|AEW85659.1| tRNA/rRNA methyltransferase [Flavobacterium columnare ATCC 49512]
Length = 242
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R++ G + EG +++ + L + +L+ ++ + ++ +LP V+
Sbjct: 13 LHQKKYRKEYGLFLAEGVKVIRELLASKFELEHLYMVE-ELFDDLPAKFKTLVSTVE--- 68
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S L T + +F +P + + L + D++RDPGN+G+I+R+C G
Sbjct: 69 LNRMSALTTANNCLALFRIPKERVLKEEG----LIVALDDVRDPGNLGTIIRLCDWFGVS 124
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q+VC++ VD+Y+ KVI+A
Sbjct: 125 QIVCTKETVDLYNPKVIQAT 144
>gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
M21/2]
gi|158443727|gb|EDP20732.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
M21/2]
Length = 260
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVP--QHRVDYKNIQLW 67
R +G + EG++ L L +L+ +F+++ + L++ P +P + V+
Sbjct: 26 RRTEGRFLAEGRK-LCPELARGAELETLFYTE-NALEKCPELAALPGEHYLVEDHVADKL 83
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
+D+ T G+ G+F P H + + P L + + ++DPGN+G++LR AA G V+
Sbjct: 84 ADVGTHQGVFGVFRTPVHTLEEVRPGGRYLAL--ERVQDPGNVGTLLRSAAAFGFDGVIL 141
Query: 128 SRGCVDIYDNKVIRAA 143
S GC +Y K +RA+
Sbjct: 142 SEGCASVYAPKTLRAS 157
>gi|296164543|ref|ZP_06847114.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900143|gb|EFG79578.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 265
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL--PEDVPQHRVDYKNIQLW 67
R + G + EG L++A A ++ VF ++ + L + P H V + +
Sbjct: 23 RRRAGRFLAEGAN-LVEAAAARGLVRDVFVTEAAERRYAALLGAQRCPVHLVSERAAKAL 81
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + ++PA +A + S L V I +PGN G+++R+ AA+GA V+
Sbjct: 82 SDTVTPAGLVAVCDMPATQLADVLAGSPRLIAVAVEIGEPGNAGTVIRLAAAMGAHGVIL 141
Query: 128 SRGCVDIYDNKVIRAA 143
VD Y+ K +RA+
Sbjct: 142 GGHSVDPYNGKCLRAS 157
>gi|393724800|ref|ZP_10344727.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas sp. PAMC 26605]
Length = 267
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ ++ R ++G + EG RIL +A +A +FF++ L L +
Sbjct: 19 LREKRHRREEGLFLAEGLRILTEAREAGRIPDYLFFARDSAAHPLVLALVEAVEAAGGEA 78
Query: 64 IQLWSDLVT-------PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
I+ D+++ P ++G+F A + S+D +S + +V + +RDPGN+G+ILR
Sbjct: 79 IETVPDILSKLSGKDNPQAVVGVFAEFARALDSLDRSSAAIWLVAERMRDPGNLGTILRT 138
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA ++ CVD + + +RA+
Sbjct: 139 GDAVGAGGLILIGECVDPFSVEAVRAS 165
>gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
JGS1721]
gi|422874806|ref|ZP_16921291.1| RNA methyltransferase, TrmH family [Clostridium perfringens F262]
gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
JGS1721]
gi|380304447|gb|EIA16736.1| RNA methyltransferase, TrmH family [Clostridium perfringens F262]
Length = 257
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 75/141 (53%), Gaps = 13/141 (9%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE------LPLPEDVPQHRVDYK 62
R K ++EG R + +A+K+ + + + F++ KE L + E++ +++
Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTES--FKEKNPELFLKINENIKLIQMNEA 80
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ P GI+G+ + + S + L ++ D ++DPGNMG+I+R A GA
Sbjct: 81 LLKQLCSTENPQGIVGVINMQNKELKSGE-----LVVLVDKVQDPGNMGTIIRTAHAAGA 135
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+V ++G VDIY++K +R+
Sbjct: 136 AGIVMTKGTVDIYNDKTLRST 156
>gi|18310871|ref|NP_562805.1| TrmH family RNA methyltransferase [Clostridium perfringens str. 13]
gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
ATCC 3626]
gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
str. F4969]
gi|422346555|ref|ZP_16427469.1| hypothetical protein HMPREF9476_01542 [Clostridium perfringens
WAL-14572]
gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13]
gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
ATCC 3626]
gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
str. F4969]
gi|373226100|gb|EHP48427.1| hypothetical protein HMPREF9476_01542 [Clostridium perfringens
WAL-14572]
Length = 257
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 75/141 (53%), Gaps = 13/141 (9%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE------LPLPEDVPQHRVDYK 62
R K ++EG R + +A+K+ + + + F++ KE L + E++ +++
Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTES--FKEKNPDLFLKINENIKLIQMNEA 80
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ P GI+G+ + + S + L ++ D ++DPGNMG+I+R A GA
Sbjct: 81 LLKQLCSTENPQGIVGVINMQNKELKSGE-----LVVLVDKVQDPGNMGTIIRTAHAAGA 135
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+V ++G VDIY++K +R+
Sbjct: 136 AGIVMTKGTVDIYNDKTLRST 156
>gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
Length = 251
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHR 58
++K RE+ G +LEG ++ +A+K+ L + + WD+ DVP
Sbjct: 20 TKKGREETGCFLLEGFHLVEEAVKSQAPLVELIVDERTTIPPGWDV-------SDVPVVI 72
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V ++ S TP GI I H + + A ++ D ++DPGN+G+++R
Sbjct: 73 VTETVMKAISSTETPQGIAAICRQRPHELTGVKTA-----LLIDAVQDPGNLGTMIRTAD 127
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G V+ GC D+Y+ KVIRA
Sbjct: 128 AAGIDAVILGEGCADLYNPKVIRAT 152
>gi|395767568|ref|ZP_10448101.1| hypothetical protein MCS_01034 [Bartonella doshiae NCTC 12862]
gi|395413931|gb|EJF80384.1| hypothetical protein MCS_01034 [Bartonella doshiae NCTC 12862]
Length = 275
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY-- 61
+ +K R ++G + EG +++IDAL L+ + FS+ I E+ H + +
Sbjct: 26 LSQKKNRNREGLFIAEGLKLVIDALHLGWTLQTLIFSKSKIGN--TATENAAAHTIAHGG 83
Query: 62 ---KNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
K Q + +T P +IG+F+ HP+ +I + + + D +RDPGN+G+I+
Sbjct: 84 FVIKTSQKVLESITRRDNPQTVIGVFKQQWHPLETIKEQAKDVFVALDRVRDPGNLGTII 143
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A+ A+ V+ D + + +RA
Sbjct: 144 RTADAISAKGVILIGETTDPFSPETVRAT 172
>gi|163754275|ref|ZP_02161398.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
gi|161326489|gb|EDP97815.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
Length = 242
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL---KELPLPEDVPQHRVD 60
+ +K R+ G + EGK+++ + L + +L +F ++ ++ L + ++
Sbjct: 13 LHQKKYRKSTGLFVAEGKKVIQEFLNSKFELDSLFSVDANLFANNSKVTLISEAELKKIS 72
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ L TP + +F++ + + + + L + D++RDPGN+G+I+R+C
Sbjct: 73 F--------LKTPNKALALFKIAENAVVNAEG----LIVALDDVRDPGNLGTIIRLCDWF 120
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G Q+VCS VD Y+ KVI+A
Sbjct: 121 GVTQLVCSEATVDCYNPKVIQAT 143
>gi|430819656|ref|ZP_19438304.1| RNA methyltransferase [Enterococcus faecium E0045]
gi|430440344|gb|ELA50606.1| RNA methyltransferase [Enterococcus faecium E0045]
Length = 254
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ + + +
Sbjct: 24 REEKAEYLLEGFHLIEEAALSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLISDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|145589617|ref|YP_001156214.1| tRNA/rRNA methyltransferase SpoU [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145048023|gb|ABP34650.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 274
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 12/150 (8%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ---------WDILKELPLPEDVP 55
K +K R G +LEG L+ + LK++F S+ + L + D
Sbjct: 26 KGQKARLACGQALLEGIH-LVQTWLGDPGLKILFTSEVGLKNSEIAQAVYSHLEICPDTK 84
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIA-SIDPASLPLNIV-CDNIRDPGNMGSI 113
+++D L S+LV P + G+ +LP +A S A+L ++V D ++D GN+GSI
Sbjct: 85 VYQLDSALWDLLSELVNAPHLAGLLDLPKSSLAPSQSIATLAGDVVILDRVQDAGNVGSI 144
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR AA G QV+ GC ++ NKV+RA
Sbjct: 145 LRTAAAAGFTQVLALSGCAHLWSNKVLRAG 174
>gi|387791513|ref|YP_006256578.1| rRNA methylase [Solitalea canadensis DSM 3403]
gi|379654346|gb|AFD07402.1| rRNA methylase [Solitalea canadensis DSM 3403]
Length = 253
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL----PLPEDVPQHRV 59
+ ++K RE+ G ++EG +++ + L+++ K+ +F S + LK + P E H V
Sbjct: 13 LHNKKYREEHGLFIVEGVKMVNELLESSFKVHSIF-STENYLKNITNINPNIEKAAIHEV 71
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDP----ASLPLN--IVCDNIRDPGNMGSI 113
+Q S L TP + F L PI +ID SL + I+ D+++DPGNMG+I
Sbjct: 72 SESELQKISCLHTPNEV---FALVQTPINNIDNQQFNESLTTHWSIMLDDVQDPGNMGTI 128
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+R+ G + ++ S V++Y+ KV+++
Sbjct: 129 IRIADWFGIKTLITSLNSVEVYNPKVVQST 158
>gi|379795507|ref|YP_005325505.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356872497|emb|CCE58836.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 246
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAHQSGIVITQLFAIEPARLDQQIIEYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISQAQQV-----LLIDRVQDPGNLGTLIRTADAAGID 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|423711917|ref|ZP_17686222.1| hypothetical protein MCQ_00786 [Bartonella washoensis Sb944nv]
gi|395412765|gb|EJF79245.1| hypothetical protein MCQ_00786 [Bartonella washoensis Sb944nv]
Length = 277
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV---- 59
+ +K R ++G M EG +++IDAL K++ + FS+ + E+ H V
Sbjct: 26 LSQKKNRNREGIFMAEGLKLIIDALNLGWKIQTLIFSKSKLGN--TAVENTAAHTVASGG 83
Query: 60 -----DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
K ++ + P ++GIF+ P+ I S + + D +RDPGN+G+I+
Sbjct: 84 FVIKASQKIMESLTRRDNPQAVVGIFKQQWQPLEMIKQLSEDVYVALDRVRDPGNLGTII 143
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA+ ++ D + + +RA
Sbjct: 144 RTADAVGAKGIILIGETTDPFSPETVRAT 172
>gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13]
Length = 252
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 16/142 (11%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHRVDY 61
+RE+ G ++EG ++ +ALK + ++ + S+ WD L + L VP
Sbjct: 23 EREQSGTFIIEGFHLVEEALKVDNLVEEIIISEDRSIPSEWD-LNHVELIYAVP------ 75
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
++ S+ TP G+ I +P ++ P L + DN++DPGN+G+++R A G
Sbjct: 76 NVLKEISETETPQGVAAICRIPVQHDLTLQPNQKIL--LLDNVQDPGNVGTMIRTADAAG 133
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
V+ GC D+Y +KVIR+
Sbjct: 134 MDMVILGEGCADLYSSKVIRST 155
>gi|430860478|ref|ZP_19478077.1| RNA methyltransferase [Enterococcus faecium E1573]
gi|430551876|gb|ELA91626.1| RNA methyltransferase [Enterococcus faecium E1573]
Length = 254
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQ 65
RE+K +LEG ++ +A ++ ++K +F +Q +KE L + +++ V + +
Sbjct: 24 REEKAEYLLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVPDEVMT 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SDL TP GI+ + L + L L DN++DPGN+G+++R A G V
Sbjct: 83 AMSDLPTPQGILAVMTLTSKDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGV 138
Query: 126 VCSRGCVDIYDNKVIRA 142
+ +G DIY KV+R+
Sbjct: 139 LLGKGTADIYSTKVLRS 155
>gi|269925979|ref|YP_003322602.1| tRNA/rRNA methyltransferase SpoU [Thermobaculum terrenum ATCC
BAA-798]
gi|269789639|gb|ACZ41780.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
BAA-798]
Length = 266
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--------WDILKELPLPEDVP 55
++SRK RE+ G +EG R + A + + + S W ++ +L + V
Sbjct: 18 LRSRKFREQSGLCYVEGIRQVYSAFEEGFHFEFLIVSSDLLRSEHAWKLVNDL-ISNGVQ 76
Query: 56 QHRVD---YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGS 112
VD +K+I L + P GI G+ H + SIDP + ++DPGN+GS
Sbjct: 77 VIDVDQNIFKSISLRDN---PQGIAGVVRQKWHSLESIDPREGLCLLALKAVQDPGNIGS 133
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
ILR AVG R V+ VD YD +RA A
Sbjct: 134 ILRTADAVGVRYVILLGDSVDPYDPNSVRAGA 165
>gi|188586434|ref|YP_001917979.1| tRNA/rRNA methyltransferase SpoU [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351121|gb|ACB85391.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 269
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFS--------QWDILKELPLPEDVPQHRVDY 61
R++ + LEG ++ +AL + +K V +S D+L E+ + +P + VD
Sbjct: 22 RQEYQLVPLEGSLLIKEALHSGVKFDFVLYSADQEVINANEDLLLEIH-NQQIPAYSVDP 80
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
Q + TP GI+ + + S+ + ++ ++DPGNMG+++R A G
Sbjct: 81 SLFQKTAFTETPQGILAVCTFNEGDLESLTSEKKDI-LILYQVQDPGNMGTLIRSADAFG 139
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+ VVCS+GCVD ++KV+R++
Sbjct: 140 FQGVVCSKGCVDPTNDKVVRSS 161
>gi|169824566|ref|YP_001692177.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
gi|167831371|dbj|BAG08287.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
Length = 256
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R+K ++EG ++ +A+K+NL +K V + E L E V D K
Sbjct: 32 KKYRQKYNEFVIEGYKLYQEAIKSNLNIKQVIIREG----ENFLDECVY---FDSKTFNS 84
Query: 67 WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
S++ P GII + D + +NI DPGN+G+I+R A G ++V
Sbjct: 85 LSEMNNPEGIICVVSFIEQKDVKSDQI-----LFLENINDPGNLGTIIRSAEAFGYNKIV 139
Query: 127 CSRGCVDIYDNKVIRAA 143
S DIY++K IR+A
Sbjct: 140 LSNNSCDIYNSKTIRSA 156
>gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
gi|153794471|gb|EDN76891.1| putative RNA methyltransferase, TrmH family, group 3 [Ruminococcus
gnavus ATCC 29149]
Length = 275
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD TP G++ + + + + ++P ++ DN++DPGN+G+I R A G ++
Sbjct: 98 SDTKTPQGVLAVVHQMEYTLGQMTEGAIPHLMILDNLQDPGNLGTIFRTAEAAGVTGIIM 157
Query: 128 SRGCVDIYDNKVIRAA 143
SR CVDIY+ K IR+
Sbjct: 158 SRDCVDIYNPKTIRST 173
>gi|418644672|ref|ZP_13206812.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-55]
gi|375025075|gb|EHS18485.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-55]
Length = 246
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPVRLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPHYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|337292656|emb|CCB90663.1| uncharacterized tRNA/rRNA methyltransferase YsgA [Waddlia
chondrophila 2032/99]
Length = 243
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 9/139 (6%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
K RK R+++G +++EGK+++ + N++L + E LPE + V + I
Sbjct: 20 KERKMRQQEGSVVIEGKKLV----RENVRLVRTLLTTSPS-TEFSLPESAEVYAVSPEMI 74
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
Q S + +P G++ ++P+ + PA L +V +N+ DPGN+G+++R A G
Sbjct: 75 QKISGVKSPEGVLAEVKMPSFKL----PARLQRLLVLENLNDPGNLGTLIRTSLAFGWDG 130
Query: 125 VVCSRGCVDIYDNKVIRAA 143
V C D +++K IRA+
Sbjct: 131 VFLLGNCCDPFNDKAIRAS 149
>gi|225872630|ref|YP_002754087.1| TrmH family RNA methyltransferase [Acidobacterium capsulatum ATCC
51196]
gi|225791883|gb|ACO31973.1| RNA methyltransferase, TrmH family protein [Acidobacterium
capsulatum ATCC 51196]
Length = 283
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 26/157 (16%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFF--SQWDILKE---------------- 47
S + ++G++ LEG+ +L +AL++ L VF QW+ L+
Sbjct: 30 SHPGKGERGYIALEGELLLAEALRSGLAPAAVFIRSGQWEALERVAAKAPSRAALDTAEI 89
Query: 48 LPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDP 107
L LP D+ VD ++ Q + L+ PP PAH A L +V +++DP
Sbjct: 90 LELPADIFSSAVDTESPQGIAALLAPPRFDWDDLFPAHAPA--------LLLVTASLQDP 141
Query: 108 GNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
GN+G+++R A GA ++ G V++++ KV+RA+A
Sbjct: 142 GNLGTLIRSAEAFGASGILTLPGTVNLWNAKVVRASA 178
>gi|295132801|ref|YP_003583477.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
gi|294980816|gb|ADF51281.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
SM-A87]
Length = 215
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 17 MLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDYKNIQLWSDLVTPP 74
M EG +++ + L ++ +L +F S+ +DI K+ + V D K I L TP
Sbjct: 1 MAEGIKVIRELLNSDFRLDKLFASETIFDISKD----QFVLTEERDLKKISF---LKTPQ 53
Query: 75 GIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDI 134
+G+F++P + ++ L + D +RDPGN+G+I+R+C G + +VCS VD
Sbjct: 54 TALGLFKIPQQNLGVLED----LTVALDGVRDPGNLGTIIRLCDWFGVKNLVCSTDTVDC 109
Query: 135 YDNKVIRAA 143
++ KVI++
Sbjct: 110 FNPKVIQST 118
>gi|383809924|ref|ZP_09965436.1| RNA methyltransferase, TrmH family [Rothia aeria F0474]
gi|383447244|gb|EID50229.1| RNA methyltransferase, TrmH family [Rothia aeria F0474]
Length = 302
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 28/165 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLK---LKMVFFSQ---------WDILKEL--- 48
+++R R K+G ++EG + + +AL A+L+ L V+ ++ ++L+E+
Sbjct: 17 LRTRAGR-KRGQFLVEGPQAVREALHAHLRRPVLDAVYVTEEAFDRHPDIAELLEEVHGT 75
Query: 49 PLPED---VPQHRVDYKNIQLWSDLVTPPGIIGI-FELPAHP-----IASIDPASLPLNI 99
P PE V V + +Q +D +TP GII + F+L A +++P L
Sbjct: 76 PTPEQGRRVFMRVVTDEVLQAMADALTPQGIIAVSFKLDALAGRLWGEGALNPR---LIA 132
Query: 100 VCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
V ++DPGN G+ILRV A GA VV S+G VD+Y+ K +RA A
Sbjct: 133 VLSRVQDPGNAGTILRVADAAGADLVVASKGTVDLYNPKTVRATA 177
>gi|311113269|ref|YP_003984491.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
gi|310944763|gb|ADP41057.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
Length = 314
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 27/165 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLK---LKMVFFSQW------DILKEL------ 48
+ +R+ R KK M+EG + + +ALKA+L+ L V+ ++ DI + L
Sbjct: 27 LSTRRGRAKKKQFMVEGPQAVREALKAHLQSPVLDAVYVTESAYERHPDIAELLEQAHGT 86
Query: 49 PLPED---VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIA------SIDPASLPLNI 99
P PE+ V V + + +D VTP GII I + + +++P L
Sbjct: 87 PTPEEGRRVFMRVVTDEVLAAMADSVTPQGIIAISFMVDTSFSVLWGENALNP---KLIA 143
Query: 100 VCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
V I+DPGN G+ILRV A GA V+ ++G VD+Y+ K +R+ A
Sbjct: 144 VLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTA 188
>gi|385781364|ref|YP_005757535.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus 11819-97]
gi|418316579|ref|ZP_12928016.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21340]
gi|418574574|ref|ZP_13138741.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21333]
gi|421150709|ref|ZP_15610363.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443640484|ref|ZP_21124473.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21196]
gi|364522353|gb|AEW65103.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus 11819-97]
gi|365240858|gb|EHM81617.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21340]
gi|371978705|gb|EHO95946.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21333]
gi|394329197|gb|EJE55312.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443405165|gb|ELS63775.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21196]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPVRLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPHYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|261751478|ref|ZP_05995187.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261741231|gb|EEY29157.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
Length = 297
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K E V
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKTVEQVAARTFAKGGLVL 104
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K I + P + G+FE H +A + P + + D +RDPGN+G+++R+
Sbjct: 105 EVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRDPGNLGTVIRIA 164
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D Y + +RA
Sbjct: 165 DAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|27467748|ref|NP_764385.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228]
gi|418609900|ref|ZP_13173034.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU065]
gi|418629003|ref|ZP_13191519.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU127]
gi|420169701|ref|ZP_14676279.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM070]
gi|420210600|ref|ZP_14716023.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM003]
gi|27315292|gb|AAO04427.1|AE016746_217 rRNA methylase [Staphylococcus epidermidis ATCC 12228]
gi|374406236|gb|EHQ77139.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU065]
gi|374834997|gb|EHR98628.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU127]
gi|394243001|gb|EJD88375.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM070]
gi|394276051|gb|EJE20407.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM003]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ +++ +F D + + ++++ K
Sbjct: 18 LKKKRERDKTGLALVEGIHLIEEAYQSQIEVIQLFIVDTDRMSSSIIDYAKEVYQINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I + P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEALSGTVTPQGFFAIIKKPTY-----DKTLAKQVLLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D + +KVIRA+
Sbjct: 133 LIVMEKGTADPFQDKVIRAS 152
>gi|300744017|ref|ZP_07073037.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
gi|300380378|gb|EFJ76941.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
Length = 302
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 27/165 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLK---LKMVFFSQW------DILKEL------ 48
+ +R+ R KK M+EG + + +ALKA+L+ L V+ ++ DI + L
Sbjct: 15 LSTRRGRTKKKQFMVEGPQAVREALKAHLQSPVLDAVYVTESAYERHPDIAELLEQAHGT 74
Query: 49 PLPED---VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIA------SIDPASLPLNI 99
P PE+ V V + + +D VTP GII I + + +++P L
Sbjct: 75 PTPEEGRRVFMRVVTDEVLAAMADSVTPQGIIAISFMVDTSFSVLWGENALNP---KLIA 131
Query: 100 VCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
V I+DPGN G+ILRV A GA V+ ++G VD+Y+ K +R+ A
Sbjct: 132 VLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTA 176
>gi|297622073|ref|YP_003710210.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
gi|297377374|gb|ADI39204.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
86-1044]
Length = 243
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 9/139 (6%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
K RK R+++G +++EGK+++ + N++L + E LPE + V + I
Sbjct: 20 KERKMRQQEGSVVIEGKKLV----RENVRLVRTLLTTSPS-TEFSLPESAEVYAVSPEMI 74
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
Q S + +P G++ ++P+ + PA L +V +N+ DPGN+G+++R A G
Sbjct: 75 QKISGVKSPEGVLAEVKMPSFKL----PARLQRLLVLENLNDPGNLGTLIRTSLAFGWDG 130
Query: 125 VVCSRGCVDIYDNKVIRAA 143
V C D +++K IRA+
Sbjct: 131 VFLLGNCCDPFNDKAIRAS 149
>gi|418616528|ref|ZP_13179452.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU120]
gi|420182824|ref|ZP_14688957.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM049]
gi|420194107|ref|ZP_14699936.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM021]
gi|420214365|ref|ZP_14719644.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05005]
gi|420217157|ref|ZP_14722341.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05001]
gi|374820606|gb|EHR84682.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU120]
gi|394249287|gb|EJD94500.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM049]
gi|394266805|gb|EJE11430.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM021]
gi|394283730|gb|EJE27895.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05005]
gi|394290513|gb|EJE34368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05001]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ +++ +F D + + ++++ K
Sbjct: 18 LKKKRERDKTGLALIEGIHLIEEAYQSQIEVIQLFIVDSDRMSSSIIDYAKEVYQINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I + P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEALSGTVTPQGFFAIIKKPTY-----DKTLAKQVLLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D + +KVIRA+
Sbjct: 133 LIVMEKGTADPFQDKVIRAS 152
>gi|57866640|ref|YP_188303.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
gi|242242436|ref|ZP_04796881.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
W23144]
gi|418612943|ref|ZP_13175964.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU117]
gi|418626717|ref|ZP_13189313.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU126]
gi|418634603|ref|ZP_13196996.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU129]
gi|420175077|ref|ZP_14681522.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM061]
gi|420189670|ref|ZP_14695638.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM037]
gi|420192820|ref|ZP_14698677.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM023]
gi|420204077|ref|ZP_14709637.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM015]
gi|420234312|ref|ZP_14738877.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH051475]
gi|57637298|gb|AAW54086.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
RP62A]
gi|242234143|gb|EES36455.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
W23144]
gi|374817253|gb|EHR81438.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU117]
gi|374831261|gb|EHR95003.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU126]
gi|374836826|gb|EHS00403.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU129]
gi|394244363|gb|EJD89708.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM061]
gi|394260636|gb|EJE05445.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM023]
gi|394261005|gb|EJE05807.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM037]
gi|394274091|gb|EJE18516.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM015]
gi|394304366|gb|EJE47771.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH051475]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ +++ +F D + + ++++ K
Sbjct: 18 LKKKRERDKTGLALIEGIHLIEEAYQSQIEVIQLFIVDPDRMSSSIVDYAKEVYQINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I + P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEALSGTVTPQGFFAIIKKPTY-----DKTQAKQVLLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D + +KVIRA+
Sbjct: 133 LIVMEKGTADPFQDKVIRAS 152
>gi|414160423|ref|ZP_11416691.1| hypothetical protein HMPREF9310_01065 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878321|gb|EKS26206.1| hypothetical protein HMPREF9310_01065 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 248
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWS 68
+R+K G L++EG ++ +A+++ L +K +F + + + +++K + S
Sbjct: 23 ERDKTGLLLVEGTHLIEEAVQSQLSVKQLFVVEPERFDAQLIEAAEEAFHINFKVAESLS 82
Query: 69 DLVTPPGIIGIFELP--AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
VTP GI + E P A IA ++ D I+DPGN+G+++R A +V
Sbjct: 83 GTVTPQGIFAVIEKPEVASRIAEAKQV-----LLLDRIQDPGNLGTLIRTADAAALDLIV 137
Query: 127 CSRGCVDIYDNKVIRAA 143
+ G D Y +KV+R++
Sbjct: 138 LAPGTADAYQDKVLRSS 154
>gi|409100077|ref|ZP_11220101.1| tRNA/rRNA methyltransferase SpoU [Pedobacter agri PB92]
Length = 248
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS--QWDILKELPLPEDVPQHRVDY 61
+ +K R++ G ++EG + + + ++N + +F++ Q ++L +LP ++ +
Sbjct: 13 LHQKKYRKEHGLFLVEGIKSIKEFFQSNYSIHSIFYNNEQSNLLPKLPANINL----FEV 68
Query: 62 KNIQLW--SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
N++L S L TP G + + LP + +V D ++DPGN+G+I+R
Sbjct: 69 NNVELGKISTLQTPQGFLAVVHLPKTEKINESALKNQFTLVLDGVQDPGNLGTIIRTADW 128
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G ++++CS V+ ++ K ++A
Sbjct: 129 FGFKKIICSEDTVEAFNPKTVQAT 152
>gi|251810585|ref|ZP_04825058.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876415|ref|ZP_06285282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
SK135]
gi|293366881|ref|ZP_06613557.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417645965|ref|ZP_12295850.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU144]
gi|417656577|ref|ZP_12306260.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU028]
gi|417660132|ref|ZP_12309723.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU045]
gi|417909857|ref|ZP_12553590.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU037]
gi|417913373|ref|ZP_12557040.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU109]
gi|418603457|ref|ZP_13166842.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU041]
gi|418624900|ref|ZP_13187560.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU125]
gi|418663786|ref|ZP_13225294.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU081]
gi|419768607|ref|ZP_14294723.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-250]
gi|419772632|ref|ZP_14298663.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-K]
gi|420172844|ref|ZP_14679342.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM067]
gi|420202131|ref|ZP_14707726.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM018]
gi|420206526|ref|ZP_14712036.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM008]
gi|420219534|ref|ZP_14724550.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH04008]
gi|420222055|ref|ZP_14726980.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH08001]
gi|420224917|ref|ZP_14729755.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH06004]
gi|420226946|ref|ZP_14731719.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05003]
gi|420229266|ref|ZP_14733972.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH04003]
gi|420231630|ref|ZP_14736275.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH051668]
gi|421607345|ref|ZP_16048591.1| rRNA methylase [Staphylococcus epidermidis AU12-03]
gi|251805745|gb|EES58402.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295440|gb|EFA87967.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
SK135]
gi|291319182|gb|EFE59552.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329729977|gb|EGG66368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU144]
gi|329734456|gb|EGG70769.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU045]
gi|329736238|gb|EGG72510.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU028]
gi|341652466|gb|EGS76254.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU037]
gi|341655655|gb|EGS79379.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU109]
gi|374407626|gb|EHQ78479.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU041]
gi|374411205|gb|EHQ81923.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU081]
gi|374826165|gb|EHR90073.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU125]
gi|383359259|gb|EID36689.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-K]
gi|383359433|gb|EID36856.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-250]
gi|394241521|gb|EJD86935.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM067]
gi|394270104|gb|EJE14627.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM018]
gi|394278365|gb|EJE22682.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM008]
gi|394288959|gb|EJE32856.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH04008]
gi|394290086|gb|EJE33956.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH08001]
gi|394294320|gb|EJE38006.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH06004]
gi|394297447|gb|EJE41044.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05003]
gi|394299032|gb|EJE42583.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH04003]
gi|394302172|gb|EJE45620.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH051668]
gi|406657137|gb|EKC83530.1| rRNA methylase [Staphylococcus epidermidis AU12-03]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ +++ +F D + + ++++ K
Sbjct: 18 LKKKRERDKTGLALVEGIHLIEEAYQSQIEVIQLFIVDTDRMSSSIIDYAKEVYQINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I + P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEALSGTVTPQGFFAIIKKPTY-----DKTLAKQVLLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D + +KVIRA+
Sbjct: 133 LIVMEKGTADPFQDKVIRAS 152
>gi|383648793|ref|ZP_09959199.1| tRNA/rRNA methyltransferase [Sphingomonas elodea ATCC 31461]
Length = 267
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M ++ ++ R ++G + EG RIL +A +A +F++ L +
Sbjct: 16 MRNLRDKRHRREEGLFLAEGLRILTEAREAGRIPDYLFYTAETARHPLVVALVTATEARG 75
Query: 61 YKNIQLWSDLVT-------PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
+ I+ +D+++ P ++G++ A +A ID ++ P+ +V + +RDPGN+G+I
Sbjct: 76 GEAIETNADILSKLSGKDNPGAVVGVYPEFALDLAQIDRSTAPIWLVAERLRDPGNLGTI 135
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR AVGA ++ CVD + + +RA+
Sbjct: 136 LRTGDAVGAGGLILLDDCVDPFSVEAVRAS 165
>gi|384044683|ref|YP_005492700.1| tRNA/rRNA methyltransferase SpoU [Bacillus megaterium WSH-002]
gi|345442374|gb|AEN87391.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus megaterium WSH-002]
Length = 254
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 19/148 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF-------SQWDILKELPLPEDVPQ 56
+ ++K R+K+G M+EG ++ +A+K +K + +QWDI + +
Sbjct: 20 LHNKKDRDKQGLFMVEGFHLVEEAIKNKDCVKELIIRESIEVPAQWDI-------DGIEI 72
Query: 57 HRVDYKNIQLWSDLVTPPGIIGI-FELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V+ I+L SD TP GII + F+ I L L D ++DPGN+G+I+R
Sbjct: 73 TVVNEAIIKLLSDTETPQGIIAVCFQTKHAEIIHTAQKVLLL----DAVQDPGNLGTIIR 128
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++ G VD+Y+ KV+R+
Sbjct: 129 TADAAGVDAIIVGEGSVDVYNPKVVRST 156
>gi|416124439|ref|ZP_11595435.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus epidermidis FRI909]
gi|418329203|ref|ZP_12940282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
14.1.R1.SE]
gi|418614017|ref|ZP_13177007.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU118]
gi|418631987|ref|ZP_13194431.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU128]
gi|420177453|ref|ZP_14683789.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM057]
gi|420180247|ref|ZP_14686502.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM053]
gi|420198942|ref|ZP_14704626.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM031]
gi|319401549|gb|EFV89759.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus epidermidis FRI909]
gi|365230865|gb|EHM71940.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
14.1.R1.SE]
gi|374821886|gb|EHR85927.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU118]
gi|374833656|gb|EHR97331.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU128]
gi|394247837|gb|EJD93079.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM057]
gi|394251286|gb|EJD96385.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM053]
gi|394272628|gb|EJE17078.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM031]
Length = 246
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ +++ +F D + + ++++ K
Sbjct: 18 LKKKRERDKTGLALIEGIHLIEEAYQSQIEVIQLFIVDPDRMSSSIVDYAKEVYQINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I + P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEALSGTVTPQGFFAIIKKPTY-----DKTQAKQVLLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D + +KVIRA+
Sbjct: 133 LIVMEKGTADPFQDKVIRAS 152
>gi|373857563|ref|ZP_09600304.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus sp. 1NLA3E]
gi|372452695|gb|EHP26165.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus sp. 1NLA3E]
Length = 253
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Query: 6 SRKQREKKGWLMLEGKRILIDALK-ANLKLKMVFFSQWDILKELPLP---EDVPQHRVDY 61
++K+R+K G ++EG ++ +ALK ++ L+++ Q ELP +P V
Sbjct: 20 TKKERDKTGTFLIEGFHLVEEALKKEDVVLELIVDEQV----ELPAKWNYGSIPLTLVTV 75
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
+ I+ SD TP G+I I I + ++ D+++DPGNMG+++R A G
Sbjct: 76 EVIKSLSDTETPQGVIAICRQEQEKNTDIIKKTY---LLIDSVQDPGNMGTMIRTADAAG 132
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
V+ G VDIY+ KV+R+A
Sbjct: 133 IDAVIVGNGSVDIYNPKVLRSA 154
>gi|373464463|ref|ZP_09556002.1| RNA methyltransferase, TrmH family [Lactobacillus kisonensis F0435]
gi|371762665|gb|EHO51194.1| RNA methyltransferase, TrmH family [Lactobacillus kisonensis F0435]
Length = 255
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE-DVPQHRVDYK 62
++S+K R K G ++EG I+ +A+ + +L V + D L EL + P + + +
Sbjct: 18 LQSKKGRTKAGEYVIEGWHIVGEAINHHKQLLTVMVTNEDFLDELDFDSANTPVYLITPE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNI-----VCDNIRDPGNMGSILRVC 117
S TP G+ + + + LP N+ + DNI+DPGN+G+++R
Sbjct: 78 IANHISSTETPQGVFAVLKTEDYH------EKLPDNLKGSWLLLDNIQDPGNIGTMVRTA 131
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A G +V +G DIY+ KV+RA
Sbjct: 132 DAAGISGIVFGQGTADIYNPKVVRA 156
>gi|336391293|ref|ZP_08572692.1| putative tRNA/rRNA methyltransferase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 251
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE++ +LEG ++ +AL A + M+ ++ D LP DVP + + +
Sbjct: 18 LTRKKNREEQQRYLLEGVHLVREALNAQQPITMILATE-DFQVAAWLPNDVPTYWLKPEV 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S VT GI + LP + S ++ D ++DPGN+G+++R A G
Sbjct: 77 AHTLSATVTTQGIFAVLPLPEAKLPQTFTGSW---LLLDGVQDPGNIGTMVRTADAAGLT 133
Query: 124 QVVCSRGCVDIYDNKVIRA 142
VV G D++ KV+R+
Sbjct: 134 GVVLGEGSADLFSAKVLRS 152
>gi|418411576|ref|ZP_12984843.1| hypothetical protein HMPREF9281_00447 [Staphylococcus epidermidis
BVS058A4]
gi|420163502|ref|ZP_14670249.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM095]
gi|420167528|ref|ZP_14674181.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM087]
gi|394235191|gb|EJD80765.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM095]
gi|394238154|gb|EJD83637.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM087]
gi|410892302|gb|EKS40096.1| hypothetical protein HMPREF9281_00447 [Staphylococcus epidermidis
BVS058A4]
Length = 246
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 74/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ +++ +F D + + ++++ K
Sbjct: 18 LKKKRERDKTGLALIEGIHLIEEAYQSQIEVIQLFIVDPDRMSSSIIDYAKEVYQINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S VTP G I + P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEVLSGTVTPQGFFAIIKKPTY-----DKTLAKQVLLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D + +KVIRA+
Sbjct: 133 LIVMEKGTADPFQDKVIRAS 152
>gi|320162047|ref|YP_004175272.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
gi|319995901|dbj|BAJ64672.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
Length = 265
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 9/135 (6%)
Query: 14 GWLMLEGKRILIDALKANLKLKMVFFS-QWDILKELPLP----EDVPQHRVDYKNIQLWS 68
GW + EG R++ + ++A + M +S + LP + V ++ S
Sbjct: 31 GWFVAEGVRLVEEGVQAGWQAVMALYSADLSARGQALLPALHAQGAEVFEVPASLLKQIS 90
Query: 69 DLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCS 128
D TP GI+ +F A + S+ P L ++ DN+RDPGN+G++LR AA GA+ V +
Sbjct: 91 DTETPQGILTVF---ARRVYSL-PEPLDFVVIADNLRDPGNLGTLLRSAAAAGAQTVWLT 146
Query: 129 RGCVDIYDNKVIRAA 143
G VD + KV+RA
Sbjct: 147 PGTVDAFSPKVLRAG 161
>gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
metalliredigens QYMF]
Length = 272
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL--------PLPEDVPQHR 58
RK R K +EG RI+ + + + + D + ++ L E P H+
Sbjct: 24 RKNRIKHQQFTIEGLRIVEECFLHGGPIDHILY--CDHIHQVQGGPHLLEKLKEKYPCHQ 81
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASID--PASLPLNIVCDNIRDPGNMGSILRV 116
+D TP GII + E+ H + S+D P +V D I+DPGN+G+I+R
Sbjct: 82 TMDSLFLKIADTETPQGIIAVVEMKNHQLESLDLEKKENPFIVVLDEIQDPGNLGTIIRT 141
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
++ ++GCVD Y++K IRA
Sbjct: 142 AEGAKTDAIILTKGCVDPYNSKSIRAT 168
>gi|149187261|ref|ZP_01865559.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
gi|148838797|gb|EDL55736.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
Length = 246
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G ++EG++ +++ L+ ++ +K VF + + + V +
Sbjct: 13 LSQKKQRKAHGLFLVEGEKNVLELLETSMVIKHVFATSEFLASNREALQRVECIEASLEE 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ + + +P I PA+ + I D + DPGN+G+I+R+ G +
Sbjct: 73 LTKASSLVSNNAAVAVVAIPQTEI----PAAKGMMIALDGVSDPGNLGTIIRIADWYGIK 128
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V S C D Y+ K IRA
Sbjct: 129 HIVASTDCADPYNPKTIRAT 148
>gi|330719322|ref|ZP_08313922.1| rRNA methylase [Leuconostoc fallax KCTC 3537]
Length = 257
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ ++K R++ +L+G ++ +A+K K V ++ + + LP +P VP + +
Sbjct: 18 LATKKGRQENRTYLLDGWHLVEEAIKVKAKFHAVMATETQMAEHLPDVPHGVPAFEISEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + +P GI LP + DP + ++ DNI+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNSPQGIFAEISLPEK---TFDPKYVHDGAWLLLDNIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D Y KV+RA
Sbjct: 135 GFKGVVLGAGTADAYSPKVVRA 156
>gi|315444459|ref|YP_004077338.1| rRNA methylase [Mycobacterium gilvum Spyr1]
gi|315262762|gb|ADT99503.1| rRNA methylase [Mycobacterium gilvum Spyr1]
Length = 249
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Query: 2 VYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY 61
V + R + + EG ++ AL+ L + VF ++ + PL P H V
Sbjct: 5 VKLHRHTGRRRAARFLAEGPNLVEAALRRGL-VSEVFATESAADRFGPLLAGAPVHLVTE 63
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
K + SD VTP G++ + LP +A + L V I +PGN G+++RV A+G
Sbjct: 64 KAAKALSDTVTPVGLVAVCTLPEVDLAEVLTGEPTLVAVPVGISEPGNAGTVIRVADAMG 123
Query: 122 ARQVVCSRGCVDIYDNKVIRAAA 144
A VV + VD Y+ K +RA+A
Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASA 146
>gi|239830999|ref|ZP_04679328.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
3301]
gi|444309184|ref|ZP_21144824.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum intermedium M86]
gi|239823266|gb|EEQ94834.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
3301]
gi|443487575|gb|ELT50337.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum intermedium M86]
Length = 293
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K + E V
Sbjct: 41 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKMVEQVAARTFAKGGLVL 98
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K + + P ++G+FE P+AS+ P + I D +RDPGN+G+++R
Sbjct: 99 EVTEKIMAAITRRDNPQMVVGVFEQQYRPLASLKPKGNDVYIALDRVRDPGNLGTVIRTA 158
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AV A+ V+ D Y + +RA
Sbjct: 159 DAVSAKGVILIGDTTDPYSLETVRAT 184
>gi|294056009|ref|YP_003549667.1| tRNA/rRNA methyltransferase SpoU [Coraliomargarita akajimensis DSM
45221]
gi|293615342|gb|ADE55497.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
DSM 45221]
Length = 269
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 8/151 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF--------SQWDILKELPLPE 52
+V ++ RK R+++ ++EG R L A+ + +++ ++F + + +L
Sbjct: 17 LVKLRERKHRDRQERFLVEGLRELEHAIGSGFEIETIYFCPELFPSAAHQATIDQLRRDG 76
Query: 53 DVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGS 112
+VP R+ + + P GI+GI + AH + + PL +V + I PGN+G+
Sbjct: 77 EVPLTRMSEEAFSKAAYREGPDGIVGIGKQQAHSLHELHLPKQPLLLVLEGIEKPGNLGA 136
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
ILR GA ++ + +D+Y+ IR++
Sbjct: 137 ILRSADGAGADAIILTDCILDLYNPNAIRSS 167
>gi|82750744|ref|YP_416485.1| rRNA methyltransferase [Staphylococcus aureus RF122]
gi|82656275|emb|CAI80689.1| rRNA methyltransferase [Staphylococcus aureus RF122]
Length = 246
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKIGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|386728816|ref|YP_006195199.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
71193]
gi|387602409|ref|YP_005733930.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus ST398]
gi|404478474|ref|YP_006709904.1| SpoU rRNA methylase family protein [Staphylococcus aureus
08BA02176]
gi|418309762|ref|ZP_12921313.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21331]
gi|418978621|ref|ZP_13526421.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
DR10]
gi|283470347|emb|CAQ49558.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus ST398]
gi|365237885|gb|EHM78724.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21331]
gi|379993445|gb|EIA14891.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
DR10]
gi|384230109|gb|AFH69356.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
71193]
gi|404439963|gb|AFR73156.1| SpoU rRNA Methylase family protein [Staphylococcus aureus
08BA02176]
Length = 246
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A + + + +F + L + + ++ K
Sbjct: 18 LKKKRERDKTGLALIEGVHLIEEAYQRGIVITQLFAIEPARLDQQIIAYAQEVFEINMKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I E P + I+ ++ D ++DPGN+G+++R A G
Sbjct: 78 AESLSGTVTPQGFFAIIEKPQYDISKAQQV-----LLIDRVQDPGNLGTLIRTADAAGMD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y +KV+RA+
Sbjct: 133 AVIMEKGTTDPYQDKVLRAS 152
>gi|336433921|ref|ZP_08613729.1| hypothetical protein HMPREF0991_02848 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336015082|gb|EGN44910.1| hypothetical protein HMPREF0991_02848 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 235
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD TP G++ + + + + ++P ++ DN++DPGN+G+I R A G ++
Sbjct: 58 SDTKTPQGVLAVVHQMEYTLGQMTEGAIPHLMILDNLQDPGNLGTIFRTAEAAGVTGIIM 117
Query: 128 SRGCVDIYDNKVIRAA 143
SR CVDIY+ K IR+
Sbjct: 118 SRDCVDIYNPKTIRST 133
>gi|326693241|ref|ZP_08230246.1| rRNA methylase [Leuconostoc argentinum KCTC 3773]
Length = 257
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ ++K R + +L+G ++ +A+KA K V ++ + + LP +P VP + +
Sbjct: 18 LATKKGRLENKTYLLDGWHLVEEAIKAKAKFHAVMATEAQMAEHLPDVPHGVPAFEISEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + DP+ + ++ D I+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPDK---TFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D Y KV+RA
Sbjct: 135 GFKGVVLGEGTADAYSPKVVRA 156
>gi|167745546|ref|ZP_02417673.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
gi|167655267|gb|EDR99396.1| RNA methyltransferase, TrmH family [Anaerostipes caccae DSM 14662]
Length = 257
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 5 KSRKQREKKGWLMLEGKRILID---ALKANLKLKMVFFS-QWDILKELPLPEDVPQHRVD 60
KS ++R++ G + EG RI + +A + + F + LK +P E P
Sbjct: 18 KSSRERKRTGLFVAEGLRIFREIPEEQRAKVFVSSDFLKLHGEELKGIPFEEVSP----- 72
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
K + SD TP GI+ + ++ ++ I S ++ +N++DPGN+G+++R
Sbjct: 73 -KVFREISDTETPQGILSLVKMKQSTLSEILKRSGSSILLLENLQDPGNLGTLIRTGEGA 131
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++ SR VDIY+ KVIR+
Sbjct: 132 GVSGIIMSRDTVDIYNPKVIRST 154
>gi|338707009|ref|YP_004661210.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336293813|gb|AEI36920.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 268
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL--PLPEDVPQHRVDY 61
++ +K R ++G + EG RIL +A +A +FF+ L L E V +
Sbjct: 19 LRDKKHRREEGLFLAEGLRILTEAREAGYIPVYIFFAADSAPHPLVKTLIEAVEE--TGG 76
Query: 62 KNIQLWSDLV-------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ I+ D++ P +IG+FE ++ ID P+ +V ++RDPGN+G++L
Sbjct: 77 EAIETSRDILHKLSGKDNPQTVIGVFEAFTQSLSDIDRHQAPIWLVAQSLRDPGNLGTLL 136
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA ++ CVD + + +RA
Sbjct: 137 RTGDAVGAGGLILIDDCVDPFSVEAVRAT 165
>gi|261324264|ref|ZP_05963461.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
gi|261300244|gb|EEY03741.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
Length = 297
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K E V
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKTVEQVATRTFAKGGLVL 104
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K I + P + G+FE H +A + P + + D +RDPGN+G+++R
Sbjct: 105 EVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTA 164
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D Y + +RA
Sbjct: 165 DAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|86605783|ref|YP_474546.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
gi|86554325|gb|ABC99283.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-3-3Ab]
Length = 270
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-----LPEDVPQHRVDYK 62
K R ++G ++EG +L +AL L+ V ++ +D + P LP+ + + V +
Sbjct: 24 KGRREQGAFLVEGSHLLEEALGVGWPLRAVCYT-FDWAERHPRLLASLPKHLRRQAVSLE 82
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S +P G++ + + IAS P +L L +V + ++DPGN+GS++RV AA GA
Sbjct: 83 VMAALSTTESPEGVVAVAV--SRQIASPPPEALRLGLVVETLQDPGNLGSLIRVVAATGA 140
Query: 123 RQVVCSRGCVDIYDNKVIRAAA 144
+ S VD + KV+RA+A
Sbjct: 141 DGLWLSADSVDPENPKVLRASA 162
>gi|373108672|ref|ZP_09522954.1| hypothetical protein HMPREF9712_00547 [Myroides odoratimimus CCUG
10230]
gi|423129657|ref|ZP_17117332.1| hypothetical protein HMPREF9714_00732 [Myroides odoratimimus CCUG
12901]
gi|371646789|gb|EHO12300.1| hypothetical protein HMPREF9712_00547 [Myroides odoratimimus CCUG
10230]
gi|371648242|gb|EHO13733.1| hypothetical protein HMPREF9714_00732 [Myroides odoratimimus CCUG
12901]
Length = 244
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY-- 61
+ +K R++ + EG +++ + +K++L L+ ++ ++ L +VPQ +V
Sbjct: 13 LHQKKYRKEHQLFIAEGVKVVGELVKSSLVLEHIYCTE-------ELKFNVPQSKVSIVS 65
Query: 62 -KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++++ S L T + +F S+D + L + D+IRDPGN+G+I+R+C
Sbjct: 66 KEDLKKMSALSTTSNCLAVFHCTEQE--SVDYSDLI--VALDDIRDPGNLGTIIRLCDWF 121
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + ++C+ VD+Y+ KV++A
Sbjct: 122 GIKHIICTSETVDVYNPKVVQAT 144
>gi|433443916|ref|ZP_20409039.1| RNA 2'-O ribose methyltransferase, SpoU family [Anoxybacillus
flavithermus TNO-09.006]
gi|432001890|gb|ELK22757.1| RNA 2'-O ribose methyltransferase, SpoU family [Anoxybacillus
flavithermus TNO-09.006]
Length = 250
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQ 65
++K R+K G ++EG ++ +A+K+ + ++ + ++ ++ +P V + I+
Sbjct: 20 TKKGRDKTGLFLIEGFHLVEEAVKSGVHIEELIVAEHAVIPASWNISHIPMTIVTDEVIK 79
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SD TP GI + + + I A + D ++DPGN+G+I+R A G V
Sbjct: 80 AISDTETPQGIAAVCKQMHWNVDDIQTA-----LFIDAVQDPGNVGTIIRTADAAGIDAV 134
Query: 126 VCSRGCVDIYDNKVIRAA 143
V G VDIY+ KVIRA
Sbjct: 135 VVGEGSVDIYNAKVIRAT 152
>gi|168206060|ref|ZP_02632065.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
JGS1987]
gi|169343638|ref|ZP_02864637.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
JGS1495]
gi|169298198|gb|EDS80288.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
JGS1495]
gi|170662406|gb|EDT15089.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
JGS1987]
Length = 257
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 75/141 (53%), Gaps = 13/141 (9%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE------LPLPEDVPQHRVDYK 62
R K ++EG R + +A+K+ + + + F++ KE L + E++ +++
Sbjct: 23 HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTES--FKEKNPDLFLKINENIKLIQMNEA 80
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ P GI+G+ + + S + L ++ D ++DPGNMG+I+R A GA
Sbjct: 81 LLKQLCSTENPQGIVGVINMQNKELKSGE-----LVVLVDKVQDPGNMGTIIRSAHAAGA 135
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+V ++G VDIY++K +R+
Sbjct: 136 AGIVMTKGTVDIYNDKTLRST 156
>gi|345867038|ref|ZP_08819056.1| RNA methyltransferase, TrmH family [Bizionia argentinensis JUB59]
gi|344048533|gb|EGV44139.1| RNA methyltransferase, TrmH family [Bizionia argentinensis JUB59]
Length = 239
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 16/143 (11%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +K R+++G + EG + + + L + L L ++ +K L ++ + +D K
Sbjct: 13 LKQKKFRQEQGLFVAEGIKTIQELLNSTLILHQLY-----TVKSFNLDAEL-ETLIDEKE 66
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLP---LNIVCDNIRDPGNMGSILRVCAAV 120
++ S L TP + +F++P D LP + D++RDPGN+G+I+R+C
Sbjct: 67 LKKISFLKTPNQALAVFKIP-------DEKDLPKKGFVLALDDVRDPGNLGTIIRLCDWF 119
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G +VCS VD ++ KVI+A
Sbjct: 120 GISNLVCSEQTVDCFNPKVIQAT 142
>gi|429749134|ref|ZP_19282274.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
332 str. F0381]
gi|429168903|gb|EKY10704.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
332 str. F0381]
Length = 244
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R + ++EGK+ +++ L+A + +++ + D+ +P D P V
Sbjct: 13 LQQKKYRNELQLFVVEGKKSILEFLQAGYEPQLLLGT--DVFSSMP--ADCPVTLVSKDE 68
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L P + +F P H + + L DNI+DPGN+G+I+R+C G
Sbjct: 69 LRKVSGLQNPDEGLAVFRQPKHKGILQEGVIVAL----DNIQDPGNLGTIIRLCDWFGVE 124
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++CS G VD Y+ KV++A+
Sbjct: 125 TLLCSYGTVDCYNPKVVQAS 144
>gi|407972973|ref|ZP_11153886.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor indicus C115]
gi|407431744|gb|EKF44415.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor indicus C115]
Length = 286
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW----DILKELPLPEDVPQHRV 59
+ +K R+++ M EG +++IDA +A ++ + +++ + +++L V
Sbjct: 31 LSMKKFRDREHVFMAEGLKLVIDAFEAGWTVRTLLYAKAGRGNEAVEKLAARTVASGGLV 90
Query: 60 DYKNIQLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
+ ++ S + P ++G+FE P+ +++PA+ + I D +RDPGN+G+ILR
Sbjct: 91 LVVSEKVLSAITRRDNPQMVVGVFEQKTLPLDAVEPAAGDVWIALDRVRDPGNLGTILRT 150
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRA 142
AVGA+ V+ C D + + +RA
Sbjct: 151 ADAVGAKGVILIGDCTDPFSIETVRA 176
>gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 261
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 35/158 (22%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKL-----------KMVFFSQWDILKELPLPE 52
+K RK R K ++EG R++ +A KA L + K+ + + I K++ + E
Sbjct: 18 LKERKNRTKSNKYIIEGFRLVQEAFKAGLNIECLIVTCDGKDKIDSYLREYINKDIKIYE 77
Query: 53 DVPQHRVDYKNIQLWSDLVT---PPGIIGIFELPAHPIASIDPASLPLN----IVCDNIR 105
V L+ ++++ P GI+ I + + +L LN ++CD ++
Sbjct: 78 MVNS---------LFKEIISTEKPQGIVAIVHM--------NEKTLDLNGSFYLLCDKVQ 120
Query: 106 DPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
DPGN+G+I+R AV A ++ ++G VDIY+ K IR+
Sbjct: 121 DPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRST 158
>gi|23501061|ref|NP_697188.1| RNA methyltransferase [Brucella suis 1330]
gi|148559270|ref|YP_001258183.1| RNA methyltransferase [Brucella ovis ATCC 25840]
gi|161618138|ref|YP_001592025.1| tRNA/rRNA methyltransferase SpoU [Brucella canis ATCC 23365]
gi|163842420|ref|YP_001626824.1| tRNA/rRNA methyltransferase SpoU [Brucella suis ATCC 23445]
gi|256368614|ref|YP_003106120.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
gi|260567212|ref|ZP_05837682.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|261756040|ref|ZP_05999749.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|294851549|ref|ZP_06792222.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|376275076|ref|YP_005115515.1| trmH family RNA methyltransferase [Brucella canis HSK A52141]
gi|376279849|ref|YP_005153855.1| RNA methyltransferase [Brucella suis VBI22]
gi|384223843|ref|YP_005615007.1| RNA methyltransferase [Brucella suis 1330]
gi|23346928|gb|AAN29103.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
gi|148370527|gb|ABQ60506.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
gi|161334949|gb|ABX61254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
gi|163673143|gb|ABY37254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
gi|255998772|gb|ACU47171.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
gi|260156730|gb|EEW91810.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|261745793|gb|EEY33719.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|294820138|gb|EFG37137.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|343382023|gb|AEM17515.1| RNA methyltransferase [Brucella suis 1330]
gi|358257448|gb|AEU05183.1| RNA methyltransferase [Brucella suis VBI22]
gi|363403643|gb|AEW13938.1| TrmH family RNA methyltransferase [Brucella canis HSK A52141]
Length = 297
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K E V
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKTVEQVAARTFAKGGLVL 104
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K I + P + G+FE H +A + P + + D +RDPGN+G+++R
Sbjct: 105 EVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTA 164
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D Y + +RA
Sbjct: 165 DAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
YK9]
gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
YK9]
Length = 264
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD----ILKELPLPEDVPQHRVDYK 62
+K R++ G ++EG ++ +AL+ +++ + + L++LP P+ V
Sbjct: 23 KKHRDRSGQFLVEGIHLVKEALECGAQVETIVYDGERGLPLELQQLPALIAFPELLVSAS 82
Query: 63 NIQLWSDLVT---PPGIIGIFELPAHPIASIDPASL----PLNIVCDNIRDPGNMGSILR 115
+ + T PP +F + A P+ ++ +L L +V D +RDPGN+G+I+R
Sbjct: 83 TVVMAKCTGTDSPPP----VFAVVAKPV--VEETALFREQSLVVVLDGVRDPGNVGTIIR 136
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA VV RGCVD+Y+ K +R+
Sbjct: 137 SADAVGADAVVLGRGCVDLYNPKTVRST 164
>gi|340622551|ref|YP_004741003.1| tRNA/rRNA methyltransferase ysgA [Capnocytophaga canimorsus Cc5]
gi|339902817|gb|AEK23896.1| Uncharacterized tRNA/rRNA methyltransferase ysgA [Capnocytophaga
canimorsus Cc5]
Length = 241
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 78/143 (54%), Gaps = 14/143 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR---VD 60
++ +K R G ++EGK+ +++ +K+ + +M+F + E +P+ + V
Sbjct: 13 LQQKKYRLALGMFIVEGKKSILEFIKSGWQSEMIFVTHL-------FSELLPKAKTIVVQ 65
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ +Q +S L P + +F + + + L L + D++RDPGN+G+I+R+C
Sbjct: 66 QETLQKYSLLKNPDEGLAVFRI--QQVTPLQEEGLILAL--DDVRDPGNLGTIIRLCDWF 121
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G +Q+VCS VD ++ KV++A
Sbjct: 122 GVKQLVCSTETVDCFNPKVVQAT 144
>gi|456063579|ref|YP_007502549.1| tRNA/rRNA methyltransferase (SpoU) [beta proteobacterium CB]
gi|455440876|gb|AGG33814.1| tRNA/rRNA methyltransferase (SpoU) [beta proteobacterium CB]
Length = 274
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK-ELPLP-----EDVPQHR 58
K +K R G +LEG L+ A N LK + S+ + E+ E P+ R
Sbjct: 26 KGQKARFACGQALLEGIH-LVQAWVGNPALKTLITSELGLQNPEIAQAVYDHVEIFPETR 84
Query: 59 VDYKNIQLW---SDLVTPPGIIGIFELPA---HPIASIDPASLPLNIVCDNIRDPGNMGS 112
V + LW SDLV P I G+ +LP +P S+ S + I+ D I+D GN+GS
Sbjct: 85 VYQLDKGLWDLLSDLVNAPQIAGLLDLPESALNPQKSVATISGDV-IILDRIQDAGNVGS 143
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
ILR AA G QV+ GC ++ +KV+RA
Sbjct: 144 ILRTAAAAGFTQVIALTGCAHLWSSKVLRAG 174
>gi|260756006|ref|ZP_05868354.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260885026|ref|ZP_05896640.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|261215282|ref|ZP_05929563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|297247542|ref|ZP_06931260.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
gi|260676114|gb|EEX62935.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260874554|gb|EEX81623.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|260916889|gb|EEX83750.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|297174711|gb|EFH34058.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
Length = 297
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K E V
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKTVEQVAARTFAKGGLVL 104
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K I + P + G+FE H +A + P + + D +RDPGN+G+++R
Sbjct: 105 EVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTA 164
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D Y + +RA
Sbjct: 165 DAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|167768153|ref|ZP_02440206.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
gi|167709677|gb|EDS20256.1| RNA methyltransferase, TrmH family [Clostridium sp. SS2/1]
gi|291560179|emb|CBL38979.1| rRNA methylases [butyrate-producing bacterium SSC/2]
Length = 257
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
KS ++R K+ ++EG R+ + + L ++ D E HRV ++++
Sbjct: 18 KSARERRKQELFLVEGIRMFTEIPEEYL---YKVYASEDFYNE---------HRVIFEHM 65
Query: 65 QLW----------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ SD +TP G++ + ++ + + + PL +V +N++DPGN+G+IL
Sbjct: 66 DVELVSPQVMKEISDTMTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDPGNLGTIL 125
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R G V+ S VDIY+ KV R+
Sbjct: 126 RTGEGAGINGVIMSHDTVDIYNPKVTRST 154
>gi|345017983|ref|YP_004820336.1| hypothetical protein Thewi_1652 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033326|gb|AEM79052.1| LOW QUALITY PROTEIN: hypothetical protein Thewi_1652
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 254
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 7/136 (5%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD--YKNIQLW 67
R ++G +EG +++ALK++ +++ + + + ++P + H + +K I
Sbjct: 23 RYEEGLFFVEGTTSVLEALKSDFEIEYIVMGEG-VKIDIPKGDFEIAHTTERIFKKI--- 78
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP ++ I ++P + + + ++ DNI+DPGN+G+I+R A G +
Sbjct: 79 SDTVTPQMVMAIIKIPKYE-ENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFT 137
Query: 128 SRGCVDIYDNKVIRAA 143
CVDI++ KV+RA+
Sbjct: 138 INNCVDIFNPKVLRAS 153
>gi|300856606|ref|YP_003781590.1| rRNA methylase [Clostridium ljungdahlii DSM 13528]
gi|300436721|gb|ADK16488.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
Length = 260
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 12/141 (8%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFS-----QWD--ILKELPLPEDVPQHRVDYK 62
R ++G ++EG R + +AL ++ K+ +F S +W+ +LKE D P + ++
Sbjct: 24 RVQEGKFLIEGFRFVREALYSDFKISSIFLSSDFTDKWEKLLLKE-NFQCDFPVYFMEKG 82
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ + P GI + E ++ + I+ D I+DPGNMG+I+R A GA
Sbjct: 83 VFKAMVNTENPQGIAAVVENRELKASNKEG----FYILADKIQDPGNMGTIIRSAHASGA 138
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
V+ ++G VDIY+ K +R+
Sbjct: 139 LGVIITKGTVDIYNEKTLRST 159
>gi|317499626|ref|ZP_07957888.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316893101|gb|EFV15321.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 261
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
KS ++R K+ ++EG R+ + + L ++ D E HRV ++++
Sbjct: 22 KSARERRKQELFLVEGIRMFTEIPEEYL---YKVYASEDFYNE---------HRVIFEHM 69
Query: 65 QLW----------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ SD +TP G++ + ++ + + + PL +V +N++DPGN+G+IL
Sbjct: 70 DVELVSPQVMKEISDTMTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDPGNLGTIL 129
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R G V+ S VDIY+ KV R+
Sbjct: 130 RTGEGAGINGVIMSHDTVDIYNPKVTRST 158
>gi|429761117|ref|ZP_19293551.1| RNA methyltransferase, TrmH family, group 3 [Anaerostipes hadrus
DSM 3319]
gi|429184632|gb|EKY25641.1| RNA methyltransferase, TrmH family, group 3 [Anaerostipes hadrus
DSM 3319]
Length = 261
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
KS ++R K+ ++EG R+ + + L ++ D E HRV ++++
Sbjct: 22 KSARERRKQELFLVEGIRMFTEIPEEYL---YKVYASEDFYNE---------HRVIFEHM 69
Query: 65 QLW----------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ SD +TP G++ + ++ + + + PL +V +N++DPGN+G+IL
Sbjct: 70 DVELVSPQVMKEISDTMTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDPGNLGTIL 129
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R G V+ S VDIY+ KV R+
Sbjct: 130 RTGEGAGINGVIMSHDTVDIYNPKVTRST 158
>gi|329119707|ref|ZP_08248387.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464156|gb|EGF10461.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 259
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 21/149 (14%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--------WDILKELPLPEDVPQH 57
S K R + +LEG +L L++ + + VF +Q +L LP
Sbjct: 21 SAKYRRQYRQTVLEGAHLLDALLQSGAQPQQVFIAQSRLHTPETQSLLARLPSENTAA-- 78
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN---IVCDNIRDPGNMGSIL 114
V+ + + S L GI+ + E+P + A+ P N +V + I+DPGN+G+IL
Sbjct: 79 -VEDRLLAKASALSDGGGILSLVEIP-------ETAAPPQNGDCVVLERIQDPGNIGTIL 130
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AA G RQ++ GC D++ KV+RAA
Sbjct: 131 RSAAAAGVRQIIAGEGCADLWSPKVLRAA 159
>gi|429221090|ref|YP_007182734.1| rRNA methylase [Deinococcus peraridilitoris DSM 19664]
gi|429131953|gb|AFZ68968.1| rRNA methylase [Deinococcus peraridilitoris DSM 19664]
Length = 263
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 22/155 (14%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPED 53
+ +K R+ RE+ G+ ++EG R L AL+ ++++ V+ + D+L L PE
Sbjct: 15 LARLKDRRDRERDGYFLIEGTRELSRALQGGVQVERVYLCKELLRPEGHDLLLTLSGPEL 74
Query: 54 VPQHRVDYKNIQLWSDLVTPPGIIGI-----FELPAHPIASIDPASLPLNIVCDNIRDPG 108
+ RV + + + + P G++GI ++LPA P S L +V + PG
Sbjct: 75 LTVSRVAFDKLSVREN---PDGLVGIAPLRTWDLPALPQRS-------LVLVLAGLEKPG 124
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
N+G++LR AVG V+ + D+++ VIRA+
Sbjct: 125 NLGALLRTADAVGVDAVIIAGRGADLHNPNVIRAS 159
>gi|346226868|ref|ZP_08848010.1| putative tRNA/rRNA methyltransferase [Anaerophaga thermohalophila
DSM 12881]
Length = 258
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R++ G+ + EG +++ D L A + +++ + ++LK + VD + ++
Sbjct: 16 KKYRDQTGFFVAEGTKLVNDLLDAGINEEIILTTDSNVLKSGN--REYLVDIVDSRELKQ 73
Query: 67 WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
S L TP I+ + + P + S L + D I+DPGN+G+ILR+ G VV
Sbjct: 74 LSFLKTPQKILAVLKKPEFTF-TFGEHSDSLTLCLDGIQDPGNLGTILRLADWFGIPYVV 132
Query: 127 CSRGCVDIYDNKVIRAA 143
CS+ D+++ KV++A+
Sbjct: 133 CSKDTADVFNPKVVQAS 149
>gi|404317046|ref|ZP_10964979.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi CTS-325]
Length = 294
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K + E V
Sbjct: 42 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKMVEQVAARTFAKGGLVL 99
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K + + P ++G+FE P+ ++ P + + I D +RDPGN+G+++R
Sbjct: 100 EVTEKIMAAITRRDNPQMVVGVFEQQYRPLTNLKPKNNDVYIALDRVRDPGNLGTVIRTA 159
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ ++ D Y + +RA
Sbjct: 160 DAVGAKGIILIGDTTDPYSLETVRAT 185
>gi|225851684|ref|YP_002731917.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
gi|256264805|ref|ZP_05467337.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|265994095|ref|ZP_06106652.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|384210521|ref|YP_005599603.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90]
gi|384407624|ref|YP_005596245.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
gi|384444239|ref|YP_005602958.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis NI]
gi|225640049|gb|ACN99962.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis ATCC 23457]
gi|262765076|gb|EEZ10997.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|263095215|gb|EEZ18884.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|326408171|gb|ADZ65236.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
gi|326537884|gb|ADZ86099.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis M5-90]
gi|349742235|gb|AEQ07778.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis NI]
Length = 297
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K E V
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKTVEQVAARTFAKGGLVL 104
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K I + P + G+FE H +A + P + + D +RDPGN+G+++R
Sbjct: 105 EVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRDPGNLGAVIRTA 164
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D Y + +RA
Sbjct: 165 DAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
JW 200]
gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
JW 200]
Length = 254
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R ++G +EG +++ALK++ +++ + + + ++P + H + + + SD
Sbjct: 23 RYEEGLFFVEGTTSVLEALKSDFEIEYIVMGEG-VKIDIPKGDFEIAHTTE-RIFKKLSD 80
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
VTP ++ I ++P + + + ++ DNI+DPGN+G+I+R A G +
Sbjct: 81 TVTPQMVMAIIKIPKYE-ENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTIN 139
Query: 130 GCVDIYDNKVIRAA 143
CVDI++ KV+RA+
Sbjct: 140 NCVDIFNPKVLRAS 153
>gi|17988081|ref|NP_540715.1| 23S rRNA methyltransferase RumA [Brucella melitensis bv. 1 str.
16M]
gi|260563222|ref|ZP_05833708.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|265992352|ref|ZP_06104909.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|17983831|gb|AAL52979.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|260153238|gb|EEW88330.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|263003418|gb|EEZ15711.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
Length = 297
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL+ + ++K + F++ K E V
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSG--KGNKTVEQVAARTFAKGGLVL 104
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K I + P + G+FE H +A + P + + D +RDPGN+G+++R
Sbjct: 105 EVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRDPGNLGAVIRTA 164
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D Y + +RA
Sbjct: 165 DAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|303233677|ref|ZP_07320331.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
gi|302495111|gb|EFL54863.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
Length = 243
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R+K ++EG ++ +A+K+N+ +K V + E L E V D K
Sbjct: 19 KKYRQKYNEFVIEGYKLYQEAIKSNINIKQVIIREG----ENFLDECV---YFDSKTFNS 71
Query: 67 WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
S++ P GII + I D S + + +NI DPGN+G+I+R A G ++V
Sbjct: 72 LSEMNNPEGIICVVSF----IEKKDVKSDQI-LFLENINDPGNLGTIIRSAEAFGYNKIV 126
Query: 127 CSRGCVDIYDNKVIRAA 143
S DIY++K IR+A
Sbjct: 127 LSNNSCDIYNSKTIRSA 143
>gi|427405588|ref|ZP_18895793.1| hypothetical protein HMPREF9161_00153 [Selenomonas sp. F0473]
gi|425708429|gb|EKU71468.1| hypothetical protein HMPREF9161_00153 [Selenomonas sp. F0473]
Length = 273
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQ 56
M++ K+ +K+G +EG R+ A + +++ F++ L E +
Sbjct: 22 MRTAKRAKKEGLFAVEGLRLAEAAADSGWQIRFALFTERGSEGGRAQALIEKLHARETRV 81
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHP-IASIDPASLPLNIVCDNIRDPGNMGSILR 115
+ V ++ ++ TP G++ + E A + + PL + D IRDPGN+G ILR
Sbjct: 82 YLVPDESFAALAETDTPQGVLLVAERSAAARLEGLPHVPRPLYVALDRIRDPGNVGVILR 141
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRA 142
A GA + GC DIY NK++RA
Sbjct: 142 TADAAGASGAILLHGCADIYGNKLVRA 168
>gi|418325057|ref|ZP_12936267.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU071]
gi|365228963|gb|EHM70135.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU071]
Length = 246
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ +++ +F D + + ++++ K
Sbjct: 18 LKKKRERDKTGLALIEGIHLIEEAYQSQIEVIQLFIVDPDRMSSSIIDYAKEVYQINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I + P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEALSGTVTPQGFFAIIKKPTY-----DKTLAKQVLLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D + +KVIRA+
Sbjct: 133 LIVMEKGTADPFQDKVIRAS 152
>gi|392958155|ref|ZP_10323671.1| 23S rRNA methyltransferase [Bacillus macauensis ZFHKF-1]
gi|391875813|gb|EIT84417.1| 23S rRNA methyltransferase [Bacillus macauensis ZFHKF-1]
Length = 254
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 13/145 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD--- 60
+ +RK+REKK ++EG ++ +AL ++ + + + + +P H +D
Sbjct: 18 LYTRKEREKKNQFIIEGPHLVEEALTHSVPIAHLIIDE-----DFVIPHTWNAHELDPWI 72
Query: 61 --YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
K ++L SD P G+I I + A I P L + D ++DPGN+GSI+R
Sbjct: 73 VPKKIMRLLSDTEHPQGVIAICRM-AEDNLEITPHGKYL--MLDGVQDPGNLGSIIRTAD 129
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G V+ +G D+Y++KV+R+
Sbjct: 130 AFGLDGVILGQGTADLYNSKVLRST 154
>gi|417910870|ref|ZP_12554586.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU105]
gi|418622122|ref|ZP_13184878.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU123]
gi|420165304|ref|ZP_14672008.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM088]
gi|420187640|ref|ZP_14693660.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM039]
gi|341655058|gb|EGS78794.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU105]
gi|374827497|gb|EHR91359.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU123]
gi|394236471|gb|EJD82005.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM088]
gi|394256082|gb|EJE01018.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM039]
Length = 246
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ +++ +F D + + ++++ K
Sbjct: 18 LKKKRERDKTGLALIEGIHLIEEAYQSQIEVIQLFIVDPDRMSSSIIDYAKEVYQINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I + P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEALSGTVTPQGFFAIIKKPTY-----DKTLAKQVLLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D + +KVIRA+
Sbjct: 133 LIVMEKGTADPFQDKVIRAS 152
>gi|392552110|ref|ZP_10299247.1| RNA methyltransferase, TrmH family [Pseudoalteromonas spongiae
UST010723-006]
Length = 244
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ + +++G++ +++ L +NL ++ +F +Q K D+ + +
Sbjct: 13 LSQKKQRKLQNLFLVQGEKNVLELLDSNLVIEQLFATQIFCEKHASQLTDLNIITCEEEE 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I I E P +P S ++IV D + DPGN+G+I+RV G
Sbjct: 73 LAKASTLVSNNAAIAIVETPKQS----EPNSQGISIVLDGVADPGNLGTIIRVADWYGIN 128
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+++ S C D Y+ KVI A
Sbjct: 129 ELILSPDCADPYNPKVISAT 148
>gi|418407868|ref|ZP_12981185.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens 5A]
gi|358005854|gb|EHJ98179.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens 5A]
Length = 286
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ +K RE+ G M EG +++IDAL+ ++ + +++ K PL E
Sbjct: 33 LTQKKGREETGTFMAEGLKLVIDALELGWTIRTLVYAK--AAKGKPLVEQAAVKTVASGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIF+ P+ I P I D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIASITRRDNPQMVVGIFDQRWKPLKDIRPEKGETYIALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ C D + + +RA
Sbjct: 151 RTADAAGASGVILVGDCTDPFSLETVRA 178
>gi|395211848|ref|ZP_10399551.1| tRNA/rRNA methyltransferase SpoU [Pontibacter sp. BAB1700]
gi|394457491|gb|EJF11625.1| tRNA/rRNA methyltransferase SpoU [Pontibacter sp. BAB1700]
Length = 250
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP--LPEDVPQHRVDY 61
++ +K R + M+EG + L++ L ++ +++ +F +Q D L+E L + V
Sbjct: 13 LQVKKYRNQHQAFMVEGAKSLLELLNSDFEIQHLFITQ-DFLQEHGNRLSKGTRYELVTE 71
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
+++ + + + + P P L D+IRDPGNMG+I+R+ G
Sbjct: 72 QDLTRAGTFSSNNAGLAVAHMHQLPKLQFHPGDFTL--ALDDIRDPGNMGTIIRIADWYG 129
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+ +VCS C D Y+ K I A
Sbjct: 130 IQTIVCSETCADFYNPKTISAT 151
>gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis
audaxviator MP104C]
gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis
audaxviator MP104C]
Length = 272
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 19/157 (12%)
Query: 3 YMK---SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ-HR 58
Y+K +K R+ + + EG +++ +AL+A +++M+ ++ D+L+ P V +
Sbjct: 13 YLKKFHEKKHRDLENGFLAEGLKVIEEALQAGWEVRMLLYTS-DVLRH---PRGVALLDK 68
Query: 59 VDYKNIQLW----------SDLVTPPGIIGIFELPAHPI-ASIDPASLPLNIVCDNIRDP 107
+LW +D TP G + + P H + + PL +V D ++DP
Sbjct: 69 ARATGTELWECEKQVLAVVTDTKTPQGALALIAKPEHSLDVLLQGRGTPLVVVLDGLQDP 128
Query: 108 GNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
GN+G+I+R A + V+ G VD++ KV+RA+A
Sbjct: 129 GNLGTIIRTADACELQGVITLEGTVDLFHPKVVRASA 165
>gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
Length = 252
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 19/148 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF-------SQWDILKELPLPEDVPQ 56
+ ++K R+K+G M+EG ++ +A+K +K + +QW+I + +
Sbjct: 18 LHNKKDRDKQGLFMVEGFHLVEEAIKNKDCVKELIIRESIEVPAQWNI-------DGIEI 70
Query: 57 HRVDYKNIQLWSDLVTPPGIIGI-FELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V+ I+L SD TP GII + F+ I L L D ++DPGN+G+I+R
Sbjct: 71 TVVNEAIIKLLSDTETPQGIIAVCFQTKHAEIIHTAQKVLLL----DAVQDPGNLGTIIR 126
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++ G VD+Y+ KV+R+
Sbjct: 127 TADAAGVEAIIVGEGSVDVYNPKVVRST 154
>gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601]
gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601]
Length = 252
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 11/144 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+++RK R+K G ++EG ++ +AL + +K V +++ IL + V +
Sbjct: 18 LQTRKGRQKSGQYLVEGFHLVEEALAQDGLVKEVIYTKDTILPFSLTETAFDVYEVTREV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN----IVCDNIRDPGNMGSILRVCAA 119
SD T G+ + E+ ++P+ L L ++ D ++DPGN+G+++R A
Sbjct: 78 SHAISDTKTDQGVFAVVEM-------LEPSILMLFGKRFLLVDAVQDPGNVGTLIRTADA 130
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G VV RG D+Y+ KVIR+A
Sbjct: 131 AGYDAVVLGRGSADLYNPKVIRSA 154
>gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase SpoU [Geobacillus sp. Y4.1MC1]
gi|336234390|ref|YP_004587006.1| tRNA/rRNA methyltransferase SpoU [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
gi|335361245|gb|AEH46925.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
C56-YS93]
Length = 256
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 17/144 (11%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHRV 59
+K+R+K G ++EG ++ +ALK+N+ + + + WDI +P V
Sbjct: 21 KKERDKTGLFLIEGFHLVEEALKSNISIIQLIVKENKAIPATWDI-------SGIPVAIV 73
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
++ SD TP GI + E + A++ ++ D ++DPGN+G+++R A
Sbjct: 74 TEDVMKAISDTETPQGIAAVCEQFLYGDIDWTRANV---LLIDAVQDPGNIGTMIRTADA 130
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V+ +GC D+Y+ KVIRA
Sbjct: 131 AGIDAVILGKGCADLYNPKVIRAT 154
>gi|423719007|ref|ZP_17693189.1| tRNA/rRNA methyltransferase spoU [Geobacillus thermoglucosidans
TNO-09.020]
gi|383367910|gb|EID45185.1| tRNA/rRNA methyltransferase spoU [Geobacillus thermoglucosidans
TNO-09.020]
Length = 256
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 17/144 (11%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHRV 59
+K+R+K G ++EG ++ +ALK+N+ + + + WDI +P V
Sbjct: 21 KKERDKTGLFLIEGFHLVEEALKSNISIIQLIVKENKAIPATWDI-------SGIPVAIV 73
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
++ SD TP GI + E + A++ ++ D ++DPGN+G+++R A
Sbjct: 74 TEDVMKAISDTETPQGIAAVCEQFLYGDIDWTRANV---LLIDAVQDPGNIGTMIRTADA 130
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V+ +GC D+Y+ KVIRA
Sbjct: 131 AGIDAVILGKGCADLYNPKVIRAT 154
>gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 256
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 9/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR---VD 60
+ +K R +K +EGK + +ALK++ ++K V S+ + + DV + R VD
Sbjct: 17 LSEKKYRYEKKLFFVEGKNSVFEALKSSFEIKYVLVSE-----DCDIDLDVEKDRLIFVD 71
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ SD VTP I+ + ++P + + + L I+ D ++DPGN+G+I+R A
Sbjct: 72 KGIFKKISDTVTPQMIMAVVKMPDYNVNDLIKED-GLYIILDEVQDPGNLGTIIRSADAF 130
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
V VD+Y+ K +R+
Sbjct: 131 NVDAVFTINNTVDVYNPKALRST 153
>gi|15608782|ref|NP_216160.1| Possible 23S rRNA methyltransferase TsnR [Mycobacterium
tuberculosis H37Rv]
gi|148661440|ref|YP_001282963.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Ra]
gi|167968402|ref|ZP_02550679.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
tuberculosis H37Ra]
gi|306775831|ref|ZP_07414168.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu001]
gi|306971937|ref|ZP_07484598.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu010]
gi|307079653|ref|ZP_07488823.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu011]
gi|397673500|ref|YP_006515035.1| TrmH family RNA methyltransferase [Mycobacterium tuberculosis
H37Rv]
gi|148505592|gb|ABQ73401.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
tuberculosis H37Ra]
gi|308215746|gb|EFO75145.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu001]
gi|308358624|gb|EFP47475.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu010]
gi|308362550|gb|EFP51401.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu011]
gi|395138405|gb|AFN49564.1| TrmH family RNA methyltransferase [Mycobacterium tuberculosis
H37Rv]
gi|444895153|emb|CCP44409.1| Possible 23S rRNA methyltransferase TsnR [Mycobacterium
tuberculosis H37Rv]
Length = 260
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDYKNIQLW 67
R + G + EG ++ AL L ++ VF ++ + L + H V + +
Sbjct: 21 RRRAGRFLAEGPNLVAAALARGL-VREVFVTEVAARRHELLLAAHEASVHLVTERAAKAL 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + +LPA + + S L V IR+PGN G+++R+ A+GA V+
Sbjct: 80 SDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAAVIL 139
Query: 128 SRGCVDIYDNKVIRAA 143
+ VD Y+ K +RA+
Sbjct: 140 AGRSVDPYNGKCLRAS 155
>gi|372209046|ref|ZP_09496848.1| tRNA/rRNA methyltransferase SpoU [Flavobacteriaceae bacterium S85]
Length = 245
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R K+G ++EG +++ + L ++ +L +F ++ D+ V V
Sbjct: 14 LQQKKYRTKEGLFVVEGIKVVDEFLNSDFQLAYLFCTE-DVKSNYA---KVLTEVVSVLE 69
Query: 64 IQLWSDLVTPPGIIGIFELPAH-PIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S L +P ++ +F++P P D L + D I DPGN+G+I+R+C G
Sbjct: 70 LTKLSSLRSPNKVVAVFKIPQQLPSRQGDD----LKVALDGINDPGNLGTIIRLCDWFGV 125
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
++++CS VD +++KV++A
Sbjct: 126 KELICSSDTVDCFNSKVVQAT 146
>gi|392529793|ref|ZP_10276930.1| putative RNA methylase [Carnobacterium maltaromaticum ATCC 35586]
Length = 254
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K RE+ G ++EG ++ +A+K + + S+ K+L L D P + +
Sbjct: 18 LQTKKGREQAGAYLIEGIHLIDEAIKNQASISELIISED---KQLNLDIDYPVEKQILVS 74
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDP-ASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ L G+F + + DP + PL + DN++DPGN+G+++R A G
Sbjct: 75 AEISKQLSETETSQGVFAVLQMLVPENDPDLTKPL-LFLDNVQDPGNVGTMIRTADAAGF 133
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
VV +G VD+Y++KVIR+
Sbjct: 134 GGVVLGKGSVDLYNSKVIRS 153
>gi|313886769|ref|ZP_07820476.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923810|gb|EFR34612.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 262
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 85/146 (58%), Gaps = 13/146 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL--PLPEDVPQHRV-- 59
++ K R++ + EG++++ + L A + +++ ++ +++K L PE + + +
Sbjct: 23 LQLTKHRKQSNLFIAEGEKLIGEMLPA-YRCQLLVGTE-ELVKPLLGRCPESIAEAVILP 80
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPA--HPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
D K I+ S L +P ++ + E+PA P A P ++ D+++DPGN+G++LR C
Sbjct: 81 DPKQIERVSGLKSPRPLLALCEIPAVEAPQALQQP-----TLLLDDVQDPGNVGTLLRTC 135
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
+G RQV+C+ GC D+Y KV++A
Sbjct: 136 DWMGIRQVLCTEGCADVYAPKVLQAT 161
>gi|433634696|ref|YP_007268323.1| Putative 23S rRNA methyltransferase TsnR [Mycobacterium canettii
CIPT 140070017]
gi|432166289|emb|CCK63782.1| Putative 23S rRNA methyltransferase TsnR [Mycobacterium canettii
CIPT 140070017]
Length = 260
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDYKNIQLW 67
R + G + EG ++ AL L ++ VF ++ + L + H V + +
Sbjct: 21 RRRAGRFLAEGPNLVAAALARGL-VREVFVTEVAARRHELLLAAHEASVHLVTERAAKAL 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + +LPA + + S L V IR+PGN G+++R+ A+GA V+
Sbjct: 80 SDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAAVIL 139
Query: 128 SRGCVDIYDNKVIRAA 143
+ VD Y+ K +RA+
Sbjct: 140 AGRSVDPYNGKCLRAS 155
>gi|15841100|ref|NP_336137.1| rRNA methylase [Mycobacterium tuberculosis CDC1551]
gi|31792831|ref|NP_855324.1| 23S rRNA methyltransferase [Mycobacterium bovis AF2122/97]
gi|121637552|ref|YP_977775.1| 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148822852|ref|YP_001287606.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
gi|224990027|ref|YP_002644714.1| 23S rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172]
gi|253799316|ref|YP_003032317.1| 23S rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
gi|254231845|ref|ZP_04925172.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
gi|254364493|ref|ZP_04980539.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
Haarlem]
gi|289443098|ref|ZP_06432842.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
gi|289447254|ref|ZP_06436998.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
gi|289569691|ref|ZP_06449918.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
gi|289574313|ref|ZP_06454540.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
gi|289750192|ref|ZP_06509570.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
gi|289761795|ref|ZP_06521173.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
1503]
gi|294996594|ref|ZP_06802285.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 210]
gi|297634197|ref|ZP_06951977.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
4207]
gi|297731184|ref|ZP_06960302.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
R506]
gi|298525142|ref|ZP_07012551.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
gi|306779644|ref|ZP_07417981.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu002]
gi|306784375|ref|ZP_07422697.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu003]
gi|306788744|ref|ZP_07427066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu004]
gi|306793080|ref|ZP_07431382.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu005]
gi|306797461|ref|ZP_07435763.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu006]
gi|306803340|ref|ZP_07440008.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu008]
gi|306807922|ref|ZP_07444590.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu007]
gi|306967739|ref|ZP_07480400.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu009]
gi|313658516|ref|ZP_07815396.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
V2475]
gi|340626650|ref|YP_004745102.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium canettii
CIPT 140010059]
gi|375296562|ref|YP_005100829.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
4207]
gi|378771386|ref|YP_005171119.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
Mexico]
gi|385991042|ref|YP_005909340.1| rRNA methylase, putative [Mycobacterium tuberculosis CCDC5180]
gi|385994645|ref|YP_005912943.1| rRNA methylase, putative [Mycobacterium tuberculosis CCDC5079]
gi|385998419|ref|YP_005916717.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis CTRI-2]
gi|386004617|ref|YP_005922896.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
RGTB423]
gi|392386316|ref|YP_005307945.1| tsnR [Mycobacterium tuberculosis UT205]
gi|392432773|ref|YP_006473817.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
605]
gi|422812631|ref|ZP_16861015.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
CDC1551A]
gi|424803983|ref|ZP_18229414.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis W-148]
gi|433626737|ref|YP_007260366.1| Putative 23S rRNA methyltransferase TsnR [Mycobacterium canettii
CIPT 140060008]
gi|449063704|ref|YP_007430787.1| rRNA methylase [Mycobacterium bovis BCG str. Korea 1168P]
gi|13881315|gb|AAK45951.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
gi|31618421|emb|CAD96339.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis
AF2122/97]
gi|121493199|emb|CAL71670.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|124600904|gb|EAY59914.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
gi|134150007|gb|EBA42052.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
Haarlem]
gi|148721379|gb|ABR06004.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
gi|224773140|dbj|BAH25946.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253320819|gb|ACT25422.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
1435]
gi|289416017|gb|EFD13257.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
gi|289420212|gb|EFD17413.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
gi|289538744|gb|EFD43322.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
gi|289543445|gb|EFD47093.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
gi|289690779|gb|EFD58208.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
gi|289709301|gb|EFD73317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
1503]
gi|298494936|gb|EFI30230.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
gi|308327413|gb|EFP16264.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu002]
gi|308330923|gb|EFP19774.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu003]
gi|308334693|gb|EFP23544.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu004]
gi|308338535|gb|EFP27386.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu005]
gi|308342205|gb|EFP31056.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu006]
gi|308345731|gb|EFP34582.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu007]
gi|308350031|gb|EFP38882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu008]
gi|308354668|gb|EFP43519.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu009]
gi|323719905|gb|EGB29018.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
CDC1551A]
gi|326903259|gb|EGE50192.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis W-148]
gi|328459067|gb|AEB04490.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
4207]
gi|339294599|gb|AEJ46710.1| rRNA methylase, putative [Mycobacterium tuberculosis CCDC5079]
gi|339298235|gb|AEJ50345.1| rRNA methylase, putative [Mycobacterium tuberculosis CCDC5180]
gi|340004840|emb|CCC43985.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium canettii
CIPT 140010059]
gi|341601570|emb|CCC64243.1| possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
str. Moreau RDJ]
gi|344219465|gb|AEN00096.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis CTRI-2]
gi|356593707|gb|AET18936.1| Putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
Mexico]
gi|378544867|emb|CCE37142.1| tsnR [Mycobacterium tuberculosis UT205]
gi|379027871|dbj|BAL65604.1| 23S rRNA methyltransferase [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
gi|380725105|gb|AFE12900.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium
tuberculosis RGTB423]
gi|392054182|gb|AFM49740.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
605]
gi|432154343|emb|CCK51575.1| Putative 23S rRNA methyltransferase TsnR [Mycobacterium canettii
CIPT 140060008]
gi|440581111|emb|CCG11514.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium
tuberculosis 7199-99]
gi|449032212|gb|AGE67639.1| rRNA methylase [Mycobacterium bovis BCG str. Korea 1168P]
Length = 260
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDYKNIQLW 67
R + G + EG ++ AL L ++ VF ++ + L + H V + +
Sbjct: 21 RRRAGRFLAEGPNLVAAALARGL-VREVFVTEVAARRHELLLAAHEASVHLVTERAAKAL 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + +LPA + + S L V IR+PGN G+++R+ A+GA V+
Sbjct: 80 SDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAAVIL 139
Query: 128 SRGCVDIYDNKVIRAA 143
+ VD Y+ K +RA+
Sbjct: 140 AGRSVDPYNGKCLRAS 155
>gi|433630739|ref|YP_007264367.1| Putative 23S rRNA methyltransferase TsnR [Mycobacterium canettii
CIPT 140070010]
gi|432162332|emb|CCK59708.1| Putative 23S rRNA methyltransferase TsnR [Mycobacterium canettii
CIPT 140070010]
Length = 260
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDYKNIQLW 67
R + G + EG ++ AL L ++ VF ++ + L + P H V + +
Sbjct: 21 RRRAGRFLAEGPNLVAAALARGL-VREVFVTEVAARRHELLLAAHEAPVHLVTERAAKAL 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + +LPA + + S L V I +PGN G+++R+ A+GA V+
Sbjct: 80 SDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIGEPGNAGTVIRIADAMGAAAVIL 139
Query: 128 SRGCVDIYDNKVIRAA 143
+ VD Y+ K +RA+
Sbjct: 140 AGRSVDPYNGKCLRAS 155
>gi|119357948|ref|YP_912592.1| tRNA/rRNA methyltransferase SpoU [Chlorobium phaeobacteroides DSM
266]
gi|119355297|gb|ABL66168.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
266]
Length = 268
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 10/153 (6%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRI---LIDALKANLKLKMVFFSQWDI-LKELP-LPEDVP 55
V ++ +K R++ G + EG R L + L + + +I L P +PED
Sbjct: 17 FVKLQEKKYRDQDGLFLAEGLRTVRELCQNIPDESMLLALLLREGEIGLGGFPEIPED-K 75
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIF---ELPAHPIASIDPA-SLPLNIVCDNIRDPGNMG 111
+ ++ + L S P G+IG+F ++ +P D L I D ++DPGN+G
Sbjct: 76 LYVMNSEQCSLLSSTAAPQGVIGVFRQQQVSRYPCGFKDEKKGRSLLIALDEVQDPGNVG 135
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
+ILR A GA ++CS G D Y+ KV+R++A
Sbjct: 136 TILRTAAWFGADALICSTGTADRYNAKVVRSSA 168
>gi|420210963|ref|ZP_14716352.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM001]
gi|394282900|gb|EJE27082.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM001]
Length = 246
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +++R+K G ++EG ++ +A ++ +++ +F D + + ++++ K
Sbjct: 18 LKKKRERDKTGLALVEGIHLIEEAYQSQIEVIQLFIVDPDRMSSSIIDYAKEVYQINLKV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S VTP G I + P + D ++ D I+DPGN+G+++R A G
Sbjct: 78 AEALSGTVTPQGFFAIIKKPTY-----DKTLAKQVLLIDRIQDPGNLGTLIRTADAAGLD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V +G D + +KVIRA+
Sbjct: 133 LIVMEKGTADPFQDKVIRAS 152
>gi|240849692|ref|YP_002971080.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
gi|240266815|gb|ACS50403.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
Length = 289
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
+ +K R ++G M EG +++IDAL ++ + FS+ I E V
Sbjct: 31 LSQKKNRNREGLFMAEGLKLVIDALDLGWTIQTLIFSKSKIGNAAIENTAARAVANGGFV 90
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K Q + +T P +IGIF+ HP I + I D +RDPGN+G+I+R
Sbjct: 91 IKASQKVMESLTRRDNPQTVIGIFKQKWHPFEMIKGQIKDVYIALDRVRDPGNLGTIIRT 150
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 151 ADAVGAKGVILIGETTDPFSTETVRAT 177
>gi|118617269|ref|YP_905601.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
gi|118569379|gb|ABL04130.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
Length = 275
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL--PEDVPQHRVDYKNIQLW 67
R + + EG L++A A ++ ++ ++ + PL +D P + V + +
Sbjct: 35 RRRTSRFLAEGPN-LVEAAAARGLIRELYVTEAAEQRHEPLLARQDAPVYVVTERAAKAL 93
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + E+P +A + + L V I +PGN G+++R+ A+GA VV
Sbjct: 94 SDTVTPSGLVAVCEMPTTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIADAMGANAVVL 153
Query: 128 SRGCVDIYDNKVIRAAA 144
+ VD Y+ K +RA+A
Sbjct: 154 AGNSVDPYNGKCLRASA 170
>gi|414084442|ref|YP_006993150.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Carnobacterium maltaromaticum LMA28]
gi|412998026|emb|CCO11835.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Carnobacterium maltaromaticum LMA28]
Length = 254
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K RE+ G ++EG ++ +A+K + + S+ K+L L D P + +
Sbjct: 18 LQTKKGREQAGAYLIEGIHLIDEAIKNQASISELIISED---KQLNLDIDYPVEKQILVS 74
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ L G+F + + DP + DN++DPGN+G+++R A G
Sbjct: 75 AEISKQLSETETSQGVFAVLQMLVPENDPDLTKPLLFLDNVQDPGNVGTMIRTADAAGFG 134
Query: 124 QVVCSRGCVDIYDNKVIRA 142
VV +G VD+Y++KVIR+
Sbjct: 135 GVVLGKGSVDLYNSKVIRS 153
>gi|307084225|ref|ZP_07493338.1| 23S rRNA methyltransferase tsnR, partial [Mycobacterium
tuberculosis SUMu012]
gi|308366170|gb|EFP55021.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
SUMu012]
Length = 256
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDYKNIQLW 67
R + G + EG ++ AL L ++ VF ++ + L + H V + +
Sbjct: 21 RRRAGRFLAEGPNLVAAALARGL-VREVFVTEVAARRHELLLAAHEASVHLVTERAAKAL 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + +LPA + + S L V IR+PGN G+++R+ A+GA V+
Sbjct: 80 SDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAAVIL 139
Query: 128 SRGCVDIYDNKVIRAA 143
+ VD Y+ K +RA+
Sbjct: 140 AGRSVDPYNGKCLRAS 155
>gi|183982465|ref|YP_001850756.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
gi|443491248|ref|YP_007369395.1| 23S rRNA methyltransferase TsnR [Mycobacterium liflandii 128FXT]
gi|183175791|gb|ACC40901.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
gi|442583745|gb|AGC62888.1| 23S rRNA methyltransferase TsnR [Mycobacterium liflandii 128FXT]
Length = 275
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL--PEDVPQHRVDYKNIQLW 67
R + + EG L++A A ++ ++ ++ + PL +D P + V + +
Sbjct: 35 RRRTSRFLAEGPN-LVEAAAARGLIRELYVTEAAEQRHEPLLARQDAPVYVVTERAAKAL 93
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + E+P +A + + L V I +PGN G+++R+ A+GA VV
Sbjct: 94 SDTVTPSGLVAVCEMPTTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIADAMGANAVVL 153
Query: 128 SRGCVDIYDNKVIRAAA 144
+ VD Y+ K +RA+A
Sbjct: 154 AGNSVDPYNGKCLRASA 170
>gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 254
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 76/136 (55%), Gaps = 7/136 (5%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD--YKNIQLW 67
R ++G +EG +++ALK++ +++ + + + ++P + H + +K I
Sbjct: 23 RYEEGMFFVEGTTNVLEALKSDFEIEYIVMGEG-VKIDIPKGDFEIVHTTERIFKKI--- 78
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP ++ I ++P + + + + ++ DNI+DPGN+G+I+R A G +
Sbjct: 79 SDTVTPQMVMAIIKIPKY-VENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFT 137
Query: 128 SRGCVDIYDNKVIRAA 143
CVD+++ KV+RA+
Sbjct: 138 INNCVDVFNPKVLRAS 153
>gi|336413404|ref|ZP_08593756.1| hypothetical protein HMPREF1017_00864 [Bacteroides ovatus
3_8_47FAA]
gi|335938448|gb|EGN00338.1| hypothetical protein HMPREF1017_00864 [Bacteroides ovatus
3_8_47FAA]
Length = 254
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+++G + EG +++ D L + S W L+E P + V ++
Sbjct: 15 LELKKIRKEEGVFLAEGPKLVSDLLGHFPCRFLAATSSW--LQEHPDIDASELVEVSQED 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASL--PLNIVCDNIRDPGNMGSILRVCAAVG 121
+ S L TP ++ IFE P + ++DP ++ L + D+++DPGN+G+I+R+ G
Sbjct: 73 LSRASLLKTPQQVLAIFEQPQY---TLDPEAVRSSLCLALDDVQDPGNLGTIIRLADWFG 129
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++CS+ VD+Y+ K I+A
Sbjct: 130 IEHIICSQNTVDVYNPKTIQAT 151
>gi|423133322|ref|ZP_17120969.1| hypothetical protein HMPREF9715_00744 [Myroides odoratimimus CIP
101113]
gi|371648822|gb|EHO14307.1| hypothetical protein HMPREF9715_00744 [Myroides odoratimimus CIP
101113]
Length = 244
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 78/143 (54%), Gaps = 14/143 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY-- 61
+ +K R++ + EG +++ + +K++L L+ ++ ++ L +VPQ +V
Sbjct: 13 LHQKKYRKEHQLFIAEGVKVVGELVKSSLVLEHIYCTE-------ELKFNVPQSKVSIVS 65
Query: 62 -KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+++ S L T + +F S+D + L + D+IRDPGN+G+I+R+C
Sbjct: 66 KDDLKKMSALSTTSNCLAVFHCTEQE--SVDYSDLI--VALDDIRDPGNLGTIIRLCDWF 121
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + ++C+ VD+Y+ KV++A
Sbjct: 122 GIKHIICTSETVDVYNPKVVQAT 144
>gi|423328920|ref|ZP_17306727.1| hypothetical protein HMPREF9711_02301 [Myroides odoratimimus CCUG
3837]
gi|404604054|gb|EKB03696.1| hypothetical protein HMPREF9711_02301 [Myroides odoratimimus CCUG
3837]
Length = 244
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 78/143 (54%), Gaps = 14/143 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY-- 61
+ +K R++ + EG +++ + +K++L L+ ++ ++ L +VPQ +V
Sbjct: 13 LHQKKYRKEHQLFIAEGVKVVGELVKSSLVLEHIYCTE-------ELKFNVPQSKVSIVS 65
Query: 62 -KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+++ S L T + +F S+D + L + D+IRDPGN+G+I+R+C
Sbjct: 66 KDDLKKMSALSTTSNCLAVFHCTEQE--SVDYSDLI--VALDDIRDPGNLGTIIRLCDWF 121
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + ++C+ VD+Y+ KV++A
Sbjct: 122 GIKHIICTSETVDVYNPKVVQAT 144
>gi|218297027|ref|ZP_03497704.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
gi|218242582|gb|EED09119.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
Length = 262
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 8/144 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--- 57
+ +K RK+RE+ G ++EG+R + AL+A LK V + P E + Q
Sbjct: 14 LAALKERKERERVGLFLVEGRREVERALQAGLKPVTVLLGP----RATPAEEALAQGEVL 69
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
R+ + ++ S P +I +F +P + + PL +V + PGN+G+ILR
Sbjct: 70 RLSEEALKRVSSRENPAQVIAVFPIPRRALKEVRLPQDPLVLVLLGLEKPGNLGAILRSA 129
Query: 118 AAVGARQVVCSRGCVDIYDNKVIR 141
GA V+ + G VD+Y +VIR
Sbjct: 130 DGAGAHLVLVAEG-VDLYSPQVIR 152
>gi|302380365|ref|ZP_07268835.1| RNA methyltransferase, TrmH family [Finegoldia magna
ACS-171-V-Col3]
gi|302311855|gb|EFK93866.1| RNA methyltransferase, TrmH family [Finegoldia magna
ACS-171-V-Col3]
Length = 243
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R+K ++EG ++ +A+K+N+ +K V + E + E V D K
Sbjct: 19 KKYRQKYNEFVIEGYKLYQEAIKSNINIKQVIIREG----ENFIDECV---YFDSKTFNS 71
Query: 67 WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
S++ P GII + D + +NI DPGN+G+I+R A G ++V
Sbjct: 72 LSEMNNPEGIICVVSFIEQKDVKSDQI-----LFLENINDPGNLGTIIRSAEAFGYNKIV 126
Query: 127 CSRGCVDIYDNKVIRAA 143
S DIY++K IR+A
Sbjct: 127 LSNNSCDIYNSKTIRSA 143
>gi|372222833|ref|ZP_09501254.1| tRNA/rRNA methyltransferase SpoU [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 240
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLK--MVFFSQWDILKELPLPEDVPQHRVDY 61
+ +K R + +EG + + + L +N L+ +V D K E + D
Sbjct: 13 LHQKKYRNELELFFVEGIKTVKELLHSNYSLEKLLVTAEHSDEFKNFDCDEITAE---DL 69
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
K I S L TP G++ +F++P S +V D++RDPGN+G+I+R+C G
Sbjct: 70 KKI---SALKTPSGVLAVFKIPT----SAKTIEADWTLVLDDVRDPGNLGTIIRLCDWFG 122
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+++VCS VD Y+ KV++A
Sbjct: 123 IQRLVCSVQTVDCYNPKVLQAT 144
>gi|374385777|ref|ZP_09643280.1| hypothetical protein HMPREF9449_01666 [Odoribacter laneus YIT
12061]
gi|373225479|gb|EHP47813.1| hypothetical protein HMPREF9449_01666 [Odoribacter laneus YIT
12061]
Length = 254
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 21/150 (14%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR----- 58
++ +K R+K +EG++++ + L ++LK+ + L PE + ++R
Sbjct: 13 LEKKKFRDKYNLFKIEGEKLVQELLLSDLKINTL----------LAYPEWIARNRNSCTL 62
Query: 59 -----VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
VD + + L S+ + P +I + +P + + + L++V + I+DPGN+G+I
Sbjct: 63 PKIIEVDAREMGLISNFQSLPEVIALASIPEYTYSE-EEIIHSLSLVLNGIQDPGNLGTI 121
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LRV G R + C R C +Y+ K ++A+
Sbjct: 122 LRVADWFGVRHIFCDRDCASVYNPKCVQAS 151
>gi|269925885|ref|YP_003322508.1| tRNA/rRNA methyltransferase SpoU [Thermobaculum terrenum ATCC
BAA-798]
gi|269789545|gb|ACZ41686.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
BAA-798]
Length = 267
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-----QWDILKEL--PLPEDVPQ 56
++ R+ R+ G ++EG R + A+ A K V +S + D++ ++ + + P
Sbjct: 16 LRERRGRKASGAFLVEGPRAIQQAMVAGHKPLKVLYSPEVVVRRDVVNKVLGQIGSETPL 75
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPA-HPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V + SD VT GII FEL + HP ++ + P+ +V D + DPGN+G++LR
Sbjct: 76 LEVSEDVLSSVSDTVTSQGIIAAFELLSWHPREGVNANAGPV-LVLDRVSDPGNVGTLLR 134
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
AA G+ V+ S G D Y+ K +RA+A
Sbjct: 135 SAAAAGSAAVLLSEGSADPYNPKAVRASA 163
>gi|433641783|ref|YP_007287542.1| Putative 23S rRNA methyltransferase TsnR [Mycobacterium canettii
CIPT 140070008]
gi|432158331|emb|CCK55622.1| Putative 23S rRNA methyltransferase TsnR [Mycobacterium canettii
CIPT 140070008]
Length = 260
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDYKNIQLW 67
R + G + EG ++ AL L ++ VF ++ + L + H V + ++
Sbjct: 21 RRRAGRFLAEGPNLVAAALARGL-VREVFVTEVAARRHELLLAAHEASVHLVTERAAKVL 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + +LPA + + S L V IR+PGN G+++R+ A+G+ V+
Sbjct: 80 SDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGSAAVIL 139
Query: 128 SRGCVDIYDNKVIRAA 143
+ VD Y+ K +RA+
Sbjct: 140 AGRSVDPYNGKCLRAS 155
>gi|224024447|ref|ZP_03642813.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
18228]
gi|224017669|gb|EEF75681.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
18228]
Length = 250
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 10/146 (6%)
Query: 3 YMKS---RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV 59
Y++S +K R+++ + EG +++ D L ++ +W L E PL E V
Sbjct: 9 YIRSLELKKYRKEEQVFIAEGHKLVGDLLGHFPCRLLLGTDKW--LNEHPLIEAEETIEV 66
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDP--ASLPLNIVCDNIRDPGNMGSILRVC 117
+ + S L TP ++ +FE+P + DP A L + D+++DPGN+G+I+R+
Sbjct: 67 SREELSRASLLKTPQEVLALFEIPHY---EWDPKIAERSLCLALDDVQDPGNLGTIIRIA 123
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
G + CS GCVD ++ K ++A
Sbjct: 124 DWFGIHHIFCSNGCVDAFNPKTVQAT 149
>gi|333370255|ref|ZP_08462269.1| TrmH family RNA methyltransferase [Desmospora sp. 8437]
gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437]
Length = 263
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI--LKELPLPEDVPQHRVDY 61
+ +RK RE+ G +++EG+++L +A +A +++ V S I L++L + V + +
Sbjct: 20 LSTRKGREEFGSILIEGEKLLKEAARAGWQVRSVIVSDEGIRGLEDLSYLDGVSVYALYP 79
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
D TP GI +P + P+ ++ D IRDPGN+G+ILR A G
Sbjct: 80 STFAQLVDTQTPQGIAAEVVVPENKEGYRIRGEEPV-LLLDAIRDPGNLGTILRTAEAAG 138
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
V G VD ++ KV+R+A
Sbjct: 139 VGDVWLGAGTVDPFNPKVVRSA 160
>gi|409386805|ref|ZP_11239158.1| rRNA methylase [Lactococcus raffinolactis 4877]
gi|399206018|emb|CCK20073.1| rRNA methylase [Lactococcus raffinolactis 4877]
Length = 166
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 17 MLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDYKNIQLWSDLVTPP 74
++EG+ + +ALK+ K +F ++ D + +DV ++ SD TP
Sbjct: 29 LIEGQHLYEEALKSGADFKQIFVTEKFADTPDATLISDDV---------MKFLSDAETPQ 79
Query: 75 GIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDI 134
GII L A +S+ P L ++ +N++DPGN+G+++R A G V+ + G DI
Sbjct: 80 GIIAEVSLEA---SSLKPEQLNKLLILENVQDPGNVGTMIRTADAAGFDGVILTAGSADI 136
Query: 135 YDNKVIRA 142
Y KV+R
Sbjct: 137 YSAKVLRT 144
>gi|408356325|ref|YP_006844856.1| RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407727096|dbj|BAM47094.1| putative RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 246
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 27/150 (18%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K +K R+++G ++EG+ ++ +ALK S+W++ E + E + +D N
Sbjct: 16 LKQKKYRKEQGCFIVEGEHLVEEALK----------SEWEV--ETIVVESTFEASIDLTN 63
Query: 64 IQLW--SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
IQ+ SD V +P GI+ I + I S ++ D ++DPGN+G++
Sbjct: 64 IQVETVSDHVFAHLAQTKSPQGILAIVK-----IKSTHDYEKNRLLLLDAVQDPGNLGTM 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+R A G ++ G VD+Y++KVIRA+
Sbjct: 119 IRTADAAGFDAIILGDGTVDLYNDKVIRAS 148
>gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438573|ref|ZP_08618205.1| hypothetical protein HMPREF0990_00599 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145846701|gb|EDK23619.1| RNA methyltransferase, TrmH family [Ruminococcus torques ATCC
27756]
gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336018964|gb|EGN48698.1| hypothetical protein HMPREF0990_00599 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 261
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 18/148 (12%)
Query: 5 KSRKQREKKGWLMLEG---------KRILIDALKANLKLKMVFFSQWDILKELPLPEDVP 55
K ++REK+G ++EG +RI+ + + + K V ++E + D
Sbjct: 18 KKSREREKEGVFIVEGPRMAEEIPRERIVKLYVSESFQAKCVKEKNDRFIQEAEVMSDTV 77
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V SD TP GI+ + + I P +V +NI+DPGN+G+I R
Sbjct: 78 FAHV--------SDTKTPQGILAVVRRMEYTAEDI-LGETPHVLVLENIQDPGNLGTIFR 128
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA +V S+ CVD+Y+ KVIR+
Sbjct: 129 TAEAAGATGIVLSKDCVDLYNPKVIRST 156
>gi|260063680|ref|YP_003196760.1| rRNA methylase [Robiginitalea biformata HTCC2501]
gi|88783125|gb|EAR14298.1| rRNA methylase [Robiginitalea biformata HTCC2501]
Length = 237
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 20/144 (13%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR-VDYK 62
+ +K R ++G + EG +++ + L + L+ ++ + PE++P + +
Sbjct: 13 LHQKKYRIREGQFLAEGMKLVGELLDSGLEPVGLYSTA---------PEELPGSQPITEG 63
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPL---NIVCDNIRDPGNMGSILRVCAA 119
++ S LV P G++G+F +P DP L + D +RDPGN+G+++R+C
Sbjct: 64 ELRKASALVRPSGVLGVFPIP-------DPEPLTFEGWTLALDGVRDPGNLGTLIRLCDW 116
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G +++CS VD Y+ KV++A
Sbjct: 117 FGIGELLCSPDTVDCYNPKVLQAT 140
>gi|118594703|ref|ZP_01552050.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
gi|118440481|gb|EAV47108.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
Length = 263
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
H + ++ SDL + G++ I ++P+HP S + L+++ D+I+DPGN+G+ILR
Sbjct: 78 HILSHELFCALSDLDSVNGLMAIIDIPSHPYYS---NGVGLHLLLDDIQDPGNLGAILRT 134
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AA G + V S+GC D++ KVIR +
Sbjct: 135 HAAAGNKFVFLSKGCCDLWSPKVIRGS 161
>gi|415884138|ref|ZP_11546167.1| RNA methyltransferase, TrmH family [Bacillus methanolicus MGA3]
gi|387591933|gb|EIJ84250.1| RNA methyltransferase, TrmH family [Bacillus methanolicus MGA3]
Length = 250
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 16/144 (11%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE----DVPQHRVDY 61
++K+R+K G ++EG ++ +ALKA L ++ + +ELP P +P V
Sbjct: 20 TKKERDKTGTFLVEGHHLVEEALKAGSVLHLIINEK----EELP-PRWNYGSIPVTMVTD 74
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAA 119
+ I+ S+ P G++ + IDP + ++ D ++DPGN+G+++R A
Sbjct: 75 EIIKTLSETEAPQGVLAVCRQ-----NKIDPEQIKGKRFLLIDAVQDPGNVGTMIRTADA 129
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V+ G VDIY++KV+R+A
Sbjct: 130 AGVDAVIVGNGSVDIYNSKVLRSA 153
>gi|371778570|ref|ZP_09484892.1| tRNA/rRNA methyltransferase [Anaerophaga sp. HS1]
Length = 256
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R+K + EG +++ D L A LK ++++ ++ + + E + + +D
Sbjct: 13 LAHKKYRDKNSLFVAEGSKLVNDLLDAGLKSELIYSTKENAITEKH--KKLITQIIDNNE 70
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L P +I +F P + L + D I+DPGNMG+ILR+ A
Sbjct: 71 LKQLSFLTHPRDVIALFRQPDFSF-TFGEHRHNLTLCLDGIQDPGNMGTILRLAAWFNIP 129
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VVCS VD ++ KVI+A+
Sbjct: 130 YVVCSPDTVDAFNPKVIQAS 149
>gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10]
gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens
MLS10]
Length = 251
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K R+K G +EG ++ +A+++ + +K + + L E +VP V
Sbjct: 18 LHTKKGRDKSGLFFIEGDHLIEEAIRSAITIKELILEENQSLPEAWEDPEVPVVWVTQPV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN----IVCDNIRDPGNMGSILRVCAA 119
+ + TP G + E P P+ + LPL+ + D ++DPGN+G+++R A
Sbjct: 78 LNELCETETPQGFAAVCEKP--PLVN-----LPLDDGRFLFIDGVQDPGNLGAMIRTAEA 130
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G VV G VD+Y+ KVIR+
Sbjct: 131 AGITGVVIGDGTVDVYNGKVIRST 154
>gi|427714401|ref|YP_007063025.1| rRNA methylase [Synechococcus sp. PCC 6312]
gi|427378530|gb|AFY62482.1| rRNA methylase [Synechococcus sp. PCC 6312]
Length = 265
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 15/149 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-QWD-----ILKELPLPEDVPQH 57
+ K R + L+LEG ++++A L MV+ + W + + L +++ +H
Sbjct: 16 LHQGKYRHRHQQLLLEGTHLIMEACAVRYPLLMVYSTPAWQGKNPVLYQHL---QEIAEH 72
Query: 58 --RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V + + TP GI+ I P P +S++ SL +V + I+DPGN+G+++R
Sbjct: 73 LESVSETVLAALATTQTPDGIVAIA--PRRPTSSLELHSL--GLVLEGIQDPGNLGTLIR 128
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
AA G + GCVD+ KV+RA+A
Sbjct: 129 TAAAAGVEGIYLGPGCVDLEHPKVLRASA 157
>gi|145224123|ref|YP_001134801.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium gilvum PYR-GCK]
gi|145216609|gb|ABP46013.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
Length = 252
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Query: 2 VYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY 61
V + R + + EG ++ AL+ L + VF ++ + PL P H V
Sbjct: 5 VKLHRHTGRRRAARFLAEGPNLVEAALRRGL-VSEVFATESAADRFGPLLAGAPVHLVTE 63
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
K + SD VTP G++ + LP + + L V I +PGN G+++RV A+G
Sbjct: 64 KAAKALSDTVTPVGLVAVCTLPEVDLTEVLAGEPTLVAVPVGISEPGNAGTVIRVADAMG 123
Query: 122 ARQVVCSRGCVDIYDNKVIRAAA 144
A VV + VD Y+ K +RA+A
Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASA 146
>gi|326803177|ref|YP_004320995.1| RNA methyltransferase, TrmH family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651120|gb|AEA01303.1| RNA methyltransferase, TrmH family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 259
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 23/145 (15%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYK--- 62
SR+ REK G ++EG +L AL+A L VF + P+H D+K
Sbjct: 18 SRRGREKAGQYLIEGPHLLEAALEAGADLAEVFLT--------------PEHEADFKLAN 63
Query: 63 ----NIQLWSDLVTPPGIIGIFELPAH-PIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+ ++ S+L G+F + AS+ PAS P ++ D ++DPGN+G+++R
Sbjct: 64 QTLISPEIASELSDTQRDQGVFAVVNRDQKASLKPAS-PAVLLLDGVQDPGNLGTLIRSA 122
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A + + +G VD Y KV+R+
Sbjct: 123 DAFNYQDIYLGKGTVDPYSPKVVRS 147
>gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
Length = 252
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 19/148 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF-------SQWDILKELPLPEDVPQ 56
+ ++K R+K+G M+EG ++ +A+K +K + +QW+I + +
Sbjct: 18 LHNKKDRDKQGLFMVEGFHLVEEAIKNKDCVKELIIRESIEVPAQWNI-------DGIEI 70
Query: 57 HRVDYKNIQLWSDLVTPPGIIGI-FELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V+ I+L SD TP GII + F+ I L L D ++DPGN+G+I+R
Sbjct: 71 TVVNEAIIKLLSDTETPQGIIAVCFQTKHAEIIHTAQKVLLL----DAVQDPGNLGTIIR 126
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++ G VD+Y+ KV+R+
Sbjct: 127 TADAAGVDAIIVGEGSVDVYNPKVVRST 154
>gi|78189691|ref|YP_380029.1| SpoU rRNA methylase [Chlorobium chlorochromatii CaD3]
gi|78171890|gb|ABB28986.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
CaD3]
Length = 265
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ K +D TP GI IF P ++P L + D+++DPGN+G+I+R A
Sbjct: 79 ITAKECAQLADTTTPSGIFAIFRQPTFQPTIVNPQRRSLVVALDDVQDPGNVGTIMRTAA 138
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAAA 144
G ++CS+G D+Y+ KV+R+ A
Sbjct: 139 WFGVDALLCSQGTADLYNPKVVRSCA 164
>gi|423296443|ref|ZP_17274528.1| hypothetical protein HMPREF1070_03193 [Bacteroides ovatus
CL03T12C18]
gi|392670166|gb|EIY63651.1| hypothetical protein HMPREF1070_03193 [Bacteroides ovatus
CL03T12C18]
Length = 254
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+++G + EG +++ D L + S W L+E P + V ++
Sbjct: 15 LELKKIRKEEGVFLAEGPKLVGDLLGHFPCRFLAATSSW--LQEHPDIDASELVEVSQED 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASL--PLNIVCDNIRDPGNMGSILRVCAAVG 121
+ S L TP ++ IFE P + ++DP ++ L + D+++DPGN+G+I+R+ G
Sbjct: 73 LSRASLLKTPQQVLAIFEQPQY---TLDPEAVRSSLCLALDDVQDPGNLGTIIRLADWFG 129
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++CS+ VD+Y+ K I+A
Sbjct: 130 IEHIICSQNTVDVYNPKTIQAT 151
>gi|325291775|ref|YP_004277639.1| rRNA methylase [Agrobacterium sp. H13-3]
gi|325059628|gb|ADY63319.1| rRNA methylase [Agrobacterium sp. H13-3]
Length = 286
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE+ G M EG +++IDAL+ + + +++ K PL E V
Sbjct: 33 LTQKKGREETGTFMAEGLKLVIDALELGWTISTLVYAK--AAKGKPLVEQAAVKTVASGG 90
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIF+ P+ I P I D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIASITRRDNPQMVVGIFDQRWKPLKDIRPEKGETYIALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ C D + + +RA
Sbjct: 151 RTADAAGASGVILVGDCTDPFSLETVRA 178
>gi|329850767|ref|ZP_08265612.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
gi|328841082|gb|EGF90653.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
Length = 263
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD---------ILKELPLPEDVPQH 57
RK+RE+ G + EG +I+IDAL ++ F + D I + L + +V +
Sbjct: 22 RKEREETGRFLAEGLKIIIDALDQGFAPLILVFGKSDDRHPMLERAIRETLAVEGEVLE- 80
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V + ++ S P ++ +F +A IDP S + + + IRDPGN+G+I+R
Sbjct: 81 -VTREILEKISRKDNPQMVVAVFAQQVKSLADIDPNSNAVWVALEQIRDPGNLGTIIRTA 139
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G V+ CVD + + +RA
Sbjct: 140 DAAGIGGVILIGDCVDPFSVETVRAT 165
>gi|365538934|ref|ZP_09364109.1| RNA methyltransferase, TrmH family [Vibrio ordalii ATCC 33509]
Length = 244
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 24/149 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYK- 62
+ +KQR+ G +++G++ +++ + + L +K VF + E + Q+RV+
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELINSQLTVKQVFAT----------AEFIAQNRVELSV 62
Query: 63 ---------NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
++ S LV+ I + E+P + P + L I D + DPGN+G+I
Sbjct: 63 FECIEATLDDLTKASTLVSNNAAIAVVEIPEVTV----PEAKGLMIALDGVSDPGNLGTI 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+RV G +Q+V S C D Y+ K I A
Sbjct: 119 IRVADWYGIKQIVASHDCADPYNPKTISA 147
>gi|227431096|ref|ZP_03913154.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227353136|gb|EEJ43304.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 257
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ ++K R++ +L+G ++ +A+KA K + ++ + LP +P VP + +
Sbjct: 18 LATKKGRQENHTYLLDGLHLVEEAVKAGAKFHAIMATEKQMADYLPNVPHGVPAFEISEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + DP+ + ++ D I+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPEK---TFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D + KV+RA
Sbjct: 135 GFKGVVLGAGTADAFAPKVVRA 156
>gi|260592420|ref|ZP_05857878.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319]
gi|260535656|gb|EEX18273.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319]
Length = 239
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 22/140 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K REK G + EG +++ D L+A K VF ED+ ++
Sbjct: 22 LETKKGREKVGLFVAEGPKVVKDLLQAGFIAKEVF-------------EDI-------ED 61
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
I+ S L P ++G+F LP + + L L + D ++DPGN+G+I+RV G +
Sbjct: 62 IKEISFLQHPQSMLGVFHLPTNGFKELSMNQLVLAL--DGVQDPGNLGTIIRVADWFGIK 119
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+ CS D ++ KV++A
Sbjct: 120 DIYCSHDTADCWNPKVVQAT 139
>gi|339623948|ref|ZP_08659737.1| rRNA methylase [Fructobacillus fructosus KCTC 3544]
Length = 257
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ ++K R ++ +L+G ++ +A+ A K + ++ + + LP +P VP + +
Sbjct: 18 LATKKGRLEQKTYLLDGWHLVQEAINAKAKFHAIMATEEQMQEHLPDVPHGVPAFEISKE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASL--PLNIVCDNIRDPGNMGSILRVCAAV 120
+ TP GI LP + DPA + L + D I+DPGN+G+++R A
Sbjct: 78 VAAHIAGSKTPQGIFAEVTLPEK---TFDPAYVHDGLWLFLDAIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D+Y KV+RA
Sbjct: 135 GFKGVVLGTGTADLYAPKVVRA 156
>gi|116618817|ref|YP_819188.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
gi|381337126|ref|YP_005174901.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides J18]
gi|116097664|gb|ABJ62815.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
gi|356645092|gb|AET30935.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides J18]
Length = 257
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ ++K R++ +L+G ++ +A+KA K + ++ + LP +P VP + +
Sbjct: 18 LATKKGRQENHTYLLDGLHLVEEAVKAGAKFHAIMATEKQMADYLPNVPHGVPAFEISEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + DP+ + ++ D I+DPGN+G+++R A
Sbjct: 78 VAKHIAGTNTPQGIFAEISLPEK---TFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV G D + KV+RA
Sbjct: 135 GFKGVVLGAGTADAFAPKVVRA 156
>gi|255281427|ref|ZP_05345982.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
14469]
gi|255267915|gb|EET61120.1| putative RNA methyltransferase, TrmH family, group 3
[Marvinbryantia formatexigens DSM 14469]
Length = 260
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLW 67
K R ++G + EG R+ + K +L V S ++ + L + V +
Sbjct: 21 KARREQGLFVAEGVRMYRETPKDDLVKTYVSESFYEKEENRALLQGTELEIVTDRVFAST 80
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD TP GI+ + + A + A PL ++ ++I+DPGN+G+I R A GA ++
Sbjct: 81 SDTKTPQGILCLVRQREYTPAQMLRAENPLLLLLEDIQDPGNLGTIFRAAEAAGATGIIM 140
Query: 128 SRGCVDIYDNKVIRA 142
S G DIY+ K IR+
Sbjct: 141 SSGTADIYNPKTIRS 155
>gi|442314803|ref|YP_007356106.1| rRNA methylase [Riemerella anatipestifer RA-CH-2]
gi|441483726|gb|AGC40412.1| rRNA methylase [Riemerella anatipestifer RA-CH-2]
Length = 248
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 14/143 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD---ILKELPLPEDVPQHRVD 60
+ +K R+K ++EG +I+ + N++++ V+ D L ++ +P +
Sbjct: 19 LDKKKFRQKYNLFLVEGNKIIKELKNTNIEIESVYSVNSDGIEFLADVLVP-------IT 71
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
K ++ S L TP + + LP I + +N+V D ++DPGN+G+I+R+
Sbjct: 72 EKELKKVSFLKTPKDSLAVCYLPTPKITEDNN----INLVLDGLQDPGNLGTIIRLADWF 127
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G Q+VCS VD+Y+ KVI+A
Sbjct: 128 GIEQIVCSTDTVDVYNPKVIQAT 150
>gi|313206009|ref|YP_004045186.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|386322007|ref|YP_006018169.1| rRNA methylase [Riemerella anatipestifer RA-GD]
gi|407452271|ref|YP_006723996.1| rRNA methylase [Riemerella anatipestifer RA-CH-1]
gi|416112026|ref|ZP_11593050.1| tRNA/rRNA methyltransferase [Riemerella anatipestifer RA-YM]
gi|312445325|gb|ADQ81680.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|315022322|gb|EFT35350.1| tRNA/rRNA methyltransferase [Riemerella anatipestifer RA-YM]
gi|325336550|gb|ADZ12824.1| rRNA methylase [Riemerella anatipestifer RA-GD]
gi|403313254|gb|AFR36095.1| rRNA methylase [Riemerella anatipestifer RA-CH-1]
Length = 242
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 14/143 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD---ILKELPLPEDVPQHRVD 60
+ +K R+K ++EG +I+ + N++++ V+ D L ++ +P +
Sbjct: 13 LDKKKFRQKYNLFLVEGNKIIKELKNTNIEIESVYSVNSDGIEFLADVLVP-------IT 65
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
K ++ S L TP + + LP I + +N+V D ++DPGN+G+I+R+
Sbjct: 66 EKELKKVSFLKTPKDSLAVCYLPTPKITEDNN----INLVLDGLQDPGNLGTIIRLADWF 121
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G Q+VCS VD+Y+ KVI+A
Sbjct: 122 GIEQIVCSTDTVDVYNPKVIQAT 144
>gi|225011630|ref|ZP_03702068.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-2A]
gi|225004133|gb|EEG42105.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
MS024-2A]
Length = 239
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 78/145 (53%), Gaps = 16/145 (11%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL-PEDVPQHRV 59
++ +K +K R G + EG++++ + L A+ WD + + P PQ V
Sbjct: 10 ILQLKQKKYRLSTGLFVAEGEKVIEELLSAS----------WDCVYLFSIAPHFHPQSEV 59
Query: 60 -DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
D ++ + TP ++G+F+ P + ++ +++ L + D + DPGN+G+++R+C
Sbjct: 60 IDPSVMKQLTHFKTPSPVLGVFKSP--DLKALSKSNITLAV--DGVSDPGNLGTLIRICD 115
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
G ++CS VD Y++KV++A+
Sbjct: 116 WYGLSDLICSSNTVDCYNSKVVQAS 140
>gi|300778322|ref|ZP_07088180.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
35910]
gi|300503832|gb|EFK34972.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
35910]
Length = 241
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R+K ++EG +I+ + +N K+K + + L D+P +
Sbjct: 13 LDKKKFRQKYNLFLVEGNKIICELFNSNFKVKEILSTDPQKLDRT----DIPVTHISENE 68
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L TP + + L ++ ++ L V D I+DPGN+G+I+R+ G
Sbjct: 69 LKKISFLKTPKDSVAVCYLAEE--KKLEDKNIQL--VLDGIQDPGNLGTIIRLADWFGIE 124
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
QV+CS VD+Y+ KVI+A
Sbjct: 125 QVICSEDTVDVYNPKVIQAT 144
>gi|433655418|ref|YP_007299126.1| rRNA methylase [Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293607|gb|AGB19429.1| rRNA methylase [Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 256
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR---VD 60
+ +K R +K +EGK + +ALK+ ++K V S+ + + DV + R VD
Sbjct: 17 LSEKKYRYEKKLFFVEGKNSVFEALKSGFEIKYVLASE-----DCDIDLDVEKDRLIFVD 71
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ SD VTP I+ + ++P + + + L I+ D ++DPGN+G+I+R A
Sbjct: 72 KGIFKKISDTVTPQMIMAVVKMPDYNVNDLIKED-GLYIILDEVQDPGNLGTIIRSADAF 130
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
V VD+Y+ K +R+
Sbjct: 131 NVDAVFTINNTVDVYNPKALRST 153
>gi|359412510|ref|ZP_09204975.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium sp. DL-VIII]
gi|357171394|gb|EHI99568.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium sp. DL-VIII]
Length = 260
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 11/146 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDY 61
+K RK R K ++EG R++ +A KA + + + ++ D + E L E + +
Sbjct: 18 LKERKNRVKTNKYIIEGFRLVQEAFKAKVDIDYLIVAEDAEDKVVEF-LGEYINDEMKIF 76
Query: 62 K-NIQLWSDLVT---PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
K + L+ +L++ P GI+ + ++ + S ++CD ++DPGN+G+I+R
Sbjct: 77 KISNNLFKELISTENPQGILVVIKMNTMDLKS----DGDFYLLCDKLQDPGNLGTIIRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G ++ ++G VDIY+ K IR+
Sbjct: 133 HAAGVSGIILTKGTVDIYNEKTIRST 158
>gi|325261201|ref|ZP_08127939.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
gi|324032655|gb|EGB93932.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
Length = 257
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
K + R ++G + EG R++ + K +L +++ + E L + Q V +
Sbjct: 18 KKSRIRNQEGVFIAEGSRMVGETPKESL-VRLYVSETYYKKHEEELKKYNRQPEVLTDTV 76
Query: 65 QLW-SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ SD TP GI+ + + + I P +V DN++DPGN+G+I R A G
Sbjct: 77 FAYVSDTKTPQGILAVVRQMEYTMEEITGKGNPHILVLDNLQDPGNLGTIFRTAEAAGVT 136
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++ S CVDIY+ K IR+
Sbjct: 137 GILMSGDCVDIYNPKTIRST 156
>gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
Length = 266
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R ++ +EG + +AL ++ K++ V + D+ E D R+ K + SD
Sbjct: 23 RYEEKLFFVEGLNSVKEALDSDFKVEYVVVGE-DV--EFEFKGDFKLIRIANKLFKKISD 79
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
VTP I+ I +P + + ++ DN++DPGN+G+I+R A GA V
Sbjct: 80 TVTPQKIMAIVRMPVYREEDFIKEE-GVYVIADNVQDPGNLGTIIRTADAFGADAVFTIN 138
Query: 130 GCVDIYDNKVIRAA 143
VDIY+ KV+RA+
Sbjct: 139 NSVDIYNPKVLRAS 152
>gi|374599856|ref|ZP_09672858.1| tRNA/rRNA methyltransferase (SpoU) [Myroides odoratus DSM 2801]
gi|423325017|ref|ZP_17302858.1| hypothetical protein HMPREF9716_02215 [Myroides odoratimimus CIP
103059]
gi|373911326|gb|EHQ43175.1| tRNA/rRNA methyltransferase (SpoU) [Myroides odoratus DSM 2801]
gi|404607026|gb|EKB06560.1| hypothetical protein HMPREF9716_02215 [Myroides odoratimimus CIP
103059]
Length = 246
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 14/143 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH---RVD 60
+ +K R++ + EG +++ + L+++ L ++ + + VP H RV
Sbjct: 13 LHQKKYRKEHQLFIAEGIKVIQELLQSSFVLDHLYVTN-------EMDFGVPAHQVTRVS 65
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+++ S L T P + +F H +AS + D+IRDPGN+G+I+R+C
Sbjct: 66 ADDLKKMSALTTTPNCLAVF----HCLASKTIDFSDWVVALDDIRDPGNLGTIIRLCDWF 121
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G +VCS VD Y+ KVI+A
Sbjct: 122 GISHIVCSSETVDCYNPKVIQAT 144
>gi|167973464|ref|ZP_02555741.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|167974681|ref|ZP_02556958.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
gi|167976160|ref|ZP_02558437.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
gi|167988658|ref|ZP_02570329.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|168363160|ref|ZP_02696330.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|195867662|ref|ZP_03079664.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
gi|198273649|ref|ZP_03206184.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209554556|ref|YP_002284727.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
gi|225550441|ref|ZP_03771390.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
gi|225551107|ref|ZP_03772053.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|171903015|gb|EDT49304.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|184208931|gb|EDU05974.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|188018840|gb|EDU56880.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|188997857|gb|EDU66954.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
gi|195659595|gb|EDX52975.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
gi|195660719|gb|EDX53974.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
gi|198249677|gb|EDY74458.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209542057|gb|ACI60286.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
gi|225378922|gb|EEH01287.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|225379595|gb|EEH01957.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
Length = 257
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 76/143 (53%), Gaps = 12/143 (8%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKL------KMVFFSQWDILKELPLPEDVPQHRVD 60
+K RE ++EG ++L +AL+ + + V+ +++ + + L ++V ++V
Sbjct: 23 KKYREANQLFIIEGFKLLDEALQNQQTIVAIIINERVYDKEFETIFKYTLYDNVQIYKVS 82
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
I+ S + P I+ I ++ D ++ DNI+DPGN+G+ILR C A
Sbjct: 83 ENVIKKLSVNIDPSPILAIVKMKEETCDVNDNV-----LLLDNIQDPGNLGTILRTCFAF 137
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
+QV+ + CVD+Y+ K I+A+
Sbjct: 138 NVKQVIFN-NCVDLYNAKTIKAS 159
>gi|406669619|ref|ZP_11076887.1| hypothetical protein HMPREF9707_00790 [Facklamia ignava CCUG 37419]
gi|405582961|gb|EKB56935.1| hypothetical protein HMPREF9707_00790 [Facklamia ignava CCUG 37419]
Length = 261
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 28/155 (18%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKL------KMVFFSQWDILKELPLPEDVPQH 57
+ + K+R K+ ++EG ++ +ALK + + + + QWD L+ H
Sbjct: 20 LATSKERRKQQKYLVEGTHLVEEALKHQVAMDCLIMTESYYAEQWDHLQT---------H 70
Query: 58 RVDYKNI----QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN-----IVCDNIRDPG 108
+ + L S L P GIF + I + +LPLN ++ D I+DPG
Sbjct: 71 DQCFTPVLIADSLASQLAQTPSPQGIFAV----IEVANDQNLPLNDGNKYLLVDRIQDPG 126
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
N+G+++R A G ++ GCVD+Y++KVIR+
Sbjct: 127 NLGTMIRTADAAGIDAIILGEGCVDLYNDKVIRST 161
>gi|320106654|ref|YP_004182244.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
gi|319925175|gb|ADV82250.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
Length = 264
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 77/139 (55%), Gaps = 6/139 (4%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDYKNIQ 65
+++ +G + +EG ++ +AL++ ++LK +F + ++L +L D+ + + +
Sbjct: 30 RRKLAEGQIAMEGPHLMAEALRSGMELKAIFVREDARELLSQL----DLAEENAVVLSRE 85
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
+++ V GI L P A + S L +V + ++DPGN+G+++R A GA V
Sbjct: 86 VFASAVATESSQGIAALAYPPEARMPKRSDGLFLVLERLQDPGNLGTLVRSAEAFGAAAV 145
Query: 126 VCSRGCVDIYDNKVIRAAA 144
+C G D+++ K +RA+A
Sbjct: 146 LCLPGTADVWNQKALRASA 164
>gi|429743246|ref|ZP_19276817.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 020
str. F0370]
gi|429165964|gb|EKY07981.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 020
str. F0370]
Length = 258
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 19/148 (12%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--------WDILKELPLPEDVPQH 57
S K R + +LEG +L L+ + + VF +Q +L LP PE+
Sbjct: 21 SAKYRRECRQTVLEGAHLLDALLQTGAQPQQVFIAQSRLHTPETQSLLSRLP-PENTAA- 78
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELP--AHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V+ + + S L GI+ + E+P A P+ S D +V + I+DPGN+G+ILR
Sbjct: 79 -VEDRLLAKASALSDGGGILSLVEIPETAAPLQSGD------CVVLERIQDPGNIGTILR 131
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
AA G + VV R C D++ KV+RAA
Sbjct: 132 SAAAAGVKNVVLGRDCADVWSPKVLRAA 159
>gi|392948650|ref|ZP_10314255.1| rRNA methylase, SpoU family [Lactobacillus pentosus KCA1]
gi|392436155|gb|EIW14074.1| rRNA methylase, SpoU family [Lactobacillus pentosus KCA1]
Length = 255
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE---------LPLPEDV 54
++++K R+++G +L+G ++ +A+KA++ ++ + + + E + + E+V
Sbjct: 18 LQTKKGRKQQGQYLLDGWHLVNEAVKAHVAIQTLLITSKQLATEPDLTHFPAVIEISEEV 77
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN---IVCDNIRDPGNMG 111
+H S VTP G+ + LPA D A L L ++ DN++DPGN+G
Sbjct: 78 AKH---------ISATVTPQGVFAVATLPA---VVDDLAQLDLTRPWLLLDNVQDPGNIG 125
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+++R A G V G VDI+ KV R+
Sbjct: 126 TMVRTADAAGFAGVAFGTGTVDIHQPKVERS 156
>gi|261879397|ref|ZP_06005824.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361]
gi|270333965|gb|EFA44751.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361]
Length = 273
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYKNI 64
+K R+K+G + EG +++ D L L ++ S+W + + + V V +
Sbjct: 31 KKNRDKEGLFVAEGPKVVADLLAVASPLHLIATSEWFAGHRMEMNQWGKVKISEVTEDEL 90
Query: 65 QLWSDLVTPPGIIGIFELPAHPI--ASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S TP +IG+F +P + D L + D ++DPGN+G+I+R+ G
Sbjct: 91 RKASFQKTPQQVIGVFPIPETEAQDTATDMPGRQLCLALDGVQDPGNLGTIIRIADWFGI 150
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
V CS D Y+ KV++A
Sbjct: 151 EHVYCSEDTADAYNPKVVQAT 171
>gi|332982296|ref|YP_004463737.1| tRNA/rRNA methyltransferase SpoU [Mahella australiensis 50-1 BON]
gi|332699974|gb|AEE96915.1| tRNA/rRNA methyltransferase (SpoU) [Mahella australiensis 50-1 BON]
Length = 261
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW---DILKELPLPEDVPQHRVD 60
+ S R+K G +EG +++ +A+KAN + + +S L +L + D+ V
Sbjct: 16 LASSHGRKKSGLYFIEGAKLIEEAIKANEDILFIVYSSDFGDSTLLKLIIDRDIDNFSVL 75
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+D TP G++ + + I L +V D ++DPGN+G+++R A+
Sbjct: 76 PDVFVNIADTATPQGVLAVLKQQQRDWHEIMMLEHCLLLVLDAVQDPGNVGTMIRTADAM 135
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G V+ RG D Y+ KV+RAA
Sbjct: 136 GFSAVIAGRGTADQYNPKVLRAA 158
>gi|294673532|ref|YP_003574148.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
gi|294471919|gb|ADE81308.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
Length = 246
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-QWDILKELPLPEDVPQHRVDYK 62
++ +K R+++G + EG +++ D LKA K +F + +W + +V +
Sbjct: 13 LELKKFRKQEGLFIAEGHKVVGDLLKAGYTPKQLFATAEWIAANPVAGAIEVTNDELTKL 72
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++Q P ++ +F +P + P++ L+I+ DN++DPGN+G+I+R+ G
Sbjct: 73 SLQQH-----PQQVLALFPIPTPQHQT--PSTQQLSILLDNVQDPGNLGTIIRIADWFGI 125
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ CS G VD ++ KV++A
Sbjct: 126 DTIFCSEGTVDAWNPKVVQAT 146
>gi|260778120|ref|ZP_05887013.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
BAA-450]
gi|260606133|gb|EEX32418.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
BAA-450]
Length = 245
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ + + L++K +F + + D +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELVNSELQVKQIFATGEFLTANQSQLNDFECIEASLDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P+ + P + L I D + DPGN+G+I+RV G +
Sbjct: 73 LTKASTLVSNNAAIAVVEIPSVKV----PQAQGLIIALDGVSDPGNLGTIIRVADWYGIK 128
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V S+ C D Y+ K I A
Sbjct: 129 HIVASKDCADPYNPKTISAT 148
>gi|366089243|ref|ZP_09455716.1| 23S rRNA methyltransferase [Lactobacillus acidipiscis KCTC 13900]
Length = 256
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP--LPEDVPQHRVDY 61
++++K R ++G +LEG +L +ALKAN + + + + P +PE+V + +
Sbjct: 18 LQTKKGRSRQGKYLLEGWHLLDEALKANENISEIMITPAALEHANPQEMPEEVDIYEISD 77
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN-IVCDNIRDPGNMGSILRVCAAV 120
+ Q S +P GI + I P + + D I+DPGN+G+++R A
Sbjct: 78 EVAQQLSATPSPQGIFATVIIG--QTKEIIPEKMTGAWLFLDTIQDPGNVGTMVRTADAA 135
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G + VV S G VD+Y K++R+
Sbjct: 136 GFKGVVLSEGSVDMYQPKLVRS 157
>gi|260588913|ref|ZP_05854826.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
20583]
gi|260540692|gb|EEX21261.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
20583]
Length = 269
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 13/151 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----------LPLPED 53
+K K R ++ +EG ++ + K+ +L+ V+ SQ KE + + E
Sbjct: 17 LKKAKVRREEQVFAVEGIKMFSEVPKS--RLQKVYLSQSFARKEECEKILLEKGISIEET 74
Query: 54 VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGS 112
VD K + SD VTP G++ + ++ + ++ I PL ++ ++++DPGN+G+
Sbjct: 75 EYVELVDDKIFKNLSDTVTPQGVLCLVKMENYTLSEILSGEENPLLMILEDLQDPGNLGT 134
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
ILR G V+ SR VD+++ KVIR+
Sbjct: 135 ILRTGEGAGVTGVIMSRTSVDVFNPKVIRST 165
>gi|374578843|ref|ZP_09651937.1| rRNA methylase [Desulfosporosinus youngiae DSM 17734]
gi|374414925|gb|EHQ87360.1| rRNA methylase [Desulfosporosinus youngiae DSM 17734]
Length = 264
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF------SQWDILKELPLPEDV 54
+V ++ RK RE+ ++EG R + + + N +K V+ ++W L + +
Sbjct: 13 VVSLQRRKAREQAQLFVIEGWRFVEEGVLRNAPIKKVYVCLEREPAEWQPLLRKLIERGI 72
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
P VD + ++ P GI+ + + + + + ++ D I+DPGN+G+IL
Sbjct: 73 PFEEVDERVLRKMCATEEPQGILAVVRQANYSWSDLHINPEAVMLILDGIQDPGNLGTIL 132
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G + V + G VD+Y+ KV+R+
Sbjct: 133 RTALASGVQYVCLTPGTVDLYNPKVLRST 161
>gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
Length = 287
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV---- 59
+ +K R ++G M EG +++IDAL K++ + FS+ I E+ H V
Sbjct: 31 LSQKKNRNREGLFMAEGLKLVIDALNLGWKIQTLIFSKSKISN--TAIENTAAHTVANGG 88
Query: 60 -----DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
K ++ + P +IGIF+ + I + + + D +RDPGN+G+I+
Sbjct: 89 LVIKASQKVMESIARRDNPQTVIGIFKQQWQSLEMITGQAEDVYVALDRVRDPGNLGTII 148
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA+ V+ D + + +RA
Sbjct: 149 RTADAVGAKGVILIGETTDPFSPETVRAT 177
>gi|90407127|ref|ZP_01215315.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
gi|90311703|gb|EAS39800.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
Length = 247
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 79/144 (54%), Gaps = 6/144 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE---LPLPEDVPQ-HRV 59
++ +KQR+K+G +++G++ + + L+++ ++ VF + I K L + VP V
Sbjct: 13 LEQKKQRKKQGLFIVQGEKNVAELLRSDFVIEQVFATSTYINKNNTLLSTHQLVPLCTEV 72
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
++ L++ ++ + + + +I AS L +V D + DPGN+G+I+RV
Sbjct: 73 SSDELKKMGTLLSNNSVLVVAKCKTATLPTI--ASQELILVLDQVGDPGNLGTIIRVADW 130
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G + +VCS C D Y+ KVI A+
Sbjct: 131 YGVKNIVCSPDCADFYNPKVIAAS 154
>gi|392989008|ref|YP_006487601.1| RNA methyltransferase [Enterococcus hirae ATCC 9790]
gi|392336428|gb|AFM70710.1| RNA methyltransferase [Enterococcus hirae ATCC 9790]
Length = 254
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 15/140 (10%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WD--ILKELPLPEDVPQHRVDYK 62
RE+ G +LEG ++ +A+ ++ K+K + ++ W+ + K L D+P V +
Sbjct: 24 REETGEYLLEGFHLVEEAVASHAKVKEILITEKGLEEWEEWLKKHL----DIPCTLVTNE 79
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ + SDL TP GI+ + + + L L DN++DPGN+G+++R A G
Sbjct: 80 VMAVVSDLPTPQGILAVMLYEKVNMPELTGGWLLL----DNVQDPGNVGTMIRTADAFGL 135
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
VV +G DIY KV+R+
Sbjct: 136 SGVVLGKGSADIYSTKVLRS 155
>gi|333919173|ref|YP_004492754.1| tRNA/rRNA methyltransferase [Amycolicicoccus subflavus DQS3-9A1]
gi|333481394|gb|AEF39954.1| tRNA/rRNA methyltransferase [Amycolicicoccus subflavus DQS3-9A1]
Length = 271
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 9 QREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-----VPQHRVDYKN 63
+R K + EG + AL+ L +++ F S ++K + D VP +V +
Sbjct: 11 ERRKTAKFLAEGSNAVGGALENGLAIEL-FSSAEGLVKHAKVISDARRAAVPVWQVSDRV 69
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASID---PASLPLNIVCDNIRDPGNMGSILRVCAAV 120
Q S+ VTP GI+ + P H +AS+ PA + ++ D + DPGN G+I+RV A
Sbjct: 70 AQALSETVTPQGIVAVCHQPVHSLASLLDALPAEAFVAVLID-VNDPGNAGAIIRVADAA 128
Query: 121 GARQVVCSRGCVDIYDNKVIRAAA 144
GA V+ VD + K IRA+A
Sbjct: 129 GAHGVILVGDAVDPCNGKAIRASA 152
>gi|334880699|emb|CCB81467.1| rRNA methylase [Lactobacillus pentosus MP-10]
Length = 255
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE---------LPLPEDV 54
++++K R+++G +L+G ++ +A+KA++ ++ + + + E + + E+V
Sbjct: 18 LQTKKGRKQQGQYLLDGWHLVNEAVKAHVAIQTLLITSKQLATEPDLTHFPAVIEISEEV 77
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN---IVCDNIRDPGNMG 111
+H S VTP G+ + LPA D A L L ++ DN++DPGN+G
Sbjct: 78 AKH---------ISATVTPQGVFAVATLPA---VVEDLAQLDLTRPWLLLDNVQDPGNIG 125
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+++R A G V G VDI+ KV R+
Sbjct: 126 TMVRTADAAGFAGVAFGTGTVDIHQPKVERS 156
>gi|332291128|ref|YP_004429737.1| tRNA/rRNA methyltransferase SpoU [Krokinobacter sp. 4H-3-7-5]
gi|332169214|gb|AEE18469.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter sp. 4H-3-7-5]
Length = 246
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 15/146 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVF------FSQWDILKELPLPEDVPQH 57
+ +K R+++ + EG +++ + L ++L+L ++ F++ K + E+V
Sbjct: 13 LGQKKYRQRERVFVAEGIKVVHELLNSDLELVELYAEDVSSFAKALQNKNQAIVEEVST- 71
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
D K I L T + F +P A +D + L L + D++RDPGN+G+I+R+C
Sbjct: 72 -ADLKKITF---LKTTQKAVATFRMP--EAAQLDRSGLTL--LLDDVRDPGNLGTIIRLC 123
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
G +Q+VCS G VD Y+ KV++A
Sbjct: 124 DWFGIKQLVCSIGTVDCYNPKVVQAT 149
>gi|228470153|ref|ZP_04055062.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
gi|228308291|gb|EEK17146.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
Length = 262
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 7/86 (8%)
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPA--HPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
D K I+ S L +P ++ + E+P P A + P ++ D+++DPGN+G++LR C
Sbjct: 81 DPKQIERVSGLKSPRPLLALCEIPTIEAPQALLQP-----TLLLDDVQDPGNVGTLLRTC 135
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
+G RQV+C+ GC DIY KV++A
Sbjct: 136 DWMGIRQVLCTEGCADIYSPKVLQAT 161
>gi|332300622|ref|YP_004442543.1| tRNA/rRNA methyltransferase SpoU [Porphyromonas asaccharolytica DSM
20707]
gi|332177685|gb|AEE13375.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
DSM 20707]
Length = 262
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 82/142 (57%), Gaps = 13/142 (9%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL--PLPEDVPQHRV--DYKN 63
K R++ + EG++++ + L A + +++ ++ +++K L PE + + + D K
Sbjct: 27 KHRKQSNLFIAEGEKLIGEMLPA-YQCQLLVGTE-ELVKPLLGRCPESIAEAVILPDPKQ 84
Query: 64 IQLWSDLVTPPGIIGIFELP--AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
I+ S L +P ++ + E+P P A P ++ D+++DPGN+G++LR C +G
Sbjct: 85 IERVSGLKSPRPLLALCEIPIIEAPQALQQP-----TLLLDDVQDPGNVGTLLRTCDWMG 139
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
RQV+C+ GC D+Y KV++A
Sbjct: 140 IRQVLCTEGCADVYSPKVLQAT 161
>gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
gi|158447527|gb|EDP24522.1| RNA methyltransferase, TrmH family [Parvimonas micra ATCC 33270]
Length = 261
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 19/144 (13%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMV-----FFSQWDILKELPLPEDVPQHRVDY 61
+K R+K +LEGK++L +AL NL ++ + F ++ KE L + + +
Sbjct: 32 KKNRDKYKLFLLEGKKLLSEALNENLDIENIICTEKFVENFE-FKENFLDKVIILSEKLF 90
Query: 62 KNIQLWSDLVTPPGIIGIFE-LPAHPIASIDPASLPLNIVC-DNIRDPGNMGSILRVCAA 119
KN+ ++L G+I I + I+S NI+C +N+ DPGN G+I+R A
Sbjct: 91 KNL---TELTNSEGVITIVNYIEEKKISS-------KNIICLENVSDPGNFGTIIRTANA 140
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G ++ + CVD Y++KV+RA
Sbjct: 141 FGINDIL-TINCVDKYNSKVLRAT 163
>gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
Length = 262
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDV--PQHRVDYK 62
K + R++KG ++EG R + + + A +++ V+ S+ K E + P +
Sbjct: 18 KKSRLRDEKGIFLVEGPR-MTEEIPAE-RIEKVYASESFAKKNKEFSEKLQAPVELLTDT 75
Query: 63 NIQLWSDLVTPPGIIGI---FELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
SD TP GI+ I + + + P +V DN++DPGN+G+I R A
Sbjct: 76 VFAYVSDTKTPQGILAIVKRLNYTMNDLMQVKNQKAPHLVVLDNLQDPGNLGTIFRTAEA 135
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G ++ S+ CVD+Y+ KVIR+
Sbjct: 136 AGVTGILLSKDCVDVYNPKVIRST 159
>gi|433647796|ref|YP_007292798.1| rRNA methylase [Mycobacterium smegmatis JS623]
gi|433297573|gb|AGB23393.1| rRNA methylase [Mycobacterium smegmatis JS623]
Length = 248
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R + + EG ++ AL+ L + VF ++ + + L DVP H V + + SD
Sbjct: 13 RRRAARFLAEGSNLVEAALRCGL-VSEVFATESAMNRFGALLTDVPVHLVTDRAAKALSD 71
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
VTP G++ + +P + + + L V I +PGN G+++R+ A+GA VV +
Sbjct: 72 TVTPVGLVAVCSVPETTLDDVLADTPRLVAVAVEISEPGNAGTLIRIADAMGADAVVLAG 131
Query: 130 GCVDIYDNKVIRAAA 144
VD Y+ K +RA+A
Sbjct: 132 HSVDPYNGKCLRASA 146
>gi|397491909|ref|XP_003816879.1| PREDICTED: RNA methyltransferase-like protein 1 [Pan paniscus]
Length = 224
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 39/50 (78%)
Query: 94 SLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
SLPL ++CDN+RDPGN+G+ILR A G +V+ ++GCVD ++ KV+RA
Sbjct: 11 SLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 60
>gi|22299511|ref|NP_682758.1| tRNA/rRNA methyltransferase [Thermosynechococcus elongatus BP-1]
gi|22295694|dbj|BAC09520.1| tll1968 [Thermosynechococcus elongatus BP-1]
Length = 259
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 81/147 (55%), Gaps = 12/147 (8%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
K ++ ++G L+LEG ++ +AL + L +V ++ K+ P HR D + +
Sbjct: 16 KLHHRKYRQGHLLLEGTHLIQEALASGYHLSVVCYTSAWQAKQSPTFWQRLLHRSD-RAV 74
Query: 65 QLWSDLV-------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
++ +++ TP G++ + + P+ ++ SL L +V ++DPGN+G+I+R
Sbjct: 75 EVSEEVLAALCTTTTPDGVVAVADYT--PLPTLPLQSLGLCLV--TLQDPGNLGTIIRTA 130
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAAA 144
AAVG ++ S CVD+ KV+RA+A
Sbjct: 131 AAVGVEGLLLSADCVDMTHPKVLRASA 157
>gi|189459414|ref|ZP_03008199.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
gi|189433871|gb|EDV02856.1| RNA methyltransferase, TrmH family [Bacteroides coprocola DSM
17136]
Length = 257
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 8/145 (5%)
Query: 3 YMKS---RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV 59
Y++S +K R+++ + EG +++ D + +V +W L+ P + V
Sbjct: 9 YIRSLELKKNRKEEHAFLAEGNKLVNDLINHFSCQLLVATKEW--LQSHPHLQAAEIIEV 66
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPI-ASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
++ + S L TP ++ +FE P + A++ SL L + D+++DPGN+G+I+R+
Sbjct: 67 THEELSRASLLKTPQEVLAVFEQPHYEFDANVTEQSLCLAL--DDVQDPGNLGTIIRIAD 124
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
G + CS G D+Y+ K I+A
Sbjct: 125 WFGIEHIFCSSGTADVYNPKTIQAT 149
>gi|84385230|ref|ZP_00988262.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
gi|84379827|gb|EAP96678.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
Length = 244
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPE-DVPQHRVD 60
+ +KQR+ G +++G++ +++ ++L +K VF + D L E L E D + +D
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELFNSDLVVKNVF-ATADFLSENHASLFEFDCVEASLD 71
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ S LV+ I + E+P + P + L I D + DPGN+G+I+RV
Sbjct: 72 --DLTKASTLVSNNAAIAVVEIPTFEL----PEATGLMIALDGVSDPGNLGTIIRVADWY 125
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + +V S C D Y+ K I A
Sbjct: 126 GIKHIVASSDCADPYNPKTISAT 148
>gi|336398465|ref|ZP_08579265.1| tRNA/rRNA methyltransferase (SpoU) [Prevotella multisaccharivorax
DSM 17128]
gi|336068201|gb|EGN56835.1| tRNA/rRNA methyltransferase (SpoU) [Prevotella multisaccharivorax
DSM 17128]
Length = 264
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 17/153 (11%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K R K G + EG +++ D L+ + K+V ++ I + L D+ +VD +
Sbjct: 13 LDNKKARRKSGVFVAEGPKVVGDLLQKE-QAKIVIATEDWITENCKLITDIEVIKVDAEE 71
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASL-------------PLNIVCDNIRDPGNM 110
++ S L P ++ +F LP DP +L L I D ++DPGN+
Sbjct: 72 LRKASLLQHPQQVLALFPLPQE---KTDPQALLPLLVGQRNGGREALVIALDGVQDPGNL 128
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+I+RV G V+CS VD Y KVI+A
Sbjct: 129 GTIIRVADWFGIEDVICSLSTVDAYSPKVIQAT 161
>gi|383824771|ref|ZP_09979943.1| TsnR protein [Mycobacterium xenopi RIVM700367]
gi|383336837|gb|EID15232.1| TsnR protein [Mycobacterium xenopi RIVM700367]
Length = 258
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 24 LIDALKANLKLKMVFFSQWDILK--ELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFE 81
L++A ++ +F ++ + EL +DVP H V+ + + S+ VTP G++ + E
Sbjct: 34 LVEAASRRGLVREIFVTEAAARRHGELLHTQDVPVHLVNDRAAKALSETVTPAGLVAVCE 93
Query: 82 LPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIR 141
LPA + + + L V I +PGN GS++R+ A+GA VV VD Y+ K +R
Sbjct: 94 LPATRLEEVLAGNPALIAVAVEIGEPGNAGSLIRIADALGAAAVVLLGHSVDPYNGKCLR 153
Query: 142 AAA 144
A+A
Sbjct: 154 ASA 156
>gi|384438449|ref|YP_005653173.1| tRNA/rRNA methyltransferase [Thermus sp. CCB_US3_UF1]
gi|359289582|gb|AEV15099.1| tRNA/rRNA methyltransferase [Thermus sp. CCB_US3_UF1]
Length = 257
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+ +K R++RE+ G ++EG+R + AL A L+L + + ++ L P +
Sbjct: 14 LAALKERRERERAGLFLVEGRREVARALGAGLELYTLLLGPKALPEDRLLAGPAPVLELS 73
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ ++ S PP +IG+F LP P + + ++ + PGN+G+ILR A
Sbjct: 74 QEAMERVSLRENPPPLIGVFRLPQGRPLPPLPEAPLVLVLL-GVEKPGNLGAILRSAEAA 132
Query: 121 GARQVVCSRGCVDIYDNKVIR 141
GA V+ + G VD+Y +VIR
Sbjct: 133 GADLVLVAEG-VDLYSPQVIR 152
>gi|417926079|ref|ZP_12569490.1| RNA methyltransferase, TrmH family [Finegoldia magna
SY403409CC001050417]
gi|341590300|gb|EGS33544.1| RNA methyltransferase, TrmH family [Finegoldia magna
SY403409CC001050417]
Length = 243
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW-DILKELPLPEDVPQHRVDYKNIQ 65
+K R+K ++EG ++ +A+K+NL +K V + D L E D K
Sbjct: 19 KKYRQKYNEFVIEGYKLYQEAIKSNLNIKQVIVREGEDFLDECVY--------FDSKTFN 70
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
S++ P GII + D + +NI DPGN+G+I+R A ++
Sbjct: 71 SLSEMNNPEGIICVVSFIEQKDVKSDQI-----LFLENINDPGNLGTIIRSAEAFCYNKI 125
Query: 126 VCSRGCVDIYDNKVIRAA 143
V S DIY++K IR+A
Sbjct: 126 VLSNNSCDIYNSKTIRSA 143
>gi|375141700|ref|YP_005002349.1| rRNA methylase [Mycobacterium rhodesiae NBB3]
gi|359822321|gb|AEV75134.1| rRNA methylase [Mycobacterium rhodesiae NBB3]
Length = 249
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R + + EG ++ AL+ L + VF ++ + L DV H V + + SD
Sbjct: 13 RRRAARFLAEGPNLVEAALRRGL-VSEVFVTEAAQARFASLLTDVQVHVVTERAAKALSD 71
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
VTP G++ + +P + + S L V I +PGN G+++RV A+GA VV +
Sbjct: 72 TVTPVGLVAVCSVPETSLDDVLAGSPRLLAVAAEISEPGNAGTLIRVADAMGADAVVLAG 131
Query: 130 GCVDIYDNKVIRAAA 144
VD Y+ K +RA+A
Sbjct: 132 HSVDPYNGKCLRASA 146
>gi|383753784|ref|YP_005432687.1| putative RNA methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365836|dbj|BAL82664.1| putative RNA methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 267
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW--------DILKELPLPEDVP 55
+K RKQREK G + EG R+ A +++ + + D+ ++L VP
Sbjct: 18 LKQRKQREKTGLFVAEGIRLCEMAAESDWSISYGLLTGQLTSQPRGRDLTEKLS-ARGVP 76
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFE-----LPAHPIASIDPASLPLNIVCDNIRDPGNM 110
+ V + TP GI+ + E LP+ PL +V D ++DPGN
Sbjct: 77 LYEVPEHIFAKAAGTDTPQGILLVMESKNPSLPSQKAGR----EKPLYVVMDGVQDPGNA 132
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
G+I+R AVGA V+ +G VD + +KV+R+
Sbjct: 133 GTIIRTADAVGADGVIMLKGSVDAFADKVVRS 164
>gi|120553328|ref|YP_957679.1| tRNA/rRNA methyltransferase SpoU [Marinobacter aquaeolei VT8]
gi|120323177|gb|ABM17492.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
Length = 242
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK-ELPLPEDVPQHRVDYK 62
+ +K R+ G ++EG+ ++++ KA ++ +Q + P P+H + +
Sbjct: 9 LHQKKYRQSFGQFLVEGEHLVLELEKAAKQVPHWRNAQLYVTSAHEHWPSPWPKHVISDR 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ SD TP GI+ + LP P + AS + ++DPGN+G+ILR A G
Sbjct: 69 QMAQLSDTRTPQGILAVVPLP--PATRGESASREKALYLHEVQDPGNLGTILRTLAWFGG 126
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ + S G VD ++ KV+RA+
Sbjct: 127 FRCLLSPGSVDPFNPKVVRAS 147
>gi|41407453|ref|NP_960289.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
gi|417750644|ref|ZP_12398999.1| rRNA methylase [Mycobacterium avium subsp. paratuberculosis S397]
gi|440776954|ref|ZP_20955783.1| TsnR [Mycobacterium avium subsp. paratuberculosis S5]
gi|41395805|gb|AAS03672.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336457807|gb|EGO36801.1| rRNA methylase [Mycobacterium avium subsp. paratuberculosis S397]
gi|436722942|gb|ELP46828.1| TsnR [Mycobacterium avium subsp. paratuberculosis S5]
Length = 263
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL--PEDVPQHRVDYKNIQLW 67
R + + EG L++A ++ VF ++ + PL D P H V + +
Sbjct: 21 RRRAARFLAEGSN-LVEAAAGRGLVRDVFVTEAAQQRYAPLLAALDCPVHLVTERAAKAL 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + +LPA + + S L V I +PGN G+++R+ A+GA V+
Sbjct: 80 SDTVTPAGLVAVCDLPATGLRDVLAGSPRLIAVAVQISEPGNAGTLIRLADAMGAAGVLL 139
Query: 128 SRGCVDIYDNKVIRAAA 144
+ VD Y+ K +RA+A
Sbjct: 140 AGHSVDPYNGKCLRASA 156
>gi|218676911|ref|YP_002395730.1| rRNA methylase [Vibrio splendidus LGP32]
gi|218325179|emb|CAV27085.1| rRNA methylase [Vibrio splendidus LGP32]
Length = 244
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPE-DVPQHRVD 60
+ +KQR+ G +++G++ +++ ++L +K VF + D L E L E D + +D
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELFNSDLVVKNVF-ATADFLSENHASLFEFDCVEASLD 71
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ S LV+ I + E+P + P + L I D + DPGN+G+I+RV
Sbjct: 72 --DLTKASTLVSNNAAIAVVEIPTFEL----PKATGLMIALDGVSDPGNLGTIIRVADWY 125
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + +V S C D Y+ K I A
Sbjct: 126 GIKHIVASSDCADPYNPKTISAT 148
>gi|410658616|ref|YP_006910987.1| hypothetical protein DHBDCA_p1975 [Dehalobacter sp. DCA]
gi|410661605|ref|YP_006913976.1| tRNA/rRNA methyltransferase (SpoU) [Dehalobacter sp. CF]
gi|409020971|gb|AFV03002.1| hypothetical protein DHBDCA_p1975 [Dehalobacter sp. DCA]
gi|409023961|gb|AFV05991.1| tRNA/rRNA methyltransferase (SpoU) [Dehalobacter sp. CF]
Length = 274
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE-------- 52
+V + +K R++ ++EGKR + +A+ +LK V+++ D E P+
Sbjct: 13 VVSLHDKKGRKEYREFLVEGKRFVQEAILRQAQLKKVYYTAQDAAAEPSDPQYSLNISGL 72
Query: 53 -------DVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIR 105
+ V ++ S P GI+GI I + +V D I+
Sbjct: 73 VTEIRALGIEAEEVSEAVMRKMSATEAPQGILGIIRKNEFDWQDIKVRKDTILLVVDGIQ 132
Query: 106 DPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
DPGN+G+ILR A +Q++ ++ VD+Y+ KV+R++
Sbjct: 133 DPGNLGTILRTALAADVKQIILTKKTVDLYNPKVLRSS 170
>gi|86145741|ref|ZP_01064070.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
gi|85836440|gb|EAQ54569.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
Length = 244
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPE-DVPQHRVD 60
+ +KQR+ G +++G++ +++ ++L +K VF + D L E L E D + +D
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELFNSDLVVKNVF-ATADFLSENHASLFEFDCVEASLD 71
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ S LV+ I + E+P + P + L I D + DPGN+G+I+RV
Sbjct: 72 --DLTKASTLVSNNAAIAVVEIPTFEL----PKATGLMIALDGVSDPGNLGTIIRVADWY 125
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + +V S C D Y+ K I A
Sbjct: 126 GIKHIVASSDCADPYNPKTISAT 148
>gi|62289126|ref|YP_220919.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
gi|62195258|gb|AAX73558.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
9-941]
Length = 297
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 25/153 (16%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----------------LPL 50
+K R+++G + EG +++IDAL+ + ++K + F++ + L +
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVATRTFAKGGLVLEV 106
Query: 51 PEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNM 110
E V N+Q+ + G+FE H +A + P + + D +RDPGN+
Sbjct: 107 TEKVISAITRRDNLQM---------VAGVFEQQYHQLAGLKPKGNDVYVALDRVRDPGNL 157
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+++R AVGA+ V+ D Y + +RA
Sbjct: 158 GTVIRTADAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|114706460|ref|ZP_01439362.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
gi|114538321|gb|EAU41443.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
Length = 284
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R++ G + EG +++IDAL A +++ + ++ + H+ + + L
Sbjct: 38 KKHRDETGLFLAEGLKLVIDALDAGWEIETLVVAR-------AAQDSALLHKTASRTVAL 90
Query: 67 WSDLV--------------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGS 112
+DL+ P +G+F P+ + P + + D +RDPGN+G+
Sbjct: 91 GADLIEANHKVLEAITRRDNPQNAVGVFRKKTVPLERLAPKPNEVLVALDRVRDPGNLGT 150
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+LR AVGA+ VV VD + + +RA
Sbjct: 151 VLRTADAVGAKGVVLVGETVDPFSLEAVRA 180
>gi|253580955|ref|ZP_04858217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847797|gb|EES75765.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 257
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Query: 8 KQREKKGWLMLEGKRILIDALK---ANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
K R ++G + EG+++ +A + + + + +++ ++ E +P V
Sbjct: 21 KARREQGLFVAEGRKMFGEAPRDWISKVYVSEALSGDAELMAQV---EKLPYEIVTDSVF 77
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
+ SD TP GI+ + + P++ + I PL ++ ++++DPGN G+ILR G
Sbjct: 78 RQMSDTQTPQGIMTVLKKPSYIMEDILGGENPLVMILEDLQDPGNAGTILRTGEGAGVSG 137
Query: 125 VVCSRGCVDIYDNKVIRAA 143
V+ ++ CVDI + KVIR+
Sbjct: 138 VLLTKTCVDITNPKVIRST 156
>gi|407068783|ref|ZP_11099621.1| RNA methyltransferase, TrmH family [Vibrio cyclitrophicus ZF14]
Length = 244
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPE-DVPQHRVD 60
+ +KQR+ G +++G++ +++ ++L +K VF + D L E L E D + +D
Sbjct: 13 LGQKKQRKAHGQFLVQGEKNVLELFNSDLVVKNVF-ATADFLSENHASLFEFDCVEASLD 71
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ S LV+ I + E+P + P + L I D + DPGN+G+I+RV
Sbjct: 72 --DLTKASTLVSNNAAIAVVEIPTFEL----PKATGLMIALDGVSDPGNLGTIIRVADWY 125
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + +V S C D Y+ K I A
Sbjct: 126 GIKHIVASSDCADPYNPKTISAT 148
>gi|118586223|ref|ZP_01543687.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
gi|118433339|gb|EAV40041.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
Length = 255
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL-PLPEDVPQHRVDYK 62
+++ K REK G ML+G ++ DAL ++ V ++ + + L +P+ VP +V +
Sbjct: 18 LQTLKGREKSGTYMLDGWHLVQDALNQAAPIQAVIATEEQMDQHLIDVPQGVPAFQVSEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + S DP + ++ D I+DPGN+G+++R A
Sbjct: 78 VARHIAKTNTPQGIFAQTSLPNN---SFDPKYVHNGSWLLLDRIQDPGNVGTLIRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G V S+ D ++ KV+RA
Sbjct: 135 GFSGVALSKESADPFNPKVVRA 156
>gi|82699065|ref|YP_413639.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
Abortus 2308]
gi|189023403|ref|YP_001934171.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus S19]
gi|237814620|ref|ZP_04593618.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
gi|260546424|ref|ZP_05822164.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
gi|260759230|ref|ZP_05871578.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260760952|ref|ZP_05873295.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|376271939|ref|YP_005150517.1| tRNA/rRNA methyltransferase [Brucella abortus A13334]
gi|423167708|ref|ZP_17154411.1| hypothetical protein M17_01398 [Brucella abortus bv. 1 str. NI435a]
gi|423169916|ref|ZP_17156591.1| hypothetical protein M19_00449 [Brucella abortus bv. 1 str. NI474]
gi|423175093|ref|ZP_17161762.1| hypothetical protein M1A_02489 [Brucella abortus bv. 1 str. NI486]
gi|423178056|ref|ZP_17164701.1| hypothetical protein M1E_02297 [Brucella abortus bv. 1 str. NI488]
gi|423179349|ref|ZP_17165990.1| hypothetical protein M1G_00449 [Brucella abortus bv. 1 str. NI010]
gi|423182479|ref|ZP_17169116.1| hypothetical protein M1I_00448 [Brucella abortus bv. 1 str. NI016]
gi|423186578|ref|ZP_17173192.1| hypothetical protein M1K_01396 [Brucella abortus bv. 1 str. NI021]
gi|423190984|ref|ZP_17177592.1| hypothetical protein M1M_02664 [Brucella abortus bv. 1 str. NI259]
gi|82615166|emb|CAJ10105.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
Abortus 2308]
gi|189018975|gb|ACD71697.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
gi|237789457|gb|EEP63667.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
gi|260096531|gb|EEW80407.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
gi|260669548|gb|EEX56488.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260671384|gb|EEX58205.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|363399545|gb|AEW16515.1| tRNA/rRNA methyltransferase [Brucella abortus A13334]
gi|374537324|gb|EHR08837.1| hypothetical protein M1A_02489 [Brucella abortus bv. 1 str. NI486]
gi|374541142|gb|EHR12641.1| hypothetical protein M17_01398 [Brucella abortus bv. 1 str. NI435a]
gi|374542152|gb|EHR13641.1| hypothetical protein M19_00449 [Brucella abortus bv. 1 str. NI474]
gi|374547540|gb|EHR18994.1| hypothetical protein M1E_02297 [Brucella abortus bv. 1 str. NI488]
gi|374550868|gb|EHR22303.1| hypothetical protein M1G_00449 [Brucella abortus bv. 1 str. NI010]
gi|374551325|gb|EHR22759.1| hypothetical protein M1I_00448 [Brucella abortus bv. 1 str. NI016]
gi|374553674|gb|EHR25088.1| hypothetical protein M1M_02664 [Brucella abortus bv. 1 str. NI259]
gi|374558257|gb|EHR29651.1| hypothetical protein M1K_01396 [Brucella abortus bv. 1 str. NI021]
Length = 297
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 25/153 (16%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----------------LPL 50
+K R+++G + EG +++IDAL+ + ++K + F++ + L +
Sbjct: 47 KKFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVAARTFAKGGLVLEV 106
Query: 51 PEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNM 110
E V N+Q+ + G+FE H +A + P + + D +RDPGN+
Sbjct: 107 TEKVISAITRRDNLQM---------VAGVFEQQYHQLAGLKPKGNDVYVALDRVRDPGNL 157
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+++R AVGA+ V+ D Y + +RA
Sbjct: 158 GTVIRTADAVGAKGVILIGDTTDPYSLETVRAT 190
>gi|291295473|ref|YP_003506871.1| tRNA/rRNA methyltransferase SpoU [Meiothermus ruber DSM 1279]
gi|290470432|gb|ADD27851.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
Length = 266
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
+K RK RE+ G ++EG R + AL A L++ + + + L + H
Sbjct: 17 LKERKNRERTGTFLIEGAREIERALAAGLEVIEAYCGEPLSPEEARAVAHLSRALGLEVH 76
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+ ++ S P G++ + +P +A+ P+S L +V + PGN+G++LR
Sbjct: 77 ELSEAALKKISSREHPAGVLAVARMPRPSLAAFQPSSNALLLVSVGLEKPGNLGALLRSA 136
Query: 118 AAVGARQVVCSRGCVDIYDNKVIR 141
A GA V+ + G VD+Y +VIR
Sbjct: 137 DAAGADAVLVA-GGVDLYSPQVIR 159
>gi|253998852|ref|YP_003050915.1| tRNA/rRNA methyltransferase SpoU [Methylovorus glucosetrophus
SIP3-4]
gi|253985531|gb|ACT50388.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus glucosetrophus
SIP3-4]
Length = 260
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD-------ILKELPLPEDVPQH 57
+S ++R + G +L+G +L D + + + ++ +++EL D+P
Sbjct: 22 ESSRERRRLGQTLLDGPHLLRDYMAVFGTPRQLIIAEGQSTNEVNGLIQELA---DIPTL 78
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V S + TP GI+ + + P P+ P +L ++ ++I+DPGN+GS+LR
Sbjct: 79 MVTTLMFAELSPVTTPTGILALVDTPQLPL----PETLEFVLMLEDIQDPGNLGSMLRSA 134
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AA G + V S GC + + K +R
Sbjct: 135 AAAGVQAVYLSEGCAEAWSPKALRGG 160
>gi|357974852|ref|ZP_09138823.1| tRNA/rRNA methyltransferase [Sphingomonas sp. KC8]
Length = 268
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ ++ R ++G + EG RIL +A +A + +FF+ L +
Sbjct: 19 LREKRHRREEGMFLAEGLRILTEAREAGRIPRYIFFAADSAGHRLVQDLIHAVESTGGEA 78
Query: 64 IQLWSDLV-------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
I+ D++ P +IG+++ A + +ID + + IV ++RDPGN+G+ILR
Sbjct: 79 IETGRDILHKLSGKDNPQTVIGVYDEFATGLDAIDRNTASIWIVAQSMRDPGNLGTILRT 138
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA ++ CVD + + +RA+
Sbjct: 139 GDAVGAGGLILIDDCVDPFSVEAVRAS 165
>gi|372489305|ref|YP_005028870.1| rRNA methylase [Dechlorosoma suillum PS]
gi|359355858|gb|AEV27029.1| rRNA methylase [Dechlorosoma suillum PS]
Length = 258
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 8/144 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW-----DILKELPLPEDVPQHRV 59
+S ++R K G+ +L+G +L + K++ +F S+ +I L + Q +
Sbjct: 20 QSGRERRKTGFSVLDGMHLLTAYEERFQKVRELFVSEAARDKPEIAAYLAASAGIKQTVL 79
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ + + TP GI+G+ P + + P + ++ D ++DPGN+GSILR AA
Sbjct: 80 SERLFEDLGLVDTPTGIVGLINTP---VPAAGPDAQGDAVLLDGVQDPGNLGSILRSAAA 136
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G RQV+ S C + K +RA
Sbjct: 137 AGFRQVLLSADCAQAWAPKTLRAG 160
>gi|395778904|ref|ZP_10459415.1| hypothetical protein MCU_01116 [Bartonella elizabethae Re6043vi]
gi|423714752|ref|ZP_17688976.1| hypothetical protein MEE_00177 [Bartonella elizabethae F9251]
gi|395417079|gb|EJF83431.1| hypothetical protein MCU_01116 [Bartonella elizabethae Re6043vi]
gi|395430971|gb|EJF96999.1| hypothetical protein MEE_00177 [Bartonella elizabethae F9251]
Length = 282
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
+ +K R ++G M EG +++IDAL ++ + FS+ +I E V
Sbjct: 26 LSQKKNRNREGLFMAEGLKLVIDALNLGWTIQTLIFSKSEIGNATIENTAARAVANGGFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K Q + +T P +IGIF P+ I + + I D +RDPGN+G+I+R
Sbjct: 86 IKASQKVMESLTRRDNPQTVIGIFRQKWQPLEMIKGQAKDVYIALDRVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 146 ADAVGAKGVLLIGETTDPFSPEAVRAT 172
>gi|262394780|ref|YP_003286634.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
gi|451970216|ref|ZP_21923443.1| RNA methyltransferase TrmH family [Vibrio alginolyticus E0666]
gi|262338374|gb|ACY52169.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
gi|451933730|gb|EMD81397.1| RNA methyltransferase TrmH family [Vibrio alginolyticus E0666]
Length = 244
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ ++LK+K VF ++ + + +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELASSSLKVKHVFATEAFLEQNASALSGFDCIEASLDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P+ + P + L I D + DPGN+G+I+RV G +
Sbjct: 73 LTKASTLVSNNAAIAVVEIPSVKV----PQAKGLMIALDGVSDPGNLGTIIRVADWYGIK 128
Query: 124 QVVCSRGCVDIYDNKVIRA 142
++ S C D Y+ K I A
Sbjct: 129 HIIASTDCADPYNPKTISA 147
>gi|395764879|ref|ZP_10445499.1| hypothetical protein MCO_00375 [Bartonella sp. DB5-6]
gi|395413696|gb|EJF80158.1| hypothetical protein MCO_00375 [Bartonella sp. DB5-6]
Length = 284
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
+ +K R ++G M EG +++IDAL ++ + FS+ I E V
Sbjct: 26 LNQKKNRNREGLFMAEGLKLVIDALNLGWTIQTLIFSKSKIENTAIENTAARTVANGGFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K Q + +T P +IGIF+ P+ I + + D +RDPGN+G+I+R
Sbjct: 86 IKASQKVMESITRRDNPQTVIGIFKQQWQPLEMIKEQVGNVYVALDRVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 146 ADAVGAKGVILIGETTDPFSPETVRAT 172
>gi|395782174|ref|ZP_10462578.1| hypothetical protein MCY_00975 [Bartonella rattimassiliensis 15908]
gi|395419113|gb|EJF85414.1| hypothetical protein MCY_00975 [Bartonella rattimassiliensis 15908]
Length = 282
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
+ +K R K+G M EG +++IDAL ++ + FS+ I E V
Sbjct: 26 LSQKKNRNKEGLFMAEGLKLVIDALNLGWTIQTLIFSKSKIGNAAIENTAARAVANGAFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K Q + +T P +IGIF+ P I + I D +RDPGN+G+I+R
Sbjct: 86 IKASQKVMESLTRRDNPQTVIGIFKQKWQPFEIITEQVKDVYIALDRVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 146 ADAVGAKGVILIGETTDPFSPETVRAT 172
>gi|331083397|ref|ZP_08332509.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
gi|330404090|gb|EGG83638.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
Length = 269
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 13/151 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--------WDILKE--LPLPED 53
+K K R ++ +EG ++ + K+ +L+ V+ SQ IL+E + + E
Sbjct: 17 LKKAKVRREEQVFAVEGIKMFSEVPKS--RLQKVYLSQSFAEKEECGRILQEKGISIEET 74
Query: 54 VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGS 112
VD K + SD VTP G++ + ++ ++ I PL ++ ++++DPGN+G+
Sbjct: 75 AYVEIVDDKIFKNLSDTVTPQGVLCLVKMENFTLSEILSGEENPLLMILEDLQDPGNLGT 134
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
ILR G V+ SR VD+++ KVIR+
Sbjct: 135 ILRTGEGAGVTGVIMSRTSVDVFNPKVIRST 165
>gi|254229032|ref|ZP_04922453.1| rRNA methylases [Vibrio sp. Ex25]
gi|151938500|gb|EDN57337.1| rRNA methylases [Vibrio sp. Ex25]
Length = 268
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ ++LK+K VF ++ + + +
Sbjct: 37 LGQKKQRKAHGLFLVQGEKNVLELASSSLKVKHVFATEAFLEQNASALSGFDCIEASLDD 96
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P+ + P + L I D + DPGN+G+I+RV G +
Sbjct: 97 LTKASTLVSNNAAIAVVEIPSVKV----PQAKGLMIALDGVSDPGNLGTIIRVADWYGIK 152
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++ S C D Y+ K I A
Sbjct: 153 HIIASTDCADPYNPKTISAT 172
>gi|331701543|ref|YP_004398502.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL
B-30929]
gi|329128886|gb|AEB73439.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL
B-30929]
Length = 256
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
M+S+K R K G ++EG I+ +A++ +K + L +LP+ +D + +
Sbjct: 20 MQSKKGRVKSGEYVIEGWHIVDEAIRHRQTIKQLMVVDESYLGDLPVDDDTEIFLITPEI 79
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S TP G+ + + D ++ DNI+DPGN+G+++R A G
Sbjct: 80 AKHISSTETPQGVFAVLNTEDYHEQIPDDLKGAW-LLLDNIQDPGNIGTMVRTADAAGLN 138
Query: 124 QVVCSRGCVDIYDNKVIRA 142
+V +G D+Y+ KV+R+
Sbjct: 139 GIVFGKGSADLYNPKVVRS 157
>gi|336317736|ref|ZP_08572587.1| rRNA methylase [Rheinheimera sp. A13L]
gi|335878083|gb|EGM76031.1| rRNA methylase [Rheinheimera sp. A13L]
Length = 249
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 21/150 (14%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDY 61
++ +K R+ + +EG++ +++ L ++ K++ VF ++ + + L D+ Q ++
Sbjct: 13 LQQKKYRKAEQLFFVEGEKSVLELLHSSWKVRAVFGTEHFLQQHHGLCTKADLVQQCTEH 72
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASID-PASLPLN-------IVCDNIRDPGNMGSI 113
+ +Q +G F +A + PA+LP +V D I DPGN+G+I
Sbjct: 73 ELVQ-----------VGTFSSNNAALAVAEIPATLPFKEQQGDWVLVLDQINDPGNLGTI 121
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+R+ G RQ++CS VD+Y+ KVI AA
Sbjct: 122 IRIADWYGIRQLLCSPDTVDLYNPKVIAAA 151
>gi|253681735|ref|ZP_04862532.1| rRNA methylase [Clostridium botulinum D str. 1873]
gi|253561447|gb|EES90899.1| rRNA methylase [Clostridium botulinum D str. 1873]
Length = 260
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----------WDILKELP--- 49
+ +K R ++G ++EG R + +ALK+ ++ V S+ +D+++E
Sbjct: 18 LSKKKYRTQEGKFLVEGFRFVQEALKSTFEVPYVLISENSNEKCESFNIYDLIQENTKVY 77
Query: 50 -LPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPG 108
+ +D+ + D N P GI+ + I ++ D I+DPG
Sbjct: 78 LVRDDILKELCDTNN---------PQGILAVVNNKVMEIED----QKGFYVLVDRIQDPG 124
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
NMG+I+R A GA V+ ++G VD+Y++K +R+
Sbjct: 125 NMGTIIRSANASGALGVITTKGTVDVYNDKTLRST 159
>gi|300767192|ref|ZP_07077104.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|380032397|ref|YP_004889388.1| SpoU family rRNA methyltransferase [Lactobacillus plantarum WCFS1]
gi|448821078|ref|YP_007414240.1| rRNA methylase, SpoU family [Lactobacillus plantarum ZJ316]
gi|300495011|gb|EFK30167.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|342241640|emb|CCC78874.1| rRNA methylase, SpoU family [Lactobacillus plantarum WCFS1]
gi|448274575|gb|AGE39094.1| rRNA methylase, SpoU family [Lactobacillus plantarum ZJ316]
Length = 255
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K R+++G +L+G ++ +A+KA++ ++ + + + E L + +
Sbjct: 18 LQTKKGRKQQGQYLLDGWHLVNEAVKAHVAIQTLLITAKQLATEPDLTHFPAVIEISDEV 77
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN---IVCDNIRDPGNMGSILRVCAAV 120
+ S VTP G+ + LPA A D + L L ++ DN++DPGN+G+++R A
Sbjct: 78 AKHISATVTPQGVFALATLPA---AIEDLSQLDLTRPWLLLDNVQDPGNIGTMVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G V G VDI+ KV RA
Sbjct: 135 GFAGVAFGTGTVDIHQPKVERA 156
>gi|254556469|ref|YP_003062886.1| rRNA methylase [Lactobacillus plantarum JDM1]
gi|308180411|ref|YP_003924539.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
gi|418275072|ref|ZP_12890484.1| rRNA methylase, SpoU family [Lactobacillus plantarum subsp.
plantarum NC8]
gi|254045396|gb|ACT62189.1| rRNA methylase [Lactobacillus plantarum JDM1]
gi|308045902|gb|ADN98445.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
gi|376009543|gb|EHS82871.1| rRNA methylase, SpoU family [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 257
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K R+++G +L+G ++ +A+KA++ ++ + + + E L + +
Sbjct: 20 LQTKKGRKQQGQYLLDGWHLVNEAVKAHVAIQTLLITAKQLATEPDLTHFPAVIEISDEV 79
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN---IVCDNIRDPGNMGSILRVCAAV 120
+ S VTP G+ + LPA A D + L L ++ DN++DPGN+G+++R A
Sbjct: 80 AKHISATVTPQGVFALATLPA---AIEDLSQLDLTRPWLLLDNVQDPGNIGTMVRTADAA 136
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G V G VDI+ KV RA
Sbjct: 137 GFAGVAFGTGTVDIHQPKVERA 158
>gi|166030706|ref|ZP_02233535.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
27755]
gi|166029498|gb|EDR48255.1| RNA methyltransferase, TrmH family, group 3 [Dorea formicigenerans
ATCC 27755]
Length = 264
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 13/144 (9%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDV-------PQHRVDYK 62
R+++G ++EG R+ + K +L V+ S+ +E E V P+ D+
Sbjct: 23 RDEEGVFLVEGIRMFREVPKD--RLVEVYASEEFWNRERKAVEQVLAGTKVQPEILADFV 80
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASI---DPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ SD TP GI+ + + I I LPL +V D I+DPGN+G+I+R
Sbjct: 81 -FEYVSDTKTPQGILCLVRQKQYSITEIVKEKGGELPLLLVLDQIQDPGNLGTIVRTAEG 139
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G +V S+ CVD+Y+ KV+R+
Sbjct: 140 AGVTGIVMSQDCVDMYNPKVVRST 163
>gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
Nor1]
gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
Nor1]
Length = 270
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 25/155 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----------WDILKE----- 47
+K +K R++ ++EG R++ +A + + M F+++ +IL
Sbjct: 19 LKQKKYRDEYNLFVVEGIRLVEEAAGSTWRPAMCFYTEKAAAAPRVQATLEILAAKGCRI 78
Query: 48 LPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDP 107
P+ ++V Y I +D P GI+ + E + + + L +V DN++DP
Sbjct: 79 FPVADNV------YAKI---TDTEQPQGILCVMEKKRYTFDDLQSSDRELIVVLDNVQDP 129
Query: 108 GNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
GN+G+++R A G V+ ++GC D++ K +RA
Sbjct: 130 GNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRA 164
>gi|309792162|ref|ZP_07686634.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG-6]
gi|308225703|gb|EFO79459.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
Length = 284
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 17/145 (11%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN---- 63
++R ++ ++EG R++ AL +L +V ++ D L+ P + +H +
Sbjct: 46 RERRREQRFVIEGVRLVAHALAVGAELCVVLYNP-DSLRATPAGSALLEHLLTRPGCFAA 104
Query: 64 ----IQLWSDLVTPPGIIGIFELPAHPIASIDPASLP-LNIVCDNIRDPGNMGSILRVCA 118
I +D TP G++ P + A P L ++ D I+DPGN+G++LR
Sbjct: 105 NEVAISAATDTRTPQGVVAAMAWP-------NLAPQPGLGLILDAIQDPGNLGTLLRSAE 157
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G VVC+ GC D + KV+RAA
Sbjct: 158 AAGVGWVVCAPGCADPFAPKVVRAA 182
>gi|320157988|ref|YP_004190366.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O]
gi|319933300|gb|ADV88163.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O]
Length = 244
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD--- 60
+ +KQR+ G +++G++ +++ + LK+K VF + E + QH V+
Sbjct: 13 LGQKKQRKALGLFLVQGEKNVLELANSTLKVKQVFAT----------AEFLQQHAVELAG 62
Query: 61 YKNIQL-------WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
Y+ I+ S LV+ I + E+PA P + L I D + DPGN+G+I
Sbjct: 63 YECIEASLDDLTKASTLVSNNAAIAVVEIPAIET----PKAQGLMIALDGVSDPGNLGTI 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+RV G + +V S C D Y+ K I A
Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISA 147
>gi|398349924|ref|YP_006395388.1| tRNA/rRNA methyltransferase YsgA [Sinorhizobium fredii USDA 257]
gi|390125250|gb|AFL48631.1| putative tRNA/rRNA methyltransferase YsgA [Sinorhizobium fredii
USDA 257]
Length = 285
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ +K R++ M EG +++IDAL K+K + +++ K P E V
Sbjct: 33 LAQKKHRDETRSFMAEGLKLVIDALDLGWKIKTLVYAKG--AKGKPQVEQVAAKTVAKGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V+ K I + P ++GIFE P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVNEKVISTITRRDNPQMVVGIFEQRYQPLKDIRPGEDQTYVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A GA ++ D + + +RA
Sbjct: 151 RTADAAGASGIILIGETTDPFSLETVRAT 179
>gi|395788142|ref|ZP_10467718.1| hypothetical protein ME7_01053 [Bartonella birtlesii LL-WM9]
gi|395409924|gb|EJF76509.1| hypothetical protein ME7_01053 [Bartonella birtlesii LL-WM9]
Length = 282
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV---- 59
+ +K R ++G M EG +++I+AL ++ + FS+ I E+ + V
Sbjct: 26 LSQKKNRNREGLFMAEGLKLVINALNLGWTIQTLIFSKSKIGN--TAIENTAAYTVANGG 83
Query: 60 -----DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
K ++ + P +IGIF+ HP+ I + + D +RDPGN+G+I+
Sbjct: 84 FVIKASQKVMESLTRRDNPQTVIGIFKQQWHPLEMIKEQVKDVYVALDRVRDPGNLGTII 143
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA+ V+ D + + +RA
Sbjct: 144 RTADAVGAKGVILIGETTDPFSPETVRAT 172
>gi|346308702|ref|ZP_08850812.1| RNA methyltransferase, TrmH family, group 3 [Dorea formicigenerans
4_6_53AFAA]
gi|345902359|gb|EGX72140.1| RNA methyltransferase, TrmH family, group 3 [Dorea formicigenerans
4_6_53AFAA]
Length = 264
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 13/144 (9%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDV-------PQHRVDYK 62
R+++G ++EG R+ + K +L V+ S+ +E E V P+ D+
Sbjct: 23 RDEEGVFLVEGIRMFREVPKD--RLVEVYASEEFWNRERKAVEQVLAGTKVQPEILADFV 80
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASI---DPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ SD TP GI+ + + I I LPL +V D I+DPGN+G+I+R
Sbjct: 81 -FEYVSDTKTPQGILCLVRQKQYSITEIVKEKGGELPLLLVLDQIQDPGNLGTIVRTAEG 139
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G +V S+ CVD+Y+ KV+R+
Sbjct: 140 AGVTGIVMSQDCVDMYNPKVVRST 163
>gi|410456538|ref|ZP_11310398.1| 23S rRNA methyltransferase [Bacillus bataviensis LMG 21833]
gi|409927922|gb|EKN65047.1| 23S rRNA methyltransferase [Bacillus bataviensis LMG 21833]
Length = 249
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 19/145 (13%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHR 58
++K+R+K G ++EG ++ +ALK ++ V S+ WD P P
Sbjct: 20 TKKERDKSGTFLIEGFHLVEEALKQGEQILEVIVSEKVDLPPRWD-------PAGTPVTL 72
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V + S+ P GI + + ++ + A L I D ++DPGN G+++R
Sbjct: 73 VTEEISNSLSETEAPQGI---YAVCRQTVSEVGEAKTFLFI--DAVQDPGNFGTMIRTAD 127
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G VV RG VDI+++KV+R+A
Sbjct: 128 AAGIDAVVVGRGSVDIFNSKVLRSA 152
>gi|395493030|ref|ZP_10424609.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas sp. PAMC 26617]
Length = 267
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP--LPEDVPQHRVDY 61
++ ++ R ++G + EG RIL +A +A +FF++ L L E V
Sbjct: 19 LREKRHRREEGLFLAEGLRILTEAREAGRIPHYLFFARDSAAHPLVQVLVEAV--EAAGG 76
Query: 62 KNIQLWSDLVT-------PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ I+ D+++ P ++G+F + ++D ++ P+ +V + +RDPGN+G+IL
Sbjct: 77 EAIETVPDILSKLSGKDNPQAVVGVFAEFTRTLDALDRSTSPIWLVAERLRDPGNLGTIL 136
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA ++ CVD + + +RA+
Sbjct: 137 RTGDAVGAGGLILIGECVDPFSVEAVRAS 165
>gi|411116975|ref|ZP_11389462.1| rRNA methylase [Oscillatoriales cyanobacterium JSC-12]
gi|410713078|gb|EKQ70579.1| rRNA methylase [Oscillatoriales cyanobacterium JSC-12]
Length = 259
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMV---------FFSQWDILKELPLPEDVPQHR 58
K+R ++G +LEG +L A AN + +V + W K+ ++
Sbjct: 20 KERREQGVFLLEGTHLLEAACLANRTIALVCCTPDWQAKYPELWQHAKQRATRTEI---- 75
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V + ++ + V P G+I E P+ P+ P L +V + I+DPGN+G+++R A
Sbjct: 76 VSPEVLKAIATTVEPDGVIATVERPSIPV----PTFTTLGLVLETIQDPGNLGTMIRTVA 131
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAAA 144
A GA ++ S VD+ KV+RA+A
Sbjct: 132 AAGAEGLLLSADSVDLDHPKVLRASA 157
>gi|295696878|ref|YP_003590116.1| tRNA/rRNA methyltransferase SpoU [Kyrpidia tusciae DSM 2912]
gi|295412480|gb|ADG06972.1| tRNA/rRNA methyltransferase (SpoU) [Kyrpidia tusciae DSM 2912]
Length = 271
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 16 LMLEGKRILIDALKANLKLKMVFFSQWDILKEL-PLPEDV-----PQHRVDYKNIQLWSD 69
+ EG ++ +AL + L +++V F D E+ L E+ P VD + ++ +
Sbjct: 32 FLAEGPHLVGEALHSGLGIEVVLFDPRDQTPEVASLVEEARGKGCPVQPVDRRVLERVCE 91
Query: 70 LVTPPGIIGIFELPAHPIASID---PASLP-LNIVCDNIRDPGNMGSILRVCAAVGARQV 125
++TP GI + +P P+ P P L + D I+DPGN+G++LRV AVG V
Sbjct: 92 VITPQGIAAVVRIPERPMPGFAVEAPEEDPVLMVALDGIQDPGNVGAVLRVARAVGVTGV 151
Query: 126 VCSRGCVDIYDNKVIRAA 143
+C D + K +R++
Sbjct: 152 LCGEDTADPFSPKAVRSS 169
>gi|378824621|ref|YP_005187353.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB 23S rRNA Gm2251
2'-O-methyltransferase [Sinorhizobium fredii HH103]
gi|365177673|emb|CCE94528.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB 23S rRNA Gm2251
2'-O-methyltransferase [Sinorhizobium fredii HH103]
Length = 285
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ +K R++ M EG +++IDAL K+K + +++ K P E V
Sbjct: 33 LAQKKHRDETRSFMAEGLKLVIDALDLGWKIKTLVYAK--AAKGKPQVEQVAARAVAKGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIFE P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVISTITRRDNPQMVVGIFEQRYQPLKDIRPQEGETYVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ D + + +RA
Sbjct: 151 RTADAAGASGVILIGETTDPFSLETVRA 178
>gi|406027103|ref|YP_006725935.1| 23S rRNA methyltransferase, TrmH family [Lactobacillus buchneri
CD034]
gi|405125592|gb|AFS00353.1| 23S rRNA methyltransferase, TrmH family [Lactobacillus buchneri
CD034]
Length = 262
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
M+S+K R K G ++EG I+ +A++ +K + L +LP+ +D + +
Sbjct: 26 MQSKKGRVKSGEYVIEGWHIVDEAIRHRQTIKQLMVVDESYLGDLPVDDDTEIFLITPEI 85
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S TP G+ + + D ++ DNI+DPGN+G+++R A G
Sbjct: 86 AKHISSTETPQGVFAVLNTEDYHEQIPDDLKGAW-LLLDNIQDPGNIGTMVRTADAAGLN 144
Query: 124 QVVCSRGCVDIYDNKVIRA 142
+V +G D+Y+ KV+R+
Sbjct: 145 GIVFGKGSADLYNPKVVRS 163
>gi|383111270|ref|ZP_09932083.1| hypothetical protein BSGG_4539 [Bacteroides sp. D2]
gi|313697004|gb|EFS33839.1| hypothetical protein BSGG_4539 [Bacteroides sp. D2]
Length = 254
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+++G + EG +++ D L + S W L+E P + V ++
Sbjct: 15 LELKKIRKEEGVFLAEGPKLVGDLLGHFPCRFLAATSSW--LQEHPDIDASELVEVSQED 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASL--PLNIVCDNIRDPGNMGSILRVCAAVG 121
+ S L TP ++ IFE P++ +++P + L + D+++DPGN+G+I+R+ G
Sbjct: 73 LSRASLLKTPQQVLAIFEQPSY---TVNPEVVHQSLCLALDDVQDPGNLGTIIRLADWFG 129
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++CS+ VD+Y+ K I+A
Sbjct: 130 IEHIICSQNTVDVYNPKTIQAT 151
>gi|354584792|ref|ZP_09003684.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus lactis 154]
gi|353191343|gb|EHB56850.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus lactis 154]
Length = 269
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-QWDILKELPLPEDVPQH----R 58
++ +K R+K+ ++EG ++ +AL + ++ V F + I +EL D Q
Sbjct: 17 LQEKKHRDKQNKYVVEGIHLVQEALSSGADVECVAFDIERGIPRELTGIPDTEQGVEWIG 76
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V + I SD +P + + A + L +V D ++DPGN+G+I+R
Sbjct: 77 VSHAVIAKVSDTPSPQPVFAVVRKEAGQWQDLIMREGGLVMVLDGLQDPGNVGTIIRTAD 136
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA VV RGC D+Y+ K +R+
Sbjct: 137 AVGAGGVVLGRGCADVYNPKTLRST 161
>gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase SpoU [Granulicella tundricola MP5ACTX9]
gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Granulicella tundricola
MP5ACTX9]
Length = 263
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP--LPEDVPQHRVDYKNIQ 65
+ R G + +EG+ ++ +ALK+ LK VF S+ ELP +P V V
Sbjct: 26 QARLSSGLIAVEGEHMVEEALKSGQALKTVFLSER---MELPAYVPASVEVVSVASDVFA 82
Query: 66 LWSDLVTPPGIIGIFELPAHPIAS-IDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
++ TP GI + PAH + ++ L ++ ++DPGN+G+++R A GA
Sbjct: 83 SIAETRTPQGIAALLVPPAHSVEKMLEGPGEALILIAVGLQDPGNLGTLIRSAEAFGATG 142
Query: 125 VVCSRGCVDIYDNKVIRAAA 144
V+ + G V ++ K +RA+A
Sbjct: 143 VLTTPGTVSPWNQKAMRASA 162
>gi|94495543|ref|ZP_01302123.1| rRNA methylase [Sphingomonas sp. SKA58]
gi|94424931|gb|EAT09952.1| rRNA methylase [Sphingomonas sp. SKA58]
Length = 266
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 21/153 (13%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+ +G + EG RIL +A + + +M+F + L L +D+ D
Sbjct: 19 LREKKYRKAEGLFLAEGLRILTEAREEGVLPEMLFHAGTAHPLGLELIDDIEAAGGDV-- 76
Query: 64 IQLWSDLVTPPGI-------------IGIFELPAHPIASIDPASLPLNIVCDNIRDPGNM 110
+VT P I +G++ P+A++D +S + IV ++RDPGN+
Sbjct: 77 ------IVTTPDILSKISGKDNAQALVGVYRDRLTPLAALDRSSADIWIVAQSLRDPGNL 130
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+ILR AVGA ++ CVD + + +RA+
Sbjct: 131 GTILRTGDAVGAGGLILIDDCVDPFSVESVRAS 163
>gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase SpoU [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 274
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------- 57
K +K R G +LEG L+ + LK + S+ LK L + + V +H
Sbjct: 26 KGQKSRMASGQALLEGIH-LVQTWVGDPALKTLLTSEVG-LKNLEISQAVYEHLEICPST 83
Query: 58 RVDYKNIQLW---SDLVTPPGIIGIFELPAHPIASIDP-ASLPLNIV-CDNIRDPGNMGS 112
+V + LW SDLV+ P I G+ +LP + + A+L ++V ++D GN+GS
Sbjct: 84 KVFQLDGALWDLLSDLVSAPHIAGLLDLPKSTLTTPQSIATLDGDVVILARVQDAGNVGS 143
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
ILR AA G Q + GC ++ KV+RA
Sbjct: 144 ILRTAAAAGFTQAIALTGCAHLWSTKVLRAG 174
>gi|404379287|ref|ZP_10984352.1| hypothetical protein HMPREF9021_01720 [Simonsiella muelleri ATCC
29453]
gi|404294706|gb|EFG30433.2| hypothetical protein HMPREF9021_01720 [Simonsiella muelleri ATCC
29453]
Length = 266
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 23/152 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE------DVPQH 57
+++ K R + +LEG +L L A+ K VF Q L PE +P+H
Sbjct: 21 LQNAKSRREHRATVLEGVHLLDAYLDASHLPKRVFVPQ----NRLANPEIQRIINRLPEH 76
Query: 58 R---VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN---IVCDNIRDPGNMG 111
V++ + S L I+ ELP SLP++ +V +NI++ GN+G
Sbjct: 77 LITLVEHGKLNKISQLTEAEDIMTWVELPI-------SGSLPISDDCVVLENIQNSGNIG 129
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+ILR AA G Q+V S+GC D++ KV+RAA
Sbjct: 130 TILRSAAAAGVAQIVLSKGCADVWSPKVLRAA 161
>gi|255036484|ref|YP_003087105.1| tRNA/rRNA methyltransferase SpoU [Dyadobacter fermentans DSM 18053]
gi|254949240|gb|ACT93940.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
18053]
Length = 253
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVF----FSQWDILKELPLPEDVPQHRV 59
+K +K R+ G M+EG + +++ L ++ +++ V F Q + +V V
Sbjct: 13 LKIKKYRQLHGAFMVEGAKSVLELLDSDFEIEFVLVTPEFQQK--YSSILTRHNVSVETV 70
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ ++ T + + + + A + PA+ ++ D++RDPGN+G+I+R+
Sbjct: 71 TAQELEGLGSFQTNDSSLAVAKTKEN--AFLSPAAKEYILMLDDVRDPGNLGTIIRIADW 128
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G ++VCSR DIY+ KVI AA
Sbjct: 129 YGITKIVCSRDTTDIYNPKVIAAA 152
>gi|15964143|ref|NP_384496.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
gi|334314793|ref|YP_004547412.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium meliloti AK83]
gi|384528130|ref|YP_005712218.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium meliloti BL225C]
gi|384534487|ref|YP_005718572.1| probabable RNA methyltransferase, TrmH family [Sinorhizobium
meliloti SM11]
gi|407719232|ref|YP_006838894.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti Rm41]
gi|418400285|ref|ZP_12973827.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti CCNWSX0020]
gi|433612176|ref|YP_007188974.1| rRNA methylase [Sinorhizobium meliloti GR4]
gi|15073319|emb|CAC41827.1| Probable RNA methyltransferase, TrmH family [Sinorhizobium meliloti
1021]
gi|333810306|gb|AEG02975.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
gi|334093787|gb|AEG51798.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
gi|336031379|gb|AEH77311.1| probabable RNA methyltransferase, TrmH family [Sinorhizobium
meliloti SM11]
gi|359505754|gb|EHK78274.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti CCNWSX0020]
gi|407317464|emb|CCM66068.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti Rm41]
gi|429550366|gb|AGA05375.1| rRNA methylase [Sinorhizobium meliloti GR4]
Length = 288
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ +K R++ M EG +++IDAL K+K + +++ K P E V
Sbjct: 35 LTQKKHRDETRSFMAEGLKLVIDALDLGWKIKTLVYAKA--AKGKPQVEQVAAKTVARGG 92
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V+ K I + P ++GIFE P+ I P + D +RDPGN+G+I+
Sbjct: 93 LVLEVNEKVISTITRRDNPQMVVGIFEQRYSPLRDIHPQEGETYVALDRVRDPGNLGTII 152
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA ++ D + + +RA
Sbjct: 153 RTADAAGASGIILVGETTDPFSLETVRA 180
>gi|395855433|ref|XP_003800167.1| PREDICTED: RNA methyltransferase-like protein 1 [Otolemur
garnettii]
Length = 222
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 39/50 (78%)
Query: 94 SLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
SLP+ ++CDN+RDPGN+G+ILR A G +V+ ++GCVD ++ KV+RA
Sbjct: 11 SLPILLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 60
>gi|357039267|ref|ZP_09101061.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum gibsoniae DSM
7213]
gi|355358166|gb|EHG05934.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum gibsoniae DSM
7213]
Length = 267
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-------QWDILKELPLPEDVPQ 56
+ RK RE++G ++EG R L +A++ + L+++ S + L +L VP
Sbjct: 16 LAHRKFREQEGKFIIEGVRFLEEAVQVDWPLELILHSGSAAQQPRAGHLLDLLAQRGVPM 75
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPA-----SLPLNIVCDNIRDPGNMG 111
V+ +D +P G++ + +P +DP L ++ D IRDPGN+G
Sbjct: 76 LAVEDALFHELADTESPQGVMAVARVPVG--MDMDPQVWTDRGWDLLLLVDGIRDPGNLG 133
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+I+R A GA V+ G VD Y+ K +R+
Sbjct: 134 TIIRSADAAGAGGVLVMHGSVDPYNAKTLRS 164
>gi|168188126|ref|ZP_02622761.1| rRNA methylase [Clostridium botulinum C str. Eklund]
gi|169294044|gb|EDS76177.1| rRNA methylase [Clostridium botulinum C str. Eklund]
Length = 261
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 14/148 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--------WDILKELPLPEDVP 55
++ +K R ++ ++EG R + +ALK+ K+ V + ++I + E+
Sbjct: 18 LRKKKYRVQEEKFLVEGFRFVEEALKSTFKISHVLVGESAKEKCNSFNIFN--IVSENTK 75
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V + ++ + P GII I + + I +I+ S ++ D ++DPGNMG+I+R
Sbjct: 76 ISLVKDEILKELCETNNPQGIIAIVD---NKIINIEDKS-GFYVLADKVQDPGNMGTIIR 131
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ ++G VDIY++K +R+
Sbjct: 132 SANASGALGVIVTKGTVDIYNDKTLRST 159
>gi|225572770|ref|ZP_03781525.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
10507]
gi|225039827|gb|EEG50073.1| RNA methyltransferase, TrmH family, group 3 [Blautia
hydrogenotrophica DSM 10507]
Length = 260
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMV---FFSQWDILKEL-PLPEDVPQHRVDYKN 63
K R +G + EG ++ +A + ++ + + + +I K L LP ++ R+ ++
Sbjct: 21 KARRDRGLFVAEGLKMFQEAPDSWIEKVYIADRLYEEQEIQKRLGSLPVEIVDDRI-FRQ 79
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
I SD TP GI+ + P + + I PL +V ++++DPGN+G+I+R GA
Sbjct: 80 I---SDTKTPQGILCLLRCPHYRLEKILEKENPLLMVLEDLQDPGNVGTIIRTAEGAGAD 136
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++ S+ VDI++ KVIR+
Sbjct: 137 GILLSKNTVDIFNPKVIRST 156
>gi|386715026|ref|YP_006181349.1| RNA methyltransferase [Halobacillus halophilus DSM 2266]
gi|384074582|emb|CCG46075.1| RNA methyltransferase [Halobacillus halophilus DSM 2266]
Length = 244
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ RK R ++ ++EG ++ +A+K++ + S+ +PE V +
Sbjct: 16 LHKRKYRNREQRFLIEGYHLVEEAMKSDWPVIEFIISE---DASFSVPEQTKCTTVSRQV 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S+ TP GI + L + PA PL ++ D ++DPGN+G+++R A G
Sbjct: 73 FSAISETETPQGIAAVVGLKEWEYS---PA--PLTLLVDAVQDPGNLGTLIRTADAAGFD 127
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V G VD Y++KVIRA
Sbjct: 128 HIVLGTGTVDPYNDKVIRAT 147
>gi|403070314|ref|ZP_10911646.1| rRNA methylase [Oceanobacillus sp. Ndiop]
Length = 245
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 13/143 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD--Y 61
+ RK+R G ++EG +L +A K++ + + +Q DI LP+ +RV+
Sbjct: 16 LHKRKERTNSGTFIVEGFHLLEEASKSDWTI-VEIIAQEDI----KLPDWTEAYRVERVS 70
Query: 62 KNIQLW-SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
N+ + S +P G++ I E+ + D ++ D+I+DPGN+G+I+R A
Sbjct: 71 GNVMAYISQTPSPQGVLAIMEIKEPKDRNGDHF-----LIIDSIQDPGNLGTIIRTADAA 125
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++ G VD+Y++KVIR+
Sbjct: 126 GMDGIIIGEGTVDLYNDKVIRST 148
>gi|261252040|ref|ZP_05944614.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417952855|ref|ZP_12595905.1| RNA methyltransferase, TrmH family [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260938913|gb|EEX94901.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342818097|gb|EGU52967.1| RNA methyltransferase, TrmH family [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 244
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ ++LK+K VF + + + +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSSLKVKQVFATAEFLTEHQGELGHFECIEASLDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P+ I P + L I D + DPGN+G+I+RV G +
Sbjct: 73 LTKASTLVSNNAAIAVVEIPSIEI----PKAQGLMIALDGVSDPGNLGTIIRVADWYGIK 128
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V S C D Y+ K I A
Sbjct: 129 HIVASSDCADPYNPKTISAT 148
>gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 258
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 24/151 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ + K R K ++EG ++ +ALKA L L+ + + P + H +
Sbjct: 21 LHTSKGRRKARAFLIEGDHLVQEALKAGLPLQAL----------MATPAYLGDHEELFDQ 70
Query: 64 IQLWSDLVTP------------PGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMG 111
+ L+TP G+ + E P AS+DP+ L ++ D I+DPGN+G
Sbjct: 71 DHCDTYLLTPGLAQYLSQTQQDQGVFAVVESKQKP-ASLDPSWHRL-LLLDAIQDPGNLG 128
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+++R A G V+ +GCVD Y++KV+RA
Sbjct: 129 TMIRTADAAGFDAVILGQGCVDPYNDKVLRA 159
>gi|387812793|ref|YP_005428270.1| rRNA methylase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381337800|emb|CCG93847.1| putative RRNA methylase [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 242
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
+ +K R+ G ++EG+ ++++ KA ++ +Q + P P+H + +
Sbjct: 9 LHQKKYRQSFGQFLVEGEHLVLELEKAAKQVPHWRNAQLYVTSAYEHWPSPWPKHVISDR 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ SD TP GI+ + LP P AS + + ++DPGN+G+ILR A G
Sbjct: 69 QMAQLSDTRTPQGILAVVPLP--PNASEEAVPKEKALYLHEVQDPGNLGTILRTLAWFGG 126
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ + S G VD ++ KV+RA+
Sbjct: 127 FRCLLSPGSVDPFNPKVVRAS 147
>gi|319407885|emb|CBI81537.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
schoenbuchensis R1]
Length = 279
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ---WDILKELPLPEDVPQHRVD 60
+ +K R + G M EG +++IDAL ++ + S+ + + E V +
Sbjct: 26 LNQKKNRNRDGVFMAEGLKLVIDALNLGWAIQTLILSKNKVGNTVIENIAARTVARGGFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K Q + +T P ++GIF+ HPI I + + I D +RDPGN+G+I+R
Sbjct: 86 IKASQKVMESITRRDNPQTVVGIFKQQWHPIEMIKGLTQDVYIALDRVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 146 ADAVGAKGVMLIGETTDPFSPETVRAT 172
>gi|189347569|ref|YP_001944098.1| tRNA/rRNA methyltransferase SpoU [Chlorobium limicola DSM 245]
gi|189341716|gb|ACD91119.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
Length = 263
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRI---LIDALKANLKLKMVFFSQWDILKELPLPEDVPQ-HRV 59
+ +K R+ +G EG R L++AL L + F + + E + +
Sbjct: 18 LHQKKYRDSEGLFFTEGFRTVSELLEALPEPGLLDALLFREGEQAAEGFYGSYSGRVFTL 77
Query: 60 DYKNIQLWSDLVTPPGIIGIFE----LPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
K S TP GI G+F LP P D +SL + D+++DPGN G+ILR
Sbjct: 78 TEKECARLSQTATPSGIFGVFRQQSALPFEP-ERTDGSSLI--VALDDVQDPGNAGTILR 134
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
A GA ++CS G D Y+ K +R++A
Sbjct: 135 TAAWFGADAMICSAGTADRYNAKAVRSSA 163
>gi|313200946|ref|YP_004039604.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. MP688]
gi|312440262|gb|ADQ84368.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. MP688]
Length = 260
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD-------ILKELPLPEDVPQH 57
+S ++R + G +L+G +L D + + + ++ +++EL D+P
Sbjct: 22 ESSRERRRLGQTLLDGPHLLRDYMAVFGTPRQLIIAEGQSTNEVNGLIQELA---DIPTL 78
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V S + TP GI+ + + P P+ P +L ++ ++I+DPGN+GS+LR
Sbjct: 79 MVTTLMFAELSPVTTPTGILALVDTPQLPL----PETLEFVLMLEDIQDPGNLGSMLRSA 134
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AA G + V S GC + + K +R
Sbjct: 135 AAAGVQVVYLSEGCAEAWSPKALRGG 160
>gi|27367704|ref|NP_763231.1| TrmH family RNA methyltransferase [Vibrio vulnificus CMCP6]
gi|27359276|gb|AAO08221.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
Length = 244
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 24/150 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD--- 60
+ +KQR+ G +++G++ +++ + LK+K VF + E + QH V+
Sbjct: 13 LGQKKQRKALGLFLVQGEKNVLELANSTLKVKQVFAT----------AEFLQQHAVELAG 62
Query: 61 YKNIQL-------WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
Y+ I+ S LV+ I + E+PA P + L I D + DPGN+G+I
Sbjct: 63 YECIEASLDDLTKASTLVSNNAAIAVVEIPAIET----PKAQGLMIALDGVSDPGNLGTI 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+RV G + ++ S C D Y+ K I A
Sbjct: 119 IRVADWYGIKHIIASSDCADPYNPKTISAT 148
>gi|313204707|ref|YP_004043364.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes
WB4]
gi|312444023|gb|ADQ80379.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes
WB4]
Length = 250
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R++ G + EG ++++D +A + + W L+E E +D
Sbjct: 13 LSQKKFRDETGLFVAEGTKLVLDLAQAFQCSILAATAAW--LEEYSRLEADEIIEIDENE 70
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLP--LNIVCDNIRDPGNMGSILRVCAAVG 121
+ S+ +P G++ +F P H S D SL L++ D+++DPGN+G+I+R+ G
Sbjct: 71 LSKISNQKSPQGVLAVFAKPNH---SWDKDSLKEKLSLALDDVQDPGNLGTIIRIADWFG 127
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+ CS D Y+ K ++A
Sbjct: 128 ITDIFCSTHSADAYNTKTVQAT 149
>gi|296133375|ref|YP_003640622.1| TrmH family RNA methyltransferase [Thermincola potens JR]
gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
Length = 268
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 1 MVYMKS---RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-----LPE 52
++Y++S +K R+++G ++EG R + +AL++ ++ + + +L++ P +P+
Sbjct: 13 IMYLQSLLQKKYRDREGKFLVEGLRFVQEALQSGADIEELILAAG-VLEKNPSFQSIIPD 71
Query: 53 DVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGS 112
+P + + + +D TP GI + + + P ++ D ++DPGN+G+
Sbjct: 72 KIPITIIADQLFKKITDTETPQGIAALVRKKEFRAEDLFVVANPFLLIIDKVQDPGNLGT 131
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
I+R A G V +G D+Y+ K +RA
Sbjct: 132 IIRTADAAGVTGVALVKGTADLYNPKTLRAT 162
>gi|37675829|ref|NP_936225.1| rRNA methylase [Vibrio vulnificus YJ016]
gi|37200368|dbj|BAC96195.1| rRNA methylase [Vibrio vulnificus YJ016]
Length = 244
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 24/149 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD--- 60
+ +KQR+ G +++G++ +++ + LK+K VF + E + QH V+
Sbjct: 13 LGQKKQRKALGLFLVQGEKNVLELANSTLKVKQVFAT----------AEFLQQHAVELAG 62
Query: 61 YKNIQL-------WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
Y+ I+ S LV+ I + E+PA P + L I D + DPGN+G+I
Sbjct: 63 YECIEASLDDLTKASTLVSNNAAIAVVEIPAIET----PKAQGLMIALDGVSDPGNLGTI 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+RV G + ++ S C D Y+ K I A
Sbjct: 119 IRVADWYGIKHIIASSDCADPYNPKTISA 147
>gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|352684219|ref|YP_004896204.1| RNA methyltransferase [Acidaminococcus intestini RyC-MR95]
gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|350278874|gb|AEQ22064.1| RNA methyltransferase [Acidaminococcus intestini RyC-MR95]
Length = 263
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW--DILKELPLPEDVPQHRVDY 61
++ +K R ++G ++EG R + + ++ + FF+ D KE D+P + V
Sbjct: 19 LQQKKYRLREGLFLVEGVRAVREVRSSSWTVTAYFFTDLPEDFQKEAQ-GSDIPYYEVTG 77
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
++ + P + + L + ++ P L +V D I DPGN+G+++R A+
Sbjct: 78 DIMKKLTATEEPQSLAALVRLKERSLETVHPER-GLILVLDEIHDPGNVGTMIRTARAMN 136
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
A+ V+ G D+Y+ KV+RAA
Sbjct: 137 AQGVILLSGSADLYNPKVVRAA 158
>gi|420241270|ref|ZP_14745418.1| rRNA methylase [Rhizobium sp. CF080]
gi|398072011|gb|EJL63247.1| rRNA methylase [Rhizobium sp. CF080]
Length = 286
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K RE+ G M EG +++IDAL+ ++ + +++ K L E V V +
Sbjct: 33 LTNKKDREESGTFMAEGLKLVIDALELGWTIRTLVYAK--AAKGKTLVEQVAAKTVAHGG 90
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIFE + + P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVLSSVTRRDNPQMVVGIFEQRWKRLDDLRPGRDETLVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A GA V+ C D + + +RA
Sbjct: 151 RTADAAGASGVILVGECTDPFSLETVRAT 179
>gi|293115791|ref|ZP_05793026.2| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
2876]
gi|292808225|gb|EFF67430.1| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
2876]
Length = 246
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
M +K R+++G ++EG R+ ++ K ++ ++ S+ + D V
Sbjct: 1 MNLIKKSGVRKERGLFVIEGIRMFVEIPKD--RIVKIYASESFAYDNKEMLCDYRYEIVA 58
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGSILRVCAA 119
++ SD TP GI+ + ++ + I + +P+ +V +NI+DPGN+G+I+R
Sbjct: 59 DNVFKMMSDTKTPQGILAVVKMLEYDIEDLFKKDKVPMLVVLENIQDPGNLGTIIRTAEG 118
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
GA ++ S VDIY+ K IR+
Sbjct: 119 AGATGIIMSDKTVDIYNPKTIRST 142
>gi|372270320|ref|ZP_09506368.1| rRNA methylase [Marinobacterium stanieri S30]
Length = 242
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE-DVPQHRVDYK 62
++ +K R + G+ ++EG+ ++++ KA + + ++ + ++ E D+ H V+ K
Sbjct: 9 LQQKKFRTETGYCLVEGEHLVLELQKAAEQQSSLATAELYLTEQYAEWETDLEVHPVNSK 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVC--DNIRDPGNMGSILRVCAAV 120
+ S +P GI+ + P+++I P S + I+DPGN+G+ILR A
Sbjct: 69 QMSAISATKSPQGIVAVV-----PMSAIQPKSTQQEVALYFHEIQDPGNLGTILRTLAWF 123
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + + S G VD ++ KVIRA+
Sbjct: 124 GGYRCLLSPGSVDPFNPKVIRAS 146
>gi|189501044|ref|YP_001960514.1| tRNA/rRNA methyltransferase SpoU [Chlorobium phaeobacteroides BS1]
gi|189496485|gb|ACE05033.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
BS1]
Length = 267
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 7 RKQREKKGWLMLEGKRILIDALKA--NLKLKMVFFSQWDILKELPLPEDVPQ--HRVDYK 62
+K R+++G + EG R + + + + + + + L +P + + +D
Sbjct: 23 KKYRDREGLFLAEGLRTVSELMHHIPDAGYLIALLVEKEQLSHIPQSRRYKEKIYLIDSD 82
Query: 63 NIQLWSDLVTPPGIIGIF---ELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ S T GI+GIF + A I+S + + L + D+++DPGN+G+ILR +
Sbjct: 83 EARRLSGTSTAQGIVGIFSQQKRSAGEISSQEQHAGELVLALDDVQDPGNVGTILRTASW 142
Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
G VVC G D Y+ K IRA A
Sbjct: 143 FGVSTVVCGPGTADRYNPKAIRAGA 167
>gi|229495405|ref|ZP_04389140.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
35406]
gi|229317848|gb|EEN83746.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
35406]
Length = 261
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 13/148 (8%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ--HR 58
+V ++ K R +G + EG + LI L A +++ + LPL E + Q H
Sbjct: 17 IVALQQTKVRRAEGLFVAEGPK-LIGELLATFPCRLLVTTA----SFLPLVEGLGQIQHV 71
Query: 59 V---DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V + + S L TP +I + ELP P AS A +++ DN++DPGN+GSILR
Sbjct: 72 VLLPEEYDFSSLSTLRTPRPMIALLELPTPPSASTITAP---SLLLDNVQDPGNVGSILR 128
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G R V + G D + KV++A
Sbjct: 129 TADWFGCRSVFTTEGTADPFSPKVVQAT 156
>gi|373500938|ref|ZP_09591308.1| hypothetical protein HMPREF9140_01426 [Prevotella micans F0438]
gi|371950975|gb|EHO68824.1| hypothetical protein HMPREF9140_01426 [Prevotella micans F0438]
Length = 234
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K RE+ G + EG +I+ + + +L+ + + P++V Q
Sbjct: 13 LATKKGRERSGLFLAEGPKIVDELIAGGFELEFLIDN----------PDEVCQA------ 56
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S L P G+IG+F+ P S P L I D ++DPGN+G+I+R+ G R
Sbjct: 57 ----SLLQHPQGVIGVFKQKVQP-ESETPLGQTLTIALDGVQDPGNLGTIIRIADWFGIR 111
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++CS D ++ KV++A
Sbjct: 112 NIICSIDTADCWNPKVVQAT 131
>gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 260
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK--ELP-LPEDVPQHRVDYKNIQL 66
R +G + EG++ L L +L+ +F+++ + K EL LP + + V+
Sbjct: 26 RRSEGRFLAEGRK-LCPELARGAQLETLFYTESAMAKCPELAGLPGE--HYLVEDHVADK 82
Query: 67 WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
+D+ T G+ G+F P H + + L + + ++DPGN+G++LR AA G V+
Sbjct: 83 LADVGTHQGVFGVFRTPVHTLDEVKAGGRYLAL--ERVQDPGNVGTLLRSAAAFGFDGVI 140
Query: 127 CSRGCVDIYDNKVIRAA 143
S GC +Y K +RA+
Sbjct: 141 LSDGCASVYAPKTLRAS 157
>gi|363899336|ref|ZP_09325845.1| hypothetical protein HMPREF9625_00505 [Oribacterium sp. ACB1]
gi|395208468|ref|ZP_10397709.1| RNA methyltransferase, TrmH family [Oribacterium sp. ACB8]
gi|361958376|gb|EHL11675.1| hypothetical protein HMPREF9625_00505 [Oribacterium sp. ACB1]
gi|394706049|gb|EJF13573.1| RNA methyltransferase, TrmH family [Oribacterium sp. ACB8]
Length = 265
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV---DY 61
K K+R ++G+ + EG+R+L D ++L + F D ELP R+
Sbjct: 20 KKAKKRREEGYFVGEGERLLRDLPLSSL---VQIFLGEDYRGELPHGLSKEDERIILLSK 76
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
+ ++ S+ + GI+ ++P A D ++ ++I+DPGN+G+I R A G
Sbjct: 77 RAMESISNTESQQGIVAKLKIPTEKKAEGD-----FFLLLEDIQDPGNLGTIFRTAEAAG 131
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+ SR C D++ KV+R+
Sbjct: 132 VSHIFLSRNCTDLFSPKVLRST 153
>gi|375264915|ref|YP_005022358.1| TrmH family RNA methyltransferase [Vibrio sp. EJY3]
gi|369840239|gb|AEX21383.1| RNA methyltransferase, TrmH family [Vibrio sp. EJY3]
Length = 244
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR----- 58
+ +KQR+ G +++G++ +++ ++L +K +F + E + QHR
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELATSSLTVKQIFAT----------AEFLEQHRQELGQ 62
Query: 59 -----VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
++ S LV+ I + E+P+ + P + L I D + DPGN+G+I
Sbjct: 63 FDCIEASLDDLTKASTLVSNNAAIAVVEIPSTKV----PQAKGLMIALDGVSDPGNLGTI 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+RV G + +V S C D Y+ K I A
Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISAT 148
>gi|341819933|emb|CCC56149.1| RNA methyltransferase [Weissella thailandensis fsh4-2]
Length = 259
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
++++K R G +L+G ++ +A+ + KL V + + + ELPL VP +
Sbjct: 21 LQTKKGRLASGTYLLDGWHLVQEAITHDGKLHAVMGTAEQLAEHQEELPL--GVPVFEIT 78
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCA 118
+ + SDLVTP GI LP A+ +P + + D I+DPGN+G+++R
Sbjct: 79 EEIAKKLSDLVTPQGIFAEVSLPN---ATREPQFIHDGAWLFLDAIQDPGNVGTMVRTAD 135
Query: 119 AVGARQVVCSRGCVDIYDNKVIRA 142
A G VV G VD Y K +RA
Sbjct: 136 AAGFAGVVFGHGSVDPYSPKALRA 159
>gi|345880788|ref|ZP_08832329.1| hypothetical protein HMPREF9431_00993 [Prevotella oulorum F0390]
gi|343922022|gb|EGV32730.1| hypothetical protein HMPREF9431_00993 [Prevotella oulorum F0390]
Length = 251
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R ++ + EG +++ D L +V +W E+P + H V
Sbjct: 13 LQLKKNRLRERLFIAEGHKVVGDLLTVMPAHTLVATEEWTATHEVP--QTTALHIVSEDE 70
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+Q S L P ++G+F P ++ D L++ D I+DPGN+G+I+R+ G
Sbjct: 71 LQSVSLLQHPQQVLGLFPYP--DVSDFDIPLTQLSLALDGIQDPGNLGTIIRMADWFGIA 128
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+ CS + Y+ KV++A
Sbjct: 129 HIFCSPNTAEAYNPKVVQAT 148
>gi|158334661|ref|YP_001515833.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
gi|158304902|gb|ABW26519.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
Length = 261
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 23/156 (14%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ---------WDILKELPLP 51
M ++ K R ++G L+LEG +L A + N ++V ++ W +++
Sbjct: 13 MRKLQQVKHRRQQGKLLLEGTHLLQSAWEQNWSFEIVCYTDRWQAKYPQIWQQIQD---- 68
Query: 52 EDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLP---LNIVCDNIRDPG 108
RV + +Q + V P G++ + PA P SLP L + + I+DPG
Sbjct: 69 RTTRLERVSPEVLQATATTVHPDGVVAVISRPATP-------SLPIQTLGLALETIQDPG 121
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
N+G+++R A ++ ++ C D+ KV+RA+A
Sbjct: 122 NLGTLIRTSVATQVEGLLLNQQCADLESPKVLRASA 157
>gi|398830554|ref|ZP_10588740.1| rRNA methylase [Phyllobacterium sp. YR531]
gi|398213991|gb|EJN00575.1| rRNA methylase [Phyllobacterium sp. YR531]
Length = 289
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
+K R+++G + EG +++IDAL +K + +S+ K L E V
Sbjct: 39 KKFRDQQGVFLAEGLKLVIDALDLGWTIKTLVYSKAG--KGNSLVEQVAARTVAKGGDVL 96
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V+ K I + P ++G+F+ H ++++ P + + D +RDPGN+G+I+R
Sbjct: 97 EVNEKIISAITRRDNPQMVVGVFQQNLHALSAVRPEGNDVFVALDRVRDPGNLGTIIRTA 156
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA+ ++ D + + +RA
Sbjct: 157 DAAGAKGIILIGDTTDPFSLETVRAT 182
>gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
gi|300074293|gb|ADJ63692.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
SmR1]
Length = 263
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
+L+ + T +G+F L A P+AS A ++ D ++DPGN+GSILR AA G RQ
Sbjct: 84 KLYDAVSTVDNGVGLFLLVATPVASAPKALTESAVLLDGLQDPGNLGSILRSAAAAGVRQ 143
Query: 125 VVCSRGCVDIYDNKVIRA 142
V CS G V + KV+RA
Sbjct: 144 VFCSPGTVAAWSPKVLRA 161
>gi|339007650|ref|ZP_08640224.1| putative RNA methyltransferase [Brevibacillus laterosporus LMG
15441]
gi|338774853|gb|EGP34382.1| putative RNA methyltransferase [Brevibacillus laterosporus LMG
15441]
Length = 275
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 19/154 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW-----DILKELPLPEDVPQHR 58
++++K RE G ++EG+ ++ +AL +N+++ + F + +++ L D P
Sbjct: 20 LQTKKGREAAGRFLIEGEHLVEEALLSNMEVVTLLFDEGKGLPATVMRALEAFSD-PVKC 78
Query: 59 VDYKNIQL--WSDLVTPPGIIGIFELPAH-------PIASIDPASLPLNIVCDNIRDPGN 109
+ ++ L S+ TP GI+ ++ ++ + D L ++ D ++DPGN
Sbjct: 79 ISTTDVVLSKLSETKTPQGIVAEVKMRSNDWDTEWKKVVKYDF----LILILDELQDPGN 134
Query: 110 MGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+G+I+R A G V+ RG VD+Y+ KV+R+
Sbjct: 135 VGTIMRTAEAAGVDAVLMGRGSVDLYNGKVLRST 168
>gi|319953770|ref|YP_004165037.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
14237]
gi|319422430|gb|ADV49539.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
14237]
Length = 240
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R ++EG + + + LK++ ++ VF S D E VD K
Sbjct: 13 LQLKKNRNLHQLFVVEGLKTIQELLKSSFEVYSVF-STDDHFVEENSAFSALISSVDLKK 71
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S L TP G +G+F++ + A D A + + D I+DPGN+G+I+R+C G +
Sbjct: 72 M---SSLNTPNGYLGVFKM-SQKKAIHDNAWV---VAVDTIQDPGNLGTIIRLCDWFGIK 124
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+VCS VD Y+ KVI+A
Sbjct: 125 DLVCSSDTVDCYNPKVIQAT 144
>gi|222084674|ref|YP_002543203.1| rRNA methylase [Agrobacterium radiobacter K84]
gi|398379612|ref|ZP_10537732.1| rRNA methylase [Rhizobium sp. AP16]
gi|221722122|gb|ACM25278.1| rRNA methylase protein [Agrobacterium radiobacter K84]
gi|397722244|gb|EJK82788.1| rRNA methylase [Rhizobium sp. AP16]
Length = 286
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ ++K RE+ G + EG +++IDAL+ ++ + +++ K PL E V
Sbjct: 33 LTNKKSREESGAFLAEGLKLVIDALELGWTIRTLVYAK--AAKGKPLVEQVAAKTVAAGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIF+ P+ + P + + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIASITRRDNPQMVVGIFDQRWRPLRDVRPKAGETWVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ D + + +RA
Sbjct: 151 RTADAAGASGVILVGETTDPFSLETVRA 178
>gi|119946835|ref|YP_944515.1| tRNA/rRNA methyltransferase SpoU [Psychromonas ingrahamii 37]
gi|119865439|gb|ABM04916.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
Length = 247
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI------LKELPLPEDVPQH 57
++ +KQR+K G +++G++ + + ++ +K +F + I L E L +
Sbjct: 13 LEQKKQRKKNGLFLVQGEKNVGELFNSDFTVKQLFATSSYINKNSRALNEFGLVSLTIEA 72
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
D ++ L++ ++ + E P+ I L L V D + DPGN+G+I+RV
Sbjct: 73 TED--ELKKAGTLISNNSVLAVVECKIMPLPQIQKDELIL--VLDQVGDPGNLGTIIRVA 128
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
G + ++CS C D Y+ KVI A+
Sbjct: 129 DWYGIKHIICSPDCADFYNPKVIAAS 154
>gi|397904504|ref|ZP_10505414.1| FIG011178: rRNA methylase [Caloramator australicus RC3]
gi|397162459|emb|CCJ32748.1| FIG011178: rRNA methylase [Caloramator australicus RC3]
Length = 253
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 8/142 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDY 61
+K +K R++ ++EG R + +A+K N ++ +F+S D L DV ++ V+
Sbjct: 15 LKQKKYRDELNKFLIEGVRFVEEAIKENF-VEYIFYSNKILDSKYSYILDWDVKKYEVNE 73
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
I+ SD P G+ + + D ++ D ++DPGN+G+I+R A G
Sbjct: 74 DVIKELSDTENPQGVAAVCRKRENRADLKD-----FVVIADGVQDPGNLGTIIRTLDAAG 128
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
A ++ +G VD Y++K +R+
Sbjct: 129 ADALIIIKGTVDPYNSKTLRST 150
>gi|291547784|emb|CBL20892.1| rRNA methylases [Ruminococcus sp. SR1/5]
Length = 258
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL---PEDVPQHRVDYKNI 64
K R ++G + EG+++ ++A ++ + VF S+ + ++ L E P V
Sbjct: 21 KARREQGLFVAEGRKMFLEAPES--WVSQVFVSE-TVSRDGELMSQAEKYPCEIVKDSVF 77
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
+ D TP GI+ + +LP+ + PL +V ++++DPGN G+ILR G
Sbjct: 78 RQMCDTKTPQGILTVLKLPSWSEEEVLAGKNPLVMVLEDLQDPGNAGTILRTGEGAGVSG 137
Query: 125 VVCSRGCVDIYDNKVIRAA 143
V ++ CVDI + KVIR+
Sbjct: 138 VFLTKTCVDITNPKVIRST 156
>gi|375145328|ref|YP_005007769.1| tRNA/rRNA methyltransferase SpoU [Niastella koreensis GR20-10]
gi|361059374|gb|AEV98365.1| tRNA/rRNA methyltransferase (SpoU) [Niastella koreensis GR20-10]
Length = 245
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVF-FSQWDILKELPLPEDVPQHRVDYK 62
+ +K R+ + + EG +++ + L A L L+ ++ +W L V + +
Sbjct: 13 LSHKKLRDTEEVFVAEGPKLINELLIAGLPLQQLYAVKEWIAEHGRQLSGSVTE--ITPS 70
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ S L TP ++GIF+ P + PA L+++ D I+DPGN+G+I+R G
Sbjct: 71 ELERISHLQTPNQVLGIFKKPV--FTANRPARNTLSLMLDTIQDPGNLGTIIRCADWFGI 128
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
QV CS C D Y KV+++
Sbjct: 129 TQVFCSVDCADAYGPKVVQST 149
>gi|167647056|ref|YP_001684719.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
gi|167349486|gb|ABZ72221.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
Length = 262
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
RK+RE+ G + EG +I+I+A+ K++ + + P+ + Q
Sbjct: 22 RKEREQSGLFLAEGLKIVIEAIDCGHAPKILMYG--PDAADHPMLQKAAQACFKAGGEVI 79
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V+ + ++ S P ++G+F P+++I P S P + +RDPGN+G+++R
Sbjct: 80 EVNREILEKVSRRDNPQAVVGVFTQVYTPLSAIVPESAPCWVAMQAVRDPGNLGTVIRTA 139
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A G V+ CVD Y + +RA
Sbjct: 140 DAAGCGGVILVGDCVDPYSVEGVRA 164
>gi|254505367|ref|ZP_05117514.1| rRNA methylase [Vibrio parahaemolyticus 16]
gi|219551484|gb|EED28462.1| rRNA methylase [Vibrio parahaemolyticus 16]
Length = 244
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ ++L +K +F +Q + + +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSSLTVKQIFATQEFLAQNQSELSGFECIEASLDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P+ P + L I D + DPGN+G+I+RV G +
Sbjct: 73 LTKASTLVSNNAAIAVVEIPSVET----PKAQGLMIALDGVSDPGNLGTIIRVADWYGIK 128
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+V S C D Y+ K I A
Sbjct: 129 HIVASTDCADPYNPKTISAT 148
>gi|340616766|ref|YP_004735219.1| tRNA/rRNA methyltransferase [Zobellia galactanivorans]
gi|339731563|emb|CAZ94828.1| tRNA/rRNA methyltransferase [Zobellia galactanivorans]
Length = 240
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI-LKELPLPEDVPQHRVDYK 62
+ +K R + + EG +++ + + ++ K+ V+ + +I + L E V + V+ K
Sbjct: 13 LHQKKYRNRHNLFVAEGIKVVSELVASDFKVNAVYSTDAEIEVGAAGLVELVSE--VELK 70
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S L P ++G+FE+P + P +V D++RDPGN+G+I+R+C G
Sbjct: 71 KM---SALTAPNKVLGVFEIPK----ARKPDLTGWVLVLDDVRDPGNLGTIIRLCDWFGI 123
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+VCS VD Y+ K ++A
Sbjct: 124 EHLVCSLNTVDCYNPKTLQAT 144
>gi|403529943|ref|YP_006664472.1| tRNA/rRNA methyltransferase [Bartonella quintana RM-11]
gi|403232015|gb|AFR25758.1| tRNA/rRNA methyltransferase [Bartonella quintana RM-11]
Length = 273
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ +K R ++G M EG +++IDAL ++ + FS+ I E++ H
Sbjct: 26 LSQKKNRNREGLFMAEGLKLVIDALNLEWTIQTLIFSKSKIGD--TAIENIAAHTIANGG 83
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ K ++ + P IGIF+ P+ I + + + D +RDPGN+G+I+
Sbjct: 84 LVIKASKKVMESITRRDNPQTAIGIFKQQWQPLEMIKRRNEDVYVALDRVRDPGNLGTII 143
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA+ V+ D + + +RA
Sbjct: 144 RTVDAVGAKGVILIGETTDPFSLETVRAT 172
>gi|118464222|ref|YP_882308.1| TsnR protein [Mycobacterium avium 104]
gi|254775574|ref|ZP_05217090.1| TsnR protein [Mycobacterium avium subsp. avium ATCC 25291]
gi|118165509|gb|ABK66406.1| TsnR protein [Mycobacterium avium 104]
Length = 263
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL--PEDVPQHRVDYKNIQLW 67
R + + EG L++A ++ VF ++ + PL D P H + + +
Sbjct: 21 RRRAARFLAEGPN-LVEAAAGRGLVRDVFVTEAAQQRYAPLLAALDCPVHLITERAAKAL 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + +LPA + + S L V I +PGN G+++R+ A+GA V+
Sbjct: 80 SDTVTPAGLVAVCDLPATGLRDVLAGSPRLIAVAVQISEPGNAGTLIRLSDAMGAAGVLL 139
Query: 128 SRGCVDIYDNKVIRAAA 144
+ VD Y+ K +RA+A
Sbjct: 140 AGHSVDPYNGKCLRASA 156
>gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase SpoU [Geobacillus sp. WCH70]
gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
Length = 254
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP---LPEDVPQHRVDYK 62
++K +EK G ++EG ++ +ALK++ L + D KE+P +P V +
Sbjct: 20 TKKGQEKMGLFLIEGFHLVEEALKSHAPLVELIV---DEKKEIPPSWNAGHLPVTIVTEE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
++ SD TP GI + E ++ A++ ++ D ++DPGN+G+++R A G
Sbjct: 77 VMKAISDTETPQGIAAVCEQFSYGDIDWTQANV---LLIDAVQDPGNIGTMIRTADAAGI 133
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
V+ GC D+Y+ KVIRA
Sbjct: 134 DAVILGEGCADLYNPKVIRAT 154
>gi|49473698|ref|YP_031740.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
gi|49239201|emb|CAF25517.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
Length = 278
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ +K R ++G M EG +++IDAL ++ + FS+ I E++ H
Sbjct: 31 LSQKKNRNREGLFMAEGLKLVIDALNLEWTIQTLIFSKSKIGD--TAIENIAAHTIANGG 88
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ K ++ + P IGIF+ P+ I + + + D +RDPGN+G+I+
Sbjct: 89 LVIKASKKVMESITRRDNPQTAIGIFKQQWQPLEMIKRRNEDVYVALDRVRDPGNLGTII 148
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA+ V+ D + + +RA
Sbjct: 149 RTVDAVGAKGVILIGETTDPFSLETVRAT 177
>gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
Length = 223
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 18 LEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQLWSDLVTP 73
+EG ++ +A ++ ++K +F +Q +KE L + +++ V + + SDL TP
Sbjct: 1 MEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTP 59
Query: 74 PGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVD 133
GI+ + L + L L DN++DPGN+G+++R A G V+ +G D
Sbjct: 60 QGILAVMTLTSEDTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFGMAGVLLGKGTAD 115
Query: 134 IYDNKVIRA 142
IY KV+R+
Sbjct: 116 IYSTKVLRS 124
>gi|416353051|ref|ZP_11681452.1| RNA methyltransferase, TrmH family [Clostridium botulinum C str.
Stockholm]
gi|338195649|gb|EGO87904.1| RNA methyltransferase, TrmH family [Clostridium botulinum C str.
Stockholm]
Length = 260
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 28/155 (18%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----------WDILKELP--- 49
+ +K R ++G ++EG R + +ALK+ ++ V S+ +D+++E
Sbjct: 18 LSKKKYRIQEGKFLVEGFRFVQEALKSTFEVPYVLISENSNEKCKSFNIYDLIQENTKVY 77
Query: 50 -LPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPG 108
+ +D+ + D N P GI+ + + + I+ ++ D I+DPG
Sbjct: 78 LVRDDILKELCDTNN---------PQGILAVVN---NKVMEIEDQK-GFYVLVDRIQDPG 124
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
NMG+I+R A GA V+ ++G VD+Y++K +R+
Sbjct: 125 NMGTIIRSANASGALGVITTKGTVDVYNDKTLRST 159
>gi|114566620|ref|YP_753774.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337555|gb|ABI68403.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 264
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ---HRVD 60
+K + R+++ ++EGK++L +ALK L+ +F + L + P+ + VD
Sbjct: 18 LKQKSFRKQEACFLIEGKKMLEEALKHPKLLRQIFIEAELASEYTELYQQHPEWECYVVD 77
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ ++ SD TPPGI+ + ++P+ + L + D I DPGN+G+I+R A+
Sbjct: 78 KRLMKHISDTETPPGIVALCQIPSWSREEFLSQNAFL-LYLDRIADPGNLGTIIRSGWAL 136
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++ S VD + KV+RA+
Sbjct: 137 GVDGILLSPESVDPFSPKVVRAS 159
>gi|395789052|ref|ZP_10468582.1| hypothetical protein ME9_00299 [Bartonella taylorii 8TBB]
gi|395431186|gb|EJF97213.1| hypothetical protein ME9_00299 [Bartonella taylorii 8TBB]
Length = 284
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
+ +K R ++G M EG +++IDAL ++ + FS+ + E V
Sbjct: 26 LSQKKNRNREGLFMAEGLKLVIDALNLGWTIQTLIFSKSKMENTAIENTAARTVANGGFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K Q + +T P +IGIF+ P+ I + + D +RDPGN+G+I+R
Sbjct: 86 IKASQKVMESITRRDNPQTVIGIFKQQWQPLEMIKGQVNDVYVALDRVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 146 ADAVGAKGVILIGETTDPFSPETVRAT 172
>gi|116490953|ref|YP_810497.1| rRNA methylase [Oenococcus oeni PSU-1]
gi|290890427|ref|ZP_06553502.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
gi|419758898|ref|ZP_14285210.1| rRNA methylase [Oenococcus oeni AWRIB304]
gi|419857804|ref|ZP_14380507.1| rRNA methylase [Oenococcus oeni AWRIB202]
gi|419859596|ref|ZP_14382250.1| rRNA methylase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421185353|ref|ZP_15642764.1| rRNA methylase [Oenococcus oeni AWRIB318]
gi|421186403|ref|ZP_15643796.1| rRNA methylase [Oenococcus oeni AWRIB418]
gi|421188830|ref|ZP_15646162.1| rRNA methylase [Oenococcus oeni AWRIB419]
gi|421189619|ref|ZP_15646933.1| rRNA methylase [Oenococcus oeni AWRIB422]
gi|421190923|ref|ZP_15648207.1| rRNA methylase [Oenococcus oeni AWRIB548]
gi|421193556|ref|ZP_15650802.1| rRNA methylase [Oenococcus oeni AWRIB553]
gi|421195401|ref|ZP_15652609.1| rRNA methylase [Oenococcus oeni AWRIB568]
gi|421197514|ref|ZP_15654689.1| rRNA methylase [Oenococcus oeni AWRIB576]
gi|116091678|gb|ABJ56832.1| rRNA methylase [Oenococcus oeni PSU-1]
gi|290479823|gb|EFD88472.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
gi|399904353|gb|EJN91809.1| rRNA methylase [Oenococcus oeni AWRIB304]
gi|399964163|gb|EJN98817.1| rRNA methylase [Oenococcus oeni AWRIB419]
gi|399964534|gb|EJN99175.1| rRNA methylase [Oenococcus oeni AWRIB318]
gi|399967356|gb|EJO01838.1| rRNA methylase [Oenococcus oeni AWRIB418]
gi|399971715|gb|EJO05954.1| rRNA methylase [Oenococcus oeni AWRIB553]
gi|399972709|gb|EJO06908.1| rRNA methylase [Oenococcus oeni AWRIB422]
gi|399973619|gb|EJO07784.1| rRNA methylase [Oenococcus oeni AWRIB548]
gi|399975123|gb|EJO09191.1| rRNA methylase [Oenococcus oeni AWRIB576]
gi|399975826|gb|EJO09861.1| rRNA methylase [Oenococcus oeni AWRIB568]
gi|410496613|gb|EKP88096.1| rRNA methylase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|410497275|gb|EKP88750.1| rRNA methylase [Oenococcus oeni AWRIB202]
Length = 255
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL-PLPEDVPQHRVDYK 62
+++ K REK G ML+G ++ +AL ++ V ++ + + L +P+ VP +V +
Sbjct: 18 LQTLKGREKSGTYMLDGWHLVQEALNQAAPIQAVIATEEQMDQHLIDVPQGVPAFQVSEE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ + TP GI LP + S DP + ++ D I+DPGN+G+++R A
Sbjct: 78 VARHIAKTNTPQGIFAQTSLPNN---SFDPKYVHNGSWLLLDRIQDPGNVGTLIRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G V S+ D ++ KV+RA
Sbjct: 135 GFSGVALSKESADPFNPKVVRA 156
>gi|349573768|ref|ZP_08885741.1| TrmH family RNA methyltransferase [Neisseria shayeganii 871]
gi|348014724|gb|EGY53595.1| TrmH family RNA methyltransferase [Neisseria shayeganii 871]
Length = 261
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 13/147 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVF-----FSQWDILKELP--LPEDVPQ 56
++S + R + G + EG +L L + ++ V+ FSQ + L DV Q
Sbjct: 19 LQSGRARRQHGQAVFEGVHLLSACLDSGIRPLKVYVPAHRFSQPETSALLARLAANDVVQ 78
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
V + +Q + L I + LP P+ + D + +V + I+DPGN+G+ILR
Sbjct: 79 --VGGEALQKITSLTDAEEITALIALP--PVPAFDGGAD--CVVLERIQDPGNIGTILRS 132
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AA G +QVV +GC DI+ KV+RA
Sbjct: 133 AAAAGVKQVVLDKGCADIWSPKVLRAG 159
>gi|78186184|ref|YP_374227.1| SpoU rRNA methylase [Chlorobium luteolum DSM 273]
gi|78166086|gb|ABB23184.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
Length = 265
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 21/154 (13%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMV-----------FFSQWDILK-ELPLP 51
++ RK R+++G + EG R + + L M+ FF + I L L
Sbjct: 20 LQQRKYRDREGLFIAEGLRTVRELLGQMAGADMLDCLICTAEGLAFFPESSIYSGSLFLA 79
Query: 52 EDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS-LPLNIVCDNIRDPGNM 110
+ +RV + +P G++G+F P P+ P S L + D ++DPGN
Sbjct: 80 SEDDFNRV--------AGTSSPQGVLGVFRQPVFPLPYERPYSGRALLVALDEVQDPGNA 131
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
G+ILR A +GA ++ G VD+Y+ K +R++A
Sbjct: 132 GTILRTAAWLGADGLLAGPGTVDLYNAKTVRSSA 165
>gi|399046280|ref|ZP_10738738.1| rRNA methylase, putative, group 3 [Brevibacillus sp. CF112]
gi|433543519|ref|ZP_20499924.1| RNA methyltransferase [Brevibacillus agri BAB-2500]
gi|398055641|gb|EJL47702.1| rRNA methylase, putative, group 3 [Brevibacillus sp. CF112]
gi|432185193|gb|ELK42689.1| RNA methyltransferase [Brevibacillus agri BAB-2500]
Length = 271
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL-----KELP-LPEDVPQHRVD 60
+K RE++G ++EG ++ +AL + ++ + + Q L + L P+
Sbjct: 23 KKGREEQGRYLVEGAHLVEEALNSGAEVTTILYDQERSLDPACQRALANHPQATQVIAAS 82
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHP----IASIDPASLPLNIVCDNIRDPGNMGSILRV 116
+ S+ +P GI+ + A + + L + D I+DPGN+G+ILR
Sbjct: 83 AAVLAKLSETKSPQGIVAAVKKTASQWDEWVDKLSAKENALLLFLDEIQDPGNLGTILRT 142
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRA 142
A G VV +G VDIY+ KV+RA
Sbjct: 143 AEAAGVDGVVLGKGSVDIYNGKVVRA 168
>gi|390449513|ref|ZP_10235118.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor aquibiodomus
RA22]
gi|389664010|gb|EIM75521.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor aquibiodomus
RA22]
Length = 286
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW----DILKELPLPEDVPQHRV 59
+ +K R+++ + EG++++IDA A ++ + +++ + ++ L V
Sbjct: 31 LAQKKYRDREHAFIAEGQKLVIDAFDAGWTIRTLLYAKAGRGNEAVERLAARTVASGGLV 90
Query: 60 DYKNIQLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
+ ++ S + P ++G+FE + ++ PA + + D +RDPGN+G++LR
Sbjct: 91 LIVSEKVLSTITKRDNPQMVVGVFEQKTVKLETVKPADGDVWVALDRVRDPGNLGTVLRT 150
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ C D + + +RA
Sbjct: 151 VDAVGAKGVILVGDCTDPFSFETVRAT 177
>gi|304439586|ref|ZP_07399490.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371898|gb|EFM25500.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 252
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 7 RKQREKKGWLMLEGKRILIDALK------ANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+K R K+ + EG ++ +AL ++ K F ++L+E +P D+ V
Sbjct: 26 KKYRIKENLFLAEGAVVIREALDFVDPKYVAIEDKKDFGEIINLLEERKIPYDIYDREV- 84
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ SD TP GIIG FE+ L L D ++DPGN+G+I+R A
Sbjct: 85 ---FETLSDTKTPQGIIGYFEVENKTFEPKPGKYLYL----DGVKDPGNIGTIIRTSEAF 137
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G V+ S C ++Y KV+R+
Sbjct: 138 GIDGVLLSSECAELYSPKVVRST 160
>gi|359462395|ref|ZP_09250958.1| tRNA/rRNA methyltransferase [Acaryochloris sp. CCMEE 5410]
Length = 261
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-QWDI----LKELPLPEDVP 55
M ++ K R ++G L+LEG +L A + N ++V ++ +W L + V
Sbjct: 13 MRKLQQVKHRRQQGKLLLEGTHLLQSAWEQNWSFEIVCYTDRWQAKYPQLWQQIQGRTVR 72
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
+V + +Q + V P G++ + PA P I L + + I+DPGN+G+++R
Sbjct: 73 LEQVSPEVLQATATTVHPDGVVAVVSRPATPALPIQT----LGLALETIQDPGNLGTLIR 128
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
A ++ ++ C D+ KV+RA+A
Sbjct: 129 TAVATQVEGLLLNQQCADLESPKVLRASA 157
>gi|345023422|ref|ZP_08787035.1| rRNA methylase [Ornithinibacillus scapharcae TW25]
Length = 245
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE-LPLPE---DVPQHRV 59
+ +R+ R K ++EG ++ +A+ +N +++ + I+KE + +PE +P V
Sbjct: 16 LHNRRDRMKSNTFLIEGFHLIEEAIASNWQIEEI------IIKENVTVPEWVTSLPVVEV 69
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
Q S TP GI + + D ++ D I+DPGN+G+I+R A
Sbjct: 70 SENVFQHISQTKTPQGIAAVVHFKQFNDITGDYV-----LLLDRIQDPGNLGTIIRTADA 124
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V+ G VD+Y++KVIR+
Sbjct: 125 AGFDAVILGEGTVDVYNDKVIRST 148
>gi|282877059|ref|ZP_06285902.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
gi|281300830|gb|EFA93156.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
Length = 288
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 14/149 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW------DILKELPLPEDVPQH 57
++++K R G + EG +++ D L + +V QW +ILK
Sbjct: 41 LQTKKGRLAHGTFVAEGPKVVHDLLSSFQPELIVATEQWLERHEDEILKGNQGDRRPQII 100
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFE---LPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V +Q S L P ++ +FE +PAH IDP L + D I+DPGN+G+I+
Sbjct: 101 AVSPDELQKISLLQHPQEVLAVFEQRHMPAH----IDPTH-ELVLALDGIQDPGNLGTII 155
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R+ G R V+CS D+Y+ KV++A
Sbjct: 156 RIADWFGIRNVICSEDTADVYNPKVVQAT 184
>gi|206900335|ref|YP_002251024.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
gi|206739438|gb|ACI18496.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
Length = 266
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPE--DVPQ 56
++ + + +R+K ++EG R++ DA + + ++ + S+ W+ +E L +
Sbjct: 15 VIKLHDKNKRKKLNKCLVEGWRLIQDAKENGISIEKLIISKSLWNKKREEILEKFSSCDL 74
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGSILR 115
+ V+ + S + TPPGI+G+F L P I + + D+I+DPGN+G+I+R
Sbjct: 75 YIVEDNLMNKISLMETPPGIMGVFPLFLSPKWEILKNKDNKIVLYSDDIQDPGNLGTIIR 134
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
V VG + S VD Y+ KVIRA+
Sbjct: 135 VADGVGVDAFILSENTVDPYNYKVIRAST 163
>gi|242373369|ref|ZP_04818943.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242348732|gb|EES40334.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 270
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 14 GWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTP 73
G ++EG ++ +A ++ + ++ +F + D E L + ++ K + S VTP
Sbjct: 52 GQALIEGIHLIEEAQQSGITIQQLFVIEPDRTDEALLNYANETYEINMKVAEALSGTVTP 111
Query: 74 PGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVD 133
G + + P + ++ ++ D I+DPGN+G+++R A G +V +G D
Sbjct: 112 QGFFAVIDKPQYDVSKAQQV-----LLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTAD 166
Query: 134 IYDNKVIRAA 143
Y +KV+RA+
Sbjct: 167 PYQDKVMRAS 176
>gi|219128759|ref|XP_002184573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404023|gb|EEC43972.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 343
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 18/155 (11%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALK---ANLKLKMVFFS--QWD-----ILK-----EL 48
+ RK+R ++ ++EG R+++D LK + ++ +F + +W+ IL+ E
Sbjct: 74 LNKRKKRLEQRETVVEGPRMVVDLLKQPQTHHLVRSIFIASDKWEQYYPEILRAVGEDES 133
Query: 49 PLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPG 108
LP +P V SD +TP GI+ I E+P + D PL +V D + DPG
Sbjct: 134 RLPLTLP---VTPPVFAACSDTITPQGILAITEIPIFSLERRDAPQNPLYLVLDGVSDPG 190
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
N+G++LR A G V+ G D + K IR+A
Sbjct: 191 NLGTLLRSSVATGVAGVLLLPGSCDPWAPKAIRSA 225
>gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
J-10-fl]
gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
Length = 260
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 25/152 (16%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP----------LPEDV 54
+S + R ++ ++EG R++ DAL A ++++V ++ + LP
Sbjct: 20 ESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLATTTAGTALLNRLRHLPHCF 79
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIF---ELPAHPIASIDPASLPLNIVCDNIRDPGNMG 111
P I +D P G++ ELP P L +V D I+DPGN+G
Sbjct: 80 P---ATPAVIVAAADTEQPQGVVAAVTWPELPPRP---------GLRLVLDAIQDPGNVG 127
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
++LR AA G V+C+ G VD ++ KV RAA
Sbjct: 128 TLLRSAAAAGVGLVMCAPGTVDPFNPKVARAA 159
>gi|338732256|ref|YP_004670729.1| putative rRNA methylase [Simkania negevensis Z]
gi|336481639|emb|CCB88238.1| putative rRNA methylase [Simkania negevensis Z]
Length = 268
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 2 VYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK-------ELPLPEDV 54
V ++ R++REK ++EG R L+ A++ KL+ +F+S L E L +V
Sbjct: 16 VKLRERREREKTQTFLIEGYRELLRAVEGQAKLETLFYSPSHFLGSNENNLIERILSLNV 75
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V + + S P G++ I + + +P +V + I PGN+GSIL
Sbjct: 76 EVIEVSKEVFEKLSYRDRPDGLLAIALQQHLSLEELSLGEVPFILVAEAIEKPGNLGSIL 135
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R C AVG ++ D+++ V+R++
Sbjct: 136 RSCDAVGVDALLLCDRTTDVHNPNVVRSS 164
>gi|310827804|ref|YP_003960161.1| RNA methyltransferase [Eubacterium limosum KIST612]
gi|308739538|gb|ADO37198.1| RNA methyltransferase [Eubacterium limosum KIST612]
Length = 290
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 25/163 (15%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-QW---------DILKELPL 50
++ +K +K R+++ +LEG ++ ++A ++ VF + QW K L
Sbjct: 30 VIKLKQKKNRDREKQFVLEGTKLFMEAEAWKVEFTAVFVTPQWIEGAEETVKSAFKRLK- 88
Query: 51 PEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPI-ASIDPASLPLN---------IV 100
+P VD + S L P G++ AH I AS ++
Sbjct: 89 DTGIPVFTVDTSVFEAMSALKMPEGVL----CTAHKIDASEKFFEKKCKKNGKKCLSYVI 144
Query: 101 CDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
D+++DPGN+G+I+R A G ++CS DIY+ KV+R A
Sbjct: 145 LDDVQDPGNVGTIIRTADAAGFDGIICSSKTADIYNEKVLRGA 187
>gi|192359547|ref|YP_001983124.1| rRNA methylase [Cellvibrio japonicus Ueda107]
gi|190685712|gb|ACE83390.1| rRNA methylase [Cellvibrio japonicus Ueda107]
Length = 240
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV-DYK 62
+ +K R + G ++EG+ ++++ KA + SQ + + + + RV K
Sbjct: 9 LHQKKYRNQFGHFLVEGEHLVLELQKAAQLSPALLHSQLLVTDKYQHWQSPFETRVISDK 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ +D TPPGI+ + +P P A +D I I+DPGN+G+ILR A G
Sbjct: 69 QMAQIADTQTPPGIVAVAPVPDIPGALVDGER---AIYLHEIQDPGNLGTILRTLAWFGG 125
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ + S G VD Y+ KV+R++
Sbjct: 126 FRCLLSPGSVDPYNPKVVRSS 146
>gi|86356050|ref|YP_467942.1| rRNA methylase [Rhizobium etli CFN 42]
gi|86280152|gb|ABC89215.1| rRNA methylase protein, TrmH family [Rhizobium etli CFN 42]
Length = 286
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ ++K RE+ G + EG +++IDA++ ++ + +++ K PL E +
Sbjct: 33 LTNKKSREESGTFLAEGLKLVIDAIELGWTIRTLVYAK--AAKGKPLVEQMAARTVASGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIFE P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIAAITRRDNPQMVVGIFEQRWAPLKGIRPQEGETWVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA ++ D + + +RA
Sbjct: 151 RTADAAGASGIILIGETTDPFSLETVRA 178
>gi|383810421|ref|ZP_09965915.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 306
str. F0472]
gi|383356789|gb|EID34279.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 306
str. F0472]
Length = 231
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 21/140 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K REK G + EG +++ D L A + +F ED+ ++
Sbjct: 13 LETKKGREKAGLFVAEGPKVVNDLLHAGFTAENIF-------------EDI-------ED 52
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
I+ S L P ++G+F+LP + + P + L + D ++DPGN+G+I+RV G +
Sbjct: 53 IKKISFLQHPQSMLGVFKLPRNEHYTEFPIT-QLVLALDGVQDPGNLGTIIRVADWFGIK 111
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+ CS D ++ KV++A
Sbjct: 112 DIFCSLDTADCWNPKVVQAT 131
>gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 255
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL-PEDVPQHRVDYK 62
M+S+K R G ++EG I+ +A+K + ++ V + + L +L + P + + +
Sbjct: 18 MQSKKGRLSSGQYIIEGWHIVDEAIKHDQQIDAVIVTDANFLDQLEVDPAVTDTYLITPE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN-IVCDNIRDPGNMGSILRVCAAVG 121
+ S TP G+ + + SI P L + ++ DNI+DPGN+G+++R A G
Sbjct: 78 VAKHISATETPQGVFAVLTTENYH-ESI-PEKLGGSWLMLDNIQDPGNIGTMVRTADAAG 135
Query: 122 ARQVVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 136 MNGVIFGKGTADIYNPKVVRS 156
>gi|451940054|ref|YP_007460692.1| tRNA/rRNA methyltransferase [Bartonella australis Aust/NH1]
gi|451899441|gb|AGF73904.1| tRNA/rRNA methyltransferase [Bartonella australis Aust/NH1]
Length = 275
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ---WDILKELPLPEDVPQHRVD 60
+ +K R + G M EG +++IDAL ++ + FS+ + E V
Sbjct: 26 LSQKKGRNRGGIFMAEGLKLVIDALNLGWTIQTLIFSKNKPGNAAIENAAARTVASGGFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K Q + +T P +IGIF+ PI +I + + I + +RDPGN+G+I+R
Sbjct: 86 IKASQKVMECITHRDNPQTVIGIFKQRWQPIETIKGLANDVYIALERVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 146 ADAVGAKGVILIGETTDPFSPETVRAT 172
>gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268]
gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268]
Length = 260
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV---DY 61
K K+R +KG + EG+R+L+D ++L + + Q D LP + R+
Sbjct: 20 KKAKKRWEKGMFVAEGERLLLDLPASSL---LQLYVQEDYKGALPRGIEKEDSRICILSK 76
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
K ++ S GI+G+ P D L ++ +NI+DPGN+G++ R A G
Sbjct: 77 KAMESISTTEHGQGILGLLRFPKKEKPKGD-----LFLILENIQDPGNLGTLFRTAEAAG 131
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
+ SR VD + KV+R+
Sbjct: 132 VNHIFLSRNTVDPFSPKVVRST 153
>gi|241895044|ref|ZP_04782340.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
gi|241871762|gb|EER75513.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
Length = 259
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK-ELPLPEDVPQHRVDYK 62
++++K R+ +L+G ++ +A++ + KL V + + + + LP VP +
Sbjct: 21 LQTKKGRQASETYLLDGWHLVQEAIQHDGKLHAVMGTAEQLAEHQEELPLGVPVFEITDD 80
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ SDLVTP GI LP+ A+ +P + + D I+DPGN+G+++R A
Sbjct: 81 IAKKLSDLVTPQGIFAEVSLPS---ATREPQFIHDGAWLFLDAIQDPGNVGTMVRTADAA 137
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G VV G VD Y K +RA
Sbjct: 138 GFTGVVFGHGSVDPYSPKALRA 159
>gi|389573817|ref|ZP_10163888.1| ysgA [Bacillus sp. M 2-6]
gi|388426387|gb|EIL84201.1| ysgA [Bacillus sp. M 2-6]
Length = 247
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K+R K G ++EGK ++ +ALK+ + +K + + D+L P D+ + + +
Sbjct: 18 LHTKKERTKTGLFVVEGKHLVEEALKSGV-VKELMVTTPDVLPADIEP-DIELYELSAEA 75
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ TP I + +P + ++ D ++DPGN+G+++R A G
Sbjct: 76 FTAMTETETPQQIAAVCTIPV-----FEEKKYERMLLLDAVQDPGNLGTLIRTADAAGLD 130
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
VV G VD ++ K +R+A
Sbjct: 131 AVVLGDGTVDAFNGKTLRSA 150
>gi|325104097|ref|YP_004273751.1| tRNA/rRNA methyltransferase SpoU [Pedobacter saltans DSM 12145]
gi|324972945|gb|ADY51929.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
Length = 248
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R++ ++EG + + + L + +++ ++ DI L + + +
Sbjct: 13 LQQKKFRKEHNLFIVEGLKSITEFLASKYQVQTIYCLSKDIPNLPKLSQKQKVFEITEQE 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S L P + + E+P + ++ +N+V D ++DPGN+G+I+R G
Sbjct: 73 LTKISSLQNPQEALALIEIPQLDVNVLEIEK-EINLVLDGVQDPGNLGTIIRTADWFGFS 131
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++CS+ VD+Y+ KV++A
Sbjct: 132 NIICSKNTVDVYNPKVVQAT 151
>gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
12653]
gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
12653]
Length = 253
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R ++ +EG + +AL ++ K++ V + D+ E D R+ K + SD
Sbjct: 23 RYEEKLFFVEGLNSVKEALDSDFKVEYVVVGE-DV--EFEFKGDFMLIRIANKLFKKISD 79
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
VTP I+ I +P + + ++ DN++DPGN+G+I+R A G V
Sbjct: 80 TVTPQKIMAIVRMPVYREEDFIKEE-GVYVIADNVQDPGNLGTIIRTADAFGVDAVFTIN 138
Query: 130 GCVDIYDNKVIRAA 143
VDIY+ KV+RA+
Sbjct: 139 NSVDIYNPKVLRAS 152
>gi|347548599|ref|YP_004854927.1| putative rRNA methylase [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346981670|emb|CBW85641.1| Putative rRNA methylase [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 252
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 81/150 (54%), Gaps = 23/150 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKAN-LKLKMVFFSQWDILKELPLPEDVPQHRVDYK 62
+++RK R+K G ++EG ++ +AL+ + L L+++ + K++ +PE+ + D
Sbjct: 18 LQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELL------VSKDVSVPEEWLKGNYDVL 71
Query: 63 NI-----QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN----IVCDNIRDPGNMGSI 113
I S+ +T G+ + +A+ +P + L ++ D ++DPGN+G++
Sbjct: 72 EISTEISHFISETMTEQGVFAV-------VATTEPDMMLLYGKKLLLVDAVQDPGNVGTL 124
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+R A G V+ RG D+Y+ KVIR+A
Sbjct: 125 IRTADAAGYDAVILGRGSADLYNPKVIRSA 154
>gi|375088398|ref|ZP_09734738.1| hypothetical protein HMPREF9703_00820 [Dolosigranulum pigrum ATCC
51524]
gi|374562436|gb|EHR33766.1| hypothetical protein HMPREF9703_00820 [Dolosigranulum pigrum ATCC
51524]
Length = 261
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 75/140 (53%), Gaps = 3/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R + ++EG ++ +A+++ L + + ++ + + + + + +
Sbjct: 27 LTRKKYRHQFNRYLIEGDHLVEEAIRSGLAIHELIATEEALERYEATLQGRDVYIISKQV 86
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ SD VT GI ++P I+ A + +V D ++DPGN+G+++R A G +
Sbjct: 87 AEDISDTVTNQGIFATIDMPD---LQIELADMTQILVLDAVQDPGNVGTLIRTADAAGFQ 143
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G VD+Y++KV+R+A
Sbjct: 144 AVILGQGTVDLYNSKVLRSA 163
>gi|386021711|ref|YP_005939735.1| rRNA methylase [Pseudomonas stutzeri DSM 4166]
gi|327481683|gb|AEA84993.1| rRNA methylase [Pseudomonas stutzeri DSM 4166]
Length = 241
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-VPQHRVDYK 62
+ +K R + G ++EG+ ++++ KA L ++ S+ + + H + +
Sbjct: 9 LHQKKYRAEFGRFLVEGEHLVLELQKAALLNPLLQGSELYVTNAYEQWQSPFKTHLISDR 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ +D TP GI+ + +P P+A+ P + I I+DPGN+G+ILR A G
Sbjct: 69 QMAQIADTKTPQGIVALVPMPGAPVAA--PVAGERAIYLHEIQDPGNLGTILRTLAWFGN 126
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ + S G VD Y+ KV+R++
Sbjct: 127 FRCLLSPGSVDPYNPKVVRSS 147
>gi|299140862|ref|ZP_07034000.1| RNA methyltransferase, TrmH family [Prevotella oris C735]
gi|298577828|gb|EFI49696.1| RNA methyltransferase, TrmH family [Prevotella oris C735]
Length = 250
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K RE+ + EG +++ + L + +V +W P ++V + V
Sbjct: 13 LQLKKNREQTRLFIAEGHKLVEELLAMSRAHTLVATQEWLANHSAPPADEVIE--VTSDE 70
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L P ++G+F A +I+ ++L L + D I+DPGN+G+I+R+ G
Sbjct: 71 LRKVSLLQHPQQVLGLFPFFASDTHAINTSTLSL--MLDGIQDPGNLGTIIRIADWFGIN 128
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+ CS+ D+Y+ KVI+A
Sbjct: 129 DIYCSQETADMYNPKVIQAT 148
>gi|417948584|ref|ZP_12591728.1| RNA methyltransferase, TrmH family [Vibrio splendidus ATCC 33789]
gi|342809531|gb|EGU44648.1| RNA methyltransferase, TrmH family [Vibrio splendidus ATCC 33789]
Length = 244
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE---LPLPEDVPQHRVD 60
+ +KQR+ G +++G++ +++ ++L +K VF + D L E + D + +D
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELFNSDLVVKNVF-ATADFLSENHAALIGFDCVEASLD 71
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ S LV+ I + E+P + P + L I D + DPGN+G+I+RV
Sbjct: 72 --DLTKASTLVSNNAAIAVVEIPKVEL----PEATGLMIALDGVSDPGNLGTIIRVADWY 125
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + +V S C D Y+ K I A
Sbjct: 126 GIKHIVASSDCADPYNPKTISAT 148
>gi|284991463|ref|YP_003410017.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
43160]
gi|284064708|gb|ADB75646.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
43160]
Length = 261
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 10/147 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW------DILKELPLPEDVPQH 57
+ R R+ G + EG++ + +AL ++ V ++ D+L P VP
Sbjct: 17 LTRRAGRDAAGLFLAEGRQAVAEALADPAGVREVLATEAAAAAHRDLLAAAP----VPVR 72
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V K S+ VTP G++ + L P + A L + + DPGN G++LR
Sbjct: 73 LVTDKAAAALSETVTPQGLVAVCALRDVPTDVLVDAPPSLTVALAELADPGNAGTVLRTA 132
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAAA 144
A GA VV G D Y K +R++A
Sbjct: 133 DACGAGAVVFGAGSADPYGGKAVRSSA 159
>gi|289753732|ref|ZP_06513110.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
gi|289694319|gb|EFD61748.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
Length = 260
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPEDVPQHRVDYKNIQLW 67
R + G + EG ++ AL L ++ VF ++ + L + H V + +
Sbjct: 21 RRRAGRFLAEGPNLVAAALARGL-VREVFVTEVAARRHELLLAAHEASVHLVTERAAKAL 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + +LPA + + S L V IR+PGN G+++R+ A+GA V+
Sbjct: 80 SDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAAVIL 139
Query: 128 SRGCVDIYDNKVIRAA 143
+ VD + K +RA+
Sbjct: 140 AGRSVDPCNGKCLRAS 155
>gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
Length = 250
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 27/149 (18%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHR 58
++K+R+K ++EG ++ +ALKAN ++ + S+ WD D+P
Sbjct: 21 TKKERDKTETFLVEGFHLVEEALKAN-QIAEIIISENKDMPPGWDY-------GDIPVTM 72
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN----IVCDNIRDPGNMGSIL 114
V + I +D TP GI + S +P+S + ++ D ++DPGN+G+++
Sbjct: 73 VTEEIIGQLADTETPQGIFAV--------CSQEPSSEEVKGKRFLLIDAVQDPGNLGTMI 124
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G V+ G VD Y+ KV+R+A
Sbjct: 125 RTADAAGIDAVIVGEGSVDAYNPKVLRSA 153
>gi|410667678|ref|YP_006920049.1| tRNA/rRNA methyltransferase SpoU [Thermacetogenium phaeum DSM
12270]
gi|409105425|gb|AFV11550.1| tRNA/rRNA methyltransferase SpoU [Thermacetogenium phaeum DSM
12270]
Length = 277
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQ 56
+K R+ RE G ++EG + DAL+ + + ++ I+ + L ++P
Sbjct: 19 LKRRRHREATGRFLIEGINFVGDALQGGAAIDCLLMTERVRQREKGRIILQHALSREIPF 78
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
V + + +D TP G++ I P + A L + D I+DPGN+G+I+R
Sbjct: 79 FFVKEEILDRLADTETPQGVLAIAPKPVWDENEVIAAEEALLLALDGIQDPGNLGTIIRS 138
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
VG + G VDIY+ KV+R+
Sbjct: 139 GDGVGVNGIFLGGGTVDIYNPKVLRST 165
>gi|422719855|ref|ZP_16776478.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0017]
gi|315032894|gb|EFT44826.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0017]
Length = 258
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN +++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLVEEAVKANAEVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase SpoU [Gallionella capsiferriformans
ES-2]
gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
ES-2]
Length = 258
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKA-----NLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
S + R K G +L+G +L L A ++ L +I P ++D
Sbjct: 21 STRNRNKAGQTLLDGAHLLKAYLDAGYTPRHILLNAAALQDAEITSLRQRITGAPVTQLD 80
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
K S+L TP GI+ + +LP I + A ++ + ++DPGN+GS+LR AA
Sbjct: 81 DKLFAELSELKTPTGILALIDLPPAKIVTARFA-----LLLEAVQDPGNLGSMLRSAAAA 135
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G V S C D + KV+RAA
Sbjct: 136 GCDAVFLSPACADAWSPKVLRAA 158
>gi|403379548|ref|ZP_10921605.1| rRNA methylase [Paenibacillus sp. JC66]
Length = 271
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WDILKELP--LPE-DVPQHRVDY 61
++K R+ + MLEG +LI+ALKA +KL+ + + + I +EL +PE + + V
Sbjct: 21 TKKGRDSQKKFMLEGNHLLIEALKAGIKLETIIYDRNAGIPEELQPYIPERGLERIAVSR 80
Query: 62 KNIQLWSDLVTP-PGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCA 118
+ + +D TP P + +L ++ P +V D ++DPGN+G+I+R
Sbjct: 81 EVLAKVADTKTPQPVMAAAHQLQVSSEVVLEDRERPYGMVVVVDGVQDPGNLGTIIRAAD 140
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ +G VD+Y+ K IRA
Sbjct: 141 AAGAGAVILGQGTVDLYNPKTIRAT 165
>gi|262172137|ref|ZP_06039815.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
gi|261893213|gb|EEY39199.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
Length = 244
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ + LK++ +F + + + + D +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELASSTLKVQNIFATAEFLAEHANVLADYECTEAALDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P+ + P + L I D + DPGN+G+I+R+ G +
Sbjct: 73 LTKVSTLVSNNAAIAVVEIPSIEV----PKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQ 128
Query: 124 QVVCSRGCVDIYDNKVIRA 142
++ S+ C D Y+ K I A
Sbjct: 129 HIIASQDCADPYNPKTISA 147
>gi|84496735|ref|ZP_00995589.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
gi|84383503|gb|EAP99384.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
Length = 264
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKL-KMVFFSQWDILKELPL-----PEDVPQH 57
+ R RE+ G +++G + + +A++ L ++ + I + L D+ H
Sbjct: 16 LSRRSARERTGRFVVDGPQGVREAIRYAAPLVDDIYVTAEAIERHQDLIAAAQDADIHLH 75
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
D + SD +P G++ + AH + + + L ++ N+RDPGN G+++R
Sbjct: 76 ETDDAVLAAMSDTESPQGVLAVVAAQAHTLEQVLATAPRLVVLLSNVRDPGNAGTVIRGA 135
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A GA V+ + G VD+ KV+R+
Sbjct: 136 DAFGADAVLVTDGSVDVLSPKVVRS 160
>gi|392965046|ref|ZP_10330466.1| tRNA/rRNA methyltransferase (SpoU) [Fibrisoma limi BUZ 3]
gi|387846429|emb|CCH52512.1| tRNA/rRNA methyltransferase (SpoU) [Fibrisoma limi BUZ 3]
Length = 284
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 24/152 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R++ G ++EG + + + L++ ++ ++ + E E+ H D +
Sbjct: 36 LHQKKYRQQHGAFLVEGAKSVQEVLQSTFQINLL------VATEAFYKENA--HLTDRQR 87
Query: 64 IQLWSDLVTPPGI--IGIFELPAHPIASI----------DPASLPLNIVCDNIRDPGNMG 111
I + ++ +P + IG E +A + DP + L + D+IRDPGN+G
Sbjct: 88 IPV--EIASPAELERIGTLESNNAALAVVSAMENRPLLADPGEMAL--ILDDIRDPGNLG 143
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+ILR+ G R+++CS D+Y++KVI A+
Sbjct: 144 TILRIADWYGVRKILCSDTTADVYNSKVISAS 175
>gi|314933335|ref|ZP_07840700.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
gi|313653485|gb|EFS17242.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
Length = 246
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 14 GWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTP 73
G ++EG ++ +A ++ +++ +F + D E L + ++ K + S VTP
Sbjct: 28 GLALIEGIHLIEEAYQSGIEITQLFVIEPDRTDEALLDYANEAYEINMKVAEALSGTVTP 87
Query: 74 PGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVD 133
G + E P + I+ + ++ D I+DPGN+G+++R A G +V +G D
Sbjct: 88 QGFFAVIEKPQYN--EIEALQV---LLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTAD 142
Query: 134 IYDNKVIRAA 143
Y +KV+RA+
Sbjct: 143 PYQDKVMRAS 152
>gi|13357887|ref|NP_078161.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|167971835|ref|ZP_02554112.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
gi|168282544|ref|ZP_02690211.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|168308698|ref|ZP_02691373.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|170762188|ref|YP_001752409.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|11357051|pir||C82904 rRNA methylase UU327 [imported] - Ureaplasma urealyticum
gi|6899305|gb|AAF30736.1|AE002130_3 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|168827765|gb|ACA33027.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|171902435|gb|EDT48724.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|182675668|gb|EDT87573.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701207|gb|EDU19489.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
Length = 257
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 78/143 (54%), Gaps = 12/143 (8%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKL------KMVFFSQWDILKELPLPEDVPQHRVD 60
+K RE ++EG ++L +AL+ + + V+ +++ + + L +++ ++V
Sbjct: 23 KKYREANKLFIIEGFKLLDEALQNQQTIVSIIINEHVYNKEFETIFKYTLYDNIQIYKVS 82
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
I+ S + P I+ + ++ + I+ L L DNI+DPGN+G+ILR C A
Sbjct: 83 GNIIKKLSVNIEPSPILAVVKIK-QEMCDINDNILLL----DNIQDPGNLGTILRTCFAF 137
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
+QV+ + CVD+Y+ K I+A+
Sbjct: 138 NIKQVIFN-NCVDLYNPKTIKAS 159
>gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase SpoU [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 283
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 23/159 (14%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLK--------------LKMVFFSQWDILKELPL 50
++ +QRE++ + EG + + +AL A + + V+ + + + + L
Sbjct: 23 RTFRQRERR--FLAEGPQAVREALAAAVDGAQGRSPHGGAASGVVEVYATAEAMQRHIDL 80
Query: 51 PE-----DVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIR 105
+ DVP HRV + + VTP G+I + E P+ + + L V ++R
Sbjct: 81 VDAARAVDVPTHRVSLDVMSELAQTVTPQGVIAVCEFVDVPLERV--GDVRLAAVLSHVR 138
Query: 106 DPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
DPGN G++LR A GA V+ + VD Y+ K +RA+A
Sbjct: 139 DPGNAGTVLRTADAAGADVVIFTDASVDPYNGKCVRASA 177
>gi|223043735|ref|ZP_03613778.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
gi|417907694|ref|ZP_12551465.1| RNA methyltransferase, TrmH family [Staphylococcus capitis VCU116]
gi|222442832|gb|EEE48934.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
gi|341595723|gb|EGS38366.1| RNA methyltransferase, TrmH family [Staphylococcus capitis VCU116]
Length = 246
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 14 GWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTP 73
G ++EG ++ +A ++ +++K +F + D E + + ++ K + S VTP
Sbjct: 28 GLALIEGIHLIEEAYQSGIEIKQLFVIEPDRTDEDLIDYANETYEINMKVAEALSGTVTP 87
Query: 74 PGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVD 133
G + E P + + ++ D I+DPGN+G+++R A G +V +G D
Sbjct: 88 QGFFAVIEKPHY-----NDTEAQQVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTAD 142
Query: 134 IYDNKVIRAA 143
Y +KV+RA+
Sbjct: 143 PYQDKVMRAS 152
>gi|390168487|ref|ZP_10220446.1| tRNA/rRNA methyltransferase SpoU [Sphingobium indicum B90A]
gi|389588906|gb|EIM66942.1| tRNA/rRNA methyltransferase SpoU [Sphingobium indicum B90A]
Length = 265
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF--SQWDILKELPLPEDVPQHRVDY 61
++ +K R+ +G + EG RIL +A + + +M+F S + EL + V
Sbjct: 19 LREKKFRKAEGLFLAEGLRILTEAREEGVLPEMLFHAGSTHPLAAELIAAMEAAGGDVIE 78
Query: 62 KNIQLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ S + P ++G++ P+A +D + IV ++RDPGN+G+ILR
Sbjct: 79 TTPDILSKISGKDNPQAVVGVYRDRLTPLAKLDRGKADIWIVAQSLRDPGNLGTILRTGD 138
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA ++ CVD + + +RA+
Sbjct: 139 AVGAGGLILIDDCVDPFSVESVRAS 163
>gi|445424964|ref|ZP_21437119.1| RNA methyltransferase, TrmH family [Acinetobacter sp. WC-743]
gi|444754076|gb|ELW78710.1| RNA methyltransferase, TrmH family [Acinetobacter sp. WC-743]
Length = 258
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 21/145 (14%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR--------VDY 61
R+K+G +LEG + + L+ K+ +F ++ + E L E + Q++ Y
Sbjct: 27 RKKQGQTVLEGTHLSLAWLEKGRKINSIFTTEHALAHE-DLGEIIDQYQGMVFVISEALY 85
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIA---SIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
K++ S L T + I +LP+ A S D ++ +N++DPGN+G++LR A
Sbjct: 86 KDL---STLGTTLACLAIVDLPSSTQALNFSED------TLILENVQDPGNVGTLLRSAA 136
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G Q+VC++G ++ +V+RA
Sbjct: 137 AAGIEQIVCTKGSASLWSPRVLRAG 161
>gi|399074532|ref|ZP_10751062.1| rRNA methylase [Caulobacter sp. AP07]
gi|398040327|gb|EJL33438.1| rRNA methylase [Caulobacter sp. AP07]
Length = 263
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--------- 57
RK+RE G + EG +I+I+A+ K++ + + P+ + Q
Sbjct: 23 RKEREDSGLFLAEGLKIVIEAIDCGHAPKILMYGP--DAADHPMLQKAAQACFKAGGEII 80
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V+ + ++ S P ++G+F P+++I P S P + +RDPGN+G+++R
Sbjct: 81 EVNREILEKVSRRDNPQAVVGVFRQVYTPLSAIVPESAPCWVAMQAVRDPGNLGTVIRTA 140
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A G V+ CVD Y + +RA
Sbjct: 141 DAAGCGGVILVGDCVDPYSVEGVRA 165
>gi|365122618|ref|ZP_09339519.1| hypothetical protein HMPREF1033_02865 [Tannerella sp.
6_1_58FAA_CT1]
gi|363642366|gb|EHL81724.1| hypothetical protein HMPREF1033_02865 [Tannerella sp.
6_1_58FAA_CT1]
Length = 249
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R + + EG +++ D +++ +V + W L+E P V +
Sbjct: 13 LEQKKARRETACFVAEGNKLVNDTIRSFDCRLLVATASW--LEEHPGLRAEEIIEVSSEE 70
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
I+ S TP +I ++ +P + I + + L+I D ++DPGNMG+I+R+ G
Sbjct: 71 IKKVSLQKTPQDVIAVYRIPDYSI-NFESLDGCLSIALDTVQDPGNMGTIIRLADWYGIE 129
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+ CS GC DIY+ K ++A
Sbjct: 130 NIFCSLGCADIYNPKTVQAT 149
>gi|424766335|ref|ZP_18193688.1| RNA methyltransferase, TrmH family [Enterococcus faecium TX1337RF]
gi|402411074|gb|EJV43454.1| RNA methyltransferase, TrmH family [Enterococcus faecium TX1337RF]
Length = 254
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 17 MLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQLWSDLVT 72
+LEG ++ +A ++ ++K +F +Q +KE L +++ V + + SDL T
Sbjct: 31 LLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAANKEISTFLVSDEVMDAVSDLPT 89
Query: 73 PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCV 132
P GI+ + L A L L DN++DPGN+G+++R A V+ S+G
Sbjct: 90 PQGILAVMALTAEGTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFDMAGVLLSKGTA 145
Query: 133 DIYDNKVIRA 142
DIY KV+R+
Sbjct: 146 DIYSTKVLRS 155
>gi|325662834|ref|ZP_08151403.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
gi|325470886|gb|EGC74115.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
Length = 262
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN- 63
K K R ++G ++EG ++ + + L V + D KE + + +++Y +
Sbjct: 18 KKSKVRNEQGVFLVEGVKMYQEIPQEQLVKVYVSETFADKQKE-EINRLKDRRKLEYLSD 76
Query: 64 --IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
Q SD TP GI+ + A+ + I A +V DN++DPGN+G+ILR G
Sbjct: 77 HVFQYVSDTKTPQGILCVVRQSAYCLEDILEAEDAHLLVLDNLQDPGNLGTILRTAEGAG 136
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++ S+ VDIY+ KVIR+
Sbjct: 137 VTGIIISKESVDIYNPKVIRST 158
>gi|229829645|ref|ZP_04455714.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
14600]
gi|229791634|gb|EEP27748.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
14600]
Length = 278
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ SD VTP GI+ + PA+ + L ++ +NI+DPGN+G+I R GA
Sbjct: 96 MEYMSDTVTPQGILAVVRQPAYQWEELLGGHKTLLMILENIQDPGNLGTIFRTAEGAGAT 155
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++ SR VD++ KVIR+
Sbjct: 156 GILMSRDTVDLFSPKVIRST 175
>gi|409435809|ref|ZP_11263017.1| rRNA methylase protein [Rhizobium mesoamericanum STM3625]
gi|408752567|emb|CCM74164.1| rRNA methylase protein [Rhizobium mesoamericanum STM3625]
Length = 286
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K RE+ G M EG +++IDA++ ++ + +++ K PL E + +
Sbjct: 33 LSDKKTREQSGTFMAEGLKLVIDAIELGWMIRTLVYAK--AAKGKPLVEQMAAKTIASGG 90
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIFE P+ I P I D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVLSSVTRRDNPQMVVGIFESRWKPLRDIHPKPGETWIALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A GA V+ D + + +RA
Sbjct: 151 RTADAAGASGVILVGETTDPFSLETVRAT 179
>gi|383781352|ref|YP_005465919.1| putative rRNA methylase [Actinoplanes missouriensis 431]
gi|381374585|dbj|BAL91403.1| putative rRNA methylase [Actinoplanes missouriensis 431]
Length = 257
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKM----VFFSQWDILKELPLPEDVPQHRV 59
++ RK R++ G + EG + + +AL A L++ +++ L + L E P V
Sbjct: 15 LQRRKDRDQSGRFLAEGPQAVREALAAGAVLELFGTAAGLTRYADLAAMAL-EVSP---V 70
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ + ++ V P G++ + E PIA+ L V IRDPGN G++LR A
Sbjct: 71 TDEALAALTETVHPQGLVAVCEQNDVPIAAALAKQPRLVAVVAEIRDPGNAGTVLRTADA 130
Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
GA V+ + VD Y+ K +RA+A
Sbjct: 131 AGASAVIFAGDAVDPYNGKCVRASA 155
>gi|148973891|ref|ZP_01811424.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
SWAT-3]
gi|145965588|gb|EDK30836.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
SWAT-3]
Length = 244
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE--LPLPE-DVPQHRVD 60
+ +KQR+ G +++G++ +++ ++L +K VF + D L E L E D + +D
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELFNSDLVVKNVF-ATADFLSENHASLIEFDCVEASLD 71
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ S LV+ I + E+P + P + L I D + DPGN+G+I+RV
Sbjct: 72 --DLTKASTLVSNNAAIAVVEIPKVEL----PEAKGLMIALDGVSDPGNLGTIIRVADWY 125
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + +V S C D Y+ K I A
Sbjct: 126 GIKHIVASSDCADPYNPKTISAT 148
>gi|448238995|ref|YP_007403053.1| tRNA/rRNA methyltransferase domain protein [Geobacillus sp. GHH01]
gi|445207837|gb|AGE23302.1| tRNA/rRNA methyltransferase domain protein [Geobacillus sp. GHH01]
Length = 250
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 22/146 (15%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHR 58
++K R++ G +LEG ++ +A+K+N L + + WD+ VP
Sbjct: 20 TKKGRDETGLFLLEGFHLVEEAVKSNAPLVELMVDERTAIPPGWDV--------SVPVVI 71
Query: 59 VDYKNIQLWSDLVTPPGIIGIF-ELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V ++ S TP GI + +LPA + + A ++ D ++DPGN+G+++R
Sbjct: 72 VTEAVMKAISSTETPQGIAAVCRKLPAE-LEGVKTA-----LLIDAVQDPGNLGTMIRTA 125
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G V+ GC D+Y+ KV+RA
Sbjct: 126 DAAGIDAVILGEGCADVYNPKVVRAT 151
>gi|358012254|ref|ZP_09144064.1| tRNA/rRNA methyltransferase [Acinetobacter sp. P8-3-8]
Length = 258
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 21/145 (14%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVD--------Y 61
R+K+G +LEG + + L+ K+ +F ++ + E L E + Q++ Y
Sbjct: 27 RKKQGQTVLEGTHLSLAWLEKGRKINSIFTTEHALDHE-DLGEIIDQYQGAVFVISESLY 85
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN---IVCDNIRDPGNMGSILRVCA 118
K++ S L T + I +LP+ A L N ++ +N++DPGN+G++LR A
Sbjct: 86 KDL---STLGTTLACLAIVDLPSSTQA------LNFNEDTLILENVQDPGNVGTLLRSAA 136
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G QVVC++G ++ +V+RA
Sbjct: 137 AAGIEQVVCTKGSASLWSPRVLRAG 161
>gi|328545333|ref|YP_004305442.1| TrmH family RNA methyltransferase [Polymorphum gilvum SL003B-26A1]
gi|326415075|gb|ADZ72138.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
Length = 279
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 23/151 (15%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
RK R + G + EG ++ DAL A ++ + P D P + + +
Sbjct: 34 RKHRSQSGLFVAEGLKLATDALAAGWSVRYLALG--------PEARDNPVAQRAAASAKA 85
Query: 67 WSDLV---------------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMG 111
L+ P ++G++E P+ +IDPA + I D +RDPGN+G
Sbjct: 86 RGALILEVNTGVLAAITRRDNPQMVVGVYEQQLTPVDAIDPARATVWIALDRVRDPGNLG 145
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+I+R AVGA V+ C D + + +RA
Sbjct: 146 TIIRTADAVGASGVMLVGDCTDPFAVEAVRA 176
>gi|395791664|ref|ZP_10471120.1| hypothetical protein MEC_01111 [Bartonella alsatica IBS 382]
gi|395407967|gb|EJF74587.1| hypothetical protein MEC_01111 [Bartonella alsatica IBS 382]
Length = 280
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
+ +K R ++G + EG +++IDA ++ + FS+ I E V
Sbjct: 26 LSQKKNRNREGLFIAEGLKLVIDAFNLGWTIQTLIFSKSKIGNAAIEKTAARTVANGGFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K Q + +T P IIGIF+ PI I + + D +RDPGN+G+I+R
Sbjct: 86 IKASQKVLESITRRDNPQTIIGIFKQKWQPIEMIKGQVEDVYVALDRVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 146 VDAVGAKGVILIGETTDPFSPETVRAT 172
>gi|331086557|ref|ZP_08335635.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330410390|gb|EGG89822.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 262
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN- 63
K K R ++G ++EG ++ + + L V + D KE + + +++Y +
Sbjct: 18 KKSKVRNEQGVFLVEGVKMYQEIPQEQLVKVYVSETFADKQKE-EINRLKDRRKLEYLSD 76
Query: 64 --IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
Q SD TP GI+ + A+ + I A +V DN++DPGN+G+ILR G
Sbjct: 77 HVFQYVSDTKTPQGILCVVRQSAYCLEDILEAEDAHLLVLDNLQDPGNLGTILRTAEGAG 136
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++ S+ VDIY+ KVIR+
Sbjct: 137 VTGIIISKESVDIYNPKVIRST 158
>gi|281424397|ref|ZP_06255310.1| RNA methyltransferase, TrmH family [Prevotella oris F0302]
gi|281401666|gb|EFB32497.1| RNA methyltransferase, TrmH family [Prevotella oris F0302]
Length = 250
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K RE+ + EG +++ + L + +V +W P ++V + V
Sbjct: 13 LQLKKNREQTRLFIAEGHKLVEELLAMSRAHTLVATQEWLDSHSAPPADEVIE--VTSDE 70
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L P ++G+F A +I+ ++L L + D I+DPGN+G+I+R+ G
Sbjct: 71 LRKVSLLQHPQQVLGLFPFFASDTHAINTSTLSL--MLDGIQDPGNLGTIIRIADWFGIN 128
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
+ CS+ D+Y+ KVI+A
Sbjct: 129 DIYCSQETADMYNPKVIQAT 148
>gi|126698277|ref|YP_001087174.1| tRNA/rRNA methyltransferase SpoU [Clostridium difficile 630]
gi|115249714|emb|CAJ67531.1| putative tRNA/rRNA methyltransferase, SpoU [Clostridium difficile
630]
Length = 226
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 27 ALKANLKLKMVFFSQ-WDILKE-LPLPEDVPQ-----HRVDYKNIQLWSDLVTPPGIIGI 79
AL+ L VF ++ ++ KE + L ED+ + ++ KN + D GIIG+
Sbjct: 3 ALECMANLDYVFINEEFENKKEHVKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGIIGV 62
Query: 80 FELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKV 139
++ ++ D I+DPGNMG+I+R + G ++ +GCVDIY+ KV
Sbjct: 63 VSFKKKKLSESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKV 122
Query: 140 IRAA 143
IR+
Sbjct: 123 IRST 126
>gi|402830234|ref|ZP_10878938.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. CM59]
gi|402286055|gb|EJU34534.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. CM59]
Length = 250
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R + G ++EGK+ +++ ++A K ++++ + P P V + +Q
Sbjct: 16 KKYRSETGLFVVEGKKGILEFVQAGYKAEVIYATHTFS----PALSKQPLTLVSPEELQR 71
Query: 67 WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
S L P + IF P I L L + DNI+DPGN+G+++R+C G ++
Sbjct: 72 LSALKHPDEGVAIFHQPKRK--GILQEGLILAL--DNIQDPGNLGTLIRLCDWFGIETLL 127
Query: 127 CSRGCVDIYDNKVIRAA 143
CS VD Y+ KV++A+
Sbjct: 128 CSEQTVDCYNPKVVQAS 144
>gi|402490582|ref|ZP_10837371.1| tRNA/rRNA methyltransferase SpoU [Rhizobium sp. CCGE 510]
gi|401810608|gb|EJT02981.1| tRNA/rRNA methyltransferase SpoU [Rhizobium sp. CCGE 510]
Length = 286
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ ++K RE+ G + EG +++IDA++ ++ + +++ K PL E +
Sbjct: 33 LTNKKSREESGTFLAEGLKLVIDAIELGWTIRTLVYAK--AAKSKPLVEQMAARTVASGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIFE P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIASITRRDNPQMVVGIFEQRWKPLRDIRPRDGETWVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA ++ D + + +RA
Sbjct: 151 RTADAAGASGIILIGETTDPFSLETVRA 178
>gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
17678]
gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
17678]
Length = 256
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 16/145 (11%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFF---SQWDI-LKEL---PLPEDVPQHR 58
+ K+R K+ + EG R + AL+ + MV S++D+ LK+L L +D+
Sbjct: 20 ASKKRYKEKKYLAEGLRTVELALEHGADIDMVILREGSEFDLDLKDLRVHTLSKDLYDQV 79
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
D +N Q GI+ + ++ DP+ +V D ++DPGN+G+I+R
Sbjct: 80 SDTENSQ---------GIMVVVKMRDLSKEDFDPSRHRKVLVLDRLQDPGNVGTIIRTAD 130
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A+G + ++GCVD+Y+ KV+R+A
Sbjct: 131 AMGFDLICMAKGCVDVYNPKVVRSA 155
>gi|91225285|ref|ZP_01260453.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
12G01]
gi|269968767|ref|ZP_06182757.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|91189924|gb|EAS76196.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
12G01]
gi|269826612|gb|EEZ80956.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 244
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ ++LK+K VF + + +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELASSSLKVKQVFATAAFLEQNAGTLNRFDCVEASLDE 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P+ +P + L I D + DPGN+G+I+RV G +
Sbjct: 73 LTKASTLVSNNAAIAVVEIPSVK----EPQAKGLMIALDGVSDPGNLGTIIRVADWYGIK 128
Query: 124 QVVCSRGCVDIYDNKVIRA 142
++ S C D Y+ K I A
Sbjct: 129 HIIASTDCADPYNPKTISA 147
>gi|305664506|ref|YP_003860793.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
gi|88708523|gb|EAR00759.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
Length = 240
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK-ELPLPEDVPQHRVDYK 62
++ +K R + +EG + + + L +N++ V+ +++ E L E + D+K
Sbjct: 13 LQQKKYRNQHRMFAVEGIKSVKELLNSNIEAHKVYCVNPSLIENESGLVELISAG--DFK 70
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
I S L P G++G+F +P + + L L D++RDPGN+G+I+R+C G
Sbjct: 71 KI---STLKNPNGVLGVFIIPKPKVVDQNDWLLAL----DDVRDPGNLGTIIRLCDWFGI 123
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ ++CS VD ++ KV++A+
Sbjct: 124 KNLLCSENTVDCFNPKVLQAS 144
>gi|433461382|ref|ZP_20418992.1| RNA methyltransferase [Halobacillus sp. BAB-2008]
gi|432190209|gb|ELK47252.1| RNA methyltransferase [Halobacillus sp. BAB-2008]
Length = 244
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 22/147 (14%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK-------ELPLPEDVPQ 56
+ RK R++ G ++EG ++ + V S W +L+ + P ++
Sbjct: 16 LHKRKYRKQTGQFLVEGHHLV----------EEVLASDWTVLELIRREGTDFTAPPEIKV 65
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
VD + ++ TP GI + E + PA L I D ++DPGN+G+++R
Sbjct: 66 TEVDAQVFAAVAETETPQGIAAVVEQKTYEFL---PAKRTLMI--DAVQDPGNIGTLIRT 120
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
A G QV+ G VD +++KVIRA
Sbjct: 121 ADAAGFDQVLLGTGSVDPFNDKVIRAT 147
>gi|421588164|ref|ZP_16033483.1| tRNA/rRNA methyltransferase SpoU [Rhizobium sp. Pop5]
gi|403707198|gb|EJZ22263.1| tRNA/rRNA methyltransferase SpoU [Rhizobium sp. Pop5]
Length = 286
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K RE+ G + EG +++IDA++ ++ + +++ K PL E + V
Sbjct: 33 LTNKKSREESGTFLAEGLKLVIDAIELGWTIRTLVYAK--AAKGKPLVEQMAAKTVAAGG 90
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIFE P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIGSITRRDNPQMVVGIFEQRWKPLRDIRPRDGETWVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ D + + +RA
Sbjct: 151 RTADAAGASGVILVGEATDPFSLETVRA 178
>gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162]
Length = 258
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLW 67
K R ++G + EG+++ ++A ++ V S D + + V+ +
Sbjct: 21 KARREQGLFIAEGRKMFLEAPDDWIEKVYVAESLLDDEEIMQKAGRFSWDAVENSVFRQM 80
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD TP G++ + P++ + + PL +V ++++DPGN G+I+R G V
Sbjct: 81 SDTQTPQGVLTVLRQPSYQLEDLLKQEAPLLMVLEDLQDPGNAGTIIRTGEGAGIGGVFL 140
Query: 128 SRGCVDIYDNKVIRAA 143
++ CVDI + KVIRA
Sbjct: 141 TKTCVDITNPKVIRAT 156
>gi|343511287|ref|ZP_08748461.1| tRNA/rRNA methyltransferase [Vibrio scophthalmi LMG 19158]
gi|343516473|ref|ZP_08753508.1| tRNA/rRNA methyltransferase [Vibrio sp. N418]
gi|342796058|gb|EGU31753.1| tRNA/rRNA methyltransferase [Vibrio sp. N418]
gi|342798620|gb|EGU34219.1| tRNA/rRNA methyltransferase [Vibrio scophthalmi LMG 19158]
Length = 244
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ + L +K VF + + + E +
Sbjct: 13 LGQKKQRKALGLFLVQGEKNVLELASSTLTVKHVFATADFLEQNQATLERFECIEASLDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P P + + I D ++DPGN+G+I+RV G +
Sbjct: 73 LTKASTLVSNNAAIAVVEIPTFEA----PVAQGMMIALDGVQDPGNLGTIIRVADWYGIK 128
Query: 124 QVVCSRGCVDIYDNKVIRA 142
+V S+ C D Y+ K I A
Sbjct: 129 HIVASQDCADPYNPKTISA 147
>gi|312882046|ref|ZP_07741800.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370341|gb|EFP97839.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 244
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR G +++G++ +++ +K + +++ VF +Q D L + Q + Y+
Sbjct: 13 LGQKKQRRAHGLFLVQGEKNVLELVKTDYRVQQVFATQ-DFL------DRYSQCLIGYEC 65
Query: 64 IQLW-------SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
I+ S LV+ I I E+P I+P + I D + DPGN+G+I+R+
Sbjct: 66 IEATLEDLTKASTLVSNNAAIAIVEIPQ----LIEPEAEGFMIALDGVSDPGNLGTIIRL 121
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
G + +V S C D Y K I A
Sbjct: 122 ADWYGIKHIVASEDCADPYSPKTISAT 148
>gi|433448891|ref|ZP_20411756.1| rRNA methylase [Weissella ceti NC36]
gi|429539280|gb|ELA07317.1| rRNA methylase [Weissella ceti NC36]
Length = 256
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
++++K R+ +L+G ++ +A++ N +L+ + + + +P VP +
Sbjct: 18 LQTKKGRQTTQTYLLDGWHLVQEAIENNGRLRALIGTAEQLSAHADDIPHGVPVFEITAD 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ SDLVTP GI LP ++ +P + + D I+DPGN+G+++R A
Sbjct: 78 IAKKLSDLVTPQGIFAEVSLP---TSNREPQYIHEGAWLFLDGIQDPGNVGTMVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G VV G VD Y K +RA
Sbjct: 135 GFTGVVFGEGSVDPYSPKAVRA 156
>gi|365851695|ref|ZP_09392118.1| RNA methyltransferase, TrmH family [Lactobacillus parafarraginis
F0439]
gi|363716208|gb|EHL99619.1| RNA methyltransferase, TrmH family [Lactobacillus parafarraginis
F0439]
Length = 255
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ-HRVDYK 62
M+++K R K G ++EG I+ +A++ + L V + + L EL + + + + +
Sbjct: 18 MQTKKGRIKAGKYVIEGWHIVDEAIRHDKSLDAVMVTDANYLDELNIDSTTTETYLITPE 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN-IVCDNIRDPGNMGSILRVCAAVG 121
+ S TP G+ + + + SI P L + ++ DNI+DPGN+G+++R A G
Sbjct: 78 VAKHISATETPQGVFAVLKTDDYH-ESI-PEKLGGSWLLLDNIQDPGNIGTMVRTADAAG 135
Query: 122 ARQVVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 136 MNGVIFGKGSADIYNPKVVRS 156
>gi|392422132|ref|YP_006458736.1| rRNA methylase [Pseudomonas stutzeri CCUG 29243]
gi|390984320|gb|AFM34313.1| rRNA methylase [Pseudomonas stutzeri CCUG 29243]
Length = 243
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-VPQHRVDYK 62
+ +K R + G ++EG+ ++++ KA L ++ S+ + + H + +
Sbjct: 9 LHQKKYRTEFGHFLVEGEHLVLELQKAGLHNPLLQRSELYVTSAYEHWQSPFKTHLISDR 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ +D TP GI+ + +PA P + I I+DPGN+G+ILR A G
Sbjct: 69 QMSQIADTKTPQGIVALVPMPATGAPVAAPLAGERAIYLHEIQDPGNLGTILRTLAWFGN 128
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ + S G VD Y+ KV+R++
Sbjct: 129 FRCLLSPGSVDPYNPKVVRSS 149
>gi|374709113|ref|ZP_09713547.1| 23S rRNA methyltransferase [Sporolactobacillus inulinus CASD]
Length = 255
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDA-LKANLKLKMVFFSQWDILKELPLPEDVPQ-----H 57
+K+RK RE++ ++EG ++ +A A + + + LP+D P
Sbjct: 18 LKTRKWREREQMYLIEGPHLVQEAVFSAKEHVHAILIDE-----AFHLPDDWPLDSIEVF 72
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+V +K S TP GII + +L + + ++ P ++ D ++DPGN+G+++R
Sbjct: 73 QVTHKIFTELSQTETPQGIIAVCDLKSLSL-TLKPGRF---LLVDGVQDPGNLGTLIRTA 128
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G + GCVD Y+ K +R+A
Sbjct: 129 DAFGLNAIYLGDGCVDGYNAKTLRSA 154
>gi|343508046|ref|ZP_08745408.1| tRNA/rRNA methyltransferase [Vibrio ichthyoenteri ATCC 700023]
gi|342795390|gb|EGU31121.1| tRNA/rRNA methyltransferase [Vibrio ichthyoenteri ATCC 700023]
Length = 244
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ + L +K VF + + + E +
Sbjct: 13 LGQKKQRKALGLFLVQGEKNVLELASSTLTVKHVFATADFLEQNQTTLERFECIEASLDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P P + + I D ++DPGN+G+I+RV G +
Sbjct: 73 LTKASTLVSNNAAIAVVEIPTFAA----PQAQGMMIALDGVQDPGNLGTIIRVADWYGIK 128
Query: 124 QVVCSRGCVDIYDNKVIRA 142
+V S+ C D Y+ K I A
Sbjct: 129 HIVASQDCADPYNPKTISA 147
>gi|254420044|ref|ZP_05033768.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
gi|196186221|gb|EDX81197.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
Length = 272
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR-------- 58
RK+R+ G + EG + + +AL +M+ + + PL +
Sbjct: 30 RKERDLTGAFLAEGLKFIGEALDLGRAPRMLLVGEE--ARPHPLLDRAKAETRKAGGDII 87
Query: 59 -VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V + ++ S P ++G+F+ P+ S+DP S P + + +RDPGN+G+I+R
Sbjct: 88 IVTHAILEKISRRDNPQTVLGVFDQAYAPLDSLDPTSAPCWVALEQVRDPGNLGTIIRTA 147
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A G V+ CVD Y + +RA
Sbjct: 148 DAAGCGGVILIGDCVDPYSVEAVRA 172
>gi|157273421|gb|ABV27320.1| TsnR [Candidatus Chloracidobacterium thermophilum]
Length = 282
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 77/151 (50%), Gaps = 12/151 (7%)
Query: 3 YMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDV-------- 54
++ +R+ R + + +EG R++ +AL++ + + V ++ L E P +
Sbjct: 17 FLAAREGRHRH-VIFIEGVRLVEEALRSKIVFEAVAYTPR--LYETPRGAQLLAALQSQP 73
Query: 55 -PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
R+ + SD+ T PG+I + + P+ + + PL ++ D I+ PGN+G++
Sbjct: 74 CRGARLTEALMAYISDVETAPGVIVLGQRPSSTLPDLTHHPAPLFVLADGIQSPGNLGAL 133
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
+R A GA ++ + G VD + K +RAAA
Sbjct: 134 IRTAEAAGATGILVTVGTVDPFQPKALRAAA 164
>gi|257090594|ref|ZP_05584955.1| predicted protein [Enterococcus faecalis CH188]
gi|312905124|ref|ZP_07764245.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0635]
gi|422687897|ref|ZP_16746068.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0630]
gi|422736796|ref|ZP_16793058.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1341]
gi|256999406|gb|EEU85926.1| predicted protein [Enterococcus faecalis CH188]
gi|310631514|gb|EFQ14797.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0635]
gi|315166404|gb|EFU10421.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1341]
gi|315579047|gb|EFU91238.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0630]
Length = 258
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLIEEAVKANADVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10]
gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10]
Length = 266
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-QWDILKELPLPEDVPQHR---- 58
++ +K R+K+ ++EG ++ +AL + ++ V + I +EL D Q
Sbjct: 17 LQEKKHRDKQNKYVVEGIHLVQEALSSGADIECVAYDVDKGIPQELRHITDTGQGAEWIG 76
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V + I SD +P + + A + + +V D ++DPGN+G+I+R
Sbjct: 77 VSHAVISKVSDTPSPQQVFAVIRKEARQWQDLILRENGMVVVLDGLQDPGNVGTIIRSAD 136
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA VV RGC D+Y+ K +R+
Sbjct: 137 AVGAAGVVLGRGCADLYNPKTLRST 161
>gi|29346221|ref|NP_809724.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
gi|298385600|ref|ZP_06995158.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
gi|29338116|gb|AAO75918.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
VPI-5482]
gi|298261741|gb|EFI04607.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
Length = 252
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+++ + EG ++ D L + S W L+ P + V +
Sbjct: 13 LELKKTRKEEQVFLAEGPKLTGDLLGHFPCRFLAATSSW--LQAHPDIQANEIAEVSQEE 70
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S L TP ++ +FE P + + S D A L + D+I+DPGN+G+I+R+ G
Sbjct: 71 LSRASLLKTPQQVLAVFEQPQYTL-SPDFARQSLCLALDDIQDPGNLGTIIRLADWFGIE 129
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++CS+ VD+Y+ K I+A
Sbjct: 130 HIICSQNTVDVYNPKTIQAT 149
>gi|375009820|ref|YP_004983453.1| RNA methyltransferase TrmH [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359288669|gb|AEV20353.1| RNA methyltransferase, TrmH [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 251
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHR 58
++K R++ G +LEG ++ +A+K+N L + + W++ VP
Sbjct: 20 TKKGRDETGLFLLEGFHLVEEAIKSNAPLVELIVDERTAVPPGWNV-------TGVPVTI 72
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V ++ S TP GI + + + + A ++ D ++DPGN+G+++R
Sbjct: 73 VTEAVMRAISSTETPQGIAAVCRQLSTELEGVKTA-----LLIDAVQDPGNLGTMIRTAD 127
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G V+ GC D+Y+ KV+RA
Sbjct: 128 AAGIDAVILGEGCADVYNPKVVRAT 152
>gi|424675680|ref|ZP_18112577.1| RNA methyltransferase, TrmH family [Enterococcus faecalis 599]
gi|402350316|gb|EJU85220.1| RNA methyltransferase, TrmH family [Enterococcus faecalis 599]
Length = 257
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|399888250|ref|ZP_10774127.1| RNA methyltransferase [Clostridium arbusti SL206]
Length = 261
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 10/146 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW--DILKELPLPEDVPQH---- 57
++ +K R ++EG R + +AL + + V S+ + ++L L E +
Sbjct: 19 LQEKKYRNLYNKFIVEGFRFVSEALDSKFNVCYVIISETIEEKFEKLGLNEKIKDGTKLI 78
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+V +++ P GI+ + ++ +ID I+ D ++DPGNMG+I+R
Sbjct: 79 KVSEAILKIICSTDNPQGIVAVV---SNEQITIDYNE-GFYILADKVQDPGNMGTIIRTA 134
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA+ ++ ++G VDIY++K +R+
Sbjct: 135 NAAGAKGIIVTKGTVDIYNDKTLRST 160
>gi|227519879|ref|ZP_03949928.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|424676236|ref|ZP_18113113.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV103]
gi|424680588|ref|ZP_18117391.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV116]
gi|424683121|ref|ZP_18119875.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV129]
gi|424686673|ref|ZP_18123339.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV25]
gi|424689562|ref|ZP_18126133.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV31]
gi|424694078|ref|ZP_18130487.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV37]
gi|424697657|ref|ZP_18133979.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV41]
gi|424700154|ref|ZP_18136352.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV62]
gi|424703004|ref|ZP_18139141.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV63]
gi|424710169|ref|ZP_18143635.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV65]
gi|424717872|ref|ZP_18147146.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV68]
gi|424721096|ref|ZP_18150194.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV72]
gi|424725047|ref|ZP_18153974.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV73]
gi|424727283|ref|ZP_18155916.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV81]
gi|424742071|ref|ZP_18170405.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV85]
gi|424751203|ref|ZP_18179235.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV93]
gi|227072673|gb|EEI10636.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|402353886|gb|EJU88708.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV116]
gi|402357495|gb|EJU92202.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV103]
gi|402365887|gb|EJV00301.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV129]
gi|402367068|gb|EJV01419.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV25]
gi|402367647|gb|EJV01986.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV31]
gi|402371860|gb|EJV06004.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV37]
gi|402374530|gb|EJV08546.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV62]
gi|402375188|gb|EJV09180.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV41]
gi|402383612|gb|EJV17207.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV68]
gi|402383881|gb|EJV17460.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV65]
gi|402385659|gb|EJV19191.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV63]
gi|402392292|gb|EJV25556.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV72]
gi|402392440|gb|EJV25701.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV73]
gi|402397273|gb|EJV30301.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV81]
gi|402401059|gb|EJV33859.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV85]
gi|402405757|gb|EJV38341.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ERV93]
Length = 258
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
gi|336421296|ref|ZP_08601455.1| hypothetical protein HMPREF0993_00832 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167663817|gb|EDS07947.1| putative RNA methyltransferase, TrmH family, group 3 [Clostridium
scindens ATCC 35704]
gi|336001482|gb|EGN31619.1| hypothetical protein HMPREF0993_00832 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 263
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
+ RK R+++G ++EG R+ + K + LK V+ S+ KE + ++ + Y I
Sbjct: 18 RKRKLRDEEGVFLVEGIRMFRETPK--MLLKEVYASESFYKKERRMTDEALKGSGAYLEI 75
Query: 65 ------QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
SD TP GI+ + + + + IV + ++DPGN+G+ILR
Sbjct: 76 LSDTVFGYVSDTKTPQGILCVVKQLDYRLEEAAAGRAAHLIVLNRLQDPGNLGTILRTAE 135
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
G ++ + CVDIY+ K IR+
Sbjct: 136 GAGVTGILLDQECVDIYNPKTIRST 160
>gi|405377538|ref|ZP_11031479.1| rRNA methylase [Rhizobium sp. CF142]
gi|397325975|gb|EJJ30299.1| rRNA methylase [Rhizobium sp. CF142]
Length = 285
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ ++K RE+ G M EG +++IDA++ ++ + +++ K PL E +
Sbjct: 32 LTNKKSREESGTFMAEGLKLVIDAIELGWTIRTLVYAK--AAKGKPLVEQMAAKTVASGG 89
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V+ K I + P ++GIFE + I P + D +RDPGN+G+I+
Sbjct: 90 LVLEVNEKVISSITRRDNPQMVVGIFETRWTKLRDIRPKDGETWVALDRVRDPGNLGTII 149
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ D + + +RA
Sbjct: 150 RTADAAGASGVILIGETTDPFSLETVRA 177
>gi|15827732|ref|NP_301995.1| rRNA methyltransferase [Mycobacterium leprae TN]
gi|221230209|ref|YP_002503625.1| rRNA methyltransferase [Mycobacterium leprae Br4923]
gi|13093283|emb|CAC31778.1| putative rRNA methyltransferase [Mycobacterium leprae]
gi|219933316|emb|CAR71492.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
Length = 259
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
P H V + + SD VTP G+I + E+P +A++ S L + I +PGN G+++
Sbjct: 67 PVHPVSERAAKALSDTVTPTGLIAVCEMPTTRLATVLAGSPQLVVAAVEISEPGNAGTVI 126
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
R+ A+GA V+ VD Y+ K +R++A
Sbjct: 127 RIADAMGAAAVIFGGYTVDPYNGKCLRSSA 156
>gi|312899832|ref|ZP_07759151.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0470]
gi|422701360|ref|ZP_16759201.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1342]
gi|311293082|gb|EFQ71638.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0470]
gi|315170301|gb|EFU14318.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1342]
Length = 258
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|256617041|ref|ZP_05473887.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
gi|307277164|ref|ZP_07558268.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX2134]
gi|421513054|ref|ZP_15959842.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ATCC
29212]
gi|256596568|gb|EEU15744.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
gi|295113457|emb|CBL32094.1| rRNA methylases [Enterococcus sp. 7L76]
gi|306506094|gb|EFM75260.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX2134]
gi|401673883|gb|EJS80253.1| RNA methyltransferase, TrmH family [Enterococcus faecalis ATCC
29212]
Length = 258
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|29376897|ref|NP_816051.1| RNA methyltransferase [Enterococcus faecalis V583]
gi|227553934|ref|ZP_03983981.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|229545177|ref|ZP_04433902.1| RNA methyltransferase [Enterococcus faecalis TX1322]
gi|229549425|ref|ZP_04438150.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|255972129|ref|ZP_05422715.1| predicted protein [Enterococcus faecalis T1]
gi|256763096|ref|ZP_05503676.1| rRNA methylase [Enterococcus faecalis T3]
gi|256853763|ref|ZP_05559128.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256961303|ref|ZP_05565474.1| rRNA methylase [Enterococcus faecalis Merz96]
gi|256963570|ref|ZP_05567741.1| rRNA methylase [Enterococcus faecalis HIP11704]
gi|257079635|ref|ZP_05573996.1| rRNA methylase [Enterococcus faecalis JH1]
gi|257082019|ref|ZP_05576380.1| rRNA methylase [Enterococcus faecalis E1Sol]
gi|257084570|ref|ZP_05578931.1| rRNA methylase [Enterococcus faecalis Fly1]
gi|293383588|ref|ZP_06629498.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
gi|293387299|ref|ZP_06631856.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
gi|294780915|ref|ZP_06746269.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
gi|307270842|ref|ZP_07552129.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX4248]
gi|307271508|ref|ZP_07552780.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0855]
gi|307287718|ref|ZP_07567761.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0109]
gi|312906138|ref|ZP_07765150.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis DAPTO 512]
gi|312909483|ref|ZP_07768338.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis DAPTO 516]
gi|312953482|ref|ZP_07772322.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0102]
gi|384513799|ref|YP_005708892.1| TrmH family RNA methyltransferase [Enterococcus faecalis OG1RF]
gi|384519259|ref|YP_005706564.1| SpoU type rRNA methylase [Enterococcus faecalis 62]
gi|397700592|ref|YP_006538380.1| SpoU type rRNA methylase [Enterococcus faecalis D32]
gi|422685114|ref|ZP_16743339.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX4000]
gi|422693239|ref|ZP_16751253.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0031]
gi|422703696|ref|ZP_16761516.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1302]
gi|422714946|ref|ZP_16771670.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0309A]
gi|422717376|ref|ZP_16774061.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0309B]
gi|422725968|ref|ZP_16782425.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0312]
gi|422732319|ref|ZP_16788659.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0645]
gi|422739378|ref|ZP_16794559.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX2141]
gi|422869073|ref|ZP_16915595.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TX1467]
gi|424760593|ref|ZP_18188205.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R508]
gi|428767610|ref|YP_007153721.1| RNA methyltransferase, TrmH family [Enterococcus faecalis str.
Symbioflor 1]
gi|430359658|ref|ZP_19425910.1| rRNA methylase [Enterococcus faecalis OG1X]
gi|430370079|ref|ZP_19428878.1| rRNA methylase [Enterococcus faecalis M7]
gi|29344362|gb|AAO82121.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
gi|227176920|gb|EEI57892.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|229305662|gb|EEN71658.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|229309722|gb|EEN75709.1| RNA methyltransferase [Enterococcus faecalis TX1322]
gi|255963147|gb|EET95623.1| predicted protein [Enterococcus faecalis T1]
gi|256684347|gb|EEU24042.1| rRNA methylase [Enterococcus faecalis T3]
gi|256710706|gb|EEU25749.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256951799|gb|EEU68431.1| rRNA methylase [Enterococcus faecalis Merz96]
gi|256954066|gb|EEU70698.1| rRNA methylase [Enterococcus faecalis HIP11704]
gi|256987665|gb|EEU74967.1| rRNA methylase [Enterococcus faecalis JH1]
gi|256990049|gb|EEU77351.1| rRNA methylase [Enterococcus faecalis E1Sol]
gi|256992600|gb|EEU79902.1| rRNA methylase [Enterococcus faecalis Fly1]
gi|291079100|gb|EFE16464.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
gi|291083336|gb|EFE20299.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
gi|294452041|gb|EFG20489.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
gi|306501456|gb|EFM70759.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0109]
gi|306511780|gb|EFM80778.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0855]
gi|306512755|gb|EFM81400.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX4248]
gi|310627784|gb|EFQ11067.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis DAPTO 512]
gi|310628691|gb|EFQ11974.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0102]
gi|311290156|gb|EFQ68712.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis DAPTO 516]
gi|315030220|gb|EFT42152.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX4000]
gi|315144757|gb|EFT88773.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX2141]
gi|315152149|gb|EFT96165.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0031]
gi|315159088|gb|EFU03105.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0312]
gi|315161681|gb|EFU05698.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0645]
gi|315164817|gb|EFU08834.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1302]
gi|315574365|gb|EFU86556.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0309B]
gi|315580160|gb|EFU92351.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0309A]
gi|323481392|gb|ADX80831.1| SpoU type rRNA methylase [Enterococcus faecalis 62]
gi|327535688|gb|AEA94522.1| TrmH family RNA methyltransferase [Enterococcus faecalis OG1RF]
gi|329572242|gb|EGG53902.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TX1467]
gi|397337231|gb|AFO44903.1| SpoU type rRNA methylase [Enterococcus faecalis D32]
gi|402403286|gb|EJV35965.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R508]
gi|427185783|emb|CCO73007.1| RNA methyltransferase, TrmH family [Enterococcus faecalis str.
Symbioflor 1]
gi|429513282|gb|ELA02869.1| rRNA methylase [Enterococcus faecalis OG1X]
gi|429515628|gb|ELA05139.1| rRNA methylase [Enterococcus faecalis M7]
Length = 258
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|163803682|ref|ZP_02197544.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
gi|159172521|gb|EDP57384.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
Length = 244
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI---LKELPLPEDVPQHRVD 60
+ +KQR+ G +++G++ +++ ++L +K +F + + KEL E V
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSSLTVKQIFATAEFLGQHSKELNGFESV---EAS 69
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ S LV+ I + E+P + P + L I D + DPGN+G+I+RV
Sbjct: 70 LDDLTKASTLVSNNAAIAVVEIPELKV----PEAKGLMIALDGVSDPGNLGTIIRVADWY 125
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + ++ S C D Y+ K I A
Sbjct: 126 GIQHIIASTDCADPYNPKTISAT 148
>gi|421871069|ref|ZP_16302691.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Brevibacillus laterosporus GI-9]
gi|372459696|emb|CCF12240.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Brevibacillus laterosporus GI-9]
Length = 275
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 81/154 (52%), Gaps = 19/154 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW-----DILKELPLPEDVPQHR 58
++++K RE G ++EG+ ++ +AL +N+++ + F + +++ L D P
Sbjct: 20 LQTKKGREAAGRFLIEGEHLVEEALLSNMEVVTLLFDEGKGLPATVMRALEAFSD-PVKC 78
Query: 59 VDYKNIQL--WSDLVTPPGIIGIFELPAH-------PIASIDPASLPLNIVCDNIRDPGN 109
+ ++ L S+ TP GI+ ++ ++ + D L ++ D ++DPGN
Sbjct: 79 ISTTDVVLSKLSETKTPQGIVAEVKMRSNDWDTEWKKMRKYDF----LILILDELQDPGN 134
Query: 110 MGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+G+I+R A G ++ RG VD+Y+ KV+R+
Sbjct: 135 VGTIMRTAEAAGVDAILMGRGSVDLYNGKVLRST 168
>gi|310778758|ref|YP_003967091.1| tRNA/rRNA methyltransferase SpoU [Ilyobacter polytropus DSM 2926]
gi|309748081|gb|ADO82743.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
Length = 251
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKL--KMVFFSQWDILKELPLPEDV-PQHRVD 60
+K+RK REK+ + EG + L + K K + D + + E V P++
Sbjct: 18 LKTRKYREKEKLFIAEGHKFL------DFKEIPKAIILRDGDDRYQDKVEEFVCPKYIFS 71
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIV-CDNIRDPGNMGSILRVCAA 119
S GII I+ + IASI NIV D I+DPGN+G+I+RV A
Sbjct: 72 ESLFNEISSQENSQGIILIYPMKESSIASIGD-----NIVILDRIQDPGNLGTIIRVSDA 126
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G + +V +G VD+Y+ K +R++
Sbjct: 127 AGYKDIVLLKGSVDVYNEKTVRSS 150
>gi|159037501|ref|YP_001536754.1| tRNA/rRNA methyltransferase SpoU [Salinispora arenicola CNS-205]
gi|157916336|gb|ABV97763.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
Length = 296
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 11 EKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL-----PEDVPQHRVDYKNIQ 65
E G + EG + + +AL + +F + + + L L DVP V +
Sbjct: 37 EAAGRFLAEGPQAVREALARPHTVLELFGTPAALDRHLDLVARATTADVPVSTVTDDALA 96
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
++ V P G++ + + P+A++ + L V IRDPGN G++LR A GA+ V
Sbjct: 97 GLAETVAPQGLVAVCQHLDLPLATVLARTPRLVTVLAGIRDPGNAGTVLRTADAAGAQVV 156
Query: 126 VCSRGCVDIYDNKVIRAAA 144
V + VD Y+ KV+RA+A
Sbjct: 157 VFAGAAVDPYNGKVVRASA 175
>gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
27560]
gi|149734771|gb|EDM50688.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium ventriosum
ATCC 27560]
Length = 255
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLW 67
K R+ G +EGK++ ++ +L V+ S+ + + L ++ V + +
Sbjct: 22 KVRKTTGTFTVEGKKMFVEIPAEDLV--SVYVSETFLKENGELVKEKKYQIVSDQVFKKI 79
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLN------IVCDNIRDPGNMGSILRVCAAVG 121
SD VTP GI+ + + ++ SID N +V D ++DPGNMG+I+R A G
Sbjct: 80 SDTVTPQGIVAVVKQKSY---SIDYIIEKRNKEKSCIVVLDRLQDPGNMGTIVRTGEAAG 136
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++ S+ DIY+ KVIR+
Sbjct: 137 ISGIIMSKDSADIYNPKVIRST 158
>gi|407978341|ref|ZP_11159173.1| SpoU rRNA methylase family protein [Bacillus sp. HYC-10]
gi|407415109|gb|EKF36722.1| SpoU rRNA methylase family protein [Bacillus sp. HYC-10]
Length = 247
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K+R K G ++EGK ++ +ALK + +K + + D+L P D+ + + +
Sbjct: 18 LHTKKERTKTGLFLVEGKHLVEEALKCGV-VKELMVTAPDMLPADTQP-DIELYELSEEA 75
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ TP I + LP ++ D ++DPGN+G+++R A G
Sbjct: 76 FAAMTETETPQHIAAVCTLP-----EFKEKKYERILLLDAVQDPGNLGTLIRTADAAGLD 130
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ G VD ++ K +R+A
Sbjct: 131 AVILGDGTVDAFNGKTLRSA 150
>gi|325282012|ref|YP_004254554.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
20712]
gi|324313821|gb|ADY34374.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
20712]
Length = 253
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 3/141 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKL-KMVFFSQWDILKELPLPEDVPQHRVDYK 62
++ +K REK +EG++++ + L + LK+ ++ F W + L +V D +
Sbjct: 13 LEKKKFREKYNLFKIEGEKLVGELLHSPLKIHSLIAFPSWLEQNKKALS-NVNIIEADER 71
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S+ + P +I + E+P H I + L++V + I+DPGN+G+ILRV G
Sbjct: 72 EMHGISNFQSLPEVIALAEIPVH-IYRKEEVLDSLSLVLNGIQDPGNLGTILRVADWFGI 130
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ C C +Y+ K ++A+
Sbjct: 131 GNIFCDADCAGVYNPKCVQAS 151
>gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
Length = 267
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP-EDVPQHR---- 58
++ +K R+K+ ++EG ++ +AL + ++ + + D+ K +PL +P
Sbjct: 17 LQEKKHRDKQNKYVVEGIHLVQEALSSGADIECIAY---DMDKGIPLELRQIPDRGQGAE 73
Query: 59 ---VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V + I SD +P + + A + L IV D ++DPGN+G+I+R
Sbjct: 74 WIGVSHAVISKVSDTPSPQPVFAVVRKEARQWQDLIMRENGLVIVLDGLQDPGNVGTIIR 133
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA V+ RGC D+Y+ K +R+
Sbjct: 134 GADAVGAAGVILGRGCADLYNPKTLRST 161
>gi|307290546|ref|ZP_07570458.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0411]
gi|306498401|gb|EFM67906.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0411]
Length = 258
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|227820613|ref|YP_002824583.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
gi|227339612|gb|ACP23830.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
Length = 285
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ +K R++ M EG +++IDAL K+K + +++ K P V
Sbjct: 33 LAQKKHRDETRSFMAEGLKLVIDALDLGWKIKTLVYAK--AAKGKPQVGQVAAKAVARGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIFE P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVISTITRRDNPQMVVGIFEQRYQPLKDIRPGEGETYVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA ++ D + + +RA
Sbjct: 151 RTADAAGASGIILVGETTDPFSLETVRA 178
>gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. JDR-2]
gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
Length = 264
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ--HRVDYKNI 64
+K R++ G ++EG ++ +A K++ ++ V ++ E +P ++ Q + +
Sbjct: 23 KKYRDRTGLFIIEGVHLVQEAFKSSAAVQCVVYN-----SERGIPHELEQLAREGGAEWV 77
Query: 65 QLWSDLV-------TPPGIIGIFE-LPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
Q + ++ TPP + + E L A SL +V D +RDPGN+G+I+R
Sbjct: 78 QATTQVMAKCTGTDTPPPVFAVLEKLKRDDTALFRNNSLV--VVLDGVRDPGNVGTIIRS 135
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA VV +G VD+Y+ K +R+
Sbjct: 136 ADAVGADAVVLGKGSVDLYNPKTVRST 162
>gi|255975196|ref|ZP_05425782.1| rRNA methylase [Enterococcus faecalis T2]
gi|307285815|ref|ZP_07565949.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0860]
gi|255968068|gb|EET98690.1| rRNA methylase [Enterococcus faecalis T2]
gi|306502576|gb|EFM71843.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0860]
Length = 258
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|209547650|ref|YP_002279567.1| tRNA/rRNA methyltransferase SpoU [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533406|gb|ACI53341.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 286
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ ++K RE+ G + EG +++IDA++ ++ + +++ K PL E +
Sbjct: 33 LTNKKSREESGTFLAEGLKLVIDAIELGWTIRTLVYAK--AAKGKPLVEQMAARTVASGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIFE P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIASITRRDNPQMVVGIFEQRWMPLRDIRPRDGETWVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA ++ D + + +RA
Sbjct: 151 RTADAAGASGIILVGETTDPFSLETVRA 178
>gi|198275948|ref|ZP_03208479.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
gi|198271577|gb|EDY95847.1| RNA methyltransferase, TrmH family [Bacteroides plebeius DSM 17135]
Length = 252
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+ + + EG +++ D L ++ +QW L+ PL V +
Sbjct: 13 LEMKKYRKAEKAFLAEGNKLVNDLLGHFSCKLLIATAQW--LETHPLLLAQETIEVSAEE 70
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVC---DNIRDPGNMGSILRVCAAV 120
+ S L TP ++ +F+LP++ SLP + +C D+++DPGN+G+I+R+
Sbjct: 71 LARASLLKTPQEVLAVFDLPSYTYDD----SLPGHSLCLALDDVQDPGNLGTIIRIADWF 126
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + CS+G D ++ K ++A
Sbjct: 127 GIEDIFCSQGTADAFNPKTVQAT 149
>gi|434394178|ref|YP_007129125.1| tRNA/rRNA methyltransferase (SpoU) [Gloeocapsa sp. PCC 7428]
gi|428266019|gb|AFZ31965.1| tRNA/rRNA methyltransferase (SpoU) [Gloeocapsa sp. PCC 7428]
Length = 263
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-QWDILKELPLPEDVPQHR---- 58
+ S K+R ++G ++EG +L +A + L+ V + +W ++ + Q +
Sbjct: 16 LHSAKERREQGVFLIEGTHLLQEACRVKYPLETVCCTPEWQSSNQMLWQQASQQAKRGEI 75
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V + ++ + V P G++ H + I L + +N++DPGN+G+I+R
Sbjct: 76 VSEEVLKAIATTVNPDGVVAT---APHCLERIQVPYNGLALALENVQDPGNLGTIIRTAK 132
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAAA 144
A GA + S VDIY+ KV+RA A
Sbjct: 133 AAGANGLWLSANSVDIYNPKVLRATA 158
>gi|424898008|ref|ZP_18321582.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393182235|gb|EJC82274.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 286
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ ++K RE+ G + EG +++IDA++ ++ + +++ K PL E +
Sbjct: 33 LTNKKSREESGTFLAEGLKLVIDAIELGWTIRTLVYAK--AAKGKPLVEQMAAKTVASGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIFE P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIASITRRDNPQMVVGIFEQRWKPLREIRPRDGETWVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA ++ D + + +RA
Sbjct: 151 RTADAAGASGIILIGETTDPFSLETVRA 178
>gi|167752349|ref|ZP_02424476.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216]
gi|167660590|gb|EDS04720.1| RNA methyltransferase, TrmH family [Alistipes putredinis DSM 17216]
Length = 249
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++ R + G + EG + + + + L+++ +F + L E V +
Sbjct: 12 LADKRSRTEHGLFVAEGHKFIGELCTSALRVRKIFALEG-------LFEGGEVETVSSRE 64
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S L TP + + E+P HP D A L + D +++PGN+G+I+R+ G
Sbjct: 65 MERLSLLKTPSDSLALVEIPHHPFRP-DTAQRELVLALDQVQNPGNLGTIIRLADWFGIP 123
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++VCS D Y+ KV++A
Sbjct: 124 EIVCSPTTADCYNPKVVQAT 143
>gi|381211893|ref|ZP_09918964.1| rRNA methylase [Lentibacillus sp. Grbi]
Length = 245
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 25/149 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVF------FSQW-DILKELPLPEDVPQ 56
++ RK R + G + EG ++ +A +N ++ + +S W D + + V Q
Sbjct: 16 LQRRKGRRQSGTFLAEGFHLVEEAYNSNWEIAEIIVEDGLDYSGWRDHFSAVTVSRKVLQ 75
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVC--DNIRDPGNMGSIL 114
H + TP GI + ++ +P + V D+++DPGN+G+I+
Sbjct: 76 HITRTE---------TPQGIAAVVKMK-------EPKEFAGDTVLLIDSLQDPGNLGTII 119
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G V+ +G VD+Y++KVIRA
Sbjct: 120 RTADAAGFDMVLLGKGTVDLYNDKVIRAT 148
>gi|110636002|ref|YP_676210.1| tRNA/rRNA methyltransferase SpoU [Chelativorans sp. BNC1]
gi|110286986|gb|ABG65045.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
Length = 286
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ---WDILKELPLPEDVPQH----RV 59
+K R+++ M EG ++++DAL + ++ + +++ + E V V
Sbjct: 34 KKFRDRERAFMAEGLKLVLDALDSGWAIRTLIYAKAGRGNAAVEKAAARTVAAGGLVLEV 93
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
K + + P ++G+FE P+ + P L + D +RDPGN+G+I+R A
Sbjct: 94 SEKVLSAITRRDNPQMVVGVFEQRWLPLKEVTPKGEDLWVALDRVRDPGNLGTIIRTVDA 153
Query: 120 VGARQVVCSRGCVDIYDNKVIRA 142
VGAR V+ C D + + +RA
Sbjct: 154 VGARGVILVGECTDPFSVETVRA 176
>gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
Length = 266
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLK-MVFFSQWDILKELPLPEDVPQHR---- 58
++ +K R+K+ ++EG ++ +AL + ++ + + I +EL D Q
Sbjct: 17 LQEKKHRDKQNKYVVEGIHLVQEALSSGADIECLAYDVDKGIPQELRHITDTGQGAEWIG 76
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V + I SD +P + + A + L +V D ++DPGN+G+I+R
Sbjct: 77 VSHAVISKVSDTPSPQQVFAVIRKEARQWQDLILRENGLVVVLDGLQDPGNVGTIIRSAD 136
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA VV RGC D+Y+ K +R+
Sbjct: 137 AVGAAGVVLGRGCADLYNPKTLRST 161
>gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase SpoU [Geobacillus sp. Y412MC61]
gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase SpoU [Geobacillus sp. Y412MC52]
gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
Length = 251
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHR 58
++K R++ G +LEG ++ +A+K+N L + + W++ VP
Sbjct: 20 TKKGRDETGLFLLEGFHLVEEAIKSNAPLVELIVDERTAVPPGWNV-------TGVPVTI 72
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V ++ S TP GI + + + + A ++ D ++DPGN+G+++R
Sbjct: 73 VTEAVMKAISSTETPQGIAAVCRQLSTELEGVKTA-----LLIDAVQDPGNLGTMIRTAD 127
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G V+ GC D+Y+ KV+RA
Sbjct: 128 AAGIDAVILGEGCADLYNPKVVRAT 152
>gi|284799730|ref|ZP_05984713.2| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
gi|284796977|gb|EFC52324.1| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
Length = 263
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 72/152 (47%), Gaps = 23/152 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH-RVDYK 62
+ K R + G +LEG +L L++ K V+ LPE QH +
Sbjct: 19 LTQAKARRESGETVLEGVHLLQTYLQSGGTPKQVY-----------LPEKKQQHIEIQEI 67
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIAS-----ID---PASLPLN---IVCDNIRDPGNMG 111
QL L+T G + ++ + A ID A LP + +V + ++DPGN G
Sbjct: 68 TAQLDEGLITWVGNEALSKITSLTDADDVMTWIDIPQQAGLPSDGDCVVLERVQDPGNAG 127
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+ILR AA G RQ+VCS VDI+ KV+RA
Sbjct: 128 TILRSAAAAGVRQIVCSNDSVDIWSPKVLRAG 159
>gi|190890065|ref|YP_001976607.1| rRNA methylase [Rhizobium etli CIAT 652]
gi|190695344|gb|ACE89429.1| rRNA methylase protein [Rhizobium etli CIAT 652]
Length = 286
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ ++K RE+ G + EG +++IDA++ ++ + +++ K PL E +
Sbjct: 33 LTNKKSREESGTFLAEGLKLVIDAIELGWTIRTLVYAK--AAKGKPLVEQMAAKTVASGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIF+ P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIGSITRRENPQMVVGIFDQRWKPLKDIRPREGETWVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ D + + +RA
Sbjct: 151 RTADAAGASGVILVGEATDPFSLETVRA 178
>gi|399927520|ref|ZP_10784878.1| tRNA/rRNA methyltransferase SpoU [Myroides injenensis M09-0166]
Length = 221
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 16 LMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR---VDYKNIQLWSDLVT 72
+ EG +++ + LK++++L ++ + PL V + V +++ S L +
Sbjct: 2 FIAEGIKVIDELLKSSIELDHIYAIE-------PLELGVSTSKFTIVSSDDLKKMSALSS 54
Query: 73 PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCV 132
P + +F++P +D +L + D++RDPGN+G+I+R+C G ++CS+ V
Sbjct: 55 PSNCLAVFKIPKQK--EVDYNNLI--VALDDVRDPGNLGTIIRLCDWFGIEDIICSKETV 110
Query: 133 DIYDNKVIRAA 143
DIY+ KV++A
Sbjct: 111 DIYNPKVVQAT 121
>gi|347527858|ref|YP_004834605.1| RNA methyltransferase [Sphingobium sp. SYK-6]
gi|345136539|dbj|BAK66148.1| RNA methyltransferase [Sphingobium sp. SYK-6]
Length = 278
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+++G + EG RIL +A + + +M+F + P + +D
Sbjct: 19 LREKKLRKREGLFLAEGLRILTEARELGVLPEMIFLASGAD------PHPLASALIDAVE 72
Query: 64 IQLWSDLVTPPGI-------------IGIFELPAHPIASIDPASLPLNIVCDNIRDPGNM 110
+ T P I IG++ P+ ++D A P+ V +RDPGN+
Sbjct: 73 AAGGDVIFTTPDILGKMSGKDNAQTLIGVYRDRLTPLPALDRARAPIWFVAQAMRDPGNL 132
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+++R+ AVGA V+ CVD + + +RA+
Sbjct: 133 GTLMRIGDAVGAGGVILVDDCVDPFSVEAVRAS 165
>gi|334345272|ref|YP_004553824.1| tRNA/rRNA methyltransferase SpoU [Sphingobium chlorophenolicum L-1]
gi|334101894|gb|AEG49318.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
L-1]
Length = 265
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 13/149 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDV--PQHRVDY 61
++ +K R+ +G + EG RIL +A + + +M+F + PL D+
Sbjct: 19 LREKKFRKAEGLFLAEGLRILTEAREEGVLPEMLFHAG----STHPLAIDLIAAMEAAGG 74
Query: 62 KNIQLWSDLVT-------PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
I+ D+++ P ++G++ P+A +D + IV ++RDPGN+G+IL
Sbjct: 75 DVIETTPDILSKISGKDNPQAVVGVYRDRLTPLAKLDRTKADIWIVAQSLRDPGNLGTIL 134
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA ++ CVD + + +RA+
Sbjct: 135 RTGDAVGAGGLILIDDCVDPFSVESVRAS 163
>gi|440225337|ref|YP_007332428.1| integration host factor subunit beta [Rhizobium tropici CIAT 899]
gi|440036848|gb|AGB69882.1| integration host factor subunit beta [Rhizobium tropici CIAT 899]
Length = 286
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K RE+ G + EG +++IDAL+ ++ + +++ K PL E V V + L
Sbjct: 36 KKSREESGAFLAEGLKLVIDALELGWTIRTLVYAK--AAKGKPLVEQVAAKTVAAGGLVL 93
Query: 67 W-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
S+ V P ++G+FE + + P + + D +RDPGN+G+I+R
Sbjct: 94 EVSEKVIGSITRRDNPQMVVGVFEQRWQQLRDVKPKTGETWVALDRVRDPGNLGTIIRTA 153
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A GA V+ D + + +RA
Sbjct: 154 DAAGASGVILVGETTDPFSLETVRA 178
>gi|255659702|ref|ZP_05405111.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
20544]
gi|260848276|gb|EEX68283.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
20544]
Length = 271
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL------PLPEDV 54
M ++ RK R K+G +EG R+ + ++ ++ + KE L
Sbjct: 14 MESLRLRKHRAKEGLFRIEGVRLSEMVAASGWAIRFGLYTAELVEKERGRALVEALQAKC 73
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASID------PASLPLNIVCDNIRDPG 108
P + + + + TP GI + E + + A PL +V D ++DPG
Sbjct: 74 PLYEIGAALAKKVAATDTPQGIFLVAEQQKKSLPQMAEHLQQAAARKPLLVVLDGVQDPG 133
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
N G+I+R AVGA V+ ++G VD++ +K +RA
Sbjct: 134 NAGTIIRTADAVGADGVILTKGSVDVFSDKTVRA 167
>gi|332665335|ref|YP_004448123.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
1100]
gi|332334149|gb|AEE51250.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
1100]
Length = 268
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 7/149 (4%)
Query: 2 VYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF----SQWDILKELP-LPEDVPQ 56
+ ++ ++R K+G + EG + AL+A +++ + + + + L+ LP LP ++PQ
Sbjct: 20 ILLEKARERRKQGLFVAEGLIEVGMALRAGYEVEQLLYDPEITSFAALQSLPKLPANLPQ 79
Query: 57 HRVDYKN--IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
++ ++ + P ++ + + P + + P PL +V + + PGN+G+IL
Sbjct: 80 KLIEVSGSVMEKIAYRANVPNVVAVLKTPERALNNFSPGKNPLILVLETVEKPGNLGAIL 139
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G V D Y+ VIRA+
Sbjct: 140 RTADAAGVHAVFLCDPQTDWYNPNVIRAS 168
>gi|406837284|ref|ZP_11096878.1| 23S rRNA methyltransferase [Lactobacillus vini DSM 20605]
Length = 258
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 14/147 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR----- 58
+K++K R+ + +LEG ++ +AL A +KL+++ + D ++ L + + Q +
Sbjct: 18 LKTKKGRKIQQSYLLEGWHLVKEALLAQIKLQVILVTA-DFKEQAELTKLINQEQQLILI 76
Query: 59 --VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN-IVCDNIRDPGNMGSILR 115
V + I SD P GI I L +A I PA L ++ DN++DPGN+G+++R
Sbjct: 77 SPVIAEKI---SDTGHPQGIFAIAALE-KSLAEI-PAELAGKWLLLDNVQDPGNIGTMVR 131
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRA 142
A G VV RG D++ KV+R+
Sbjct: 132 TADAAGFSGVVFGRGTADLFQPKVVRS 158
>gi|323340004|ref|ZP_08080270.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|417974004|ref|ZP_12614832.1| 23S rRNA methyltransferase [Lactobacillus ruminis ATCC 25644]
gi|323092510|gb|EFZ35116.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|346329633|gb|EGX97924.1| 23S rRNA methyltransferase [Lactobacillus ruminis ATCC 25644]
Length = 255
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WDILKELPLPEDVPQHRVDYK 62
+ +K R K+G ML+G ++ +A+ + + + +Q + EL +P++V +
Sbjct: 18 LSQKKARIKQGKYMLDGWHLVKEAILFDQPISEILVTQDFKHRNELEVPDNVEVIEISDN 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S+ +P GI + LP + A+ + D ++DPGN+G+++R A G
Sbjct: 78 VAKHLSETPSPQGIFAVVNLPENAEEKPKKATGAW-LFLDGVQDPGNIGTMVRTADACGF 136
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
VV GC D++ KV+RA
Sbjct: 137 SGVVFGEGCADMFQPKVVRA 156
>gi|257087434|ref|ZP_05581795.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
gi|257416641|ref|ZP_05593635.1| 23S rRNA methyltransferase [Enterococcus faecalis ARO1/DG]
gi|257419857|ref|ZP_05596851.1| rRNA methylase [Enterococcus faecalis T11]
gi|257421954|ref|ZP_05598944.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|422697830|ref|ZP_16755761.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1346]
gi|422706978|ref|ZP_16764675.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0043]
gi|422724764|ref|ZP_16781240.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX2137]
gi|256995464|gb|EEU82766.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
gi|257158469|gb|EEU88429.1| 23S rRNA methyltransferase [Enterococcus faecalis ARO1/DG]
gi|257161685|gb|EEU91645.1| rRNA methylase [Enterococcus faecalis T11]
gi|257163778|gb|EEU93738.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|315025411|gb|EFT37343.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX2137]
gi|315155336|gb|EFT99352.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0043]
gi|315173665|gb|EFU17682.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX1346]
Length = 258
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWRTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|403054271|ref|ZP_10908755.1| tRNA/rRNA methyltransferase [Acinetobacter bereziniae LMG 1003]
Length = 258
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 21/145 (14%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR--------VDY 61
R+K+G +LEG + + L+ K+ +F ++ + E L E + Q++ Y
Sbjct: 27 RKKQGQTVLEGTHLSLAWLEKGRKINSIFTTEHALDHE-DLGEIIDQYQGMVFVISEALY 85
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIA---SIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
K++ S L T + I +LP+ A S D ++ +N++DPGN+G++LR A
Sbjct: 86 KDL---STLGTTLACLAIVDLPSSTQALNFSED------TLILENVQDPGNVGTLLRSAA 136
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G Q+VC++G ++ +V+RA
Sbjct: 137 AAGIEQIVCTKGSASLWSPRVLRAG 161
>gi|422729557|ref|ZP_16785958.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0012]
gi|315150158|gb|EFT94174.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX0012]
Length = 258
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWRTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
S+L T GI+ I L S+ L + DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEKSLSFKGGWL--LLDNIQDPGNVGTMIRTADAAGLAG 139
Query: 125 VVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 140 VILGKGTADIYNTKVLRS 157
>gi|149197587|ref|ZP_01874637.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
gi|149139157|gb|EDM27560.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
Length = 248
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALK-----------ANLKLKMVFFSQWDILKELP 49
+ +K+R R K + + EGKR +ALK A K + F +L E
Sbjct: 13 FIKLKTRGGRRKSNYFLCEGKRCCDEALKYAANSIECCVVAQEKADLDFLDMKFVLSE-- 70
Query: 50 LPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASL-PLNIVCDNIRDPG 108
K + S P GI+ + + P P+SL P +V D + +PG
Sbjct: 71 ------------KEMSELSLTENPQGILMLMKKPDKVEC---PSSLKPFVLVLDGVAEPG 115
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
NMG+ILR AVG +V+ + G VD Y+ K +RA
Sbjct: 116 NMGTILRTALAVGLERVILTSGTVDPYNAKAVRAG 150
>gi|228474088|ref|ZP_04058829.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624]
gi|228274602|gb|EEK13443.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624]
Length = 250
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW--DILKELPLPEDVPQHRVDY 61
+ +K R + G ++EGK+ +++ ++A K ++++ + L + PL V
Sbjct: 13 LSQKKHRSETGLFVVEGKKSIVEFVEAGYKAEVIYATDTFSASLGQQPLT------LVSK 66
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
+ + S L P + IF P I L L + DNI+DPGN+G+++R+C G
Sbjct: 67 EELSKLSTLKHPDEGVAIFRQPKRK--GILQEGLILAL--DNIQDPGNLGTLIRLCDWFG 122
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++CS VD Y+ KV++A+
Sbjct: 123 IETLLCSEQTVDCYNPKVVQAS 144
>gi|210623621|ref|ZP_03293947.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
gi|210153491|gb|EEA84497.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
Length = 264
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--------WDILKELPLPEDVPQHRV 59
K R K+ ++EG RIL A + + VF ++ LKEL ++ ++
Sbjct: 22 KNRNKESKFIIEGYRILTLAFEQKDIIDYVFINEDFENKEEHRKFLKELE-DANIKVYKT 80
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
KN + D GI+ + + IV D I+DPGNMG+I+R A
Sbjct: 81 TNKNFKDMVDTENTQGILAVVSYEKKTLEKNLTDDDKYIIVLDRIQDPGNMGTIIRTADA 140
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
GA ++ +GCVDIY+ KVIR+
Sbjct: 141 AGADAIITLKGCVDIYNPKVIRST 164
>gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase SpoU [Veillonella parvula DSM 2008]
gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
Length = 264
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILID-ALKANLKLKMVFFSQ------WDILKELPLPED 53
++ ++ RK R+K G ++EG R + D A +K ++ S+ D+L +L +
Sbjct: 15 IISLRQRKNRQKNGEYIVEGIRSIRDIAAMGAVKTIVIRESKAQDKNILDLL-DLDTVQS 73
Query: 54 VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
VP++ + V G++ I P + I SI L I D ++DPGN+G+I
Sbjct: 74 VPKYIAQDPVFDKVDNTVNGQGVVAIVSKPTYDIESISIVD-GLYITLDGVQDPGNLGTI 132
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+R A G + + +G VD +++K +R+
Sbjct: 133 IRTAVAAGVKGIFLMKGTVDPFNDKTVRST 162
>gi|395238205|ref|ZP_10416143.1| rRNA methylase [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477909|emb|CCI86120.1| rRNA methylase [Lactobacillus gigeriorum CRBIP 24.85]
Length = 255
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL----PEDVPQHRV 59
++ +K REK G ++EG ++ +ALKA K + ++ +++ + P D +
Sbjct: 18 LEQKKYREKTGTYLIEGFHLVEEALKAKRKYTFILATENALMQAVASLGLDPNDNRIVLI 77
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN----IVCDNIRDPGNMGSILR 115
K + S +P GI + ++ P + N ++ D++ DPGN+G+I+R
Sbjct: 78 SQKIAEHLSATKSPQGIFMVLKIS-------QPKNFSFNYGKWVMLDHLADPGNVGTIIR 130
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRA 142
A G ++ S VD+Y++KV RA
Sbjct: 131 TADAAGFTGIILSPRSVDLYNSKVQRA 157
>gi|288799931|ref|ZP_06405390.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
str. F0039]
gi|288333179|gb|EFC71658.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
str. F0039]
Length = 256
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKM-VFFSQWDILKELPLPEDVPQHRVDYKNIQ 65
+K R+++ + EG +++ D L K+K FS LKE + + +
Sbjct: 23 KKNRQQERLFVAEGPKVIADLLT---KIKAHTIFSTSSKLKEFSSKQADNIIEITDSELS 79
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
S L P ++ +F P P P + L + D ++DPGN+G+I+R+ G + +
Sbjct: 80 KISFLQHPQQVLAVF--PFFPTTEATPQN-QLILALDGVQDPGNLGTIIRIADWFGIKNI 136
Query: 126 VCSRGCVDIYDNKVIRAA 143
VCS VD+Y+ KVI+A+
Sbjct: 137 VCSEDTVDVYNPKVIQAS 154
>gi|403237736|ref|ZP_10916322.1| 23S rRNA methyltransferase [Bacillus sp. 10403023]
Length = 249
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 26/151 (17%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQH-RVD 60
+ ++K+R+K G M+EG ++ +AL +++ I++EL + E D+P VD
Sbjct: 18 LHTKKERDKTGTFMIEGFHLVEEALTSDV-----------IIRELIISETIDIPSSWNVD 66
Query: 61 YKNIQL--------WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGS 112
+I + SD T G+ I E + ++ D ++DPGN+G+
Sbjct: 67 NLSITIVTEKVMKEISDTDTSQGVAAICEQYTFK----EGGHFTRLLLVDAVQDPGNLGT 122
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
++R A G V+ G VD+Y++KV+R+
Sbjct: 123 MIRTADAAGIDAVMIGEGTVDVYNSKVVRST 153
>gi|397688597|ref|YP_006525916.1| rRNA methylase [Pseudomonas stutzeri DSM 10701]
gi|395810153|gb|AFN79558.1| rRNA methylase [Pseudomonas stutzeri DSM 10701]
Length = 241
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-VPQHRVDYK 62
+ +K R + G ++EG+ +L++ KA L+ ++ S+ + + H V +
Sbjct: 9 LHQKKYRAEFGHFLVEGEHLLLELQKAALQNPLLQRSELYVTAAYAHWQSPFRTHVVSDR 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ +D P GI+ + +PA ++ PA+ P I I+DPGN+G+ILR A
Sbjct: 69 QMAQIADTKAPQGIVAVVPMPA----TVAPAAEPGERAIYLHEIQDPGNLGTILRTLAWF 124
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + + S G VD Y+ KV+R++
Sbjct: 125 GNFRCLLSPGSVDPYNPKVVRSS 147
>gi|354603471|ref|ZP_09021469.1| hypothetical protein HMPREF9450_00384 [Alistipes indistinctus YIT
12060]
gi|353348851|gb|EHB93118.1| hypothetical protein HMPREF9450_00384 [Alistipes indistinctus YIT
12060]
Length = 293
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ +K ++ S L TP ++ + E+P H + S+ S L++ D ++DPGNMG+ILR+
Sbjct: 108 ISHKEMERISSLKTPSDMLALVEIPRHGL-SVRGLSGELSLALDGVQDPGNMGTILRLAD 166
Query: 119 AVGARQVVCSRGCVDIYDNKVIRA 142
G R V+CS D ++ KV++A
Sbjct: 167 WFGMRDVICSETTADCFNPKVVQA 190
>gi|417110212|ref|ZP_11963547.1| rRNA methylase protein [Rhizobium etli CNPAF512]
gi|327188566|gb|EGE55776.1| rRNA methylase protein [Rhizobium etli CNPAF512]
Length = 286
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K RE+ G + EG +++IDA++ ++ + +++ K PL E + V
Sbjct: 33 LTNKKSREESGTFLAEGLKLVIDAIELGWTIRTLVYAK--AAKGKPLVEQMAAKTVASGG 90
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIF+ P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIGSITRRDNPQMVVGIFDQRWKPLKDIRPREGETWVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ D + + +RA
Sbjct: 151 RTADAAGASGVILVGEATDPFSLETVRA 178
>gi|383818013|ref|ZP_09973312.1| tRNA/rRNA methyltransferase [Mycobacterium phlei RIVM601174]
gi|383339661|gb|EID17995.1| tRNA/rRNA methyltransferase [Mycobacterium phlei RIVM601174]
Length = 256
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R + G + EG ++ AL+ L + VF ++ + L D P V + + S+
Sbjct: 13 RRRSGRFLAEGPNLVEAALRRGLVCE-VFATETAYERFGALLADAPVTLVTERAAKALSE 71
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
VTP G++ + E P + + A L V + +PGN G+++R A+GA VV +
Sbjct: 72 TVTPVGLVAVCETPEASLGEVLAAGPRLVAVAVELSEPGNAGTLIRTADAMGADAVVMAG 131
Query: 130 GCVDIYDNKVIRAAA 144
VD Y+ K +R++A
Sbjct: 132 HSVDPYNGKCLRSSA 146
>gi|169629410|ref|YP_001703059.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977]
gi|419707892|ref|ZP_14235364.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus M93]
gi|419715632|ref|ZP_14243033.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus M94]
gi|420861779|ref|ZP_15325175.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0303]
gi|420868528|ref|ZP_15331910.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0726-RA]
gi|420872972|ref|ZP_15336349.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0726-RB]
gi|420909917|ref|ZP_15373230.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-0125-R]
gi|420916372|ref|ZP_15379676.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-0125-S]
gi|420921538|ref|ZP_15384835.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-0728-S]
gi|420927198|ref|ZP_15390480.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-1108]
gi|420966698|ref|ZP_15429903.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0810-R]
gi|420977537|ref|ZP_15440716.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-0212]
gi|420982918|ref|ZP_15446087.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-0728-R]
gi|420987490|ref|ZP_15450646.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0206]
gi|421007511|ref|ZP_15470622.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0119-R]
gi|421012839|ref|ZP_15475924.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0122-R]
gi|421017745|ref|ZP_15480805.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0122-S]
gi|421023236|ref|ZP_15486283.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0731]
gi|421029514|ref|ZP_15492548.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0930-R]
gi|421033676|ref|ZP_15496698.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0930-S]
gi|421037735|ref|ZP_15500747.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0116-R]
gi|421043326|ref|ZP_15506327.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0116-S]
gi|169241377|emb|CAM62405.1| Possible tRNA/rRNA methyltransferase [Mycobacterium abscessus]
gi|382942531|gb|EIC66846.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus M94]
gi|382944944|gb|EIC69247.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus M93]
gi|392067998|gb|EIT93845.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0726-RA]
gi|392072000|gb|EIT97841.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0726-RB]
gi|392076940|gb|EIU02771.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0303]
gi|392120512|gb|EIU46278.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-0125-S]
gi|392122291|gb|EIU48056.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-0125-R]
gi|392131374|gb|EIU57120.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-0728-S]
gi|392134431|gb|EIU60172.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-1108]
gi|392166737|gb|EIU92420.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-0212]
gi|392172398|gb|EIU98069.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
6G-0728-R]
gi|392181769|gb|EIV07420.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0206]
gi|392198964|gb|EIV24574.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0119-R]
gi|392204633|gb|EIV30220.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0122-R]
gi|392210531|gb|EIV36098.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0122-S]
gi|392214205|gb|EIV39757.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0731]
gi|392229019|gb|EIV54531.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0930-R]
gi|392229416|gb|EIV54927.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0116-R]
gi|392230217|gb|EIV55727.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0930-S]
gi|392237178|gb|EIV62672.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
4S-0116-S]
gi|392252139|gb|EIV77608.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium abscessus
3A-0810-R]
Length = 250
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R + G + EG ++ AL++ ++ +F + I + + L + P RV + + SD
Sbjct: 13 RRRAGLFLAEGPNLVEAALRSG-AVERIFATDAAIERFVDLLAEAPVRRVTERAAKALSD 71
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
VTP G++ + + S IV +I +PGN G+++RV A+GA VV +
Sbjct: 72 TVTPVGLVAQCRTVVSTWSQVTARSPRFVIVAVDISEPGNAGTLIRVADAMGADAVVLAG 131
Query: 130 GCVDIYDNKVIRAAA 144
VD ++ K +RA+A
Sbjct: 132 NSVDPFNGKSLRASA 146
>gi|335996524|ref|ZP_08562441.1| 23S rRNA methyltransferase [Lactobacillus ruminis SPM0211]
gi|335351594|gb|EGM53085.1| 23S rRNA methyltransferase [Lactobacillus ruminis SPM0211]
Length = 255
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WDILKELPLPEDVPQHRVDYK 62
+ +K R K+G ML+G ++ +A+ + + + +Q + EL +P++V +
Sbjct: 18 LSQKKARIKQGKYMLDGWHLVKEAILFDQPISEILVTQDFKHRNELEVPDNVEIIEISDN 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ S+ +P GI + LP + A+ + D ++DPGN+G+++R A G
Sbjct: 78 VAKHLSETPSPQGIFAVVNLPENAEEKPKKATGAW-LFLDGVQDPGNIGTMVRTADACGF 136
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
VV GC D++ KV+RA
Sbjct: 137 SGVVFGEGCADMFQPKVVRA 156
>gi|333383106|ref|ZP_08474768.1| hypothetical protein HMPREF9455_02934 [Dysgonomonas gadei ATCC
BAA-286]
gi|332827938|gb|EGK00660.1| hypothetical protein HMPREF9455_02934 [Dysgonomonas gadei ATCC
BAA-286]
Length = 252
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDAL---KANLKLKMVFFSQWDILKELPLPEDVPQHRVD 60
+K +K R + G + EG +++ D L K L + + F L EL + + V+
Sbjct: 14 LKEKKFRSEYGTFIAEGNKLVSDLLPYMKCQLLVALPGF-----LSELNITDIEEVIEVN 68
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ S L P ++ +F P HP A ID + L + D I+DPGN+G+I+R+
Sbjct: 69 ESQLAQASFLQNPQQVLAVFYQPKHPEA-IDINN-QLVLALDGIQDPGNLGTIVRLADWY 126
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + + C+ DIY+ KV++A
Sbjct: 127 GIKHIFCTHDTADIYNPKVVQAT 149
>gi|146283285|ref|YP_001173438.1| rRNA methylase [Pseudomonas stutzeri A1501]
gi|145571490|gb|ABP80596.1| rRNA methylase [Pseudomonas stutzeri A1501]
Length = 241
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-VPQHRVDYK 62
+ +K R + G ++EG+ ++++ KA L ++ S+ + + H + +
Sbjct: 9 LHQKKYRAEFGLFLVEGEHLVLELQKAALLNPLLQGSELYVTNAYEQWQSPFKTHLISDR 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ +D TP GI+ + +P P+++ P + I I+DPGN+G+ILR A G
Sbjct: 69 QMAQIADTKTPQGIVALVPMPDAPVSA--PVAGERAIYLHEIQDPGNLGTILRTLAWFGN 126
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ + S G VD Y+ KV+R++
Sbjct: 127 FRCLLSPGSVDPYNPKVVRSS 147
>gi|323496165|ref|ZP_08101223.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326]
gi|323318442|gb|EGA71395.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326]
Length = 244
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 24/149 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ + L +K VF + E + ++R +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSTLSVKQVFAT----------AEFLAEYRAELGG 62
Query: 64 IQL----------WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
+ S LV+ I + E+P+ I P + L I D + DPGN+G+I
Sbjct: 63 FECIEASLDELTKASTLVSNNAAIAVVEIPSVEI----PKAQGLMIALDGVSDPGNLGTI 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+RV G + +V S C D Y+ K I A
Sbjct: 119 IRVADWYGIKHIVASTDCADPYNPKTISA 147
>gi|307943096|ref|ZP_07658441.1| rRNA methylase [Roseibium sp. TrichSKD4]
gi|307773892|gb|EFO33108.1| rRNA methylase [Roseibium sp. TrichSKD4]
Length = 279
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYK- 62
+ RK R + G + EG ++ DAL+A ++ + + +E P+ +
Sbjct: 31 IAQRKHRTQSGLFVAEGLKLATDALEAGWDVR--YLALGPEARENPIAQQAAASAKARGA 88
Query: 63 -----NIQLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
N + S + P ++G++E +++IDP S + D +RDPGN+G+++
Sbjct: 89 LILEVNTAILSAMTRKDNPQMVVGVYEQKTVSLSNIDPNSAATWVALDRVRDPGNLGTVI 148
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R AVGA VV C D + + +RA
Sbjct: 149 RTIDAVGASGVVLVGDCTDPFAVETVRAT 177
>gi|120434752|ref|YP_860439.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
gi|117576902|emb|CAL65371.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
Length = 246
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ--HRVDY 61
+ +K R K ++EG + + + L ++ +L ++ + E+ Q + +D
Sbjct: 13 LSQKKFRNKHKLFVVEGLKGVREFLNSDFELVSLYVVDGEF-------EEHQQFLNIIDQ 65
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
K ++ S L TP + +F++P I L +V D +RDPGN+G+I+R+C G
Sbjct: 66 KELKKISFLKTPQKALAVFKIPVKRDLKIGD----LTVVLDGVRDPGNLGTIIRLCDWFG 121
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++CS VD Y+ KV++A+
Sbjct: 122 IENLICSLDTVDCYNPKVVQAS 143
>gi|397670711|ref|YP_006512246.1| TrmH family RNA methyltransferase [Propionibacterium propionicum
F0230a]
gi|395141567|gb|AFN45674.1| RNA methyltransferase, TrmH family [Propionibacterium propionicum
F0230a]
Length = 266
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Query: 11 EKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDL 70
E G + EG++ + +AL A + V + + +L D+P ++ SD
Sbjct: 31 ELAGKFLAEGRQAVREALSAEDLVTGVIVADPNRHADLLGGTDIPVWLGSEATMRQLSDT 90
Query: 71 VTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRG 130
VTP GI+ + P ++ A L ++C +RDPGN G+++R A GA V+ + G
Sbjct: 91 VTPQGIVAVCRQPRFNWDDVEDARLL--VICAQVRDPGNAGTVIRCADAFGADGVILTSG 148
Query: 131 CVDIYDNKVIRAA 143
V++++ K +R++
Sbjct: 149 SVEVWNPKTVRSS 161
>gi|421074006|ref|ZP_15535051.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans JBW45]
gi|392528015|gb|EIW51096.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans JBW45]
Length = 267
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF----SQWDILKELPLPEDVPQHRV 59
+K +K R++ G +EG R++ +A +AN ++ + + ++E+ L R+
Sbjct: 19 LKEKKFRDELGLFSIEGVRLVEEAAQANWSVEACVYITGAEEDQRVQEVLLLLQSRNCRM 78
Query: 60 DYKNIQLW---SDLVTPPGIIGIFELPAHPIAS-IDPASLPLNIVCDNIRDPGNMGSILR 115
+ ++ +++ P GI+ I + + + + PL +V D ++DPGN+G+I+R
Sbjct: 79 IEVSAAIYGKITEVKHPQGIMAIMKKREYRLVDCLANVEKPLLVVLDEVQDPGNVGTIIR 138
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
AA G V+ ++GC D++ K +RA+
Sbjct: 139 TAAAAGCTGVILTKGCSDVFAAKAVRAS 166
>gi|326335202|ref|ZP_08201398.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325692610|gb|EGD34553.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 242
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R + G ++EGK+ +I+ LKA K K ++ + P P V + +Q S
Sbjct: 19 RNELGLFVVEGKKSIIEFLKAGYKAKAIYATNAFS----PHLVGHPLILVSPEELQRLST 74
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
L P + IF+ H I L L + DN++DPGN+G+++R+C G ++CS
Sbjct: 75 LKHPDEGVAIFQ--QHERKEILQEGLILAL--DNVQDPGNLGTLIRLCDWFGIETLLCSE 130
Query: 130 GCVDIYDNKVIRAA 143
VD Y+ KV++A+
Sbjct: 131 QTVDCYNPKVVQAS 144
>gi|445115844|ref|ZP_21378367.1| hypothetical protein HMPREF0662_01425 [Prevotella nigrescens F0103]
gi|444840281|gb|ELX67317.1| hypothetical protein HMPREF0662_01425 [Prevotella nigrescens F0103]
Length = 257
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 33/153 (21%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K R K G + EG +I+ D L A +L +F + DI K L QH
Sbjct: 24 LETKKGRVKHGMFVAEGPKIVGDLLAAGFRLAELFDDEDDIKKVSFL-----QH------ 72
Query: 64 IQLWSDLVTPPGIIGIFELP-----AHPI--ASIDPASLP------LNIVCDNIRDPGNM 110
P G +G+F LP AH ++D +P L + D ++DPGN+
Sbjct: 73 ---------PQGKVGVFRLPDYVETAHDERETAVDEKCMPMLGEHELALALDGVQDPGNL 123
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+I+RV G +++ CS D ++ KV++A
Sbjct: 124 GTIIRVADWFGIKRIFCSMDTADCWNPKVVQAT 156
>gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
Length = 264
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVF-----FSQWDILKELPLP--ED 53
+V + RK R K G ++EG R + D + +N +K + F +I L L +
Sbjct: 15 IVSLGQRKNRNKHGEYIVEGIRSIRD-ISSNGVIKTIVIRESKFKDNNIEALLALDSMQS 73
Query: 54 VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
+P + + V GII I P H I SI + I D ++DPGN+G+I
Sbjct: 74 IPTYIAQDPIFDKIDNTVNGQGIIAIVAKPNHSIESISIED-GVYITLDGVQDPGNLGTI 132
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+R A G + + +G VD +++K +R+
Sbjct: 133 IRTAVAAGVKGIFLMKGTVDPFNDKTVRST 162
>gi|94499455|ref|ZP_01305992.1| rRNA methyltransferase [Bermanella marisrubri]
gi|94428209|gb|EAT13182.1| rRNA methyltransferase [Oceanobacter sp. RED65]
Length = 249
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 15/151 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKAN-----LKLKMVFFSQ-WDILKELPLPE-DVPQ 56
+ +K R + G ++EG+ ++++ KA L+ V+ S+ + L++ L + Q
Sbjct: 9 LHQKKYRNEYGCFLVEGEHLILELAKAAKHNPALQASTVYLSESYGELEQSALNGLSLKQ 68
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIF----ELPAHPIASIDPASLPLNIVCDNIRDPGNMGS 112
RV K +Q +D TP GI+ + E IAS + ++ L ++DPGN+G+
Sbjct: 69 VRVTDKQMQKMADTKTPQGIVAVVPFNDERTQQAIASDNERTVYLY----EVQDPGNLGT 124
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
ILR A G + V S VD Y+ KV+RA+
Sbjct: 125 ILRTLAWFGGFRCVLSPNSVDPYNPKVVRAS 155
>gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase SpoU [Geobacillus sp. C56-T3]
gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
Length = 251
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 21/146 (14%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHR 58
++K R++ G +LEG ++ +A+K+N L + + W++ VP
Sbjct: 20 TKKGRDETGLFLLEGFHLVEEAIKSNAPLVELIVDERTAVPPGWNV-------TGVPVTI 72
Query: 59 VDYKNIQLWSDLVTPPGIIGI-FELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
V ++ S TP GI + +LPA + + A ++ D ++DPGN+G+++R
Sbjct: 73 VTEAVMRAISSTETPQGIAAVCRKLPAE-LEGVKTA-----LLIDAVQDPGNLGTMIRTA 126
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G V+ GC D+Y+ KV+RA
Sbjct: 127 DAAGIDAVILGEGCADLYNPKVVRAT 152
>gi|431762344|ref|ZP_19550906.1| RNA methyltransferase [Enterococcus faecium E3548]
gi|430625036|gb|ELB61686.1| RNA methyltransferase [Enterococcus faecium E3548]
Length = 254
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 17 MLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQLWSDLVT 72
+LEG ++ +A ++ ++K +F +Q +KE L +++ V + + SDL T
Sbjct: 31 LLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAANKEISTFLVSDEVMDAVSDLPT 89
Query: 73 PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCV 132
P GI+ + L A L L DN++DPGN+G+++R A V+ +G
Sbjct: 90 PQGILAVMALTAEGTPEFSGGWLLL----DNVQDPGNVGTMIRTADAFDMAGVLLGKGTA 145
Query: 133 DIYDNKVIRA 142
DIY KV+R+
Sbjct: 146 DIYSTKVLRS 155
>gi|342218591|ref|ZP_08711201.1| RNA methyltransferase, TrmH family [Megasphaera sp. UPII 135-E]
gi|341589461|gb|EGS32736.1| RNA methyltransferase, TrmH family [Megasphaera sp. UPII 135-E]
Length = 272
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 15/151 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVF----------FSQWDILKELPLPED 53
+K +K R+++ +++EG R++ DAL+ ++ + F + + KEL
Sbjct: 18 LKQKKGRQQEQHVLVEGWRLITDALQQGIRQGICFIVDTEKTTDHMALYTRGKELQWQFF 77
Query: 54 VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIV-CDNIRDPGNMGS 112
V Y+ +Q+ S + GII + H +A + L +V +I+DPGN+G+
Sbjct: 78 RVSTSV-YQKLQMTS---SSQGIIAMLPFFNHTLAEAETLQLLQPVVYLQDIQDPGNVGT 133
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
I+R AA ++ S CVDIY++KV R+A
Sbjct: 134 IIRTAAACDVGAILLSPNCVDIYNDKVWRSA 164
>gi|387930067|ref|ZP_10132744.1| 23S rRNA methyltransferase [Bacillus methanolicus PB1]
gi|387586885|gb|EIJ79209.1| 23S rRNA methyltransferase [Bacillus methanolicus PB1]
Length = 250
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQ 65
++K+R+K G ++EG ++ +ALKA L ++ + + +P V +
Sbjct: 20 TKKERDKTGTFLVEGFHLVEEALKAGSVLNLIINEKPEWPSRFNYG-SIPVTMVTDEIFN 78
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
S+ TP G++ + I ++ D ++DPGN+G+++R A G V
Sbjct: 79 TLSETETPQGVLAVCRQAKIGQDQIKGKRF---LLIDAVQDPGNLGTMIRTADAAGVDTV 135
Query: 126 VCSRGCVDIYDNKVIRAA 143
+ G VDIY++KV+R+A
Sbjct: 136 IVGNGSVDIYNSKVLRSA 153
>gi|150395253|ref|YP_001325720.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
gi|150026768|gb|ABR58885.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
Length = 286
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ +K R++ + EG +++IDAL +++ + +++ K P E V
Sbjct: 33 LAQKKHRDETRSFIAEGLKLVIDALDLGWRIRTLVYAK--AAKGKPQVEQVAAKTVARGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P +IGIFE P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVISAITRRDNPQMVIGIFEQRYQPLKDIHPREGETYVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA +V D + + +RA
Sbjct: 151 RTADAAGASGIVLVGETTDPFSLETVRA 178
>gi|337747817|ref|YP_004641979.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus mucilaginosus
KNP414]
gi|379718935|ref|YP_005311066.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus mucilaginosus 3016]
gi|386721511|ref|YP_006187836.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus mucilaginosus K02]
gi|336299006|gb|AEI42109.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus mucilaginosus
KNP414]
gi|378567607|gb|AFC27917.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus mucilaginosus 3016]
gi|384088635|gb|AFH60071.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus mucilaginosus K02]
Length = 278
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 19/153 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS--QWDILKELPLPEDVPQH---- 57
++SRK REK G ++EG ++ +AL+++ V +S + D +EL L E Q
Sbjct: 29 LQSRKGREKTGRFVVEGHHLVQEALQSDAMPDTVVYSAERRDSCREL-LEEAERQGIECV 87
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASL-------PLNIVCDNIRDPGNM 110
V + + +D TP + + P S P L L V D ++DPGN+
Sbjct: 88 AVGEEVLAKCTDTGTPQPVFAVV-----PKLSWRPQDLLKASEQGGLVAVVDGMQDPGNL 142
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+I+R AVGA V+ +G VD+Y+ K +R+
Sbjct: 143 GTIIRSADAVGASGVLLGKGTVDLYNPKTVRST 175
>gi|323494049|ref|ZP_08099165.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
gi|323311676|gb|EGA64824.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
Length = 244
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ + L +K +F + + +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSELTVKQIFATGEFLAQHAQELSGFECIEASLDE 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P+ + P + L I D + DPGN+G+I+RV G +
Sbjct: 73 LTKASTLVSNNAAIAVVEIPSVEV----PKAQGLMIALDGVSDPGNLGTIIRVADWYGIK 128
Query: 124 QVVCSRGCVDIYDNKVIRA 142
+V S C D Y+ K I A
Sbjct: 129 HIVASTDCADPYNPKTISA 147
>gi|431926498|ref|YP_007239532.1| rRNA methylase [Pseudomonas stutzeri RCH2]
gi|431824785|gb|AGA85902.1| rRNA methylase [Pseudomonas stutzeri RCH2]
Length = 243
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-VPQHRVDYK 62
+ +K R + G ++EG+ + ++ KA L + S+ + + H + +
Sbjct: 9 LHQKKYRAEFGHFLVEGEHLALELQKAALHNPQLARSELYVTNAYEHWQSPFKTHLISDR 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ +D TP GI+ + +PA + P + I I+DPGN+G+ILR A G
Sbjct: 69 QMAQIADTKTPQGIVALVPMPATGASLAAPVAGERAIYLHEIQDPGNLGTILRTLAWFGN 128
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ + S G VD Y+ KV+R++
Sbjct: 129 FRCLLSPGSVDPYNPKVVRSS 149
>gi|294011050|ref|YP_003544510.1| RNA methyltransferase [Sphingobium japonicum UT26S]
gi|292674380|dbj|BAI95898.1| RNA methyltransferase [Sphingobium japonicum UT26S]
Length = 265
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF--SQWDILKELPLPEDVPQHRVDY 61
++ +K R+ +G + EG RIL +A + + +M+F S + EL + V
Sbjct: 19 LREKKFRKAEGLFLAEGLRILTEAREEGVLPEMLFHAGSTHPLAAELIAAMEAAGGDVIE 78
Query: 62 KNIQLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ + + P ++G++ P+A +D + IV ++RDPGN+G+ILR
Sbjct: 79 TTPDILAKISGKDNPQAVVGVYRDRLTPLAKLDRGKSDIWIVAQSLRDPGNLGTILRTGD 138
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA ++ CVD + + +RA+
Sbjct: 139 AVGAGGLILIDDCVDPFSVESVRAS 163
>gi|159901149|ref|YP_001547396.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus DSM
785]
gi|159894188|gb|ABX07268.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus DSM
785]
Length = 262
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE-----LPLPEDVPQHR 58
++SRK R + ++EG R++ +AL +++ + E L L +P
Sbjct: 21 LRSRKDRHSERRFVVEGVRLVGEALNFATPSLLLYVPEQLASTERGQQLLDLIAQLPNAF 80
Query: 59 VDYKNIQL-WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
I SD+ TP GII + +P S L ++ D ++DPGN+G++LR
Sbjct: 81 ATTPAILAGLSDVETPQGIIAVIPMP-----QFTSQSASLILMLDGVQDPGNVGTLLRSA 135
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G QV+C G D++ KV+R+
Sbjct: 136 EAAGVGQVLCLPGTADVWSPKVVRSG 161
>gi|379747671|ref|YP_005338492.1| TsnR protein [Mycobacterium intracellulare ATCC 13950]
gi|379762463|ref|YP_005348860.1| TsnR protein [Mycobacterium intracellulare MOTT-64]
gi|406031171|ref|YP_006730062.1| TsnR protein [Mycobacterium indicus pranii MTCC 9506]
gi|378800035|gb|AFC44171.1| TsnR protein [Mycobacterium intracellulare ATCC 13950]
gi|378810405|gb|AFC54539.1| TsnR protein [Mycobacterium intracellulare MOTT-64]
gi|405129718|gb|AFS14973.1| TsnR protein [Mycobacterium indicus pranii MTCC 9506]
Length = 268
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYKNIQLW 67
R + G + EG ++ A + L ++ VF ++ + L D P H V + +
Sbjct: 26 RRRAGRFLAEGPNLVEAASRRGL-VRDVFVTEVAEQRHASLLAGLDCPVHPVTERAAKAL 84
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + ++PA + + + L V I +PGN G+++R+ A+GA V+
Sbjct: 85 SDTVTPAGLVAVCDMPATRLDDVLAGAPQLLAVAVEIGEPGNAGTLIRLADAMGAAGVIL 144
Query: 128 SRGCVDIYDNKVIRAAA 144
VD Y+ K +RA+A
Sbjct: 145 GGHSVDPYNGKCLRASA 161
>gi|423100294|ref|ZP_17088001.1| RNA methyltransferase, TrmH family [Listeria innocua ATCC 33091]
gi|370793295|gb|EHN61133.1| RNA methyltransferase, TrmH family [Listeria innocua ATCC 33091]
Length = 252
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKAN-LKLKMVFFSQWDILKELPLPEDVPQHRVDYK 62
+++RK R+K G ++EG ++ +AL+ + L L+++ S + +E L D + +
Sbjct: 18 LQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELLISSGVSVPEEW-LKGDYDVFEISSE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
L SD +T G+ + + + + L ++ D ++DPGN+G+++R A G
Sbjct: 77 ISHLISDTMTEQGVFAVVAISEPDMMLLYGKKL---LLVDAVQDPGNVGTLIRTADAAGY 133
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
VV RG D+Y+ KVIR+
Sbjct: 134 DCVVLGRGSADLYNPKVIRST 154
>gi|379754973|ref|YP_005343645.1| TsnR protein [Mycobacterium intracellulare MOTT-02]
gi|378805189|gb|AFC49324.1| TsnR protein [Mycobacterium intracellulare MOTT-02]
Length = 268
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYKNIQLW 67
R + G + EG ++ A + L ++ VF ++ + L D P H V + +
Sbjct: 26 RRRAGRFLAEGPNLVEAASRRGL-VRDVFVTEVAEQRHASLLAGLDCPVHPVTERAAKAL 84
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + ++PA + + + L V I +PGN G+++R+ A+GA V+
Sbjct: 85 SDTVTPAGLVAVCDMPATRLDDVLAGAPQLLAVAVEIGEPGNAGTLIRLADAMGAAGVIL 144
Query: 128 SRGCVDIYDNKVIRAAA 144
VD Y+ K +RA+A
Sbjct: 145 GGHSVDPYNGKCLRASA 161
>gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 263
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-QWDILKELPLPE----DVPQHRVDY 61
+K R+K+G ++EG ++ +AL++ ++ V + + I EL DV V
Sbjct: 20 KKNRDKQGKYLIEGIHLVQEALQSRADVECVCYDLEHGIPVELQAAASAGLDVDWIGVSA 79
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
I SD +P + + +A + L +V D ++DPGN+G+I+R AV
Sbjct: 80 AVIAKCSDTKSPQPVFAVVRKDRGTVAPLLAKERSLVVVLDGVQDPGNVGTIIRSADAVA 139
Query: 122 ARQVVCSRGCVDIYDNKVIRA 142
A V+ GC DIY KV+RA
Sbjct: 140 ADGVIVGAGCADIYGPKVLRA 160
>gi|424915794|ref|ZP_18339158.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392851970|gb|EJB04491.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 286
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ ++K RE+ G + EG +++IDA++ ++ + +++ K PL E +
Sbjct: 33 LTNKKSREESGTFLAEGLKLVIDAIELGWTIRTLVYAK--AAKGKPLVEQMAAKTVASGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIFE P+ I P + D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVIASITRRDNPQMVVGIFEQRWMPLRDIRPRDGETWVALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA ++ D + + +RA
Sbjct: 151 RTADAAGASGIILIGETTDPFSLETVRA 178
>gi|387876331|ref|YP_006306635.1| TsnR protein [Mycobacterium sp. MOTT36Y]
gi|386789789|gb|AFJ35908.1| TsnR protein [Mycobacterium sp. MOTT36Y]
Length = 268
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYKNIQLW 67
R + G + EG ++ A + L ++ VF ++ + L D P H V + +
Sbjct: 26 RRRAGRFLAEGPNLVEAASRRGL-VRDVFVTEVAQQRHASLLAGLDCPVHPVTERAAKAL 84
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + ++PA + + + L V I +PGN G+++R+ A+GA V+
Sbjct: 85 SDTVTPAGLVAVCDMPATRLDDVLAGAPQLVAVAVEIGEPGNAGTLIRLADAMGAAGVIL 144
Query: 128 SRGCVDIYDNKVIRAAA 144
VD Y+ K +RA+A
Sbjct: 145 GGRSVDPYNGKCLRASA 161
>gi|321496398|gb|EAQ38693.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
Length = 283
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 81/143 (56%), Gaps = 9/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R+++G + EG +++ + L ++L+L + + P+D Q +V+
Sbjct: 50 LGQKKYRQREGVFVAEGIKVVNELLLSSLELVELHTEDVSAFAKALSPQD--QSKVNETT 107
Query: 64 ---IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ + L T + F++P IA ID + L +V D++RDPGN+G+I+R+C
Sbjct: 108 PAELKKLTFLKTAQKAVATFKMP-EAIA-IDRSGL--TVVLDDVRDPGNLGTIIRLCDWF 163
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G +Q+VCS+ VD Y+ KV++A
Sbjct: 164 GIKQLVCSKATVDCYNPKVVQAT 186
>gi|340351064|ref|ZP_08674032.1| TrmH family RNA methyltransferase [Prevotella nigrescens ATCC
33563]
gi|339606682|gb|EGQ11649.1| TrmH family RNA methyltransferase [Prevotella nigrescens ATCC
33563]
Length = 251
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 33/153 (21%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K R K G + EG +I+ D L A +L +F + DI K L QH
Sbjct: 18 LETKKGRVKHGMFVAEGPKIVGDLLAAGFRLAELFDDEDDIKKVSFL-----QH------ 66
Query: 64 IQLWSDLVTPPGIIGIFELP-----AHPI--ASIDPASLP------LNIVCDNIRDPGNM 110
P G +G+F LP AH ++D +P L + D ++DPGN+
Sbjct: 67 ---------PQGKVGVFRLPDYVETAHDERETAVDEKCMPMLGEHELALALDGVQDPGNL 117
Query: 111 GSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G+I+RV G +++ CS D ++ KV++A
Sbjct: 118 GTIIRVADWFGIKRIFCSMDTADCWNPKVVQAT 150
>gi|428219231|ref|YP_007103696.1| tRNA/rRNA methyltransferase SpoU [Pseudanabaena sp. PCC 7367]
gi|427991013|gb|AFY71268.1| tRNA/rRNA methyltransferase (SpoU) [Pseudanabaena sp. PCC 7367]
Length = 264
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-WD----ILKELPLPEDVPQHRV 59
KS K R ++G ++EG L +A+ N V +++ W +L L V
Sbjct: 18 KSTKARREQGLFLIEGTHALSEAIATNFPCATVCYTEVWQQKNPVLYGEVLERAEQLEPV 77
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
I+ + + P G+I LP ++ D + +V + I+DPGN+G+I+R A
Sbjct: 78 SEAVIKAIATTMNPDGVIATLPLPD---SARDSGINSIGLVLETIQDPGNLGAIIRTAVA 134
Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
G ++ S+ VD+ KVIRA+A
Sbjct: 135 AGIDEIWVSQDSVDLTSPKVIRASA 159
>gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68]
gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0082]
gi|383329257|ref|YP_005355141.1| RNA methyltransferase [Enterococcus faecium Aus0004]
gi|424791877|ref|ZP_18218178.1| RNA methyltransferase, TrmH family [Enterococcus faecium V689]
gi|424847654|ref|ZP_18272208.1| RNA methyltransferase, TrmH family [Enterococcus faecium R501]
gi|424954540|ref|ZP_18369435.1| RNA methyltransferase, TrmH family [Enterococcus faecium R494]
gi|424985305|ref|ZP_18397788.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV69]
gi|424987656|ref|ZP_18400023.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV38]
gi|424991501|ref|ZP_18403648.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV26]
gi|425008965|ref|ZP_18420011.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV1]
gi|425014831|ref|ZP_18425485.1| RNA methyltransferase, TrmH family [Enterococcus faecium E417]
gi|425040429|ref|ZP_18444902.1| RNA methyltransferase, TrmH family [Enterococcus faecium 513]
gi|431752242|ref|ZP_19540925.1| RNA methyltransferase [Enterococcus faecium E2620]
gi|431757086|ref|ZP_19545717.1| RNA methyltransferase [Enterococcus faecium E3083]
gi|431780946|ref|ZP_19569104.1| RNA methyltransferase [Enterococcus faecium E4389]
gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68]
gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0082]
gi|378938951|gb|AFC64023.1| RNA methyltransferase [Enterococcus faecium Aus0004]
gi|402918391|gb|EJX39088.1| RNA methyltransferase, TrmH family [Enterococcus faecium V689]
gi|402919002|gb|EJX39644.1| RNA methyltransferase, TrmH family [Enterococcus faecium R501]
gi|402936533|gb|EJX55704.1| RNA methyltransferase, TrmH family [Enterococcus faecium R494]
gi|402966221|gb|EJX82875.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV69]
gi|402973892|gb|EJX89977.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV38]
gi|402976653|gb|EJX92527.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV26]
gi|402991029|gb|EJY05861.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV1]
gi|402997598|gb|EJY11914.1| RNA methyltransferase, TrmH family [Enterococcus faecium E417]
gi|403012880|gb|EJY26047.1| RNA methyltransferase, TrmH family [Enterococcus faecium 513]
gi|430613733|gb|ELB50732.1| RNA methyltransferase [Enterococcus faecium E2620]
gi|430619375|gb|ELB56202.1| RNA methyltransferase [Enterococcus faecium E3083]
gi|430638468|gb|ELB74403.1| RNA methyltransferase [Enterococcus faecium E4389]
Length = 254
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 17 MLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQLWSDLVT 72
+LEG ++ +A ++ ++K +F +Q +KE L +++ V + + SDL T
Sbjct: 31 LLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAANKEISTFLVSDEVMDAVSDLPT 89
Query: 73 PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCV 132
P GI+ + L A L L DN++DPGN+G+++R A V+ +G
Sbjct: 90 PQGILAVMALTAEGTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFDMAGVLLGKGTA 145
Query: 133 DIYDNKVIRA 142
DIY KV+R+
Sbjct: 146 DIYSTKVLRS 155
>gi|16800250|ref|NP_470518.1| hypothetical protein lin1181 [Listeria innocua Clip11262]
gi|422412668|ref|ZP_16489627.1| rRNA methyltransferase [Listeria innocua FSL S4-378]
gi|16413640|emb|CAC96412.1| lin1181 [Listeria innocua Clip11262]
gi|313619318|gb|EFR91052.1| rRNA methyltransferase [Listeria innocua FSL S4-378]
Length = 252
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKAN-LKLKMVFFSQWDILKELPLPEDVPQHRVDYK 62
+++RK R+K G ++EG ++ +AL+ + L L+++ S + +E L D + +
Sbjct: 18 LQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELLISSGVSVPEEW-LKGDYDVFEISSE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
L SD +T G+ + + + + L ++ D ++DPGN+G+++R A G
Sbjct: 77 ISHLISDTMTEQGVFAVVAISEPDMMLLYGKKL---LLVDAVQDPGNVGTLIRTADAAGY 133
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
VV RG D+Y+ KVIR+
Sbjct: 134 DCVVLGRGSADLYNPKVIRST 154
>gi|103487534|ref|YP_617095.1| tRNA/rRNA methyltransferase SpoU [Sphingopyxis alaskensis RB2256]
gi|98977611|gb|ABF53762.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
Length = 270
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF----SQWDILKELPLPEDVPQ 56
M ++ ++ R +G + EG RI +A +A + +F + + + L
Sbjct: 19 MRLLREKRHRRAEGLFLAEGLRIATEAREAGVFPAWLFLGPDGAAHPLAQALVADTMAAG 78
Query: 57 HRVDYKNIQLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
V + S L P I+GI+ PA +A+ID + P+ +V + +RDPGN+G++
Sbjct: 79 GEVIDTTAAILSKLSGKDNPQTIVGIYAEPATTLAAIDRNAAPIWLVAERLRDPGNLGTM 138
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR AVGA ++ D Y + +RA+
Sbjct: 139 LRTGDAVGAGGLILLGDSTDPYGVEAVRAS 168
>gi|451941319|ref|YP_007461956.1| tRNA/rRNA methyltransferase [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451900706|gb|AGF75168.1| tRNA/rRNA methyltransferase [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 284
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
+ +K R ++G M+EG +++IDAL ++ + FS+ + E V
Sbjct: 26 LSQKKNRNREGLFMVEGLKLVIDALNLGWTIQTLIFSKSKMGNAAIENTAARTVANGGFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K + + +T P +IGIF+ + +I + + D +RDPGN+G+I+R
Sbjct: 86 IKASEKVMESITRRDNPQTVIGIFKQQWRSLETIKGRITDVYVALDRVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 146 ADAVGAKGVILIGETTDPFSPETVRAT 172
>gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 257
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDYK 62
K K R ++ ++EG ++ +A + +++ VF S+ +D K+ + + + K
Sbjct: 18 KKSKVRNERNIFLVEGIKMFFEAPRN--RIEKVFISETLFDRKKQELNLDGLKVEILSDK 75
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
SD TP GI+ I + I ++ DN++DPGN+G+I+R G
Sbjct: 76 VFSHVSDTKTPQGILCIMRQKKTKLEEIFAQKPEHLMILDNLQDPGNLGTIVRTAEGAGV 135
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
++ S+ CVDIY+ K IR+
Sbjct: 136 SGIILSKDCVDIYNPKTIRST 156
>gi|420157142|ref|ZP_14663982.1| RNA methyltransferase, TrmH family [Clostridium sp. MSTE9]
gi|394757152|gb|EJF40211.1| RNA methyltransferase, TrmH family [Clostridium sp. MSTE9]
Length = 270
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
R ++ + EG R+ DA + L + VF+++ + E P+ +++
Sbjct: 28 RREQNTFLAEGARLCADAADSGLLIHSVFYTERAGEKYASYLERIFPKAEQMYQIADSVA 87
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
+L SD P G+ ELP A+ + + + I+DP N+G++LR A+G
Sbjct: 88 ELLSDTRQPQGVYCTAELPKR-TAAAELGQSGCYLALEEIQDPSNLGAVLRTAEALGVSG 146
Query: 125 VVCSRGCVDIYDNKVIRA 142
VV + C D Y K +RA
Sbjct: 147 VVLAGSCCDPYGAKALRA 164
>gi|336125489|ref|YP_004577445.1| 23S rRNA methyltransferase [Vibrio anguillarum 775]
gi|335343206|gb|AEH34488.1| 23S rRNA methyltransferase [Vibrio anguillarum 775]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 24/149 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYK- 62
+ +KQR+ G +++G++ +++ + + L +K VF + E + Q+RV+
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELINSQLTVKQVFAT----------AEFIAQNRVELSV 62
Query: 63 ---------NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
++ S LV+ I + E+P + P + L I D + DPGN+G+I
Sbjct: 63 FECIEATLDDLTKASTLVSNNAAIAVVEIPEVTV----PEAKGLMIALDGVSDPGNLGTI 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+RV + +V S C D Y+ K I A
Sbjct: 119 IRVADWYSIKYIVASHDCADPYNPKTISA 147
>gi|254821223|ref|ZP_05226224.1| TsnR protein [Mycobacterium intracellulare ATCC 13950]
Length = 268
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHRVDYKNIQLW 67
R + G + EG ++ A + L ++ VF ++ + L D P H V + +
Sbjct: 26 RRRAGRFLAEGPNLVEAASRRGL-VRDVFVTEVAEQRHASLLAGLDCPVHPVTERAAKAL 84
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
SD VTP G++ + ++PA + + + L V I +PGN G+++R+ A+GA V+
Sbjct: 85 SDTVTPAGLVAVCDMPATHLDDVLAGAPQLLAVAVEIGEPGNAGTLIRLADAMGAAGVIL 144
Query: 128 SRGCVDIYDNKVIRAAA 144
VD Y+ K +RA+A
Sbjct: 145 GGRSVDPYNGKCLRASA 161
>gi|206890340|ref|YP_002248180.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742278|gb|ACI21335.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 261
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 42 WDILKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIV- 100
+IL+E +P + +V + SD VTP G+ I + I +I+ S P IV
Sbjct: 62 LEILQEKKIPVIIISEKVA----KTISDTVTPQGVFAIADFK---IKNINDLSNPTFIVI 114
Query: 101 CDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
D I+DPGN+G+I+R A GA V+ + G + + NK +RA+A
Sbjct: 115 ADRIQDPGNIGTIIRAAEAFGAEAVLVTHGTCNPFSNKALRASA 158
>gi|430822804|ref|ZP_19441379.1| RNA methyltransferase [Enterococcus faecium E0120]
gi|430865483|ref|ZP_19481118.1| RNA methyltransferase [Enterococcus faecium E1574]
gi|431739634|ref|ZP_19528554.1| RNA methyltransferase [Enterococcus faecium E2039]
gi|430442733|gb|ELA52754.1| RNA methyltransferase [Enterococcus faecium E0120]
gi|430552830|gb|ELA92547.1| RNA methyltransferase [Enterococcus faecium E1574]
gi|430604250|gb|ELB41741.1| RNA methyltransferase [Enterococcus faecium E2039]
Length = 254
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 17 MLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQLWSDLVT 72
+LEG ++ +A ++ ++K +F +Q +KE L +++ V + + SDL T
Sbjct: 31 LLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAANKEISTFLVSDEVMDAVSDLPT 89
Query: 73 PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCV 132
P GI+ + L A L L DN++DPGN+G+++R A V+ +G
Sbjct: 90 PQGILAVMALTAEGTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFDMAGVLLGKGTA 145
Query: 133 DIYDNKVIRA 142
DIY KV+R+
Sbjct: 146 DIYSTKVLRS 155
>gi|425061762|ref|ZP_18464967.1| RNA methyltransferase, TrmH family, partial [Enterococcus faecium
503]
gi|403040582|gb|EJY51649.1| RNA methyltransferase, TrmH family, partial [Enterococcus faecium
503]
Length = 268
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 17 MLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQLWSDLVT 72
+LEG ++ +A ++ ++K +F +Q +KE L +++ V + + SDL T
Sbjct: 45 LLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAANKEISTFLVSDEVMDAVSDLPT 103
Query: 73 PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCV 132
P GI+ + L A L L DN++DPGN+G+++R A V+ +G
Sbjct: 104 PQGILAVMALTAEGTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFDMAGVLLGKGTA 159
Query: 133 DIYDNKVIRA 142
DIY KV+R+
Sbjct: 160 DIYSTKVLRS 169
>gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
Length = 259
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVP--QHRVDYKNIQLW 67
R +G + EG++ L L +L+ +F ++ L++ P ++P + V+
Sbjct: 25 RRAEGRFLAEGRK-LCPELCRGAELETLFCTE-SALEKCPELSELPGEHYLVEDHVADKL 82
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
+D+ T G+ G+F P H + + L + + ++DPGN+G++LR AA G V+
Sbjct: 83 ADVGTHQGVFGVFRTPVHTLEEVKTGGRYLAL--ERVQDPGNVGTLLRSAAAFGFDGVLL 140
Query: 128 SRGCVDIYDNKVIRAA 143
S GC ++ K +RA+
Sbjct: 141 SDGCASVFAPKTLRAS 156
>gi|217967693|ref|YP_002353199.1| tRNA/rRNA methyltransferase SpoU [Dictyoglomus turgidum DSM 6724]
gi|217336792|gb|ACK42585.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
Length = 269
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 72 TPPGIIGIFELPAHPIASI-DPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRG 130
TPPGI+G+F L P + + + + + D+I+DPGN+G+I+R+ VG V+ S
Sbjct: 90 TPPGIMGVFPLFLFPKWELLEEKNNKIVLFSDDIQDPGNLGTIIRIADGVGVDAVILSEN 149
Query: 131 CVDIYDNKVIRAAA 144
VD Y+ KVIR +
Sbjct: 150 TVDPYNYKVIRGST 163
>gi|399035059|ref|ZP_10732583.1| rRNA methylase [Rhizobium sp. CF122]
gi|398067157|gb|EJL58700.1| rRNA methylase [Rhizobium sp. CF122]
Length = 286
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH------ 57
+ +K RE+ G M EG +++IDA+ ++ + +++ K PL E +
Sbjct: 33 LSDKKTREQSGTFMAEGLKLVIDAIDLGWTIRTLVYAK--AAKGKPLVEQMAAKTVASGG 90
Query: 58 ---RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
V K I + P ++GIFE + I P I D +RDPGN+G+I+
Sbjct: 91 LVLEVSEKVISSITRRDNPQMVVGIFESRWKALREIHPKRDETWIALDRVRDPGNLGTII 150
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA V+ D + + +RA
Sbjct: 151 RTADAAGASGVILVGETTDPFSLETVRA 178
>gi|34540534|ref|NP_905013.1| RNA methyltransferase [Porphyromonas gingivalis W83]
gi|334147649|ref|YP_004510578.1| RNA methyltransferase [Porphyromonas gingivalis TDC60]
gi|419969825|ref|ZP_14485346.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W50]
gi|34396847|gb|AAQ65912.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
gi|333804805|dbj|BAK26012.1| RNA methyltransferase [Porphyromonas gingivalis TDC60]
gi|392611980|gb|EIW94700.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W50]
Length = 254
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 15/145 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-----VPQHR 58
++ RK R ++ +EG + L+ + + +M+ + +L+ + P D +P+
Sbjct: 13 LRERKYRLREQAFAVEGPK-LVGEMLPFYRCRMLVGTA-AMLRAVSTPHDAEVVELPES- 69
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
D+K I S TP ++ +F+LPA P +P L ++ D ++DPGN+G+ILR
Sbjct: 70 FDFKRI---STQTTPQPLMAVFDLPAEP----EPVVEGLTLLLDGVQDPGNVGTILRTAD 122
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
G R V G D++ KV++A+
Sbjct: 123 WFGIRHVWLGTGSADVFSPKVVQAS 147
>gi|147678286|ref|YP_001212501.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
gi|146274383|dbj|BAF60132.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
Length = 270
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 8/148 (5%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF-------SQWDILKELPLPEDVPQ 56
+ SR+ REK+G ++EG R + +AL + ++M+ + + + L E + VP
Sbjct: 15 LGSRRFREKEGKFLIEGVRFVEEALNSAWPVEMLVYCRRITETRRGEALLEKASFQGVPL 74
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLP-LNIVCDNIRDPGNMGSILR 115
VD + TP G + + + + + P L ++ D ++DPGN+G+I+R
Sbjct: 75 VEVDESLFGELAGTTTPQGALAVVKKGKVSLEDLQAGGEPALLVIVDGVQDPGNLGTIVR 134
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ +G DI++ K +RA
Sbjct: 135 SAGAAGAGGVILLKGTADIFNAKALRAT 162
>gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
gi|156867100|gb|EDO60472.1| RNA methyltransferase, TrmH family [Clostridium leptum DSM 753]
Length = 270
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+KS K R ++ + EG R+ DA + +++ +F+++ + + P+DV R +
Sbjct: 20 LKSAKFRRQEEAFLAEGVRLCRDAAYSGVRILRMFYTEEALER---YPKDVELLREKAER 76
Query: 64 IQLWSD--------LVTPPGIIGIFEL--PAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
L S VTP GI + + + +D + L + ++I+DP N+G++
Sbjct: 77 AFLLSQQLAGGLSATVTPQGIFCVCAMLDKTDCLDKMDASGQLLGL--EDIQDPSNLGTV 134
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A+G V+ +RGC DIY KV+R +
Sbjct: 135 LRTAEALGIGGVILTRGCCDIYSPKVLRGS 164
>gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
Length = 261
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 13/149 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKL-KMVFFSQWDILKELPLPEDVPQ--HRVD 60
+ K R ++G L+LEG ++ A +AN L + + QW + L E+V + R++
Sbjct: 16 LHRTKGRREEGLLLLEGTHLVETAYEANCSLMTLCYTEQWRT-RYPQLWENVSKKVQRLE 74
Query: 61 YKNIQLWSDLVT---PPGIIG--IFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
++++ + + T P G++ +FE P + L +V + ++DPGN+G+I+R
Sbjct: 75 LVSLEVLTAMTTTINPDGVVATALFE----PFTEGEITDFRLGLVIERLQDPGNLGTIIR 130
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
AA G + S VD+ KV+RA+A
Sbjct: 131 TAAATGIDGIWLSDDSVDVDHPKVLRASA 159
>gi|118444322|ref|YP_877839.1| rRNA methylase [Clostridium novyi NT]
gi|118134778|gb|ABK61822.1| rRNA methylase [Clostridium novyi NT]
Length = 262
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 79/148 (53%), Gaps = 14/148 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ--------WDILKELPLPEDVP 55
++ +K R ++ ++EG R + +ALK+ ++ + ++ ++IL + E+
Sbjct: 18 LRKKKYRVQEEKFLVEGFRFVEEALKSTFQVSHMLIAESAIEKCNSFNILN--SVDENTK 75
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
V + ++ + P GII + + + SI+ + I+ D ++DPGNMG+I+R
Sbjct: 76 VSLVKDEILKELCETNNPQGIIAVVD---NKKISIEDKN-GFYILIDKVQDPGNMGTIIR 131
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA V+ ++G VDIY++K +R+
Sbjct: 132 SANASGALGVIVTKGTVDIYNDKTLRST 159
>gi|407983843|ref|ZP_11164482.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Mycobacterium hassiacum DSM 44199]
gi|407374582|gb|EKF23559.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Mycobacterium hassiacum DSM 44199]
Length = 254
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKM-VFFSQWDILKELPLPEDVPQHRVDYKNIQLWS 68
R + + EG ++ AL+ L ++ V + + L + P V + + S
Sbjct: 13 RRRAARFLAEGPNLVEAALRRGLVCEVFVTAAARERFAALLNGVEAPVFEVTERAARALS 72
Query: 69 DLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCS 128
D VTP G++ + +P H + + L V I +PGN G+++R A+GA VV +
Sbjct: 73 DTVTPVGLVAVCRMPQHGLDDVLATGPRLVAVAVEISEPGNAGTLIRTADAMGAGAVVLA 132
Query: 129 RGCVDIYDNKVIRAAA 144
CVD Y+ K +RA+A
Sbjct: 133 GHCVDPYNGKCLRASA 148
>gi|319779560|ref|YP_004130473.1| TrmH family RNA methyltransferase [Taylorella equigenitalis MCE9]
gi|397661791|ref|YP_006502491.1| putative RNA methyltransferase [Taylorella equigenitalis ATCC
35865]
gi|317109584|gb|ADU92330.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
gi|394349970|gb|AFN35884.1| putative RNA methyltransferase [Taylorella equigenitalis ATCC
35865]
Length = 259
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
S++VT GI+ + ++P + I ++ + ++ D+I+DPGN+G++LR C AVG V
Sbjct: 82 SEVVTNQGILLLIDIPTYNINNLSMQNTI--VLLDSIQDPGNLGTLLRTCVAVGISDVAL 139
Query: 128 SRGCVDIYDNKVIRAA 143
++GC + +KV+R+A
Sbjct: 140 NKGCSSAWSSKVLRSA 155
>gi|295690068|ref|YP_003593761.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
gi|295431971|gb|ADG11143.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
Length = 263
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFF----SQWDILKELP---LPEDVPQHRV 59
RK+RE+ G + EG +I+I+A+ K+V + + +LK+ L V
Sbjct: 23 RKEREESGLFLAEGLKIVIEAIDCGHAPKIVMYGPDAADHPMLKKAVAACLKAGGEVIEV 82
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ + ++ S P ++ +F P+ +I P S P + +RDPGN+G+++R A
Sbjct: 83 NREILEKVSRRDNPQAVVAVFRQVFTPLTAIVPESAPCWVAMQAVRDPGNLGTVIRTADA 142
Query: 120 VGARQVVCSRGCVDIYDNKVIRA 142
G V+ CVD Y + +RA
Sbjct: 143 AGCGGVILVGDCVDPYSVEGVRA 165
>gi|163867316|ref|YP_001608510.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
105476]
gi|161016957|emb|CAK00515.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
tribocorum CIP 105476]
Length = 284
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
+ +K R ++G M EG +++IDAL ++ + FS+ +I E V
Sbjct: 26 LSQKKNRNREGLFMAEGLKLVIDALNLGWTIQTLIFSKSEIGNATIENTAARAVANGGFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K Q + +T P +IGIF+ + I + + I D +RDPGN+G+I+R
Sbjct: 86 IKASQKVMESLTRRDNPQTVIGIFKQKWQSLEMITGQAKDVYIALDRVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AV A+ V+ D + + +RA
Sbjct: 146 ADAVSAKGVILIGETTDPFSPETVRAT 172
>gi|390630619|ref|ZP_10258598.1| TrmH family RNA methyltransferase [Weissella confusa LBAE C39-2]
gi|390484176|emb|CCF30946.1| TrmH family RNA methyltransferase [Weissella confusa LBAE C39-2]
Length = 256
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELP-LPEDVPQHRVDYK 62
++++K R+ +L+G ++ +A++ + KL + + + + LP VP +
Sbjct: 18 LQTKKGRQASKTYLLDGWHLVQEAIQHDGKLHAIMATPEQLAEHQDDLPLGVPVFEITAD 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ SDLVTP GI LP A+ +P + + D I+DPGN+G+++R A
Sbjct: 78 IAKKLSDLVTPQGIFAEVSLP---TATREPQFIHDGAWLFLDAIQDPGNVGTMIRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G VV G VD Y K +RA
Sbjct: 135 GFAGVVFGDGSVDPYSPKALRA 156
>gi|332638057|ref|ZP_08416920.1| rRNA methylase [Weissella cibaria KACC 11862]
Length = 256
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK-ELPLPEDVPQHRVDYK 62
++++K R+ +L+G ++ +A++ KL + + + + + LP VP +
Sbjct: 18 LQTKKGRQASKTYLLDGWHLVQEAIQHEGKLHAIMATPEQLAEHQEALPLGVPVFEITTD 77
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN--IVCDNIRDPGNMGSILRVCAAV 120
+ SDLVTP G+ LP A+ +P + + D I+DPGN+G+++R A
Sbjct: 78 IAKKLSDLVTPQGVFAEVSLP---TATREPRFIHDGAWLFLDAIQDPGNIGTMVRTADAA 134
Query: 121 GARQVVCSRGCVDIYDNKVIRA 142
G VV G VD Y K +RA
Sbjct: 135 GFAGVVFGNGSVDPYSPKALRA 156
>gi|403507539|ref|YP_006639177.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Nocardiopsis alba ATCC BAA-2165]
gi|402801724|gb|AFR09134.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Nocardiopsis alba ATCC BAA-2165]
Length = 243
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 54 VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
VP HRV + + +TP G+I + E P+ + + L +V ++RDPGN G++
Sbjct: 49 VPTHRVSLDVMSELAQTITPQGVIAVCEFVDVPLEKV--TDVRLAVVLSHVRDPGNAGTV 106
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
LR A GA V+ + VD Y+ K +RA+A
Sbjct: 107 LRTADAAGADVVIFTDASVDPYNGKCVRASA 137
>gi|359405722|ref|ZP_09198466.1| RNA methyltransferase, TrmH family [Prevotella stercorea DSM 18206]
gi|357557908|gb|EHJ39430.1| RNA methyltransferase, TrmH family [Prevotella stercorea DSM 18206]
Length = 256
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKA---NLKLKMVFFSQW--DILKELPLPEDVPQHR 58
+ ++K R+ +G + EG +++ D + NL L +V S+W K++ +
Sbjct: 13 LNTKKSRDVEGVFVAEGPKVVGDIFASHPSNLTL-LVATSEWLNGDGKKVSASANCEIIE 71
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V + + S L P ++G+F+ P+ + S L I D ++DPGN+G+I+R+
Sbjct: 72 VTTEELAKASFLCHPQQVLGVFKKLKTPVDTTMLTS-KLTIALDGVQDPGNLGTIIRIAD 130
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
G ++CS D+Y+ KV++A
Sbjct: 131 WFGIENIICSHDTADVYNPKVVQAT 155
>gi|422415702|ref|ZP_16492659.1| rRNA methyltransferase [Listeria innocua FSL J1-023]
gi|313624066|gb|EFR94149.1| rRNA methyltransferase [Listeria innocua FSL J1-023]
Length = 252
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKAN-LKLKMVFFSQWDILKELPLPEDVPQHRVDYK 62
+++RK R+K G ++EG ++ +AL+ + L L+++ S + +E L D + +
Sbjct: 18 LQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELLVSSGVSVPEEW-LKGDYDVFEISSE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
L SD +T G+ + + + + L ++ D ++DPGN+G+++R A G
Sbjct: 77 ISHLISDTMTEQGVFAVVAISEPDMMLLYGKKL---LLVDAVQDPGNVGTLIRTADAAGY 133
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
VV RG D+Y+ KVIR+
Sbjct: 134 DCVVLGRGSADLYNPKVIRST 154
>gi|16125439|ref|NP_420003.1| spoU rRNA methylase [Caulobacter crescentus CB15]
gi|221234182|ref|YP_002516618.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
gi|13422511|gb|AAK23171.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
gi|220963354|gb|ACL94710.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
Length = 263
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFF----SQWDILKELP---LPEDVPQHRV 59
RK+RE G + EG +I+I+A+ K+V + + +LK+ L V
Sbjct: 23 RKEREDSGLFLAEGLKIVIEAIDCGHAPKIVMYGPDAADHPMLKKAVAACLKAGGEVIEV 82
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ + ++ S P ++ +F+ P+++I P S P + +RDPGN+G+++R A
Sbjct: 83 NREILEKVSRRDNPQAVVAVFKQVFTPLSAIVPESAPCWVAMQAVRDPGNLGTVIRTADA 142
Query: 120 VGARQVVCSRGCVDIYDNKVIRA 142
G V+ CVD Y + +RA
Sbjct: 143 AGCGGVILVGDCVDPYSVEGVRA 165
>gi|163757828|ref|ZP_02164917.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
DFL-43]
gi|162285330|gb|EDQ35612.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
DFL-43]
Length = 287
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-------QWDILKELPLPEDVPQHRV 59
+K R++ G + EG +++IDA+ ++ + ++ Q + + L + V
Sbjct: 36 KKHRDETGSFLAEGLKLVIDAIDQGWNIRTLIYAKAQRGKPQVEKIAALTVARGGLVLEV 95
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
K + + P +I +FE P+ ++ P I D +RDPGN+G+I+R A
Sbjct: 96 SEKVLTAITRRDNPQAVIAVFEQKLTPLDAVAPKPDETWIALDRVRDPGNLGTIIRTADA 155
Query: 120 VGARQVVCSRGCVDIYDNKVIRA 142
GA V+ VD + + +RA
Sbjct: 156 AGASGVILIGDTVDPFSTETVRA 178
>gi|300774979|ref|ZP_07084842.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
gi|300506794|gb|EFK37929.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
Length = 255
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R+K ++EG++ AL+ + + + FF I K VP ++ Y + +++
Sbjct: 24 RKKSKVFVVEGQQENERALQYDFE-PLEFFICESIFKGA-----VPDGKIHYVSEKVYEK 77
Query: 70 LV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
+ + GIIG++ P++S P I+ + + PGN+G+ILR C A G ++
Sbjct: 78 IAYRGSSEGIIGVYHTKEIPLSSFTPQKDSTVIIVEGVEKPGNLGAILRSCEAFGIDALI 137
Query: 127 CSRGCVDIYDNKVIRAA 143
+ G D Y+ VIR++
Sbjct: 138 VADGKTDFYNPNVIRSS 154
>gi|399115156|emb|CCG17955.1| putative RNA methyltransferase [Taylorella equigenitalis 14/56]
Length = 259
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
S++VT GI+ + ++P + I ++ + ++ D+I+DPGN+G++LR C AVG V
Sbjct: 82 SEVVTNQGILLLIDIPTYNINNLSMQNTI--VLLDSIQDPGNLGTLLRTCVAVGISDVAL 139
Query: 128 SRGCVDIYDNKVIRAA 143
++GC + +KV+R+A
Sbjct: 140 NKGCSSAWSSKVLRSA 155
>gi|262375582|ref|ZP_06068815.1| rRNA methylase [Acinetobacter lwoffii SH145]
gi|262309836|gb|EEY90966.1| rRNA methylase [Acinetobacter lwoffii SH145]
gi|407008408|gb|EKE23790.1| hypothetical protein ACD_6C00331G0011 [uncultured bacterium]
Length = 258
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI----- 64
R+K+G +LEG + + L N K+ +F ++ L P D + Y +
Sbjct: 27 RKKQGQTVLEGTHLSLAWLHENRKIDSIFTTE----HALSHP-DFEKILAKYTGMVFVLS 81
Query: 65 -QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
L+ DL T + + P A+ ++ +N++DPGN+G++LR AA G
Sbjct: 82 ESLYKDLSTLGTSLACLAVVTLPTANYALDFKADTLILENVQDPGNVGTLLRSAAAAGIE 141
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
Q+VC++G ++ +V+RA
Sbjct: 142 QIVCTKGSASLWSPRVLRAG 161
>gi|379730806|ref|YP_005323002.1| tRNA/rRNA methyltransferase SpoU [Saprospira grandis str. Lewin]
gi|378576417|gb|AFC25418.1| tRNA/rRNA methyltransferase (SpoU) [Saprospira grandis str. Lewin]
Length = 252
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 81/147 (55%), Gaps = 13/147 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDAL---KANLKLKMVFFSQWDILKELPLP---EDVPQH 57
++ +KQR+ +G ++EG++I+ + L + ++ M W ELP ++ Q+
Sbjct: 15 LQQKKQRDLQGRFVVEGEKIVRELLLQDRFEVEGLMGIEEYW---AELPFEDWAQEPEQY 71
Query: 58 RVDYKNIQLWSDLVTPPGIIGIF-ELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
+ K ++ S L ++ + + A PI ++ L++V D +++PGN+G+I+R+
Sbjct: 72 GLSGKELERMSGLKQANKVLAVVAKREAPPIEGLEQG---LSLVLDRLQNPGNLGTIIRM 128
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
G + + CS CVD+Y+ KVI+A+
Sbjct: 129 ADWFGVKNIFCSPDCVDLYNPKVIQAS 155
>gi|288925042|ref|ZP_06418978.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
gi|288338232|gb|EFC76582.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
Length = 270
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R+ +G + EG +I+ + L + +W K P+ ++ V + ++
Sbjct: 16 KKNRKAEGKFVAEGPKIVGELLAVGQASLLAATREW-FEKNSPISSSTEKYEVTEEELRK 74
Query: 67 WSDLVTPPGIIGIFELP----------AHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
S L P +IG+F++P + D L + D ++DPGN+G+I+R+
Sbjct: 75 ISFLQHPQMVIGVFDIPNKHSTPPSITQEAYTASDAWDSSLILALDGVQDPGNLGTIIRI 134
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
G +VCS D Y+ K ++A
Sbjct: 135 ADWFGITDIVCSEDTADAYNPKTVQAT 161
>gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426]
gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426]
Length = 251
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQHR 58
++K R++ G +LEG ++ +A+K+N L + + W++ VP
Sbjct: 20 TKKGRDETGLFLLEGFHLVEEAIKSNAPLVELIVDERTAVPPGWNV-------TGVPVTI 72
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V ++ S TP GI + + + + A ++ D ++DPGN+G+++R
Sbjct: 73 VTEAVMRAISSTETPQGIAAVCRQLSTELEGVKTA-----LLIDAVQDPGNLGTMIRTAD 127
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
+ G V+ GC D+Y+ KV+RA
Sbjct: 128 SAGIDAVILGEGCADLYNPKVVRAT 152
>gi|452752602|ref|ZP_21952343.1| rRNA methylase [alpha proteobacterium JLT2015]
gi|451959993|gb|EMD82408.1| rRNA methylase [alpha proteobacterium JLT2015]
Length = 266
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 6/146 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWD---ILKELPLPEDVPQHRVD 60
+ +K R+ +G + EG RI +AL+A +MV + + + + L +
Sbjct: 19 LTQKKHRQAEGLFLAEGLRICTEALEAGHVPRMVIAANGERHALTQRLMTETETAGGEAL 78
Query: 61 YKNIQLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
L S + P G++G++ L + ++ + + IVC++++DPGN+G+ILR
Sbjct: 79 LVPPALLSKITGKDNPQGVVGVYRLLETDLPRLERGAANIWIVCESLKDPGNLGTILRTA 138
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA V+ D + + +RA+
Sbjct: 139 DAVGAGGVILLDQSCDPFSVEAVRAS 164
>gi|386043527|ref|YP_005962332.1| TrmH family RNA methyltransferase [Listeria monocytogenes 10403S]
gi|404410446|ref|YP_006696034.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes
SLCC5850]
gi|345536761|gb|AEO06201.1| TrmH family RNA methyltransferase [Listeria monocytogenes 10403S]
gi|404230272|emb|CBY51676.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes
SLCC5850]
Length = 252
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 79/145 (54%), Gaps = 13/145 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKAN-LKLKMVFFSQWDILKELPLPEDVPQHRVDYK 62
+++RK R+K G ++EG ++ +AL+ + L L+++ S + +E L +D + +
Sbjct: 18 LQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELLVSSGVSVPEEW-LKDDYDVFEISTE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN----IVCDNIRDPGNMGSILRVCA 118
L S+ +T G+ + +A+ +P + L ++ D ++DPGN+G+++R
Sbjct: 77 ISHLISETMTEQGVFAV-------VATSEPDMMLLYGKKLLLVDAVQDPGNVGTLIRTAD 129
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G VV +G D+Y+ KVIR+
Sbjct: 130 AAGYDCVVLGKGSADLYNPKVIRST 154
>gi|50954374|ref|YP_061662.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50950856|gb|AAT88557.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 277
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL---KELPLPEDVPQHRVD 60
+ R R + G +LEG + + +AL +L + ++ L +++ +V+
Sbjct: 25 LTKRTARSETGLFLLEGPQAVAEALAFRSELLVELYATPTALERHQDIAQAAAAAGTQVE 84
Query: 61 YKNIQLW---SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+ Q+ +D VTP G + + + I S L + + +RDPGN G+I+R
Sbjct: 85 FVTEQVLGTIADTVTPQGFVAVARQFPTSVREIFAGSPALVAILEEVRDPGNAGTIIRAA 144
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
+ GA VV + VD+Y+ KV+R+
Sbjct: 145 DSAGADAVVLTGRTVDLYNPKVVRS 169
>gi|402835347|ref|ZP_10883916.1| RNA methyltransferase, TrmH family [Mogibacterium sp. CM50]
gi|402274844|gb|EJU24015.1| RNA methyltransferase, TrmH family [Mogibacterium sp. CM50]
Length = 274
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL--PLPEDVPQHRVDYKNI 64
+K R+++G ++EG ++ AL L ++MV + E+ L +V HR+
Sbjct: 26 KKYRDQQGKFLIEGINLVRAALSKALTMEMVLIADDFDYSEIAETLSGNVDYHRIYLVPR 85
Query: 65 QLW---SDLVTPPGIIGIFELPAHPIASIDPASLPLN------IVCDNIRDPGNMGSILR 115
L+ SD GII + ++ + +++ + +V D ++DPGN+G+++R
Sbjct: 86 YLYEKISDAENGSGIIAVVNKSSYSLDTLESMLRSHHGCVGNILVLDRLQDPGNIGTMIR 145
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
A G V +G DIY KV+RA+A
Sbjct: 146 TAVAAGYSIVATIKGTADIYSPKVLRASA 174
>gi|220910387|ref|YP_002485698.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
gi|219866998|gb|ACL47337.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
Length = 260
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-QWDILKELP--LPEDVPQH 57
M + K R + +LEG +L++A++ L+++ F+ QW K+ P L +
Sbjct: 13 MRKLHQGKYRRAQQQFLLEGTHLLLEAVETGYPLEVICFTPQWQA-KQAPDWLAQLEQLT 71
Query: 58 RVDYKNIQLWSDLVT---PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
R++ + Q+ + + T P G++ + P I L + + ++DPGN+G+++
Sbjct: 72 RLEVVSEQVLAAIATTVNPDGVVALAPFQPRPPLEIHH----LGLAVETLQDPGNLGTMI 127
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
R AA GA V+ S V++ + KV+RA A
Sbjct: 128 RTAAAAGAEGVLLSSDSVELENPKVLRATA 157
>gi|193214880|ref|YP_001996079.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
35110]
gi|193088357|gb|ACF13632.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
35110]
Length = 272
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKA-NLKLKMVFFSQWDILKELPLPEDVPQ------ 56
+ +K REK+ + EG R + + L A N + +V I+ ++P+ D+ +
Sbjct: 26 LHDKKFREKEQLFLAEGLRTVTELLSACNAEDDLV-----AIVVKVPIDNDLKKPDCNAG 80
Query: 57 -----HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI----DPASLPLNIVCDNIRDP 107
+ D++ I S G++GIF P AS+ + L ++ D I+DP
Sbjct: 81 KVFVAEKSDFETI---SATEQTQGVVGIFRQPKADEASVFQQLEEKKTALVLIWDGIQDP 137
Query: 108 GNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
GN G+++R A GA + S VD ++ KV+RA+A
Sbjct: 138 GNAGTMIRTAAWFGADAIFASHDSVDFFNPKVVRASA 174
>gi|347752960|ref|YP_004860525.1| tRNA/rRNA methyltransferase SpoU [Bacillus coagulans 36D1]
gi|347585478|gb|AEP01745.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
Length = 251
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K+REK +LEG ++ +ALK + +++ D+ E VP V ++
Sbjct: 18 LTAKKEREKTFTYLLEGFHLVEEALKEEVVTEIIVEEGVDLPNRWN-TEGVPVTTVTHEI 76
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ +D T GI + + P I L + D ++DPGN G+++R A G
Sbjct: 77 SKTLADTETTQGIFAVCRMKKQPSKIIGRRYL----LIDAVQDPGNTGTMIRTADAAGFD 132
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ +G D Y KV+RAA
Sbjct: 133 AVIFGKGTADPYSPKVLRAA 152
>gi|408376887|ref|ZP_11174490.1| tRNA/rRNA methyltransferase SpoU [Agrobacterium albertimagni AOL15]
gi|407748846|gb|EKF60359.1| tRNA/rRNA methyltransferase SpoU [Agrobacterium albertimagni AOL15]
Length = 286
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI-- 64
+K R++ + EG +++IDAL ++ + +++ K PL E V V + +
Sbjct: 36 KKARDESRTFLAEGLKLVIDALDRGWTIRTLVYAKAG--KGKPLVEKVAARTVAARGLVL 93
Query: 65 ----QLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
++ S + P + +FE P+ I P I D +RDPGN+G+I+R
Sbjct: 94 EVSEKVMSSITRRDNPQMVAAVFEQRWTPLKDIQPKGSETWIALDRVRDPGNLGTIIRTA 153
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A GA V+ C D + + +RA
Sbjct: 154 DAAGASGVILVGDCTDPFSMETVRA 178
>gi|225569865|ref|ZP_03778890.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
15053]
gi|225161335|gb|EEG73954.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
15053]
Length = 263
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 5 KSRKQREKKGWLMLEGKRI--------LIDALKANLKLKMVFFSQWDILKELPL-PEDVP 55
K RK R+++ ++EG R+ L++A + K + +L+ + PE +
Sbjct: 18 KKRKARDEEKVFLVEGIRMFREVPAERLLEAYVSESFYKREGGTVSRVLEGCAVRPEILS 77
Query: 56 QHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
DY SD TP G++ + + A +V DN++DPGNMG+++R
Sbjct: 78 DTVYDY-----VSDTKTPQGVLCVVRQKEYTFAEAAGGERAHILVLDNLQDPGNMGTVIR 132
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G +V S CVD+Y+ K IR+
Sbjct: 133 TAEGAGVTGIVMSSECVDVYNPKTIRST 160
>gi|336409925|ref|ZP_08590407.1| hypothetical protein HMPREF1018_02423 [Bacteroides sp. 2_1_56FAA]
gi|335946306|gb|EGN08112.1| hypothetical protein HMPREF1018_02423 [Bacteroides sp. 2_1_56FAA]
Length = 253
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 3 YMKS---RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV 59
Y++S +K R+++ + EG +++ D L ++ S W L+E P+ + V
Sbjct: 11 YIRSLELKKIRKEEKVFLAEGPKLVGDVLGYFPCKLLIATSDW--LEEHPVVQAAEVIEV 68
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ + S L TP ++ +FE P + I ++ L + D+I+DPGN+G+I+R+
Sbjct: 69 TSEELSRTSLLKTPQQVLALFEQPEYEI-DMEAIRNSLCLALDDIQDPGNLGTIIRLADW 127
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G + CS VD+++ K I+A
Sbjct: 128 FGIEHIFCSPNTVDVFNPKTIQAT 151
>gi|306820001|ref|ZP_07453651.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551949|gb|EFM39890.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 251
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 14/143 (9%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVF----FSQWDILKELPLPEDVPQHRVDYKN 63
K R+K EG + + +LK+N K+ V F ++K L E + + ++ N
Sbjct: 22 KYRQKNSMFFDEGIKNIELSLKSNYKMNFVLIREDFKDTSLIK--SLEEKLGEDKILVLN 79
Query: 64 IQLW---SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+++ SD V GII ++++ D ++ D I+DPGN+G+I+R +
Sbjct: 80 EKIFTSISDTVNSQGIIAVYDMKKDEDIKSDKI-----LILDRIQDPGNIGTIIRTAESF 134
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
+ S+G D++ KV+RA
Sbjct: 135 SINTIFYSKGTADVFSPKVVRAT 157
>gi|238917600|ref|YP_002931117.1| TrmH family RNA methyltransferase [Eubacterium eligens ATCC 27750]
gi|238872960|gb|ACR72670.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
Length = 279
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLW 67
++R+K ++EG R ++ + A+L +K+ ++ + E V + + +I++
Sbjct: 36 RERKKNKEYVVEGVR-MVSEVPADLLVKIYMSERFHSNNPEYVHELVKKQGISSDSIEIV 94
Query: 68 SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+D V TP GI+ + + I+ + + PL I+ +N++DPGN+G+ILR+
Sbjct: 95 ADNVFDRMSQTQTPQGIMAVVRMKDSSISDMLTDN-PLLILVENLQDPGNLGTILRMGEG 153
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V+ S VDIY+ K IR+
Sbjct: 154 AGVTGVIMSSNTVDIYNPKTIRST 177
>gi|315281992|ref|ZP_07870501.1| RNA methyltransferase [Listeria marthii FSL S4-120]
gi|313614371|gb|EFR88006.1| RNA methyltransferase [Listeria marthii FSL S4-120]
Length = 252
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 78/145 (53%), Gaps = 13/145 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKAN-LKLKMVFFSQWDILKELPLPEDVPQHRVDYK 62
+++RK R+K G ++EG ++ +AL+ + L L+++ S + +E L D + +
Sbjct: 18 LQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELLVSSGVSVPEEW-LKGDYDVFEISAE 76
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN----IVCDNIRDPGNMGSILRVCA 118
L S+ +T G+ + +A+ +P + L ++ D ++DPGN+G+++R
Sbjct: 77 ISHLISETMTEQGVFAV-------VATSEPDMMLLYGKKLLLVDAVQDPGNVGTLIRTAD 129
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G VV RG D+Y+ KVIR+
Sbjct: 130 AAGYDCVVLGRGSADLYNPKVIRST 154
>gi|256847491|ref|ZP_05552937.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
gi|256716155|gb|EEU31130.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
Length = 257
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 11/144 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ-----HR 58
+++RK R+K G +L+G ++ +A +N +L + S +EL ED+ +
Sbjct: 19 LQTRKGRKKFGQYLLDGWHLVQEASHSNQRLIALIGS----AEELSQHEDIVARFENVYE 74
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V + I+ ++ TP GI+ + E+P + + ++ D ++DPGN+G+++R
Sbjct: 75 VTPEIIKHITETNTPQGIVAVVEMP--DVNQVTNPKTGAWLLLDRVQDPGNVGTMVRTAD 132
Query: 119 AVGARQVVCSRGCVDIYDNKVIRA 142
A G VV S+ D ++ KV+R+
Sbjct: 133 AAGFAGVVASKRTADFFNPKVVRS 156
>gi|90420557|ref|ZP_01228464.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
gi|90335285|gb|EAS49038.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
Length = 291
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVF---------FSQWDILKELPLPEDV 54
+ ++ R++ G + EG +++ DAL A +++ + F + + + L DV
Sbjct: 42 LAQKRHRDETGLFLAEGLKLVGDALDAGWEIQTLVIARAAAGHEFLEKTAARTVSLGGDV 101
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ + K ++ + P +G+F P+A +D + + + D +RDPGN+G++L
Sbjct: 102 LE--ANAKVLEAITRRDNPQNAVGVFRRRLTPLAKLDVSGRNVIVALDRVRDPGNLGTVL 159
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA VV VD + + +RA
Sbjct: 160 RTADAAGATGVVLIGETVDPFSLETVRA 187
>gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX]
gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX]
Length = 275
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 9/145 (6%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPL-----PEDVPQHRV 59
++ +QRE++ + EG + + +AL + ++ + + + L +P HRV
Sbjct: 23 RAFRQRERR--FLAEGPQAVREALDLPDVVHELYATAEAMQRHTALIRTAEQAGIPVHRV 80
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ + VTP G++ + P++++D L +V ++RDPGN G++LR A
Sbjct: 81 TLDVMGELAQTVTPQGLLAVCSFVDVPLSAVDRPRL--VVVLSHVRDPGNAGTVLRSADA 138
Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
GA V+ + VD Y+ K +RA+A
Sbjct: 139 AGADAVIFTDASVDPYNGKCVRASA 163
>gi|389864877|ref|YP_006367118.1| tRNA/rRNA methyltransferase [Modestobacter marinus]
gi|388487081|emb|CCH88637.1| tRNA/rRNA methyltransferase [Modestobacter marinus]
Length = 268
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALK-------ANLKLKMVFFSQWDILK--ELPLPEDV 54
+ R R+ G + EG++ + +AL A L+L F ++ + EL V
Sbjct: 18 LTRRTGRDDAGAFLAEGRQAVTEALAEAETDPDAVLEL---FATEAAAVAHGELLASTRV 74
Query: 55 PQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASI--DPASLPLNIVCDNIRDPGNMGS 112
P H V + S+ VTP G++ + L ++ DP L + + + DPGN G+
Sbjct: 75 PVHLVTERAAASLSETVTPQGLVAVCALRDVDAGTLVTDPPRLAVALA--ELADPGNAGT 132
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
+LR A GA VV G D Y+ KV+R++A
Sbjct: 133 VLRTADACGAGTVVFGSGSADPYNGKVVRSSA 164
>gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|373451747|ref|ZP_09543666.1| hypothetical protein HMPREF0984_00708 [Eubacterium sp. 3_1_31]
gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|371967968|gb|EHO85435.1| hypothetical protein HMPREF0984_00708 [Eubacterium sp. 3_1_31]
Length = 243
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
K +K R+ ++EG+ +L +A A L ++ + Q K +P E P + V + +
Sbjct: 18 KEKKYRDADQKFLIEGEHLLQEAHTAGL-IECILVEQG---KNIPY-EQYPVYYVTREIL 72
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
+ +D V+ ++ + P + D I+ D ++DPGN+G+ILR + +
Sbjct: 73 KKLTDSVSGSWVMAVCHFPEQQALTSDKI-----IILDGVQDPGNLGTILRTALSFSYQT 127
Query: 125 VVCSRGCVDIYDNKVIRAA 143
++ S+ VD+Y+ KVIR+
Sbjct: 128 ILLSKNSVDVYNEKVIRST 146
>gi|421350624|ref|ZP_15800989.1| spoU rRNA Methylase family protein [Vibrio cholerae HE-25]
gi|395951069|gb|EJH61683.1| spoU rRNA Methylase family protein [Vibrio cholerae HE-25]
Length = 244
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ + LK++ +F + + + +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELTNSTLKVQHIFATAEFLAEHAQALAGFQCIEATLDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P + P + L I D + DPGN+G+I+RV G
Sbjct: 73 LTKVSTLVSNNAAIAVVEIPHIEV----PKAQGLMIALDGVSDPGNLGTIIRVADWYGIS 128
Query: 124 QVVCSRGCVDIYDNKVIRA 142
++ S+ C D Y+ K I A
Sbjct: 129 HIIASQDCADPYNPKTISA 147
>gi|259503594|ref|ZP_05746496.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
gi|259168418|gb|EEW52913.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
Length = 257
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K R ++G +L+G ++ +A+KA + L+ + + + L + + V
Sbjct: 18 LQTKKFRRQRGEYLLDGWHLVNEAVKAGILLRQLIGTADQLTAHRELVDRAAEAYVVTPE 77
Query: 64 I-QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNI-----VCDNIRDPGNMGSILRVC 117
I Q ++ VTP GI I +LP D +P NI + D ++DPGN+G+++R
Sbjct: 78 IMQHITETVTPQGIAAIVDLP-------DAHRVPANIQGAWLLLDRVQDPGNVGTMVRTA 130
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A G VV D++ KV+R+
Sbjct: 131 DAAGFAGVVVGNRSADLFGPKVVRS 155
>gi|225075264|ref|ZP_03718463.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
NRL30031/H210]
gi|224953439|gb|EEG34648.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
NRL30031/H210]
Length = 263
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 23/152 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH-RVDYK 62
+ K R + G +LEG +L L++ K V+ LPE QH +
Sbjct: 19 LTQAKARRESGETVLEGVHLLQSYLQSGGTPKQVY-----------LPEKKQQHPEIQEI 67
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIAS-----ID---PASLPLN---IVCDNIRDPGNMG 111
QL L+T G + ++ + A ID A LP + +V + ++DPGN G
Sbjct: 68 TAQLDEGLITWVGNEALSKITSLSDADDVMTWIDIPKQAGLPSDGDCVVLERVQDPGNAG 127
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+ILR AA G RQ+VC VDI+ KV+RA
Sbjct: 128 TILRSAAAAGVRQIVCGNDSVDIWSPKVLRAG 159
>gi|350530752|ref|ZP_08909693.1| RNA methyltransferase, TrmH family [Vibrio rotiferianus DAT722]
Length = 244
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ ++L +K +F + + D +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSSLTVKQIFATAEFLELHRQELNDFECIEASLDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P + P + L I D + DPGN+G+I+RV G +
Sbjct: 73 LTKASTLVSNNAAIAVVEIPNVKV----PQAKGLMIALDGVSDPGNLGTIIRVADWYGIK 128
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++ S C D Y+ K I A
Sbjct: 129 HIIASTDCADPYNPKTISAT 148
>gi|449146940|ref|ZP_21777691.1| TrmH family RNA methyltransferase [Vibrio mimicus CAIM 602]
gi|449077434|gb|EMB48417.1| TrmH family RNA methyltransferase [Vibrio mimicus CAIM 602]
Length = 244
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ + LK++ +F + + + + +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELASSTLKVQNIFATAEFLAEHANVLAGYESTEAALDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P + P + L I D + DPGN+G+I+R+ G +
Sbjct: 73 LTKVSTLVSNNAAIAVVEIPRIEV----PKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQ 128
Query: 124 QVVCSRGCVDIYDNKVIRA 142
++ S+ C D Y+ K I A
Sbjct: 129 HIIASQDCADPYNPKTISA 147
>gi|153813024|ref|ZP_01965692.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
gi|149830826|gb|EDM85916.1| RNA methyltransferase, TrmH family [Ruminococcus obeum ATCC 29174]
Length = 258
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 67/136 (49%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLW 67
K R ++G + EG+++ ++A ++ V S + + + V+ +
Sbjct: 21 KARREQGLFIAEGRKMFLEAPDDWIEKIYVAESMLEDEEVMKKVRRFSWDAVENGVFRQM 80
Query: 68 SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
D TP GI+ + P++ + + PL +V ++++DPGN G+I+R G V
Sbjct: 81 CDTQTPQGILTVLRQPSYELEDLLKEEKPLLMVLEDLQDPGNAGTIIRTGEGAGVSGVFL 140
Query: 128 SRGCVDIYDNKVIRAA 143
++ CVDI + KVIRA
Sbjct: 141 TKTCVDITNPKVIRAT 156
>gi|398386285|ref|ZP_10544288.1| rRNA methylase [Sphingobium sp. AP49]
gi|397718653|gb|EJK79239.1| rRNA methylase [Sphingobium sp. AP49]
Length = 266
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+ +G + EG RIL +A + + +M+F + L L + + D
Sbjct: 19 LREKKYRKAEGLFLAEGLRILTEAREEGVLPEMLFHAGSTHPLALDLIDAIEADGGDV-- 76
Query: 64 IQLWSDLVT-------PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
I+ D+++ ++G++ P+ +D ++ + IV ++RDPGN+G+ILR
Sbjct: 77 IETTPDILSKISGKDNAQAVVGVYRDRLTPLEKLDRSTADIWIVAQSLRDPGNLGTILRT 136
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA ++ CVD + + +RA+
Sbjct: 137 GDAVGAGGLILIDDCVDPFSVESVRAS 163
>gi|452975425|gb|EME75244.1| tRNA/rRNA methyltransferase YsgA [Bacillus sonorensis L12]
Length = 248
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE----DVPQHRV 59
+ ++K+R K ++EG+ ++ +ALK +K + +++E LP V + +
Sbjct: 18 LHTKKERTKTNTFLIEGEHLVEEALKTPGNVKEIM-----VMEEADLPAGLDVSVSCYIL 72
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ ++ TP + + ++P P ++ D ++DPGN+G+I+R A
Sbjct: 73 SAEAFSAITETETPQAVAAVCQMPEQ-----GPFQYEKLLLADAVQDPGNLGTIIRTADA 127
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G VV G VD Y+ K +R+A
Sbjct: 128 AGIDAVVVGHGTVDPYNAKTLRSA 151
>gi|422695908|ref|ZP_16753886.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX4244]
gi|315146678|gb|EFT90694.1| RNA 2'-O ribose methyltransferase substrate binding protein
[Enterococcus faecalis TX4244]
Length = 258
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLIEEAVKANADVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGI--FELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
S+L T GI+ I E + S L L DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQLLSFKGGWLLL----DNIQDPGNVGTMIRTADAAGL 137
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 138 AGVILGKGTADIYNTKVLRS 157
>gi|423713322|ref|ZP_17687582.1| hypothetical protein ME1_00328 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395423363|gb|EJF89558.1| hypothetical protein ME1_00328 [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 284
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
+ +K R ++G M EG +++IDAL ++ + FS+ I E V
Sbjct: 26 LSQKKNRNREGLFMAEGLKLVIDALNLGWTIQTLIFSKSKIGNAAIENTAARTVANGGFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K + + +T P ++GIF+ + +I + + + +RDPGN+G+I+R
Sbjct: 86 IKASEKVMESITHRDNPQTVVGIFKQQWQSLETIKGRVTDVYVALERVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 146 ADAVGAKGVILIGETTDPFSPETVRAT 172
>gi|333990463|ref|YP_004523077.1| 23S rRNA methyltransferase [Mycobacterium sp. JDM601]
gi|333486432|gb|AEF35824.1| 23S rRNA methyltransferase TsnR [Mycobacterium sp. JDM601]
Length = 262
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 2 VYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDV--PQHRV 59
V + R+++ + EG ++ A++ L ++ VF ++ + L V P H+V
Sbjct: 13 VKLHRHVARKREQRFLAEGPNLVEAAIRRGLAVE-VFATESAAQRHGELLASVRAPVHQV 71
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ + SD VTP G++ + +P + + + L V I +PGN G+++R+ A
Sbjct: 72 SDRAAKALSDTVTPAGLVAVCTVPEPDLGGLLADAPHLVAVAVGIGEPGNAGTLIRIADA 131
Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
GA VV + VD Y+ K +RA+A
Sbjct: 132 TGASLVVLTGNSVDPYNGKCLRASA 156
>gi|319638350|ref|ZP_07993112.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
gi|317400099|gb|EFV80758.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
Length = 263
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 23/152 (15%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH-RVDYK 62
+ K R + G +LEG +L L++ K V+ LPE QH +
Sbjct: 19 LTQAKARRESGETVLEGVHLLQTYLQSGGTPKQVY-----------LPEKKQQHPEIQEI 67
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIAS-----ID---PASLPLN---IVCDNIRDPGNMG 111
QL L+T G + ++ + A ID A LP + +V + ++DPGN G
Sbjct: 68 TAQLDEGLITWVGNEALSKITSLTDADDVMTWIDIPKQAGLPSDDDCVVLERVQDPGNAG 127
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+ILR AA G +Q+VCS VDI+ KV+RA
Sbjct: 128 TILRSAAAAGVKQIVCSNDSVDIWSPKVLRAG 159
>gi|315302761|ref|ZP_07873535.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
gi|313628869|gb|EFR97228.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
Length = 252
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 21/149 (14%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+++RK R+K G ++EG ++ +AL + + + S K++ +PE+ + D
Sbjct: 18 LQTRKGRDKTGTYLVEGFHLVEEALHQDGLVVELLVS-----KDVSVPEEWLKGNYDVFE 72
Query: 64 I-----QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLN----IVCDNIRDPGNMGSIL 114
I S+ +T G+ + +A+ +P + L ++ D ++DPGN+G+++
Sbjct: 73 ISTEISHFISETMTEQGVFAV-------VATTEPDMMLLYGKKLLLVDAVQDPGNVGTLI 125
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R A G V+ RG D+Y+ KVIR+
Sbjct: 126 RTADAAGYDAVILGRGSADLYNPKVIRST 154
>gi|256956680|ref|ZP_05560851.1| rRNA methylase [Enterococcus faecalis DS5]
gi|300860699|ref|ZP_07106786.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
Ef11]
gi|422709897|ref|ZP_16767243.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0027]
gi|256947176|gb|EEU63808.1| rRNA methylase [Enterococcus faecalis DS5]
gi|300849738|gb|EFK77488.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
Ef11]
gi|315035621|gb|EFT47553.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecalis TX0027]
Length = 258
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDYKNI 64
RE+ ++EG ++ +A+KAN ++ + F+Q W L E V + +
Sbjct: 24 REELNQYIIEGFHLIEEAVKANADVQWILFNQRGQQEWGTW--LAEQETEKLIFVSDEVL 81
Query: 65 QLWSDLVTPPGIIGI--FELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
S+L T GI+ I E + S L L DNI+DPGN+G+++R A G
Sbjct: 82 NSLSELPTSQGILAIVTLETQQEQLLSFKGGWLLL----DNIQDPGNVGTMIRTADAAGL 137
Query: 123 RQVVCSRGCVDIYDNKVIRA 142
V+ +G DIY+ KV+R+
Sbjct: 138 AGVILGKGTADIYNTKVLRS 157
>gi|347542239|ref|YP_004856875.1| TrmH family RNA methyltransferase [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985274|dbj|BAK80949.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 260
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYK- 62
+K RK R K ++EG R + +A+K N ++ V S+ +D R ++K
Sbjct: 18 LKVRKNRYKSKLYLIEGIRFVEEAIKNNCEINYVIISES--------KKDYIIDRFNFKD 69
Query: 63 ---NIQLWSDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMG 111
N+ ++SD + GII ++ D + + D I+DPGN+G
Sbjct: 70 GLFNVIVFSDELFEKVKQTEKTQGIIACLKIR-DTFKKFDFNE-GIYFLIDKIQDPGNLG 127
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+I+R AV A ++ +G VDIY++KV+R+
Sbjct: 128 TIIRTAVAVNALGIILIKGSVDIYNDKVLRST 159
>gi|421618533|ref|ZP_16059508.1| rRNA methylase [Pseudomonas stutzeri KOS6]
gi|409779286|gb|EKN58944.1| rRNA methylase [Pseudomonas stutzeri KOS6]
Length = 243
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-VPQHRVDYK 62
+ +K R + G ++EG+ ++++ KA ++ + S+ + + H + +
Sbjct: 9 LHQKKYRGEFGHFLVEGEHLVLELQKAAVRNPQLERSELYVTSAYEHWQSPFRTHLISDR 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ +D TP GI+ + +PA P + I I+DPGN+G+ILR A G
Sbjct: 69 QMAQIADTKTPQGIVALVPMPATGATVAAPVAGERAIYLHEIQDPGNLGTILRTLAWFGN 128
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ + S G VD Y+ KV+R++
Sbjct: 129 FRCLLSPGSVDPYNPKVVRSS 149
>gi|291525521|emb|CBK91108.1| rRNA methylases [Eubacterium rectale DSM 17629]
Length = 263
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 8 KQREKKGWLMLEGKRILIDALK---ANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
K+R+K+G ++EG ++ +A + + + FF+ +D KE V
Sbjct: 21 KERKKQGVFVVEGPKMSFEAPYDWVSAVYMSESFFN-YDRFKEEKKRFLDKTEIVSDAVF 79
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
+ SD TP G++ I ++P + I + +V ++I+DPGN+G+++R G
Sbjct: 80 KSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDPGNLGTMIRTGEGAGVSG 139
Query: 125 VVCSRGCVDIYDNKVIRAA 143
++ +R VDI++ K +R+
Sbjct: 140 IIMNRTTVDIFNPKTVRST 158
>gi|395792660|ref|ZP_10472084.1| hypothetical protein MEI_00705 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395432217|gb|EJF98206.1| hypothetical protein MEI_00705 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 284
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILK---ELPLPEDVPQHRVD 60
+ +K R ++G M EG +++IDAL ++ + FS+ I E V
Sbjct: 26 LSQKKNRNREGLFMAEGLKLVIDALNLGWTIQTLIFSKSKIGNAAIENTAARTVANGGFV 85
Query: 61 YKNIQLWSDLVT----PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
K + + +T P ++GIF+ + +I + + + +RDPGN+G+I+R
Sbjct: 86 IKASEKVMESITHRDNPQTVVGIFKQQWQSLETIKGRVTDVYVALERVRDPGNLGTIIRT 145
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA+ V+ D + + +RA
Sbjct: 146 ADAVGAKGVILIGETTDPFSPETVRAT 172
>gi|296140117|ref|YP_003647360.1| tRNA/rRNA methyltransferase SpoU [Tsukamurella paurometabola DSM
20162]
gi|296028251|gb|ADG79021.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
20162]
Length = 265
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY---KNIQL 66
R K G + EG + AL A L + +F ++ D P D+ RV Y + ++
Sbjct: 32 RRKAGLFLAEGSNAVTSALAAGL-VDEIFVTE-DGAARYP---DLLTGRVAYVTDRAMRG 86
Query: 67 WSDLVTPPGIIGIFE-LPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
SD VTPPGI+ + LP + P L V ++ +PGN G+++RV AVGA V
Sbjct: 87 LSDTVTPPGIVAVCRALPEGRV----PDGARLVAVPVDVAEPGNAGTVIRVADAVGADAV 142
Query: 126 VCSRGCVDIYDNKVIRAAA 144
+ + VD + KV+RA+A
Sbjct: 143 LLAGDAVDPMNGKVVRASA 161
>gi|395768424|ref|ZP_10448939.1| rRNA methylase [Streptomyces acidiscabies 84-104]
Length = 281
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKEL---PLPEDVPQHRVD 60
+ R R K+ + EG + + +A K L + ++ V H D
Sbjct: 22 LAKRNFRSKERLFLAEGPQAVREAAKGTLVELFATVEAAERYADVVGDARDAGVRVHLAD 81
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ + S VTP G++GI P I A L V ++RDPGN G++LR A
Sbjct: 82 EQVVADISTTVTPQGLVGICRFLDTPFEEILAARPRLVAVLAHVRDPGNAGTVLRCADAA 141
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
GA VV + VD+Y+ K +RA+
Sbjct: 142 GAEAVVLTDASVDLYNPKAVRAS 164
>gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472]
gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 266
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 20/151 (13%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ + R K+G ++LEG + L+A +L ++ ++ K P+ R +
Sbjct: 23 VQHSRDRRKEGVMVLEGIHLAESCLQAGGELSRIYLNEAAAGK--------PEVRRLLDS 74
Query: 64 IQLWSDLVTPPGII-----------GIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGS 112
+ S +V+ P + + L P PA ++ ++I+DPGN+G+
Sbjct: 75 LPPGSTVVSLPEAVMSKVTALASAGELLALSPRPSPEAPPAQAA-RVMLEDIQDPGNLGT 133
Query: 113 ILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
ILR AA G V S+GCVD++ KV+RA
Sbjct: 134 ILRTAAAAGVYDVFLSKGCVDVFSPKVLRAG 164
>gi|317472890|ref|ZP_07932196.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
gi|316899610|gb|EFV21618.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
Length = 228
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 54 VPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
+P V K + SD TP GI+ + ++ ++ I S ++ +N++DPGN+G++
Sbjct: 36 IPFEEVSPKVFREISDTETPQGILSLVKMKQSTLSEILKRSGSSILLLENLQDPGNLGTL 95
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+R G ++ SR VDIY+ KVIR+
Sbjct: 96 IRTGEGAGVSGIIMSRDTVDIYNPKVIRST 125
>gi|291520861|emb|CBK79154.1| rRNA methylases [Coprococcus catus GD/7]
Length = 260
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMV---FFSQWDILKELPLPEDVPQHRVDYKNI 64
KQR K+ + EG R++ + L+ V F+ L+ L L + + VD +
Sbjct: 21 KQRRKEKCFVAEGIRMVAETPADRLEKVYVSESFYRHPPELRGLDLSKALI---VDDQVF 77
Query: 65 QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQ 124
+ SD TP GI+ + + + +I L + +NI+DPGN+G+++R G
Sbjct: 78 RQVSDTQTPQGIMAVVRQQENSLDAIMKQPDALLLFLENIQDPGNLGTMMRTAEGAGVTG 137
Query: 125 VVCSRGCVDIYDNKVIRAA 143
++ SR DIY+ K IRA
Sbjct: 138 IIMSRETTDIYNPKTIRAT 156
>gi|399522685|ref|ZP_10763348.1| 23S rRNA methyltransferase [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399109549|emb|CCH39909.1| 23S rRNA methyltransferase [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 241
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-VPQHRVDYK 62
++ +K RE+ G ++EG+ ++++ KA ++ S+ + + H + +
Sbjct: 9 LQQKKYREQFGHFLVEGEHLVLELQKAAQHAPLLASSELYVTAAYEHWQSPFRTHLISDR 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ +D TP GII + +P I S A I I+DPGN+G+ILR A G
Sbjct: 69 QMAQIADTKTPQGIIAV--VPMAAIGSGPSAPAGKAIYLHEIQDPGNLGTILRSLAWFGG 126
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ + S G VD ++ KV+RA+
Sbjct: 127 FRCLLSPGSVDPFNPKVVRAS 147
>gi|28897728|ref|NP_797333.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
gi|260363841|ref|ZP_05776596.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
gi|260876899|ref|ZP_05889254.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
AN-5034]
gi|260897959|ref|ZP_05906455.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
Peru-466]
gi|260902161|ref|ZP_05910556.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
gi|28805941|dbj|BAC59217.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
2210633]
gi|308085459|gb|EFO35154.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
Peru-466]
gi|308093903|gb|EFO43598.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
AN-5034]
gi|308108291|gb|EFO45831.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
gi|308113897|gb|EFO51437.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
Length = 244
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL----KELPLPEDVPQHRV 59
+ +KQR+ G +++G++ +++ ++L +K VF + D L +EL E V
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELASSSLVVKQVF-ATADFLESHRQELSGFECV---EA 68
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
++ S LV+ I + E+P +P + L I D + DPGN+G+I+RV
Sbjct: 69 SLDDLTKASTLVSNNAAIAVVEIPNVK----EPQAKGLMIALDGVSDPGNLGTIIRVADW 124
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G + ++ S C D Y+ K I A
Sbjct: 125 YGIKHIIASTDCADPYNPKTISAT 148
>gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRV- 59
M +K R+K+ ++EG R+ + LK + L + +D L + + E P + V
Sbjct: 14 MALIKKSSARKKQNAYIIEGIRMFRE-LKKDEILDVFVSESFDALNKKLISEIYPGYEVV 72
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDP--ASLPLNI-VCDNIRDPGNMGSILRV 116
K + SD TP G++ + + + + +I P N+ + D+++DPGN+G+++R
Sbjct: 73 SDKIFESVSDTKTPQGVMVVVKRKEYTLENILTVRGEFPHNLLILDSLQDPGNLGTLVRA 132
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
G ++ + VDIY+ KVIR+
Sbjct: 133 GEGAGITGIIMNESTVDIYNPKVIRST 159
>gi|120404299|ref|YP_954128.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
gi|119957117|gb|ABM14122.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
PYR-1]
Length = 248
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 2 VYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY 61
V + R + + EG ++ AL+ L + VF ++ K L H V
Sbjct: 5 VKLHRHTGRRRAARFLAEGPNLVEAALRRGL-VHEVFATEGAAAKFAALLGAASVHLVTD 63
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVG 121
K + SD VTP G++ + +P + + + L V I +PGN G+++RV A+G
Sbjct: 64 KAAKALSDTVTPVGLVAVCSIPEADLDQVLAGNPKLVAVPVGISEPGNAGTLIRVADAMG 123
Query: 122 ARQVVCSRGCVDIYDNKVIRAAA 144
A VV + VD Y+ K +RA+A
Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASA 146
>gi|323342892|ref|ZP_08083124.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|336066305|ref|YP_004561163.1| SpoU rRNA methylase family protein [Erysipelothrix rhusiopathiae
str. Fujisawa]
gi|322464004|gb|EFY09198.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|334296251|dbj|BAK32122.1| SpoU rRNA methylase family protein [Erysipelothrix rhusiopathiae
str. Fujisawa]
Length = 235
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R++ +++EG+ ++ +A A + K + ++ D ++ + E + Q
Sbjct: 17 LSKKKYRDEHNEVLIEGEHLIQEANTAGIVKKTIGLTESD---DVQITEHIAQK------ 67
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S+ ++ I P + D ++CD ++DPGN+G+I+R + G
Sbjct: 68 ---LSNTISGSHQFAIISKPQRELKEADRY-----LICDGVQDPGNLGTIIRTAHSFGFD 119
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V+ S CVD +++KVIR+
Sbjct: 120 AVIVSETCVDEFNDKVIRST 139
>gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905]
gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905]
Length = 254
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQ 65
+RK+RE+ G ++EG ++ +ALK ++ + + L L + + V +
Sbjct: 21 TRKERERSGEFIVEGFHLVEEALKNKEQVLQIIVREGVDLPMLWPIDGIAIIEVTSVVAK 80
Query: 66 LWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQV 125
+++ T G+ I + PA + AS ++ D ++DPGN+G+++R A G V
Sbjct: 81 EFAETETSQGVFAICKQPA--LEEEVKASWRKVLLIDAVQDPGNIGTMIRTADAAGLDAV 138
Query: 126 VCSRGCVDIYDNKVIRAA 143
+ +GC D+Y+ K +RAA
Sbjct: 139 ILGKGCADVYNPKTLRAA 156
>gi|425446941|ref|ZP_18826937.1| putative enzyme [Microcystis aeruginosa PCC 9443]
gi|389732633|emb|CCI03480.1| putative enzyme [Microcystis aeruginosa PCC 9443]
Length = 264
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 7/146 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--RVDY 61
+ ++R+++ ++EG +L AL N L+ V +++ ++ L E RV+
Sbjct: 16 LHRTRERQEQNLSLIEGTHLLETALAVNCSLETVCYTEKWQQRQAELAEKFQNQAKRVEI 75
Query: 62 KNIQLWSDLVT---PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ ++ + L T P G+I + H + I P L L +V + ++DPGN+G+I+R
Sbjct: 76 VSPEVLASLATTVNPDGVIAT--ISRHHLHPIPPNPLQLGLVLERLQDPGNLGTIIRTAV 133
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAAA 144
A + + S V+I + KVIR++A
Sbjct: 134 ATEVQGIWLSLDSVEIDNPKVIRSSA 159
>gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
str. F0412]
gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
str. F0412]
Length = 264
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW-----DILKELPLPEDVP 55
++ + RK R+K G ++EG R + D + A +K V + ++L L L
Sbjct: 15 IIALGQRKNRQKSGEYIVEGIRSIRD-IAAMGAVKTVVIRESKAQDKNVLDLLTLDSAQS 73
Query: 56 QHRVDYKN--IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
H ++ + V G++ I P H I S+ L I D ++DPGN+G+I
Sbjct: 74 AHTYIVQDPVFDKIDNTVNGQGVVAIVSKPKHNIESVSIED-GLYITLDGVQDPGNLGTI 132
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+R A G + + +G VD +++K +R+
Sbjct: 133 IRTAVAAGVKGIFLMKGTVDPFNDKTVRST 162
>gi|284035913|ref|YP_003385843.1| tRNA/rRNA methyltransferase SpoU [Spirosoma linguale DSM 74]
gi|283815206|gb|ADB37044.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
Length = 248
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 32/156 (20%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +K R++ G ++EG + + + L+++ + ++V ++ KE H D++
Sbjct: 13 LHQKKYRQQHGAFLVEGAKSVQEVLQSDFQTELVVATE-GFYKE-------NAHLTDHQR 64
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLP----------------LNIVCDNIRDP 107
TP I + EL + A+L + ++ D+IRDP
Sbjct: 65 --------TPVEIASVAELERAGTLESNNAALAVVRTKENRPLLAGPNEIALILDDIRDP 116
Query: 108 GNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
GN+G+ILR+ G R+++CS D+Y+ KVI A+
Sbjct: 117 GNLGTILRIADWYGVRKILCSETTADVYNPKVISAS 152
>gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
Length = 268
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+++RK R+++G +LEG ++ +AL+A+ L + ++ ++ P+ V + + Y
Sbjct: 28 LQTRKGRKQQGRYLLEGWHLVNEALQADRGLHELIGTKEELAAH---PDIVARFKEVYSV 84
Query: 64 ----IQLWSDLVTPPGIIGIFELP-AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ ++ VTP GI+ + +LP H +A+ + + D ++DPGN+G+++R
Sbjct: 85 TPAIMAAVTETVTPQGIMVVADLPDLHQVATDLSGAW---LFLDRVQDPGNVGTMVRTAD 141
Query: 119 AVGARQVVCSRGCVDIYDNKVIRA 142
A G VV G D++ KV+R+
Sbjct: 142 AAGFAGVVAGDGSADLFSPKVVRS 165
>gi|424033183|ref|ZP_17772599.1| spoU rRNA Methylase family protein [Vibrio cholerae HENC-01]
gi|408874977|gb|EKM14136.1| spoU rRNA Methylase family protein [Vibrio cholerae HENC-01]
Length = 244
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 24/150 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ ++L +K VF + E + QH + +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSSLTVKQVFAT----------AEFLEQHSQELNS 62
Query: 64 IQL----------WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
+ S LV+ I + E+P + P + L I D + DPGN+G+I
Sbjct: 63 FECIEASLDDLTKASTLVSNNAAIAVVEIPNVTV----PQAKGLMIALDGVSDPGNLGTI 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+RV G ++ S C D Y+ K I A
Sbjct: 119 IRVADWYGIEHIIASTDCADPYNPKTISAT 148
>gi|221632836|ref|YP_002522058.1| putative 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
DSM 5159]
gi|221156608|gb|ACM05735.1| possible 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
DSM 5159]
Length = 271
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 16 LMLEGKRILIDALKANLKLKMVFF--SQWDILKE--LPLPEDVPQH--RVDYKNIQLWSD 69
++EG + + DA++A + +F+ ++ D L++ + + V V + + ++
Sbjct: 31 FLVEGPKTIADAVQAGYRPSHLFYVPTRLDPLEQKVVARAQAVGTRIIAVTERVLHEIAE 90
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPL-NIVCDNIRDPGNMGSILRVCAAVGARQVVCS 128
+TP ++ +F +P+ P P + PL ++ D ++DPGN+G++LR G V+ +
Sbjct: 91 TMTPQAVVAVFPIPSIPFRL--PTAEPLFALIVDRLQDPGNLGTLLRSALGAGVHAVLLT 148
Query: 129 RGCVDIYDNKVIRAAA 144
G VD ++ KV+RAAA
Sbjct: 149 PGTVDPFNPKVVRAAA 164
>gi|21674700|ref|NP_662765.1| SpoU rRNA methylase [Chlorobium tepidum TLS]
gi|21647908|gb|AAM73107.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
Length = 263
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKA----NLKLKMVF----FSQWDILKELPLPE 52
+ + +K R+ +G + EG R + + L++ ++ +VF Q D L+
Sbjct: 17 LARLGQKKHRDSEGLFLAEGLRTVSELLQSLSDPSMLHALVFDEKAAGQLDGLERFAGKA 76
Query: 53 DVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVC-DNIRDPGNMG 111
+ ++K + + +P G++ F P PAS +V D+++DPGN+G
Sbjct: 77 WLAGPN-EFKRL---AQTTSPQGVVAAFRKPES--GEFRPASARSFVVALDDVQDPGNVG 130
Query: 112 SILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
+I+R A GA V+C RG D Y+ K +R++A
Sbjct: 131 TIIRTAAWFGAEAVICGRGTADPYNAKSVRSSA 163
>gi|291542636|emb|CBL15746.1| rRNA methylases [Ruminococcus bromii L2-63]
Length = 260
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNI 64
KS K R + G + EG RI +DA+ + + F S+ + ++ D+ N+
Sbjct: 20 KSAKYRRESGLFIAEGVRICMDAMLSKAHIDTFFASE----------KASEKYADDFSNL 69
Query: 65 QLWSDLV---------------TPPGIIGIFELPAHPIASIDPASLPLNIVC-DNIRDPG 108
Q +SD +P G + + + A D + DN++DPG
Sbjct: 70 QKYSDKTFIVSDKIFNQMCDTESPQGFLCVIK-ALDKTACFDKIKTGDKFLALDNLQDPG 128
Query: 109 NMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
N+G+ILR A+ +V S C DIY KV+R +
Sbjct: 129 NLGTILRTAEALNVTGIVLSADCCDIYSPKVVRGS 163
>gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
Length = 259
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+++RK R+++G +LEG ++ +AL+A+ L + ++ ++ P+ V + + Y
Sbjct: 19 LQTRKGRKQQGRYLLEGWHLVNEALQADRGLHELIGTKEELAAH---PDIVARFKEVYSV 75
Query: 64 ----IQLWSDLVTPPGIIGIFELP-AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
+ ++ VTP GI+ + +LP H +A+ + + D ++DPGN+G+++R
Sbjct: 76 TPAIMAAVTETVTPQGIMVVADLPDLHQVATDLSGAW---LFLDRVQDPGNVGTMVRTAD 132
Query: 119 AVGARQVVCSRGCVDIYDNKVIRA 142
A G VV G D++ KV+R+
Sbjct: 133 AAGFAGVVAGDGSADLFSPKVVRS 156
>gi|424842683|ref|ZP_18267308.1| rRNA methylase [Saprospira grandis DSM 2844]
gi|395320881|gb|EJF53802.1| rRNA methylase [Saprospira grandis DSM 2844]
Length = 252
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP---EDVPQHRVD 60
++ +KQR+ +G ++EG++I+ + L + ELP ++ Q+ +
Sbjct: 15 LQQKKQRDLQGRFVVEGEKIVRELLLQEHFEVEALMGIEEYWAELPFEDWAQEPEQYGLS 74
Query: 61 YKNIQLWSDLVTPPGIIGIF---ELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
K ++ S L ++ + E P PI ++ L++V D +++PGN+G+I+R+
Sbjct: 75 GKELERMSGLKQANKVLAVVAKRETP--PIEGLEQG---LSLVLDRLQNPGNLGTIIRMA 129
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
G + + CS CVD+Y+ KVI+A+
Sbjct: 130 DWFGVKNIFCSPDCVDLYNPKVIQAS 155
>gi|290961735|ref|YP_003492917.1| rRNA methylase [Streptomyces scabiei 87.22]
gi|260651261|emb|CBG74383.1| putative rRNA methylase [Streptomyces scabiei 87.22]
Length = 280
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ------WDILKELPLPEDVPQH 57
+ R R K + EG + + +A L +F + DI+ E H
Sbjct: 20 LARRNFRGKDRLFLAEGPQAVREAAGHGDTLVELFATAEAAERYADIVSE-AHAAGARVH 78
Query: 58 RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
D + S VTP G++G+ P A I A L V ++RDPGN G++LR
Sbjct: 79 LADETVVADISTTVTPQGLVGVCRFLDTPFAEILAARPRLVAVLAHVRDPGNAGTVLRCA 138
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A GA VV + VD+Y+ K +RA+
Sbjct: 139 DAAGAEAVVLTDASVDLYNPKAVRAS 164
>gi|237785425|ref|YP_002906130.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
gi|237758337|gb|ACR17587.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
Length = 324
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFF--SQWD---ILKELPLPEDVPQHR 58
+KS +R++K +L +EG + AL A + K VF S WD L+EL + VP
Sbjct: 39 LKSAGRRKEKKFL-VEGFNGVEGALSAGVA-KEVFVADSAWDKFSTLRELAREQHVPVSV 96
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIAS-IDPASLPLNIVCDNI--RDPGNMGSILR 115
+D K S+ V+ G+ +L + + S I+ A +V I DPGN G+ +R
Sbjct: 97 IDDKAASALSETVSHSGVCATCQLLSTSVESCINRARRGRGLVAVGIDMSDPGNAGTFIR 156
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
AVGA VV VDI++ K +R+AA
Sbjct: 157 TADAVGADCVVFLGNSVDIHNGKTVRSAA 185
>gi|312870534|ref|ZP_07730652.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
gi|311093931|gb|EFQ52257.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
Length = 257
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++++K R + G +L+G ++ +A+KA +L+ + + + L + V
Sbjct: 18 LQTKKFRRQSGEYLLDGWHLVNEAVKAGNQLRQLIGTADQLAAHQDLVARAAEAYVVTPE 77
Query: 64 I-QLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNI-----VCDNIRDPGNMGSILRVC 117
I Q +D VTP GI + +LP D +P NI + D ++DPGN+G+++R
Sbjct: 78 IMQHVTDTVTPQGIAAVVDLP-------DAHRVPANIQGAWLLLDRVQDPGNVGTMVRTA 130
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRA 142
A G VV DI+ KV+R+
Sbjct: 131 DAAGFTGVVVGDRSADIFGPKVVRS 155
>gi|375254589|ref|YP_005013756.1| TrmH family RNA methyltransferase [Tannerella forsythia ATCC 43037]
gi|363407267|gb|AEW20953.1| RNA methyltransferase, TrmH family [Tannerella forsythia ATCC
43037]
Length = 254
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW-DILKELPLPEDVPQHRVDYK 62
++ +K R+ + + EG +++ D +KA + S W ++ +L E + + +
Sbjct: 13 LEMKKYRDAQQLFVAEGNKLVTDLMKAFECKWLAARSSWVEVQPDLRTGEVIEVRDDEMR 72
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
I L L TP ++ +F P + + DP S L + D I+DPGN+G+I+R+ G
Sbjct: 73 KISL---LKTPQEVLAVFSRPTYRLDEADPNS-QLILALDGIQDPGNLGTIIRLADWFGI 128
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
VVCS D + K ++A
Sbjct: 129 AHVVCSTDTADAFGPKAVQAT 149
>gi|342732159|ref|YP_004770998.1| TrmH family RNA methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|417959268|ref|ZP_12602111.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-1]
gi|417964248|ref|ZP_12606005.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-4]
gi|417969134|ref|ZP_12610093.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-co]
gi|418016440|ref|ZP_12656005.1| putative rRNA (adenosine-2'-O-)-methyltransferase [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|418372412|ref|ZP_12964504.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342329614|dbj|BAK56256.1| TrmH family RNA methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506775|gb|EGX29069.1| putative rRNA (adenosine-2'-O-)-methyltransferase [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|380333783|gb|EIA24299.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-1]
gi|380338382|gb|EIA27281.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-co]
gi|380342081|gb|EIA30526.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|380343125|gb|EIA31537.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-4]
Length = 260
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 14/148 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+K++K R K ++EG R + +A+K N ++K + S+ K+ + + Q ++ N
Sbjct: 18 LKNKKNRCKSRLYLIEGIRFVEEAIKNNCEIKYIVVSESK--KDYIIDKFEFQDKL--FN 73
Query: 64 IQLWSDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
+ ++SD + GII + I + + + D I+DPGN+G+I+R
Sbjct: 74 VMVFSDELFGKIKQTENTQGIIACLRIKDTIIKF--NFNEGIYFLIDKIQDPGNLGTIIR 131
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
AV A V+ +G VD+Y++KV+RA
Sbjct: 132 TAVAVNALGVILMKGSVDLYNDKVLRAT 159
>gi|237718577|ref|ZP_04549058.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229452037|gb|EEO57828.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|295084275|emb|CBK65798.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
Length = 254
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+++ + EG +++ D L + W +E P + V ++
Sbjct: 15 LELKKIRKEERVFLAEGPKLVGDLLGHFPCRFLAATPSW--FQEHPGIDASELVEVSQED 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASL--PLNIVCDNIRDPGNMGSILRVCAAVG 121
+ S L TP ++ IFE P + ++DP ++ L + D+++DPGN+G+I+R+ G
Sbjct: 73 LSRASLLKTPQQVLAIFEQPQY---TLDPEAVRSSLCLALDDVQDPGNLGTIIRLADWFG 129
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++CS+ VD+Y+ K I+A
Sbjct: 130 IEHIICSQNTVDVYNPKTIQAT 151
>gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599]
gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599]
Length = 271
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 31/158 (19%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW---------------DILKELPL 50
SRK RE++ ++EG ++ +ALK+ ++ V + Q + ++ +
Sbjct: 22 SRKGREEQQRFLVEGAHLVEEALKSGAEVVTVIYDQQRDMDPACQRALANHPEAVQVIAA 81
Query: 51 PEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIAS------IDPASLPLNIVCDNI 104
PE V + S+ +P GI+ + A A + SL L + D I
Sbjct: 82 PETV---------LAKLSETKSPQGIVAEVKKTAADWAKWVDQKREEQGSLLL-LFLDEI 131
Query: 105 RDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
+DPGN+G+ILR A VV G VDIY+ KV+RA
Sbjct: 132 QDPGNLGTILRTAEAAAIDGVVLGSGSVDIYNGKVVRA 169
>gi|116250180|ref|YP_766018.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
gi|115254828|emb|CAK05902.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae
3841]
Length = 271
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K RE+ G + EG +++IDA++ ++ + +++ K PL E + V
Sbjct: 18 LTNKKSREESGTFLAEGLKLVIDAIELGWAIRTLVYAK--AAKGKPLVEQMAAKTVASGG 75
Query: 64 IQLW-SDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
+ L S+ V P ++GIFE P+ I + + D +RDPGN+G+I+
Sbjct: 76 LVLEVSEKVIASITRRDNPQMVVGIFEQRWRPLKGIRLSEGETWVALDRVRDPGNLGTII 135
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRA 142
R A GA ++ D + + +RA
Sbjct: 136 RTADAAGASGIILLGETTDPFSLETVRA 163
>gi|452748392|ref|ZP_21948172.1| rRNA methylase [Pseudomonas stutzeri NF13]
gi|452007798|gb|EME00051.1| rRNA methylase [Pseudomonas stutzeri NF13]
Length = 243
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-VPQHRVDYK 62
+ +K R + G ++EG+ + ++ KA L+ + S+ + + H + +
Sbjct: 9 LHQKKYRAEFGHFLVEGEHLALELQKAALRNPQLERSELYVTSAYEHWQSPFRTHLISDR 68
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGA 122
+ +D TP GI+ + +PA + P + I I+DPGN+G+ILR A G
Sbjct: 69 QMAQIADTKTPQGIVALVPMPATGASIAAPVAGERAIYLHEIQDPGNLGTILRTLAWFGN 128
Query: 123 RQVVCSRGCVDIYDNKVIRAA 143
+ + S G VD Y+ K +R++
Sbjct: 129 FRCLLSPGSVDPYNPKAVRSS 149
>gi|419829412|ref|ZP_14352898.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-1A2]
gi|419832382|ref|ZP_14355844.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-61A2]
gi|422916584|ref|ZP_16950919.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-02A1]
gi|423818101|ref|ZP_17715522.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-55C2]
gi|423850060|ref|ZP_17719311.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-59A1]
gi|423879183|ref|ZP_17722916.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-60A1]
gi|423997005|ref|ZP_17740266.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-02C1]
gi|424015709|ref|ZP_17755554.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-55B2]
gi|424018648|ref|ZP_17758446.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-59B1]
gi|424624191|ref|ZP_18062666.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-50A1]
gi|424628686|ref|ZP_18066989.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-51A1]
gi|424632722|ref|ZP_18070835.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-52A1]
gi|424635809|ref|ZP_18073828.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-55A1]
gi|424639724|ref|ZP_18077618.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-56A1]
gi|424647785|ref|ZP_18085459.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-57A1]
gi|443526571|ref|ZP_21092650.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-78A1]
gi|341639848|gb|EGS64455.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-02A1]
gi|408015038|gb|EKG52640.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-50A1]
gi|408020516|gb|EKG57824.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-52A1]
gi|408026274|gb|EKG63290.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-56A1]
gi|408026654|gb|EKG63651.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-55A1]
gi|408036288|gb|EKG72730.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-57A1]
gi|408058454|gb|EKG93254.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-51A1]
gi|408620997|gb|EKK94000.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-1A2]
gi|408636414|gb|EKL08562.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-55C2]
gi|408643403|gb|EKL15128.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-60A1]
gi|408644527|gb|EKL16211.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-59A1]
gi|408651026|gb|EKL22282.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-61A2]
gi|408854058|gb|EKL93828.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-02C1]
gi|408861687|gb|EKM01260.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-55B2]
gi|408869654|gb|EKM08948.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-59B1]
gi|443455134|gb|ELT18922.1| spoU rRNA Methylase family protein [Vibrio cholerae HC-78A1]
Length = 244
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ + LK+ +F + + + +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELTNSTLKVHHIFATAEFLAEHAQALAGFECIEATLDD 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S LV+ I + E+P+ + P + L I D + DPGN+G+I+RV G
Sbjct: 73 LTKVSTLVSNNAAIAVVEIPSIEV----PKAQGLMIGLDGVSDPGNLGTIIRVADWYGIS 128
Query: 124 QVVCSRGCVDIYDNKVIRA 142
++ S+ C D Y+ K I A
Sbjct: 129 HIIASQDCADPYNPKTISA 147
>gi|269961010|ref|ZP_06175379.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834229|gb|EEZ88319.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 285
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 24/150 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ ++L +K +F E + QH +
Sbjct: 54 LGQKKQRKAHGLFLVQGEKNVLELANSSLTVKQIF----------ATAEFLEQHNQELNG 103
Query: 64 IQL----------WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
+ S LV+ I + E+P + P + L I D + DPGN+G+I
Sbjct: 104 FECIEASLDDLTKASTLVSNNAAIAVVEIPNVTV----PQAKGLMIALDGVSDPGNLGTI 159
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+RV G + ++ S C D Y+ K I A
Sbjct: 160 IRVADWYGIKHIIASTDCADPYNPKTISAT 189
>gi|156973799|ref|YP_001444706.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
gi|388602035|ref|ZP_10160431.1| RNA methyltransferase, TrmH family [Vibrio campbellii DS40M4]
gi|444426368|ref|ZP_21221787.1| RNA methyltransferase, TrmH family [Vibrio campbellii CAIM 519 =
NBRC 15631]
gi|156525393|gb|ABU70479.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
gi|444240402|gb|ELU51944.1| RNA methyltransferase, TrmH family [Vibrio campbellii CAIM 519 =
NBRC 15631]
Length = 244
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 24/150 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ ++L +K +F + E + QH +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSSLSVKQIFAT----------AEFLEQHSHELNG 62
Query: 64 IQL----------WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
+ S LV+ I + E+P + P + L I D + DPGN+G+I
Sbjct: 63 FECIEASLDELTKASTLVSNNAAIAVVEIPNVTV----PQAKGLMIALDGVSDPGNLGTI 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+RV G + ++ S C D Y+ K I A
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISAT 148
>gi|423225739|ref|ZP_17212206.1| hypothetical protein HMPREF1062_04392 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392632084|gb|EIY26050.1| hypothetical protein HMPREF1062_04392 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 253
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 23/137 (16%)
Query: 28 LKANLKLKMVFFSQW-----DILKELP------LPEDVPQH---------RVDYKNIQLW 67
LK N K + VF ++ D+L P PE + QH V +++
Sbjct: 16 LKKNRKTEKVFLAEGPKLVGDLLGHFPCRFLAATPEWLSQHPKLPVEDVSEVSEEDLSRA 75
Query: 68 SDLVTPPGIIGIFELPAHPI-ASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
S L TP ++ +FE P + AS+ SL L + D+++DPGN+G+I+R+ G +
Sbjct: 76 SLLKTPQQVLAVFEQPEYETDASVISHSLCLAL--DDVQDPGNLGTIIRLADWFGIEHIF 133
Query: 127 CSRGCVDIYDNKVIRAA 143
CS VD+Y+ K ++A
Sbjct: 134 CSPNTVDVYNPKTVQAT 150
>gi|343501935|ref|ZP_08739801.1| RNA methyltransferase, TrmH family [Vibrio tubiashii ATCC 19109]
gi|418480282|ref|ZP_13049344.1| RNA methyltransferase, TrmH family [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342816287|gb|EGU51188.1| RNA methyltransferase, TrmH family [Vibrio tubiashii ATCC 19109]
gi|384572057|gb|EIF02581.1| RNA methyltransferase, TrmH family [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 244
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS---QWDILKELPLPEDVPQHRVD 60
+ +KQR+ G +++G++ +++ + L +K VF + D EL E +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSALTVKQVFATPEFLADYHTELSGFECI---EAS 69
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
+ S LV+ I + E+P P + L I D + DPGN+G+I+RV
Sbjct: 70 LDELTKASTLVSNNAAIAVVEIPTVET----PKAQGLMIALDGVSDPGNLGTIIRVADWY 125
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G + +V S C D Y+ K I A
Sbjct: 126 GIKHIVASTDCADPYNPKTISAT 148
>gi|373106381|ref|ZP_09520684.1| hypothetical protein HMPREF9623_00348 [Stomatobaculum longum]
gi|371652756|gb|EHO18164.1| hypothetical protein HMPREF9623_00348 [Stomatobaculum longum]
Length = 263
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLW-- 67
R ++G +EG R+ ++A A ++ ++ + E + E + + ++
Sbjct: 23 RAERGLFPVEGVRMFLEAPAAEIE-ELYVSESFAARAEGEVREKIEALGAETVADNIFAK 81
Query: 68 -SDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
SD TP G++ + + +A + + ++++DPGN+G++LR G ++
Sbjct: 82 MSDTKTPQGVLALLRMQRKSLAEVLAKGASCFLAVESLQDPGNLGTMLRAGEGAGLSAIL 141
Query: 127 CSRGCVDIYDNKVIRA 142
+RG VDIY+ KVIRA
Sbjct: 142 ANRGTVDIYNPKVIRA 157
>gi|298484410|ref|ZP_07002568.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
gi|299145878|ref|ZP_07038946.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
gi|298269434|gb|EFI11037.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
gi|298516369|gb|EFI40250.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
Length = 254
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+++ + EG +++ D L + W +E P + V ++
Sbjct: 15 LELKKIRKEERVFLAEGPKLVGDLLGHFPCRFLAATPSW--FQEHPGIDASELVEVSQED 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASL--PLNIVCDNIRDPGNMGSILRVCAAVG 121
+ S L TP ++ IFE P + ++DP ++ L + D+++DPGN+G+I+R+ G
Sbjct: 73 LSRASLLKTPQQVLAIFEQPQY---TLDPEAVRSSLCLALDDVQDPGNLGTIIRLADWFG 129
Query: 122 ARQVVCSRGCVDIYDNKVIRAA 143
++CS+ VD+Y+ K I+A
Sbjct: 130 IEHIICSQNTVDVYNPKTIQAT 151
>gi|431033276|ref|ZP_19491122.1| RNA methyltransferase [Enterococcus faecium E1590]
gi|430564377|gb|ELB03561.1| RNA methyltransferase [Enterococcus faecium E1590]
Length = 254
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 17 MLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKNIQLWSDLVT 72
+LEG ++ +A ++ ++K +F +Q +KE L +++ V + + SDL T
Sbjct: 31 LLEGFHLIEEAASSDAEIKELFVTQRG-MKEWGDWLAANKEISIFLVSDEVMDAVSDLPT 89
Query: 73 PPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCV 132
P GI+ + L A L L DN++DPGN+G+++R A V+ +G
Sbjct: 90 PQGILAVMALTAEGTPDFSGGWLLL----DNVQDPGNVGTMIRTADAFDMAGVLLGKGTA 145
Query: 133 DIYDNKVIRA 142
DIY KV+R+
Sbjct: 146 DIYSTKVLRS 155
>gi|423299987|ref|ZP_17278012.1| hypothetical protein HMPREF1057_01153 [Bacteroides finegoldii
CL09T03C10]
gi|408473796|gb|EKJ92318.1| hypothetical protein HMPREF1057_01153 [Bacteroides finegoldii
CL09T03C10]
Length = 255
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
++ +K R+++ + EG +++ D L+ + S W L+ P V +
Sbjct: 15 LEQKKTRKEERVFLAEGPKLVGDLLEYFPCRFLAATSLW--LQSHPNIYADEIAEVSQEE 72
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
+ S L TP ++ +FE P + + D A L + D+++DPGN+G+I+R+ G
Sbjct: 73 LSRASLLKTPQQVLAVFEQPKYTLTP-DVARHSLCLALDDVQDPGNLGTIIRLADWFGIE 131
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++CS+ VD+Y+ K ++A
Sbjct: 132 DIICSQNTVDVYNPKTVQAT 151
>gi|118468977|ref|YP_888083.1| TrmH family RNA methyltransferase [Mycobacterium smegmatis str. MC2
155]
gi|399988106|ref|YP_006568456.1| 23S rRNA methyltransferase TsnR [Mycobacterium smegmatis str. MC2
155]
gi|118170264|gb|ABK71160.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
str. MC2 155]
gi|399232668|gb|AFP40161.1| 23S rRNA methyltransferase TsnR [Mycobacterium smegmatis str. MC2
155]
Length = 252
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R + + EG ++ AL+ L + VF ++ + + L D P V + + SD
Sbjct: 13 RRRAARFLAEGPNLVEAALRRGL-VSEVFATEAALDRFGALLADAPVTPVTERAAKALSD 71
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
VTP G++ + LP + + L V + +PGN G+++RV A+GA VV +
Sbjct: 72 TVTPVGLVAVCRLPEVSLDDVLAGPAGLIAVPVQLSEPGNAGTLIRVADAMGAAAVVLAG 131
Query: 130 GCVDIYDNKVIRAAA 144
VD Y++K +RA+A
Sbjct: 132 NSVDPYNSKCLRASA 146
>gi|402308439|ref|ZP_10827448.1| RNA methyltransferase, TrmH family [Prevotella sp. MSX73]
gi|400375883|gb|EJP28778.1| RNA methyltransferase, TrmH family [Prevotella sp. MSX73]
Length = 276
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 15/149 (10%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R+ +G + EG +I+ + L + +W K P+ ++ V + ++
Sbjct: 22 KKNRKAEGKFVAEGPKIVGELLAVGQASLLAATREW-FEKNSPISSSTEKYEVTEEELRK 80
Query: 67 WSDLVTPPGIIGIFELP------------AHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
S L P +IG+F++P A+ ++ +SL L + D ++DPGN+G+I+
Sbjct: 81 ISFLQHPQMVIGVFDIPNKHSTPPSITQKAYTASAAWDSSLILAL--DGVQDPGNLGTII 138
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R+ G +VCS D Y+ K ++A
Sbjct: 139 RIADWFGITDIVCSEDTADAYNPKTVQAT 167
>gi|291563819|emb|CBL42635.1| rRNA methylases [butyrate-producing bacterium SS3/4]
Length = 260
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 16/148 (10%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQW--------DILKELPLPEDVPQ 56
K + R ++G ++EG R+ + K ++K ++ S+ IL E P E V
Sbjct: 18 KKARARNEQGLFVVEGVRMAAELPKD--QVKSIYVSETFAKNPENAAILAEYPGYELVSD 75
Query: 57 HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNI-VCDNIRDPGNMGSILR 115
+ SD TP G++ + ++ + + + P ++ V +N++DPGN+G+ILR
Sbjct: 76 SV-----FAVMSDTQTPQGVLALVRQFSYGMDELLKSDRPAHLMVLENLQDPGNLGTILR 130
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
G ++ SR VDIY+ KVIR+
Sbjct: 131 AGEGAGITGLIMSRDTVDIYNPKVIRST 158
>gi|441210726|ref|ZP_20974724.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium smegmatis
MKD8]
gi|440626656|gb|ELQ88484.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium smegmatis
MKD8]
Length = 252
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSD 69
R + + EG ++ AL+ L + VF ++ + + L D P V + + SD
Sbjct: 13 RRRAARFLAEGPNLVEAALRRGL-VSEVFATEAALDRFGALLADAPVTPVTERAAKALSD 71
Query: 70 LVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
VTP G++ + LP + + L V + +PGN G+++RV A+GA VV +
Sbjct: 72 TVTPVGLVAVCRLPEVSLDDVLAGPAGLIAVPVQLSEPGNAGTLIRVADAMGAAAVVLAG 131
Query: 130 GCVDIYDNKVIRAAA 144
VD Y++K +RA+A
Sbjct: 132 NSVDPYNSKCLRASA 146
>gi|357013574|ref|ZP_09078573.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus elgii B69]
Length = 277
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKA-NLKLKMVFFSQWDILKELPLPEDVPQHRVD---- 60
SRK R+K+G ++EG ++ +AL++ +L +++ ++ L ED V+
Sbjct: 31 SRKGRDKQGRFLIEGVHLVQEALRSVDLVPEVLVYASDKKQAIAGLLEDAATKGVECVPV 90
Query: 61 -YKNIQLWSDLVTPPGIIGIFELPAHPIASID--PASLP--LNIVCDNIRDPGNMGSILR 115
+ +D TP + + +P P D AS P L +V D I+DPGN+G+I+R
Sbjct: 91 TEAVLAKCTDTETPQPVFAV--VPKLPWRGSDLLAASEPNGLVVVIDGIQDPGNLGTIIR 148
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA V+ +G VD+Y+ K +R+
Sbjct: 149 SADAVGASGVLLGKGTVDLYNPKTVRST 176
>gi|424047032|ref|ZP_17784593.1| spoU rRNA Methylase family protein [Vibrio cholerae HENC-03]
gi|408884669|gb|EKM23405.1| spoU rRNA Methylase family protein [Vibrio cholerae HENC-03]
Length = 244
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 24/150 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +KQR+ G +++G++ +++ ++L +K +F + E + QH +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSSLTVKQIFAT----------AEFLEQHNHELNG 62
Query: 64 IQL----------WSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSI 113
+ S LV+ I + E+P + P + L I D + DPGN+G+I
Sbjct: 63 FECIEASLDDLTKASTLVSNNAAIAVVEIPNVTV----PQAKGLMIALDGVSDPGNLGTI 118
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+RV G + ++ S C D Y+ K I A
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISAT 148
>gi|332882239|ref|ZP_08449869.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332679862|gb|EGJ52829.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 242
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHR---VD 60
+ +K R + ++EGK+ + + L+A +++ ++ VPQH V
Sbjct: 13 LHHKKYRNELNLFIVEGKKSINEFLQAGYTPQLLIATE-------AFTTSVPQHLITPVS 65
Query: 61 YKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAV 120
++ S L P + +F+ P H + + L DN++DPGN+G+I+R+C
Sbjct: 66 KDELRKVSTLQNPDEGLAVFQQPKHKGILQEGVIVAL----DNVQDPGNLGTIIRLCDWF 121
Query: 121 GARQVVCSRGCVDIYDNKVIRAA 143
G ++C+ VD Y+ KV++A
Sbjct: 122 GVETLLCNTQTVDCYNPKVVQAT 144
>gi|332184962|ref|ZP_08386711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Sphingomonas sp. S17]
gi|332014686|gb|EGI56742.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Sphingomonas sp. S17]
Length = 270
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ----WDILKELPLPEDVPQHRV 59
++ ++ R++ + EG RIL +A + ++FF++ ++++L ++
Sbjct: 19 LRDKRHRKQARQFLAEGLRILTEAKETGRLPTLLFFAKPSADHPLVRQLVRAVELAGGEA 78
Query: 60 DYKNIQLWSDLV---TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRV 116
+ S L P ++G+FE + +D +S + +V + +RDPGN+G+ILR
Sbjct: 79 IETTPDILSKLSGKDNPQAVVGVFEELGTTLDMLDRSSSGIWLVAERLRDPGNLGTILRT 138
Query: 117 CAAVGARQVVCSRGCVDIYDNKVIRAA 143
AVGA ++ CVD + + +RA+
Sbjct: 139 GDAVGAGGLILVGECVDPFSVEAVRAS 165
>gi|91775460|ref|YP_545216.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
gi|91709447|gb|ABE49375.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
Length = 260
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 8 KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDVPQHRVDYKN 63
++R K +L+G +L ++ K++ ++ + E L + DVP
Sbjct: 25 RERRKHNETLLDGPHLLTAYIERFGMPKLLVTAEGESTNEVVGLLQVLADVPTVMFTTLM 84
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
S + TP GI+ + ++P P+ P ++ ++I+DPGN+GS+LR AA G
Sbjct: 85 FAELSPVATPTGILALVDIPQQPV----PEQPDFLLMLEDIQDPGNLGSMLRSAAAAGVE 140
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
V S GC D + K +R
Sbjct: 141 VVYLSLGCADAWSPKALRGG 160
>gi|78042655|ref|YP_360402.1| TrmH family RNA methyltransferase [Carboxydothermus
hydrogenoformans Z-2901]
gi|77994770|gb|ABB13669.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
hydrogenoformans Z-2901]
Length = 258
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 23/145 (15%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQ--WDILKELPLPEDVPQHRVDYKNIQLW 67
R K G ++EG++++ + + N LK + S+ W K D ++ QL+
Sbjct: 26 RRKNGMFIVEGEKLVFELITDNWPLKYLVVSESYWQAKKI-----DDDGVKIVVLTDQLF 80
Query: 68 ---SDLVTPPGIIGIFELPAHPIASIDPASLPLN-----IVCDNIRDPGNMGSILRVCAA 119
S+LVTPPGI+ + A + S P +V D ++DPGN+G++LR
Sbjct: 81 NKISELVTPPGILAV--------ACMKSLSWPAGKDGAFLVLDGLQDPGNVGTLLRAAFG 132
Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
G V+ VDIY+ KVIRA+A
Sbjct: 133 FGVSGVILLPPAVDIYNPKVIRASA 157
>gi|350566208|ref|ZP_08934900.1| 23S rRNA methyltransferase [Peptoniphilus indolicus ATCC 29427]
gi|348663015|gb|EGY79636.1| 23S rRNA methyltransferase [Peptoniphilus indolicus ATCC 29427]
Length = 249
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 11/146 (7%)
Query: 3 YMKS---RKQREKKGWLMLEGKRILIDALKANL-KLKMVFFSQWDILKELPLPEDVPQHR 58
Y+KS +K R+K+ +EG +L +AL+ + K V S++ L EL + ++ +
Sbjct: 14 YLKSLQQKKYRDKENLFYIEGFVVLNEALQYKIPKFIAVSESKFSELLELNIKAEI--YI 71
Query: 59 VDYKNIQLWSDLVTPPGIIGIFE-LPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
+ K + SD V G+I FE + + I SI I+ D++RDPGN+G I+R
Sbjct: 72 IADKIFKGLSDTVNSQGVIAYFEQIHSRGIESIRDGKY---ILLDDVRDPGNVGGIIRSA 128
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
G + ++ + CV++Y+ K+IR+
Sbjct: 129 DGFGVK-LIMTPECVELYNPKLIRST 153
>gi|153955807|ref|YP_001396572.1| methyltransferase [Clostridium kluyveri DSM 555]
gi|219856174|ref|YP_002473296.1| hypothetical protein CKR_2831 [Clostridium kluyveri NBRC 12016]
gi|146348665|gb|EDK35201.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
gi|219569898|dbj|BAH07882.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 266
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKE----LPLPEDV--PQHRVDYKN 63
R ++ ++EG R + +A+ + + +F S++ +E L V P + V +
Sbjct: 24 RIRRKEFIIEGFRFVKEAINSEFYISQIFLSEYFTNREERFFLERNNKVKCPIYFVTDEI 83
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGAR 123
++ S P GII + + I I+ D I+DPGNMG+I+R A GA
Sbjct: 84 LRSISCTENPQGIIAVVKNKELNIKD----EQGFYILADRIQDPGNMGTIIRSAHASGAL 139
Query: 124 QVVCSRGCVDIYDNKVIRAA 143
++ ++G VD+Y+ K +RA
Sbjct: 140 GIITTKGTVDVYNEKTLRAT 159
>gi|315608080|ref|ZP_07883073.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
gi|315250549|gb|EFU30545.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
Length = 276
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 15/149 (10%)
Query: 7 RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQL 66
+K R+ +G + EG +I+ + L + +W K P+ ++ V + ++
Sbjct: 22 KKNRKAEGKFVAEGPKIVGELLAVGQASLLAATREW-FEKNSPISSSTEKYEVTEEELRK 80
Query: 67 WSDLVTPPGIIGIFELP------------AHPIASIDPASLPLNIVCDNIRDPGNMGSIL 114
S L P +IG+F++P A+ ++ +SL L + D ++DPGN+G+I+
Sbjct: 81 ISFLQHPQMVIGVFDIPNKHSTPPSITQEAYTASAAWDSSLILAL--DGVQDPGNLGTII 138
Query: 115 RVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
R+ G +VCS D Y+ K ++A
Sbjct: 139 RIADWFGITDIVCSEDTADAYNPKTVQAT 167
>gi|282859569|ref|ZP_06268674.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
gi|424900998|ref|ZP_18324540.1| rRNA methylase [Prevotella bivia DSM 20514]
gi|282587797|gb|EFB92997.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
gi|388593198|gb|EIM33437.1| rRNA methylase [Prevotella bivia DSM 20514]
Length = 252
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 24/144 (16%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ ++K REK + EG +++ D L+A + + +F ED+ ++
Sbjct: 27 LDTKKGREKANLFIAEGPKVVNDLLQAGFEAEEIF-------------EDI-------ED 66
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPASL----PLNIVCDNIRDPGNMGSILRVCAA 119
I+ + L P ++G+F+L P D + L++ D ++DPGN+G+I+R+
Sbjct: 67 IKKITFLQHPQSMLGVFKLKQVPNLQEDVFTFFPSQKLSLALDGVQDPGNLGTIIRIADW 126
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G + CS VD ++ KV++A
Sbjct: 127 FGIENIYCSPNTVDCWNPKVVQAT 150
>gi|153834733|ref|ZP_01987400.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
gi|148868872|gb|EDL67936.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
Length = 244
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDIL----KELPLPEDVPQHRV 59
+ +KQR+ G +++G++ +++ ++L +K +F + D L +EL E +
Sbjct: 13 LGQKKQRKAHGLFLVQGEKNVLELANSSLSVKQIF-ATADFLEQHSQELNGFECI---EA 68
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
+ S LV+ I + E+P + P + L I D + DPGN+G+I+RV
Sbjct: 69 SLDELTKASTLVSNNAAIAVVEIPNVTV----PQAKGLMIALDGVSDPGNLGTIIRVADW 124
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G + ++ S C D Y+ K I A
Sbjct: 125 YGIKHIIASTDCADPYNPKTISAT 148
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,418,871,417
Number of Sequences: 23463169
Number of extensions: 102336636
Number of successful extensions: 190558
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2899
Number of HSP's successfully gapped in prelim test: 442
Number of HSP's that attempted gapping in prelim test: 186298
Number of HSP's gapped (non-prelim): 3412
length of query: 144
length of database: 8,064,228,071
effective HSP length: 108
effective length of query: 36
effective length of database: 9,825,173,115
effective search space: 353706232140
effective search space used: 353706232140
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 71 (32.0 bits)