BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6779
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HC36|RMTL1_HUMAN RNA methyltransferase-like protein 1 OS=Homo sapiens GN=RNMTL1 PE=1
SV=2
Length = 420
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA KM FFS+ + LKELP+ + V +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P H P + SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>sp|Q6GPJ4|RMTL1_XENLA RNA methyltransferase-like protein 1 OS=Xenopus laevis GN=rnmtl1
PE=2 SV=1
Length = 419
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 102/146 (69%), Gaps = 8/146 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH---RVDY 61
KS+K R++ G ++LEG+R+L DAL + L+ +FFS+ D LKE P P+ + + +V++
Sbjct: 107 KSKKFRDRHGQVLLEGQRLLTDALDSGAVLQTLFFSRVDYLKEFP-PDKLRKTNLIKVNF 165
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASI----DPASLPLNIVCDNIRDPGNMGSILRVC 117
+NI++WSDLVTP G++GIF P H + +LPL+++CDNIRDPGN+G+ILR
Sbjct: 166 ENIKIWSDLVTPQGLMGIFAKPDHVKMTYPDTQTKHTLPLSLICDNIRDPGNLGTILRCA 225
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V+ ++GCVD ++ KV+RA
Sbjct: 226 AGAGCSKVLLTKGCVDAWEPKVLRAG 251
>sp|Q5ND52|RMTL1_MOUSE RNA methyltransferase-like protein 1 OS=Mus musculus GN=Rnmtl1 PE=2
SV=1
Length = 418
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
M +KSR REK+G ++LEG+R++ DALKA K FFS+ + +KELP+ + DV +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIK 167
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS-----LPLNIVCDNIRDPGNMGSI 113
V +++I+ WSDLVTP GI+GIF P P+ P + LPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKP-DPVKMTYPETPLHHTLPLVLICDNLRDPGNLGTI 226
Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
LR A G +V+ ++GCVD ++ KV+RA
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
>sp|A4QNL8|RMTL1_XENTR RNA methyltransferase-like protein 1 OS=Xenopus tropicalis
GN=rnmtl1 PE=2 SV=1
Length = 415
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 100/146 (68%), Gaps = 8/146 (5%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH---RVDY 61
KS+K R++ G ++LEG+R+L DAL++ L+ +FFS+ D LK P P+ + + +V++
Sbjct: 107 KSKKFRDRHGQVLLEGRRLLTDALESGAVLQTLFFSRVDYLKLFP-PDKLRKANLIKVNF 165
Query: 62 KNIQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSILRVC 117
NI++WSD+V P G++GIF P H S +LPL+++CDNIRDPGN+G+ILR
Sbjct: 166 DNIKIWSDVVAPQGLMGIFAKPDHEKISYPTTQTKHTLPLSLICDNIRDPGNLGTILRCA 225
Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V+ ++GCVD ++ KV+RA
Sbjct: 226 AGAGCNKVLLTKGCVDAWEPKVLRAG 251
>sp|Q566V3|RML1A_DANRE RNA methyltransferase-like protein 1A OS=Danio rerio GN=rnmtl1a
PE=2 SV=1
Length = 435
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 97/145 (66%), Gaps = 6/145 (4%)
Query: 5 KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLP--EDVPQHRVDYK 62
+SR R+K+G ++LEG+R++ DAL A +M+FFS + L+ELPL + +V Y+
Sbjct: 131 RSRAFRDKEGKVLLEGRRLICDALSAGASPQMIFFSLLERLQELPLDKLQQAKLIKVKYE 190
Query: 63 NIQLWSDLVTPPGIIGIFELPAHPIASIDP----ASLPLNIVCDNIRDPGNMGSILRVCA 118
+I+LWSDLVTP G+I IF P + S+PL ++CDN+RD GN+G+ILR A
Sbjct: 191 DIKLWSDLVTPQGLIAIFSKPDASRLTFPKDARLQSVPLFLICDNVRDAGNLGTILRCAA 250
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
A G +V+ S+GCVD ++ KV+R+A
Sbjct: 251 AAGGDRVLLSKGCVDAWEPKVLRSA 275
>sp|Q9VW14|RMTL1_DROME RNA methyltransferase-like protein 1 homolog OS=Drosophila
melanogaster GN=CG14100 PE=2 SV=1
Length = 407
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 95/158 (60%), Gaps = 15/158 (9%)
Query: 1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ---- 56
+ ++SRK+R+K +++EG+R++ +AL+ LK++++ FSQ D L + V Q
Sbjct: 125 LTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEVLLFSQKDQLALVKEEVGVAQVETG 184
Query: 57 ---HRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPAS--------LPLNIVCDNIR 105
++V +++ WS LVTPPG++ IF+ P+ + A P+ +VCDNIR
Sbjct: 185 TKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQRLGSQPFPITVVCDNIR 244
Query: 106 DPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
+P N+GSI+R CAA+ QVV + GC D +++K +R
Sbjct: 245 EPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGG 282
>sp|A1L2E4|RML1B_DANRE RNA methyltransferase-like protein 1B OS=Danio rerio GN=rnmtl1b
PE=2 SV=2
Length = 445
Score = 106 bits (265), Expect = 3e-23, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 6 SRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQH--RVDYKN 63
S+K RE + ++LEGK ++ AL A + + ++FS D L+ELPL + + +V ++
Sbjct: 136 SKKLREHQ--VVLEGKHLVCSALDAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMED 193
Query: 64 IQLWSDLVTPPGIIGIFELPAHPIASIDPA----SLPLNIVCDNIRDPGNMGSILRVCAA 119
Q+WS+L T II IF+ P + ++PL ++CD +RDPGN+GS+LR AA
Sbjct: 194 AQVWSELDTSQEIIAIFKRPEASRLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAA 253
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G V+ ++GCVDI++ KV+RAA
Sbjct: 254 AGCHSVLLTKGCVDIWELKVLRAA 277
>sp|P74261|Y1673_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr1673
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr1673 PE=3 SV=1
Length = 274
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKM-VFFSQWD----ILKELPLPEDVPQHR 58
+ K R+++G L+LEG +L AL F + W +L + + + V +
Sbjct: 25 LHQTKGRKQQGQLLLEGTHLLEVALAQGKGFNHGCFTAMWQEKNPVLADRLMAQSVHSYL 84
Query: 59 VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
V + + + V P G++ + P L +V + ++DPGN+G+ILR A
Sbjct: 85 VSGEVLAKMASTVNPDGVVATLTM--DQFWRSPPPHARLGLVLERLQDPGNLGTILRTAA 142
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAAA 144
A G + + CVD KV+R++A
Sbjct: 143 ATGVEGIWLTADCVDPTSPKVLRSSA 168
>sp|P94538|YSGA_BACSU Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus
subtilis (strain 168) GN=ysgA PE=3 SV=2
Length = 248
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ----HRV 59
+ ++K+R K ++EG+ ++ +ALK+ +K + + E +P D+ + +
Sbjct: 18 LHTKKERTKTNTFLIEGEHLVEEALKSPGIVKEIL-----VKDETRIPSDLETGIQCYML 72
Query: 60 DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
++ TP I + +P +A+ ++ D ++DPGN+G+++R A
Sbjct: 73 SEDAFSAVTETETPQQIAAVCHMPEEKLATARKV-----LLIDAVQDPGNLGTMIRTADA 127
Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
G VV G D ++ K +R+A
Sbjct: 128 AGLDAVVLGDGTADAFNGKTLRSA 151
>sp|Q9F5K6|AVRB_STRVR 23S rRNA (uridine(2479)-2'-O)-methyltransferase OS=Streptomyces
viridochromogenes GN=aviRb PE=1 SV=1
Length = 287
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKN 63
+ +R +R + G ++ G R + A++ ++ + + D +EL V +
Sbjct: 29 LGNRNKRTRAGEFLVMGVRPISLAVEHGWPVRTLLY---DGQRELSKWARELLRTVRTEQ 85
Query: 64 IQLWSDLV--------TPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILR 115
I + DL+ PP ++ + E+PA + I L ++ D PGN+GSI+R
Sbjct: 86 IAMAPDLLMELGEKNEAPPEVVAVVEMPADDLDRIPVREDFLGVLFDRPTSPGNIGSIIR 145
Query: 116 VCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
A+GA ++ + D+YD K +R++
Sbjct: 146 SADALGAHGLIVAGHAADVYDPKSVRSST 174
>sp|Q06753|YACO_BACSU Putative TrmH family tRNA/rRNA methyltransferase YacO OS=Bacillus
subtilis (strain 168) GN=yacO PE=3 SV=2
Length = 249
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 20 GKRILIDALKANLKLKMVFFSQWDI------LKELPLPED-----VPQHRVDYKNIQLWS 68
GK +I+ LK++ KL ++ ++ + + EL + VP+ ++D
Sbjct: 10 GKNAVIETLKSDRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVTGQHQ 69
Query: 69 DLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
+V EL A+ + P ++ D + DP N+GSI+R AVGA +V
Sbjct: 70 GVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIV 127
>sp|P74328|Y955_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr0955
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0955 PE=3 SV=1
Length = 384
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 93 ASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
++ P+ I+ D+I DP N+G+I+R A GA+ +V + V + V++ AA
Sbjct: 214 STAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRVAGITSTVMKVAA 265
>sp|A0LHE3|RSMG2_SYNFM Ribosomal RNA small subunit methyltransferase G 2
OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=rsmG2 PE=3 SV=1
Length = 498
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 46 KELPLPEDVPQHRVDYKNIQLWSDLV------TPPGIIGIFELPAHPIASIDPA-SLPLN 98
+E+P PE P H Y+ + + TP +I + E I + DP P
Sbjct: 297 QEMPPPEGAPGHMSWYQMAPALFETLDVFGTRTPLLLIKVGE-----IETWDPVEGFPAG 351
Query: 99 I-VCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
V +DP N+G+++R AA GA QV+ R + K +RA+
Sbjct: 352 CSVLVPFQDPENVGAVIRSAAAFGAVQVILLRESAHPFHPKALRASG 398
>sp|Q7NYX3|RLMB_CHRVO 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=rlmB PE=3 SV=1
Length = 248
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 52 EDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDP----ASLPLNIVCDNIRDP 107
E+V H VD + + S G++ + + + + D + PL ++ D + DP
Sbjct: 48 ENVKLHIVDKERLDSMSGNARHQGVVAMIDASMNYVDLDDVLENLSEPPLLLILDGVTDP 107
Query: 108 GNMGSILRVCAAVGARQVVC 127
N+G+ LRV A+GA V+
Sbjct: 108 HNLGACLRVADAMGAHAVIA 127
>sp|P25270|MRM1_YEAST rRNA methyltransferase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MRM1 PE=1 SV=2
Length = 412
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 90 IDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
D PL + D I DP N+G+I+R +G +V SR
Sbjct: 235 TDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSR 274
>sp|O94631|MRM1_SCHPO rRNA methyltransferase, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mrm1 PE=3 SV=1
Length = 301
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144
PL + D I DP NMG+++R +GA+ ++ S+ V +A+A
Sbjct: 147 PLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKASA 195
>sp|Q8Y016|RLMB_RALSO 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Ralstonia
solanacearum (strain GMI1000) GN=rlmB PE=3 SV=1
Length = 249
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
PL +V D + DP N+G+ LRV A GA V+
Sbjct: 96 PLLLVLDGVTDPHNLGACLRVADAAGAHAVIA 127
>sp|P19440|GGT1_HUMAN Gamma-glutamyltranspeptidase 1 OS=Homo sapiens GN=GGT1 PE=1 SV=2
Length = 569
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 69 DLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCS 128
D + P I F +P P I P PL+ +C I G G + V A G Q+ +
Sbjct: 422 DDFSSPSITNEFGVPPSPANFIQPGKQPLSSMCPTIM-VGQDGQVRMVVGAAGGTQITTA 480
Query: 129 RGCVDIYD 136
IY+
Sbjct: 481 TALAIIYN 488
>sp|Q7VQX8|SYD_BLOFL Aspartate--tRNA ligase OS=Blochmannia floridanus GN=aspS PE=3 SV=1
Length = 576
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 103 NIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVI 140
++R+P M + + ++G + +C+ GCVD D +VI
Sbjct: 286 DLRNPIEMKDVSSIFQSLGNKLFICNAGCVDTIDTQVI 323
>sp|P52393|TSNR_STRLU rRNA (adenosine-2'-O-)-methyltransferase OS=Streptomyces laurentii
GN=tsnR PE=3 SV=1
Length = 270
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 74 PGIIGIFELP-AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV-CSRGC 131
P + GI ++P A A ++ S + ++ D ++ GN+G+I+R +A+GA +V G
Sbjct: 94 PKVFGIAKVPPAGRFADLESLSGDV-VLLDGVKIVGNIGAIVRTRSALGAAGIVLVDSGL 152
Query: 132 VDIYDNKVIRAA 143
I D ++IRA+
Sbjct: 153 GTIADRRLIRAS 164
>sp|Q743W2|Y479_MYCPA Uncharacterized tRNA/rRNA methyltransferase MAP_0479
OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 /
K-10) GN=MAP_0479 PE=3 SV=1
Length = 309
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 84 AHPIASIDPA--SLP-LNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
AHP ++ A SLP L + DNI DP N+G+I+R AA G V+
Sbjct: 145 AHPDDLLEAAAGSLPALLVALDNISDPRNLGAIVRSVAAFGGHGVL 190
>sp|B1MGY6|Y572_MYCA9 Uncharacterized tRNA/rRNA methyltransferase MAB_0572
OS=Mycobacterium abscessus (strain ATCC 19977 / DSM
44196) GN=MAB_0572 PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 81 ELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
+L A A PA L + DNI DP N+G+I+R AA G VV
Sbjct: 155 DLLARARAEAQPALL---VALDNISDPRNLGAIVRSVAAFGGHGVV 197
>sp|Q8R2L5|RT18C_MOUSE 28S ribosomal protein S18c, mitochondrial OS=Mus musculus
GN=Mrps18c PE=2 SV=1
Length = 143
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 14/49 (28%)
Query: 39 FSQWDIL---KELPLPEDVP-----------QHRVDYKNIQLWSDLVTP 73
FSQ++ + ++LP+P + P + RVDYKN+QL S ++P
Sbjct: 39 FSQFEQVTSNEDLPVPMENPYKEPLKKCVLCEKRVDYKNVQLLSQFISP 87
>sp|Q9RED7|RLMB_BURSP 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Burkholderia
sp. GN=rlmB PE=3 SV=1
Length = 247
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
PL + D + DP N+G+ LRV GA V+ R
Sbjct: 96 PLLLALDGVTDPHNLGACLRVADGAGAHAVIAPR 129
>sp|Q88DE7|RLMB_PSEPK 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
putida (strain KT2440) GN=rlmB PE=3 SV=1
Length = 248
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
PL +V D + DP N+G+ LR A GA V+
Sbjct: 97 PLILVLDGVTDPHNLGACLRTADAAGATAVI 127
>sp|P44703|Y424_HAEIN Uncharacterized tRNA/rRNA methyltransferase HI_0424 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_0424 PE=3 SV=1
Length = 351
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 99 IVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
++ DN+ + N+G +LR CA G + +V ++Y +R A
Sbjct: 210 VLLDNVNNAQNIGGVLRTCAYFGVKNIVAD-NVENLYSAASMRVA 253
>sp|A4T5L0|Y1447_MYCGI Uncharacterized tRNA/rRNA methyltransferase Mflv_1447
OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_1447
PE=3 SV=1
Length = 314
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 93 ASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
A+ L + DNI DP N+G+I+R AA G VV
Sbjct: 161 AAPALLVALDNISDPRNLGAIVRSVAAFGGHGVV 194
>sp|P21442|VINT_BPHP1 Integrase OS=Haemophilus phage HP1 GN=int PE=1 SV=1
Length = 337
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 101 CDNIRDPGNMGSILRVCAAVGAR 123
CDN R+P ++G I+R+C A GAR
Sbjct: 186 CDNSRNP-DLGLIVRICLATGAR 207
>sp|Q4L3J1|TRMHL_STAHJ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2477 PE=3 SV=1
Length = 249
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 91 DPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
D L ++ D + DP N+GSILR A G V+
Sbjct: 90 DKEGLSTVVILDGLEDPHNLGSILRTADASGVDGVI 125
>sp|A1TG08|Y5337_MYCVP Uncharacterized tRNA/rRNA methyltransferase Mvan_5337
OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
GN=Mvan_5337 PE=3 SV=1
Length = 314
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 84 AHP---IASIDPASLP-LNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
AHP +A ++P L + DNI DP N+G+I+R AA G V+
Sbjct: 148 AHPDDLLAEAKSDAMPALLVALDNISDPRNLGAIVRSVAAFGGHGVL 194
>sp|Q87VK2|RLMB_PSESM 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rlmB PE=3 SV=1
Length = 250
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
PL +V D + DP N+G+ LR A GA V+
Sbjct: 97 PLLLVLDGVTDPHNLGACLRTADAAGALAVI 127
>sp|Q8CTT9|TRMHL_STAES Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_0294 PE=3 SV=2
Length = 249
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 99 IVCDNIRDPGNMGSILRVCAAVGARQVV 126
I+ D + DP N+GSILR A G V+
Sbjct: 98 IILDGLEDPHNLGSILRTADASGVDAVI 125
>sp|Q5HRM1|TRMHL_STAEQ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP0172 PE=3
SV=1
Length = 249
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 99 IVCDNIRDPGNMGSILRVCAAVGARQVV 126
I+ D + DP N+GSILR A G V+
Sbjct: 98 IILDGLEDPHNLGSILRTADASGVDAVI 125
>sp|Q9JUU8|RLMB_NEIMA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rlmB PE=3 SV=2
Length = 250
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
PL ++ D I DP N+G+ LR A+G V+
Sbjct: 96 PLLLILDGITDPHNLGACLRTADAMGVHAVIA 127
>sp|P44906|RLMB_HAEIN 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rlmB PE=1 SV=1
Length = 246
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
PL +V D + DP N+G+ LR A GA V+
Sbjct: 95 PLLLVLDGVTDPHNLGACLRTADAAGAVAVI 125
>sp|Q82XD1|RLMB_NITEU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=rlmB PE=3
SV=1
Length = 260
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 97 LNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
L +V D ++DP N+G+ LRV A G VV
Sbjct: 97 LLLVLDGVKDPHNLGACLRVADAFGVHAVV 126
>sp|Q8ZIV4|RLMB_YERPE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Yersinia
pestis GN=rlmB PE=3 SV=1
Length = 246
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 88 ASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
A ++ P +V D + DP N+G+ LR A G V+ R
Sbjct: 87 ALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPR 128
>sp|Q9JZR3|RLMB_NEIMB 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rlmB PE=3 SV=1
Length = 250
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVVC 127
PL ++ D I DP N+G+ LR A+G V+
Sbjct: 96 PLLLILDGITDPHNLGACLRTADAMGVHAVIA 127
>sp|A3Q6V9|Y5122_MYCSJ Uncharacterized tRNA/rRNA methyltransferase Mjls_5122
OS=Mycobacterium sp. (strain JLS) GN=Mjls_5122 PE=3 SV=1
Length = 314
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 84 AHP---IASIDPASLP-LNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
AHP +A+ P L + DNI DP N+G+I+R AA G V+
Sbjct: 149 AHPDDLLATAKADGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVL 195
>sp|A1UMF4|Y4822_MYCSK Uncharacterized tRNA/rRNA methyltransferase Mkms_4822
OS=Mycobacterium sp. (strain KMS) GN=Mkms_4822 PE=3 SV=1
Length = 314
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 84 AHP---IASIDPASLP-LNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
AHP +A+ P L + DNI DP N+G+I+R AA G V+
Sbjct: 149 AHPDDLLATAKADGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVL 195
>sp|Q1B2P4|Y4736_MYCSS Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736
OS=Mycobacterium sp. (strain MCS) GN=Mmcs_4736 PE=3 SV=1
Length = 314
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 84 AHP---IASIDPASLP-LNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
AHP +A+ P L + DNI DP N+G+I+R AA G V+
Sbjct: 149 AHPDDLLATAKADGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVL 195
>sp|Q7A1Q9|TRMHL_STAAW Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MW2) GN=MW0487 PE=3 SV=1
Length = 248
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 91 DPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
+ L ++ D + DP N+GSILR A G V+
Sbjct: 90 EKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVI 125
>sp|Q6GBV6|TRMHL_STAAS Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MSSA476) GN=SAS0489 PE=3 SV=1
Length = 248
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 91 DPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
+ L ++ D + DP N+GSILR A G V+
Sbjct: 90 EKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVI 125
>sp|Q6GJD7|TRMHL_STAAR Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MRSA252) GN=SAR0535 PE=3 SV=1
Length = 248
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 91 DPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
+ L ++ D + DP N+GSILR A G V+
Sbjct: 90 EKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVI 125
>sp|Q7A794|TRMHL_STAAN Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain N315) GN=SA0490 PE=1 SV=1
Length = 248
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 91 DPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
+ L ++ D + DP N+GSILR A G V+
Sbjct: 90 EKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVI 125
>sp|Q99W72|TRMHL_STAAM Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=SAV0531 PE=1 SV=1
Length = 248
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 91 DPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
+ L ++ D + DP N+GSILR A G V+
Sbjct: 90 EKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVI 125
>sp|Q6IN84|MRM1_HUMAN rRNA methyltransferase 1, mitochondrial OS=Homo sapiens GN=MRM1
PE=1 SV=1
Length = 353
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 99 IVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129
+V D I+DP N G++LR +G +V+ SR
Sbjct: 148 LVLDGIQDPRNFGAVLRSAHFLGVDKVITSR 178
>sp|Q9AGT0|TRMHL_STAAE Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Newman) GN=NWMN_0494 PE=3 SV=1
Length = 248
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 99 IVCDNIRDPGNMGSILRVCAAVGARQVV 126
++ D + DP N+GSILR A G V+
Sbjct: 98 LILDGLEDPHNLGSILRTADATGVDGVI 125
>sp|Q5HIE3|TRMHL_STAAC Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain COL) GN=SACOL0578 PE=3 SV=1
Length = 248
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 99 IVCDNIRDPGNMGSILRVCAAVGARQVV 126
++ D + DP N+GSILR A G V+
Sbjct: 98 LILDGLEDPHNLGSILRTADATGVDGVI 125
>sp|A0PV26|Y4155_MYCUA Uncharacterized tRNA/rRNA methyltransferase MUL_4155
OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_4155
PE=3 SV=1
Length = 310
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 84 AHP----IASID--PASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVV 126
AHP A++D PA L + DNI DP N+G+I+R AA G V+
Sbjct: 146 AHPDDLLAAALDTPPALL---VALDNISDPRNLGAIVRSVAAFGGHGVL 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,189,752
Number of Sequences: 539616
Number of extensions: 2420095
Number of successful extensions: 4340
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 4247
Number of HSP's gapped (non-prelim): 103
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)