Query psy6779
Match_columns 144
No_of_seqs 173 out of 1134
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 18:11:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 4.7E-38 1.6E-42 244.6 14.1 140 4-144 17-163 (274)
2 2i6d_A RNA methyltransferase, 100.0 2.1E-37 7.2E-42 239.0 11.4 135 4-144 16-151 (257)
3 3nk6_A 23S rRNA methyltransfer 100.0 2.9E-38 9.9E-43 246.1 6.3 139 4-144 24-168 (277)
4 1x7o_A Avirb, rRNA methyltrans 100.0 2E-37 6.9E-42 242.4 10.8 141 4-144 28-174 (287)
5 1gz0_A Hypothetical tRNA/RRNA 100.0 6.4E-35 2.2E-39 224.7 8.6 136 9-144 6-153 (253)
6 3l8u_A SMU.1707C, putative rRN 99.7 4E-18 1.4E-22 125.1 4.7 52 93-144 14-65 (182)
7 3n4j_A RNA methyltransferase; 99.7 5E-18 1.7E-22 122.8 3.0 50 95-144 3-52 (165)
8 3e5y_A TRMH family RNA methylt 99.7 5E-18 1.7E-22 122.2 2.7 50 95-144 4-53 (160)
9 3kty_A Probable methyltransfer 99.6 8.6E-17 2.9E-21 117.0 2.7 50 95-144 9-60 (173)
10 2ha8_A TAR (HIV-1) RNA loop bi 99.6 2.9E-16 9.9E-21 115.3 2.5 49 94-144 24-73 (184)
11 1v2x_A TRNA (GM18) methyltrans 99.6 1E-15 3.6E-20 113.2 3.9 49 94-144 20-68 (194)
12 1zjr_A TRNA (guanosine-2'-O-)- 99.5 8.7E-15 3E-19 109.6 2.5 48 95-144 24-72 (211)
13 3ilk_A Uncharacterized tRNA/RR 99.5 2E-14 6.8E-19 109.8 3.6 47 96-144 7-53 (244)
14 3onp_A TRNA/RRNA methyltransfe 99.5 1.8E-14 6.1E-19 110.4 2.5 49 96-144 4-52 (249)
15 3ic6_A Putative methylase fami 99.4 8E-14 2.7E-18 105.0 2.3 49 96-144 17-84 (223)
16 1w41_A 50S ribosomal protein L 90.4 0.55 1.9E-05 30.2 5.0 67 16-83 16-90 (101)
17 3cpq_A 50S ribosomal protein L 89.6 0.84 2.9E-05 29.8 5.5 67 16-83 21-95 (110)
18 3v7e_A Ribosome-associated pro 86.7 1.2 4.2E-05 27.5 4.6 64 16-80 11-81 (82)
19 3o85_A Ribosomal protein L7AE; 85.3 2.8 9.7E-05 27.9 6.2 67 17-84 32-106 (122)
20 4a18_G RPL30; ribosome, eukary 85.2 1.1 3.8E-05 29.0 4.0 68 16-84 22-97 (104)
21 3u5e_c L32, RP73, YL38, 60S ri 84.6 0.91 3.1E-05 29.4 3.4 68 16-84 22-97 (105)
22 2fc3_A 50S ribosomal protein L 84.2 3.2 0.00011 27.6 6.1 66 16-82 28-101 (124)
23 3j21_Z 50S ribosomal protein L 83.8 0.71 2.4E-05 29.6 2.6 65 17-82 16-88 (99)
24 3iz5_f 60S ribosomal protein L 83.7 0.99 3.4E-05 29.8 3.3 67 16-83 26-100 (112)
25 1xbi_A 50S ribosomal protein L 83.0 2.5 8.6E-05 28.0 5.2 68 15-83 28-103 (120)
26 2jnb_A NHP2-like protein 1; sp 82.6 4.7 0.00016 27.7 6.5 67 16-83 50-124 (144)
27 1vq8_F 50S ribosomal protein L 82.3 3.1 0.0001 27.5 5.4 66 16-82 29-102 (120)
28 2aif_A Ribosomal protein L7A; 81.7 5.4 0.00019 26.9 6.6 68 16-84 41-116 (135)
29 3on1_A BH2414 protein; structu 81.7 1.8 6.2E-05 27.7 3.9 62 17-80 19-87 (101)
30 1rlg_A 50S ribosomal protein L 81.7 3 0.0001 27.5 5.1 66 16-82 27-100 (119)
31 3v7q_A Probable ribosomal prot 79.5 3.6 0.00012 26.3 4.8 62 17-80 20-88 (101)
32 2lbw_A H/ACA ribonucleoprotein 78.7 2.2 7.5E-05 28.3 3.7 66 16-82 20-93 (121)
33 2qi2_A Pelota, cell division p 78.4 1.5 5.1E-05 34.5 3.2 62 16-84 265-338 (347)
34 2ale_A SNU13, NHP2/L7AE family 77.8 5.7 0.0002 26.9 5.6 66 16-82 32-105 (134)
35 2vgn_A DOM34; translation term 76.0 4.3 0.00015 32.3 5.3 69 15-87 296-379 (386)
36 1x52_A Pelota homolog, CGI-17; 72.6 3.9 0.00013 27.3 3.6 68 15-86 37-119 (124)
37 3oby_A Protein pelota homolog; 70.8 4.8 0.00017 31.7 4.3 65 15-86 264-344 (352)
38 3obw_A Protein pelota homolog; 70.5 6.7 0.00023 31.0 5.1 62 15-83 284-362 (364)
39 3agk_A Peptide chain release f 69.5 9.2 0.00031 30.0 5.7 63 14-83 297-369 (373)
40 2o3a_A UPF0106 protein AF_0751 69.4 2.7 9.1E-05 29.9 2.3 17 114-130 25-41 (178)
41 1dt9_A ERF1, protein (eukaryot 68.8 11 0.00039 30.2 6.3 27 15-42 299-325 (437)
42 3vi6_A 60S ribosomal protein L 67.4 6.8 0.00023 26.1 4.0 68 16-84 27-102 (125)
43 2yy8_A ATRM56, UPF0106 protein 67.2 3 0.0001 30.2 2.2 17 114-130 22-38 (201)
44 3mca_B Protein DOM34, elongati 61.8 6 0.00021 31.5 3.3 66 15-87 290-373 (390)
45 3j15_A Protein pelota; ribosom 52.3 8.9 0.00031 30.1 2.8 61 16-83 280-355 (357)
46 3m0z_A Putative aldolase; MCSG 49.4 7.8 0.00027 29.0 1.8 24 103-126 194-217 (249)
47 3m6y_A 4-hydroxy-2-oxoglutarat 48.1 8 0.00027 29.2 1.7 24 103-126 217-240 (275)
48 1k3r_A Conserved protein MT000 44.2 16 0.00054 27.7 2.9 22 109-130 27-48 (268)
49 3jyw_G 60S ribosomal protein L 43.4 7.4 0.00025 25.6 0.9 69 12-82 21-97 (113)
50 3agj_B Protein pelota homolog; 43.1 10 0.00035 29.7 1.8 66 15-84 271-351 (358)
51 3fs2_A 2-dehydro-3-deoxyphosph 41.2 23 0.00078 27.3 3.4 35 96-130 214-262 (298)
52 3dcm_X AdoMet, uncharacterized 37.5 42 0.0014 24.0 4.2 22 109-130 30-51 (192)
53 3tml_A 2-dehydro-3-deoxyphosph 36.2 22 0.00076 27.2 2.6 34 97-130 197-244 (288)
54 3e20_C Eukaryotic peptide chai 34.9 15 0.00052 29.7 1.6 27 15-42 304-330 (441)
55 3izc_H 60S ribosomal protein R 34.4 35 0.0012 25.7 3.4 69 13-83 128-204 (256)
56 3iz5_H 60S ribosomal protein L 32.1 1.5E+02 0.0051 22.2 6.5 67 15-83 126-200 (258)
57 3ajf_A Non-structural protein 29.9 8.7 0.0003 24.0 -0.5 23 97-119 39-61 (94)
58 3ir9_A Peptide chain release f 29.0 68 0.0023 22.2 4.0 28 14-42 44-71 (166)
59 2ovm_B NCOR, progesterone rece 26.6 24 0.00083 16.7 0.9 12 108-119 9-22 (26)
60 2xzm_U Ribosomal protein L7AE 24.5 48 0.0017 21.9 2.5 53 17-70 25-85 (126)
61 3qy7_A Tyrosine-protein phosph 24.3 67 0.0023 23.7 3.5 26 107-132 16-44 (262)
62 1z69_A COG2141, coenzyme F420- 24.0 69 0.0024 23.9 3.6 31 101-131 7-37 (327)
63 3nvt_A 3-deoxy-D-arabino-heptu 23.8 52 0.0018 26.1 2.9 19 112-130 330-348 (385)
64 2b81_A Luciferase-like monooxy 23.1 88 0.003 23.6 4.0 27 104-130 40-66 (323)
65 4a17_F RPL7A, 60S ribosomal pr 22.3 97 0.0033 23.2 3.9 65 14-80 122-194 (255)
66 3o63_A Probable thiamine-phosp 22.1 1.9E+02 0.0064 21.1 5.5 38 94-131 29-66 (243)
67 1ezw_A Coenzyme F420-dependent 22.0 78 0.0027 24.0 3.6 33 99-131 8-40 (349)
68 1xi3_A Thiamine phosphate pyro 22.0 1.4E+02 0.0048 20.4 4.7 33 95-129 15-47 (215)
69 3sz8_A 2-dehydro-3-deoxyphosph 20.4 53 0.0018 25.0 2.2 19 112-130 225-243 (285)
70 4sgb_I Potato inhibitor, PCI-1 20.4 30 0.001 19.3 0.6 21 119-139 15-35 (51)
No 1
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=4.7e-38 Score=244.58 Aligned_cols=140 Identities=26% Similarity=0.438 Sum_probs=119.3
Q ss_pred cccchhhhhcCCEEEEeHHHHHHHHHcCCceeEEEEecccc------cccCCCCCC-CCEEEeCHHHHHhhcCCCCCCce
Q psy6779 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI------LKELPLPED-VPQHRVDYKNIQLWSDLVTPPGI 76 (144)
Q Consensus 4 L~~~k~R~~~~~~~v~G~~~v~eal~~~~~i~~l~~~~~~~------~~~l~~~~~-~~~~~v~~~~l~~l~~~~~~qGv 76 (144)
|+++|+|++++.|++||.|+|+|||+++..++++|++++.. +.+.+...+ ++++.++++.|++++++.+||||
T Consensus 17 L~~kk~R~~~g~f~veG~~~v~eal~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv 96 (274)
T 1ipa_A 17 LLERKHRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSEAVLKKLSVRDNPAGL 96 (274)
T ss_dssp GGSHHHHHHHTEEEEESHHHHHHHHHTTCCEEEEEEETTCCCHHHHHHHHCC-----CEEEEECHHHHHHHCCSSSCCSE
T ss_pred HhccccccccCeEEEEeHHHHHHHHhCCCCeEEEEEEcCcccchHHHHHHHHHhcCCccEEEeCHHHHHHHhCCCCCCeE
Confidence 78889999999999999999999999987899999987631 222344457 89999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779 77 IGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144 (144)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~ 144 (144)
+|+++.+..++.++.....+++++||+||||||+|||+|||+|||+++|+++++ +|+|||+++|+||
T Consensus 97 ~a~~~~~~~~l~~~~~~~~~~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~-~~~~~~~v~ras~ 163 (274)
T 1ipa_A 97 IALARMPERTLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNST 163 (274)
T ss_dssp EEEEECCCCCCCCCCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CCTTCHHHHHHTT
T ss_pred EEEEeCCCCCHHHHhccCCCeEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCC-cCcCCHHHHHHcC
Confidence 999998775544432233568999999999999999999999999999999999 9999999999997
No 2
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=100.00 E-value=2.1e-37 Score=239.01 Aligned_cols=135 Identities=27% Similarity=0.476 Sum_probs=119.1
Q ss_pred cccchhhhhcCCEEEEeHHHHHHHHHcCCceeEEEEecccccccCCCCCCCCEEEeCH-HHHHhhcCCCCCCceEEEEeC
Q psy6779 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDY-KNIQLWSDLVTPPGIIGIFEL 82 (144)
Q Consensus 4 L~~~k~R~~~~~~~v~G~~~v~eal~~~~~i~~l~~~~~~~~~~l~~~~~~~~~~v~~-~~l~~l~~~~~~qGv~a~~~~ 82 (144)
|+++|+|++++.|++||.|+|+|||++ ..++.+|++++. ..++....+++++.+++ +.|++++++.+||||+|++++
T Consensus 16 L~~~k~R~~~g~f~veG~~~v~eal~~-~~i~~l~~~~~~-~~~l~~~~~~~v~~v~~~~~l~~ls~~~~~qGv~a~~~~ 93 (257)
T 2i6d_A 16 LRERKYRLREQAFAVEGPKLVGEMLPF-YRCRMLVGTAAM-LRAVSTPHDAEVVELPESFDFKRISTQTTPQPLMAVFDL 93 (257)
T ss_dssp TTSHHHHHHHTEEEEESHHHHHHHGGG-SCEEEEEEEHHH-HHTSCCCTTCEEEEECTTCCGGGTCCSSSCCSEEEEEEC
T ss_pred HhcccchhhcCcEEEEcHHHHHHHHhc-CCcCEEEEEcCc-hHHHHHhcCCCEEEeChHHHHHHHhcCCCCCeEEEEEEC
Confidence 788899999999999999999999999 889999998753 22232244689999999 999999999999999999998
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779 83 PAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~ 144 (144)
+..++.++ .+++|+||+||||||+|||+|||+|||+++|+++++++|+|||+++|+||
T Consensus 94 ~~~~l~~~----~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~v~ras~ 151 (257)
T 2i6d_A 94 PAEPEPVV----EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASM 151 (257)
T ss_dssp CCCCCCCC----CSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTST
T ss_pred CCCChHHh----CCeEEEEECCCCcchHHHHHHHHHHhCCCEEEEcCCCCCcCCHHHheecC
Confidence 76543332 26899999999999999999999999999999999999999999999997
No 3
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=2.9e-38 Score=246.09 Aligned_cols=139 Identities=22% Similarity=0.332 Sum_probs=110.1
Q ss_pred cccchhhhhcCCEEEEeHHHHHHHHHcCCceeEEEEecccc----cccCCCCCCCCEEEeCHHHHHhhcCCCCCCceEEE
Q psy6779 4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI----LKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGI 79 (144)
Q Consensus 4 L~~~k~R~~~~~~~v~G~~~v~eal~~~~~i~~l~~~~~~~----~~~l~~~~~~~~~~v~~~~l~~l~~~~~~qGv~a~ 79 (144)
|+ +|+|++++.|++||.|+|+|||+++..++++|++++.. +.+.+...+++++.++++.|++++++.+||||+|+
T Consensus 24 L~-~k~R~~~g~flveG~~~V~eaL~~~~~i~~l~~~~~~~~~~~l~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~ 102 (277)
T 3nk6_A 24 VT-KHSRASIKTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDLCRQREIPVRLIDVSIVNQLFKAERKAKVFGI 102 (277)
T ss_dssp HH-HTC----CEEEEESHHHHHHHHHTTCCEEEEEEETTSCCCHHHHHHHHHTTCCEEEECHHHHTTCC-----CCEEEE
T ss_pred Hh-hhhHhhcCCEEEEeHHHHHHHHhCCCCeEEEEEeCCccCcHHHHHHHHhcCCcEEEECHHHHHHhhCCCCCCeEEEE
Confidence 66 89999999999999999999999998899999987531 11122345799999999999999999999999999
Q ss_pred EeCC-CCCCCCCCCCCCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcC-CccCCCCcceeeccC
Q psy6779 80 FELP-AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR-GCVDIYDNKVIRAAA 144 (144)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~-~~~d~~~pkviRaS~ 144 (144)
++.+ .+++.++.....+ +++||+||||||+|||+|||+|||+++|++++ +|+|+|||+++|+||
T Consensus 103 ~~~~~~~~l~~~~~~~~~-~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~v~ras~ 168 (277)
T 3nk6_A 103 ARVPRPARLADIAERGGD-VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASR 168 (277)
T ss_dssp EECCCCCCHHHHHHHCSC-EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTT
T ss_pred EecCCCCCHHHHhccCCC-EEEEEcCCCcchHHHHHHHHHHcCCCEEEEcCCCCcCCCCHHHHHHhC
Confidence 9988 4443332211345 99999999999999999999999999999999 999999999999997
No 4
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=2e-37 Score=242.41 Aligned_cols=141 Identities=22% Similarity=0.388 Sum_probs=120.7
Q ss_pred cccc-hhhhhcCCEEEEeHHHHHHHHHcCCceeEEEEecccc----cccCCCCCCCCEEEeCHHHHHhhcCCC-CCCceE
Q psy6779 4 MKSR-KQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI----LKELPLPEDVPQHRVDYKNIQLWSDLV-TPPGII 77 (144)
Q Consensus 4 L~~~-k~R~~~~~~~v~G~~~v~eal~~~~~i~~l~~~~~~~----~~~l~~~~~~~~~~v~~~~l~~l~~~~-~~qGv~ 77 (144)
|+++ |+|++++.|++||.|+|+|||+++..++.+|++++.. +.++....+++++.++++.|++++++. +||||+
T Consensus 28 L~~~~k~R~~~g~f~veG~~~V~eal~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~v~~v~~~~l~~ls~~~~~~qGv~ 107 (287)
T 1x7o_A 28 LLGNRNKRTRAGEFLVMGVRPISLAVEHGWPVRTLLYDGQRELSKWARELLRTVRTEQIAMAPDLLMELGEKNEAPPEVV 107 (287)
T ss_dssp TTSCHHHHHHHTEEEEESHHHHHHHHHTTCCEEEEEEESSCCCCHHHHHHHHHSCSEEEEECHHHHTTSSCSSSCCCSEE
T ss_pred HhhchhhHhhcCcEEEEeHHHHHHHHhCCCCeEEEEEecCcccchhHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCCcEE
Confidence 6777 9999999999999999999999987799999987531 222221123789999999999999999 999999
Q ss_pred EEEeCCCCCCCCCCCCCCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779 78 GIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144 (144)
Q Consensus 78 a~~~~~~~~~~~~~~~~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~ 144 (144)
|+++.+..++.+++....+++|+||+||||||+|||+|||+|||+++||++++++|+|||+++|+||
T Consensus 108 a~~~~~~~~l~~~~~~~~~l~lvLd~i~dP~NlGaIiRta~a~G~~~vil~~~~~d~~~~kv~ras~ 174 (287)
T 1x7o_A 108 AVVEMPADDLDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSST 174 (287)
T ss_dssp EEEECCCCCGGGSCCCTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSCTTSHHHHHHTT
T ss_pred EEEecCCCCHHHHhcccCCEEEEEeCCCCcchHHHHHHHhHhcccCEEEEECCCcCccCHHHHhhhc
Confidence 9999887554444322257899999999999999999999999999999999999999999999997
No 5
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=6.4e-35 Score=224.68 Aligned_cols=136 Identities=19% Similarity=0.211 Sum_probs=109.2
Q ss_pred hhhhcCCEEEEeHHHHHHHHHcCC-ceeEEEEecccc---cccC---CCCCCCCEEEeCHHHHHhhcCCCCCCceEEEEe
Q psy6779 9 QREKKGWLMLEGKRILIDALKANL-KLKMVFFSQWDI---LKEL---PLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFE 81 (144)
Q Consensus 9 ~R~~~~~~~v~G~~~v~eal~~~~-~i~~l~~~~~~~---~~~l---~~~~~~~~~~v~~~~l~~l~~~~~~qGv~a~~~ 81 (144)
-|++++.|+|||.|+|+|||+++. .++++|++++.. +.++ +...+++++.++++.|++++++.+||||+|+++
T Consensus 6 ~r~~~~~~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~i~v~~v~~~~l~~ls~~~~~qGv~a~~~ 85 (253)
T 1gz0_A 6 PRGSHMSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVK 85 (253)
T ss_dssp ------CEEEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEEEECSHHHHHTTTSCCCTTEEEEEC
T ss_pred ccCCCCcEEEEEHHHHHHHHhcCCCCeEEEEEECCccchhHHHHHHHHHHCCCcEEEeCHHHHHHHhCCCCCcEEEEEEe
Confidence 377889999999999999999984 799999987521 1122 223478999999999999999999999999999
Q ss_pred CCCCC-CCCC---C-CCCCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779 82 LPAHP-IASI---D-PASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144 (144)
Q Consensus 82 ~~~~~-~~~~---~-~~~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~ 144 (144)
++++. ..++ . ....+++++||++|||||+|||+|||+|||+++||++++++|+|||+++|+||
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~~ras~ 153 (253)
T 1gz0_A 86 PGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVAC 153 (253)
T ss_dssp CCCCCCGGGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHT
T ss_pred ccccCcHHHHHHHHhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCCCCCCCCHHHHhhhc
Confidence 87642 1111 1 11257899999999999999999999999999999999999999999999987
No 6
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=99.71 E-value=4e-18 Score=125.14 Aligned_cols=52 Identities=27% Similarity=0.246 Sum_probs=44.4
Q ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779 93 ASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144 (144)
Q Consensus 93 ~~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~ 144 (144)
...+++++||++|||+|+|+|+|||+|||++++|++++++++++|++.||||
T Consensus 14 ~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~viv~~~~~~~~~~~~~ras~ 65 (182)
T 3l8u_A 14 TLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGL 65 (182)
T ss_dssp -CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCTTTC-----
T ss_pred CCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEEECCCCCCCCcHHHHHhCc
Confidence 4568999999999999999999999999999999999999999999999986
No 7
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=99.69 E-value=5e-18 Score=122.81 Aligned_cols=50 Identities=30% Similarity=0.349 Sum_probs=47.4
Q ss_pred CCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779 95 LPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144 (144)
Q Consensus 95 ~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~ 144 (144)
++++++||+++||+|+|+|+|||+|||++++|+++.+++++++++.|+||
T Consensus 3 ~~~~vvL~~~~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~ 52 (165)
T 3n4j_A 3 AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGL 52 (165)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCHHHHHHTTC
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCeEEEECCCCCCCccHHHHHhcc
Confidence 36899999999999999999999999999999999999999999999986
No 8
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=99.69 E-value=5e-18 Score=122.19 Aligned_cols=50 Identities=30% Similarity=0.383 Sum_probs=47.1
Q ss_pred CCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779 95 LPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144 (144)
Q Consensus 95 ~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~ 144 (144)
++++++||++|||+|+|+|+|||++||++.+|+++.+++++++++.|+||
T Consensus 4 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~ 53 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGL 53 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTC
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCcEEEECCCCCCCccHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999986
No 9
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=99.62 E-value=8.6e-17 Score=116.96 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=44.4
Q ss_pred CCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcC-CccCCC-CcceeeccC
Q psy6779 95 LPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR-GCVDIY-DNKVIRAAA 144 (144)
Q Consensus 95 ~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~-~~~d~~-~pkviRaS~ 144 (144)
++++++||++|||+|+|+|+|||++||+++|++.+ .+.|+| +||++|+||
T Consensus 9 ~~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~~~d~~~~~~~~r~a~ 60 (173)
T 3kty_A 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALAS 60 (173)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHT
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCCccccCCCHHHHHHcC
Confidence 35899999999999999999999999999999854 566775 999999985
No 10
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=99.59 E-value=2.9e-16 Score=115.31 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=43.7
Q ss_pred CCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCccee-eccC
Q psy6779 94 SLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVI-RAAA 144 (144)
Q Consensus 94 ~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkvi-RaS~ 144 (144)
..+++|+||+||||+|+|||+|||+|||+++|++++ .+++++|++ |+||
T Consensus 24 ~~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~--~~~~~~k~~~r~s~ 73 (184)
T 2ha8_A 24 ISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGS--LQCISDKQFQHLSV 73 (184)
T ss_dssp CCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESC--GGGGGSHHHHHHHT
T ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEECC--CCCCCcccceeecC
Confidence 457899999999999999999999999999999976 567999998 6664
No 11
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=99.57 E-value=1e-15 Score=113.18 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=44.3
Q ss_pred CCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779 94 SLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144 (144)
Q Consensus 94 ~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~ 144 (144)
.++++++||+++||+|+|+|+|||++||+++|++.+.+.++ |+++|+||
T Consensus 20 ~~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~~--~~~~r~s~ 68 (194)
T 1v2x_A 20 QPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGV--PTFNETSG 68 (194)
T ss_dssp BTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGS--CCCCSSCS
T ss_pred CCCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCCc--hhhHHHCC
Confidence 34689999999999999999999999999999998777664 89999986
No 12
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=99.48 E-value=8.7e-15 Score=109.55 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=41.5
Q ss_pred CCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCccee-eccC
Q psy6779 95 LPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVI-RAAA 144 (144)
Q Consensus 95 ~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkvi-RaS~ 144 (144)
++++++||+++||+|+|+|+|||++||+++|++.+.+.++ |+++ |+||
T Consensus 24 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~--~~~~~r~s~ 72 (211)
T 1zjr_A 24 KDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK--AKINEGITQ 72 (211)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC--CCCCHHHHT
T ss_pred CCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCc--hHHHHHHcC
Confidence 3589999999999999999999999999999998877664 5444 8876
No 13
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=99.46 E-value=2e-14 Score=109.81 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=44.2
Q ss_pred CeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144 (144)
Q Consensus 96 ~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~ 144 (144)
.+.++||++|||||+|+|+|||++||++++++.+.+ +++|+++|+||
T Consensus 7 ~l~vVL~~~~dP~NiGai~Rta~a~G~~~l~lv~p~--~~~~~a~r~A~ 53 (244)
T 3ilk_A 7 NIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSA 53 (244)
T ss_dssp TEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTT
T ss_pred CcEEEEECCCCcChHHHHHHHHHHhCCCEEEEECCC--CCCHHHHHHcC
Confidence 578999999999999999999999999999998877 89999999985
No 14
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=99.45 E-value=1.8e-14 Score=110.37 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=45.3
Q ss_pred CeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA 144 (144)
Q Consensus 96 ~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~ 144 (144)
++.+|||++|||||+|||+|||++||++++++.+.++++++++++|+||
T Consensus 4 ~~~vVL~~~~dP~NiGai~Rta~a~G~~~l~Lv~p~~~~~~~~a~~~a~ 52 (249)
T 3onp_A 4 EPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMAS 52 (249)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHG
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCcCCCcHHHHHHcC
Confidence 6799999999999999999999999999999988887888999998775
No 15
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=99.39 E-value=8e-14 Score=105.03 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=42.6
Q ss_pred CeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCC-------------------CCcceeeccC
Q psy6779 96 PLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDI-------------------YDNKVIRAAA 144 (144)
Q Consensus 96 ~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~-------------------~~pkviRaS~ 144 (144)
.+.++||++|||+|+|+|+|||++||++++++.+.++++ +||+++|+||
T Consensus 17 ~l~vVLd~~~dP~NiGaI~Rta~afG~~~l~Lv~p~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~aa 84 (223)
T 3ic6_A 17 NIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILAS 84 (223)
T ss_dssp GEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHG
T ss_pred CEEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCccccccccccccccccccccccCCHHHHHHhC
Confidence 579999999999999999999999999999997666554 4578988875
No 16
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=90.37 E-value=0.55 Score=30.17 Aligned_cols=67 Identities=9% Similarity=0.034 Sum_probs=48.9
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc------ccccCCCCCCCCEEE--eCHHHHHhhcCCCCCCceEEEEeCC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD------ILKELPLPEDVPQHR--VDYKNIQLWSDLVTPPGIIGIFELP 83 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~------~~~~l~~~~~~~~~~--v~~~~l~~l~~~~~~qGv~a~~~~~ 83 (144)
-++.|.+.+..+++++. .+-+++..+. ++..++...++|++. -+.+.|....+....-.++|+.+..
T Consensus 16 kl~~G~~~v~kai~~gk-a~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~vai~d~g 90 (101)
T 1w41_A 16 KIVMGARKSIQYAKMGG-AKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPG 90 (101)
T ss_dssp EEEESHHHHHHHHHHTC-CSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCEEEEEECT
T ss_pred CEeECHHHHHHHHHcCC-CcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEEEEEecCC
Confidence 47999999999999875 3557776552 233445556899776 4889999999876555677777654
No 17
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=89.56 E-value=0.84 Score=29.83 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=48.6
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc------ccccCCCCCCCCEEEe--CHHHHHhhcCCCCCCceEEEEeCC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD------ILKELPLPEDVPQHRV--DYKNIQLWSDLVTPPGIIGIFELP 83 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~------~~~~l~~~~~~~~~~v--~~~~l~~l~~~~~~qGv~a~~~~~ 83 (144)
-++.|.+.+..+++++. .+-+++..+. .+..+|...++|++.+ +.+.|....+....-.++|+.+..
T Consensus 21 kl~~G~~~v~kai~~gk-a~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~vaI~d~g 95 (110)
T 3cpq_A 21 KVILGSKRTIKFVKHGE-GKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEG 95 (110)
T ss_dssp EEEESHHHHHHHHHTTC-CSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEEEEEECT
T ss_pred CeeeCHHHHHHHHHcCC-ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEEEEecCC
Confidence 47999999999999874 4557776552 2344566678997754 889999999876555567777654
No 18
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=86.69 E-value=1.2 Score=27.50 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=46.0
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc------ccccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEE
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD------ILKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIF 80 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~------~~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~ 80 (144)
-++.|.+.+..+++++. .+-+++.++. .+..++...++|++.+ +.+.|.+.++....-.++|++
T Consensus 11 k~~~G~~~v~kai~~gk-aklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~~~~~ai~ 81 (82)
T 3v7e_A 11 SIIIGTKQTVKALKRGS-VKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAII 81 (82)
T ss_dssp EEEESHHHHHHHHTTTC-EEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSCCSEEEEE
T ss_pred CeeEcHHHHHHHHHcCC-eeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEe
Confidence 57899999999999874 5667777652 2344456678998765 566888888876665565553
No 19
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=85.27 E-value=2.8 Score=27.87 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=47.9
Q ss_pred EEEeHHHHHHHHHcCCceeEEEEeccc---c----cccCCCCCCCCEEE-eCHHHHHhhcCCCCCCceEEEEeCCC
Q psy6779 17 MLEGKRILIDALKANLKLKMVFFSQWD---I----LKELPLPEDVPQHR-VDYKNIQLWSDLVTPPGIIGIFELPA 84 (144)
Q Consensus 17 ~v~G~~~v~eal~~~~~i~~l~~~~~~---~----~~~l~~~~~~~~~~-v~~~~l~~l~~~~~~qGv~a~~~~~~ 84 (144)
++.|.+.+..+++++. .+-+++..+. + +..+|...++|+.. -+.+.|...++....-.++++.+...
T Consensus 32 lv~G~~~v~kai~~gk-a~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~d~~~ 106 (122)
T 3o85_A 32 IKRGANEALKQVNRGK-AELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALGRACNVSVPTIVASIGKHDA 106 (122)
T ss_dssp EEESHHHHHHHHHTTC-CSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHHHHTTCSSCCSEEEECCCTT
T ss_pred EeEcHHHHHHHHHcCC-ceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCCEEEEEEEcccc
Confidence 7999999999999875 4557776552 1 22235667899665 46779999998766666677766544
No 20
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=85.21 E-value=1.1 Score=28.95 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=49.6
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc------ccccCCCCCCCCEEE--eCHHHHHhhcCCCCCCceEEEEeCCC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD------ILKELPLPEDVPQHR--VDYKNIQLWSDLVTPPGIIGIFELPA 84 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~------~~~~l~~~~~~~~~~--v~~~~l~~l~~~~~~qGv~a~~~~~~ 84 (144)
-++.|.+.+..+++++. .+-+++.++. ++..++...++|++. -+.+.|...++....-.++|+.+.-.
T Consensus 22 klv~G~~~v~kai~~gk-aklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~D~G~ 97 (104)
T 4a18_G 22 KATLGYKSTIKAIRNGT-AKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAILDAGD 97 (104)
T ss_dssp EEEESHHHHHHHHHHTC-CCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECSS
T ss_pred CEeECHHHHHHHHHcCC-ceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCccCEEEEEEeccch
Confidence 47999999999999875 4557776552 233334455799873 68889999998766667788887653
No 21
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=84.62 E-value=0.91 Score=29.44 Aligned_cols=68 Identities=10% Similarity=0.075 Sum_probs=50.1
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc------ccccCCCCCCCCEE-E-eCHHHHHhhcCCCCCCceEEEEeCCC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD------ILKELPLPEDVPQH-R-VDYKNIQLWSDLVTPPGIIGIFELPA 84 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~------~~~~l~~~~~~~~~-~-v~~~~l~~l~~~~~~qGv~a~~~~~~ 84 (144)
-++.|.+.+..+++.+. .+-+++.++. ++..++...++|++ + -+.+.|...++....-.++|+.+.-.
T Consensus 22 k~v~G~~~v~kai~~gk-aklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~~~~~~vaI~D~G~ 97 (105)
T 3u5e_c 22 KYTLGYKSTVKSLRQGK-SKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGD 97 (105)
T ss_dssp EEEESHHHHHHHHHTTC-CSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECCS
T ss_pred CeeECHHHHHHHHHcCC-ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCcccEEEEEEeccch
Confidence 47999999999999875 4667776652 23334555689998 3 58899999998766666788877653
No 22
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=84.23 E-value=3.2 Score=27.56 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=47.4
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc---c----cccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEEeC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD---I----LKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIFEL 82 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~---~----~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~ 82 (144)
-++.|.+.+..+++++. .+-+++..+. . +..+|...++|+..+ +.+.|...++...+-.++|+.+.
T Consensus 28 kl~~G~~~v~kal~~gk-a~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~G~~~~~~~vaI~d~ 101 (124)
T 2fc3_A 28 RIKKGTNETTKAVERGL-AKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEP 101 (124)
T ss_dssp EEEESHHHHHHHHHTTC-CSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred CccCCHHHHHHHHHcCC-ceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEECc
Confidence 47999999999999874 4557776542 1 222345568887654 77899999987666777777755
No 23
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.82 E-value=0.71 Score=29.56 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=45.9
Q ss_pred EEEeHHHHHHHHHcCCceeEEEEeccc------ccccCCCCCCCCEE-E-eCHHHHHhhcCCCCCCceEEEEeC
Q psy6779 17 MLEGKRILIDALKANLKLKMVFFSQWD------ILKELPLPEDVPQH-R-VDYKNIQLWSDLVTPPGIIGIFEL 82 (144)
Q Consensus 17 ~v~G~~~v~eal~~~~~i~~l~~~~~~------~~~~l~~~~~~~~~-~-v~~~~l~~l~~~~~~qGv~a~~~~ 82 (144)
++.|.+.+..+++++. .+-+++.++. ++..++...++|++ . -+.+.|....+....-.++|+.+.
T Consensus 16 ~v~G~~~v~kai~~gk-a~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~d~ 88 (99)
T 3j21_Z 16 VVLGSNETIRLAKTGG-AKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDP 88 (99)
T ss_dssp EEESHHHHHHHHHHTC-CSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSEEEEESSC
T ss_pred EeECHHHHHHHHHcCC-ccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEEEEEEEcc
Confidence 6899999999999875 4557776552 23344556789974 4 577889988886555566666543
No 24
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=83.72 E-value=0.99 Score=29.77 Aligned_cols=67 Identities=9% Similarity=0.141 Sum_probs=48.8
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc------ccccCCCCCCCCEEEe--CHHHHHhhcCCCCCCceEEEEeCC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD------ILKELPLPEDVPQHRV--DYKNIQLWSDLVTPPGIIGIFELP 83 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~------~~~~l~~~~~~~~~~v--~~~~l~~l~~~~~~qGv~a~~~~~ 83 (144)
-++.|.+.+..+++.+. .+-+++.++. ++..+|...++|++.+ +...|...++....-.++|+.+.-
T Consensus 26 k~~~G~~~t~kai~~gk-akLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~~~v~~vaI~D~G 100 (112)
T 3iz5_f 26 KYTLGYKTVLKTLRSSL-GKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPG 100 (112)
T ss_dssp EEEESHHHHHHHHHTTC-CSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTTCSSCEEEEECCS
T ss_pred CeeECHHHHHHHHHcCC-ceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCccceEEEEEeccc
Confidence 47999999999999875 4667776652 2344456678999877 678999999865445667776554
No 25
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=83.00 E-value=2.5 Score=27.97 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=48.0
Q ss_pred CEEEEeHHHHHHHHHcCCceeEEEEeccc---c----cccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEEeCC
Q psy6779 15 WLMLEGKRILIDALKANLKLKMVFFSQWD---I----LKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIFELP 83 (144)
Q Consensus 15 ~~~v~G~~~v~eal~~~~~i~~l~~~~~~---~----~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~~ 83 (144)
.-++.|.+.+..+++++. .+-+++..+. + +..+|...++|+..+ +.+.|...++...+-.++|+.+..
T Consensus 28 gkl~~G~~~v~kai~~gk-a~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~g 103 (120)
T 1xbi_A 28 QKIKKGANEVTKAVERGI-AKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEG 103 (120)
T ss_dssp SEEEESHHHHHHHHHHTC-CSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEECS
T ss_pred CCccccHHHHHHHHHcCC-ceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCCCEEEEEEeccc
Confidence 357999999999999874 3557776542 1 222344558887654 778999999876667777777543
No 26
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=82.57 E-value=4.7 Score=27.70 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=48.5
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc-------ccccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEEeCC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD-------ILKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIFELP 83 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~-------~~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~~ 83 (144)
-++.|.+.+..+++++. .+-+++..+. .+..+|...++|++.+ +...|...++....-.++|+.+..
T Consensus 50 kl~~G~kev~KaI~~gk-akLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~~~~ 124 (144)
T 2jnb_A 50 QLRKGANEATKTLNRGI-SEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKE 124 (144)
T ss_dssp CCCBCHHHHHHHHHHTC-EEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHHHHHHTCSSCCSEEEEECCT
T ss_pred CccccHHHHHHHHHhCC-CeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCceEEEEEEeCC
Confidence 37899999999999874 5667776552 2334566779996554 678999999877555667877544
No 27
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=82.28 E-value=3.1 Score=27.46 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=46.4
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc---c----cccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEEeC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD---I----LKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIFEL 82 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~---~----~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~ 82 (144)
-++.|.+.+..+++++. .+-+++..+. . +..+|...++|+..+ +.+.|...++...+-.++|+.+.
T Consensus 29 ~l~~G~~~v~kal~~gk-a~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~ 102 (120)
T 1vq8_F 29 AVKKGTNETTKSIERGS-AELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDA 102 (120)
T ss_dssp CEEESHHHHHHHHHHTC-CSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHHHTTCSSCCSEEEESSC
T ss_pred CEeECHHHHHHHHHcCC-ceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEecC
Confidence 37999999999999874 3556776542 1 223355678997654 77899999987656667776543
No 28
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=81.71 E-value=5.4 Score=26.91 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=47.5
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc-------ccccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEEeCCC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD-------ILKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIFELPA 84 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~-------~~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~~~ 84 (144)
-++.|.+.+..+++++. .+-+++..+. .+..+|...++|++.+ +.+.|...++....--.+|+.+...
T Consensus 41 klv~G~~~v~kal~~gk-aklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~~~v~~vaI~d~~~ 116 (135)
T 2aif_A 41 QLRKGANEATKALNRGI-AEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVIAAAITSKDG 116 (135)
T ss_dssp CEEESHHHHHHHHHTTC-EEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEECCTT
T ss_pred CcccCHHHHHHHHHcCC-CeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCCCcEEEEEEEcCCc
Confidence 37999999999999874 4667776542 1233456678998765 7789999998764444477765543
No 29
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=81.67 E-value=1.8 Score=27.66 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=43.6
Q ss_pred EEEeHHHHHHHHHcCCceeEEEEeccc------ccccCCCCCCCCEEE-eCHHHHHhhcCCCCCCceEEEE
Q psy6779 17 MLEGKRILIDALKANLKLKMVFFSQWD------ILKELPLPEDVPQHR-VDYKNIQLWSDLVTPPGIIGIF 80 (144)
Q Consensus 17 ~v~G~~~v~eal~~~~~i~~l~~~~~~------~~~~l~~~~~~~~~~-v~~~~l~~l~~~~~~qGv~a~~ 80 (144)
++.|.+.+..+++++. .+-+++..+. ++..++...++|++. -+.+.|....+.. +..++|+.
T Consensus 19 ~v~G~~~v~kai~~gk-a~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~-~~~~vai~ 87 (101)
T 3on1_A 19 LLTGEEQVVKAVQNGQ-VTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKH-ERVVIGVK 87 (101)
T ss_dssp EEESHHHHHHHHHTTC-CSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHHHHTTSS-CCSEEEEC
T ss_pred EeECHHHHHHHHHcCC-CcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCc-CeEEEEEE
Confidence 6899999999999875 4557776652 233345556788754 5677999998865 44566664
No 30
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=81.66 E-value=3 Score=27.49 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=47.0
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc---c----cccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEEeC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD---I----LKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIFEL 82 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~---~----~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~ 82 (144)
-++.|.+.+..+++++. .+-+++..+. + +..+|...++|+..+ +.+.|....+...+-.++|+.+.
T Consensus 27 ~l~~G~~~v~kal~~gk-a~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~ 100 (119)
T 1rlg_A 27 KVKKGTNETTKAVERGL-AKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIINE 100 (119)
T ss_dssp EEEESHHHHHHHHTTTC-CSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred CeeECHHHHHHHHHcCC-CcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEEEecC
Confidence 47999999999999874 4557776542 1 222344558887654 77899999987666777777764
No 31
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=79.52 E-value=3.6 Score=26.28 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=43.6
Q ss_pred EEEeHHHHHHHHHcCCceeEEEEeccc------ccccCCCCCCCCEEE-eCHHHHHhhcCCCCCCceEEEE
Q psy6779 17 MLEGKRILIDALKANLKLKMVFFSQWD------ILKELPLPEDVPQHR-VDYKNIQLWSDLVTPPGIIGIF 80 (144)
Q Consensus 17 ~v~G~~~v~eal~~~~~i~~l~~~~~~------~~~~l~~~~~~~~~~-v~~~~l~~l~~~~~~qGv~a~~ 80 (144)
++.|.+.+..+++++. .+-+++..+. ++..+|...++|++. -+.+.|....+... ..++|+.
T Consensus 20 ~v~G~~~v~kai~~gk-a~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~-~~~~ai~ 88 (101)
T 3v7q_A 20 VVSGEDLVIKEIRNAR-AKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVLGRSIGKEA-RVVVAVT 88 (101)
T ss_dssp EEESHHHHHHHHHTTC-CSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTSSC-CSEEEEC
T ss_pred cccchhhhHHHHhcCc-eeEEEEeccccccchhhhcccccccCCCeeeechHHHHHhhhCccc-eEEEEEe
Confidence 6899999999999875 4557777652 233445566888765 56778999988653 3455554
No 32
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=78.71 E-value=2.2 Score=28.32 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=47.5
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc---c----cccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEEeC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD---I----LKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIFEL 82 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~---~----~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~ 82 (144)
.++.|.+.+..+++++. .+-+++..+. + +..+|...++|+..+ +.+.|....+...+-.++++.+.
T Consensus 20 kl~~G~~~v~kai~~gk-akLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k~~~s~v~I~d~ 93 (121)
T 2lbw_A 20 NVKRGVKEVVKALRKGE-KGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPG 93 (121)
T ss_dssp CEEESHHHHHHHHHHSC-CCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHTCSSCCSEEEECCS
T ss_pred CccccHHHHHHHHHcCC-ceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhCCCCCEEEEEEEcC
Confidence 47999999999999874 4557776542 1 334466678998655 66799998886666677776544
No 33
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=78.44 E-value=1.5 Score=34.50 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=46.3
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc----cccc---CCCCCCCCEEEeCHH-----HHHhhcCCCCCCceEEEEeCC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD----ILKE---LPLPEDVPQHRVDYK-----NIQLWSDLVTPPGIIGIFELP 83 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~----~~~~---l~~~~~~~~~~v~~~-----~l~~l~~~~~~qGv~a~~~~~ 83 (144)
..+||..-|.+|++.|. ++.++++++- ++.+ .+++.|..+..+|.. .|+. ..||+|+...|
T Consensus 265 ~~~YG~~eV~~Ale~GA-VetLlV~d~l~rr~~~~~L~e~~~~~G~~V~ivs~~~e~G~qL~~------lGGIAaiLRy~ 337 (347)
T 2qi2_A 265 MGVYGRDQTESALQMGA-LSDLIITDEMFRTEDGRRSLSIAQTVGTRIHIVSVSNDPGQIVKK------FGGFAGILRYR 337 (347)
T ss_dssp CEEESHHHHHHHHHTTC-EEEEEEEHHHHTSHHHHHHHHHHHHHTCEEEEECTTSHHHHHHHH------TTSEEEEECSC
T ss_pred CEEEcHHHHHHHHHcCC-CeEEEEecccccchhHHHHHHHHHHcCCEEEEECCCCcchHHHHh------cCCEEEEEecc
Confidence 77999999999999874 7999998752 1222 244568899999876 5543 36899998866
Q ss_pred C
Q psy6779 84 A 84 (144)
Q Consensus 84 ~ 84 (144)
-
T Consensus 338 ~ 338 (347)
T 2qi2_A 338 V 338 (347)
T ss_dssp C
T ss_pred c
Confidence 4
No 34
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=77.79 E-value=5.7 Score=26.85 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=46.4
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc---c----cccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEEeC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD---I----LKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIFEL 82 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~---~----~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~ 82 (144)
.++.|.+.+..+++++. .+-+++..+. + +..+|...++|+..+ +...|...++....-.++++.+.
T Consensus 32 kl~~G~~~v~kai~~gk-akLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~ 105 (134)
T 2ale_A 32 QLKKGANEATKTLNRGI-SEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTN 105 (134)
T ss_dssp CEEESHHHHHHHHHHTC-EEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEECC
T ss_pred CcccCchHHHHHHHhCC-CeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEEcC
Confidence 47999999999999875 5667776552 1 223455668997655 67899999987654446676653
No 35
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=76.03 E-value=4.3 Score=32.32 Aligned_cols=69 Identities=10% Similarity=0.025 Sum_probs=48.0
Q ss_pred CEEEEeHHHHHHHHHcCCceeEEEEeccc----c------cccC---CCCCCCCEEEeCHHHHH--hhcCCCCCCceEEE
Q psy6779 15 WLMLEGKRILIDALKANLKLKMVFFSQWD----I------LKEL---PLPEDVPQHRVDYKNIQ--LWSDLVTPPGIIGI 79 (144)
Q Consensus 15 ~~~v~G~~~v~eal~~~~~i~~l~~~~~~----~------~~~l---~~~~~~~~~~v~~~~l~--~l~~~~~~qGv~a~ 79 (144)
...+||..-|.+|++.|. ++.++++++. . +.++ +...|..+..+|..--. +| ....||+|+
T Consensus 296 ~~a~yG~~eV~~Ale~GA-VetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL---~~lgGIAAi 371 (386)
T 2vgn_A 296 DKAWYGEKEVVKAAEYGA-ISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEEL---DQLTGIACI 371 (386)
T ss_dssp SSEEESHHHHHHHHHTTC-EEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHH---HHTTTEEEE
T ss_pred CcEEeCHHHHHHHHHcCC-cEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhH---hccCcEEEE
Confidence 456999999999999874 8999998752 0 1222 34568899999875221 22 134799999
Q ss_pred EeCCCCCC
Q psy6779 80 FELPAHPI 87 (144)
Q Consensus 80 ~~~~~~~~ 87 (144)
...|-.++
T Consensus 372 LRy~i~~~ 379 (386)
T 2vgn_A 372 LKYPLPDL 379 (386)
T ss_dssp ESSCCCCS
T ss_pred EecCCCcc
Confidence 98775443
No 36
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=72.56 E-value=3.9 Score=27.28 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=46.9
Q ss_pred CEEEEeHHHHHHHHHcCCceeEEEEeccc----------ccccC---CCCCCCCEEEeCHHHHH--hhcCCCCCCceEEE
Q psy6779 15 WLMLEGKRILIDALKANLKLKMVFFSQWD----------ILKEL---PLPEDVPQHRVDYKNIQ--LWSDLVTPPGIIGI 79 (144)
Q Consensus 15 ~~~v~G~~~v~eal~~~~~i~~l~~~~~~----------~~~~l---~~~~~~~~~~v~~~~l~--~l~~~~~~qGv~a~ 79 (144)
-..+||..-|..|++.|. |++++++++- ++.++ +++.|..++.+|.+... ++ ..-.||+|+
T Consensus 37 g~~~yG~~eV~~Ale~GA-VetLLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~ivs~~~~~G~qL---~~~gGIaAi 112 (124)
T 1x52_A 37 DRAFYGLKQVEKANEAMA-IDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQL---SQLTGVAAI 112 (124)
T ss_dssp GGEEESHHHHHHHHHTTC-EEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH---HTTTTEEEE
T ss_pred CcEEECHHHHHHHHHcCC-ccEEEechhhhcCCChHHHHHHHHHHHHHHHcCCEEEEECCCCccHHHH---hcCCCEEEE
Confidence 356999999999999874 8999998651 11112 34568888888874332 33 234799999
Q ss_pred EeCCCCC
Q psy6779 80 FELPAHP 86 (144)
Q Consensus 80 ~~~~~~~ 86 (144)
.+.|-.+
T Consensus 113 LRy~i~~ 119 (124)
T 1x52_A 113 LRFPVPS 119 (124)
T ss_dssp ESSCCTT
T ss_pred EecCCcc
Confidence 9876543
No 37
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=70.78 E-value=4.8 Score=31.68 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=46.4
Q ss_pred CEEEEeHHHHHHHHHcCCceeEEEEeccc--------ccccC---CCCCCCCEEEeCHH-----HHHhhcCCCCCCceEE
Q psy6779 15 WLMLEGKRILIDALKANLKLKMVFFSQWD--------ILKEL---PLPEDVPQHRVDYK-----NIQLWSDLVTPPGIIG 78 (144)
Q Consensus 15 ~~~v~G~~~v~eal~~~~~i~~l~~~~~~--------~~~~l---~~~~~~~~~~v~~~-----~l~~l~~~~~~qGv~a 78 (144)
-..+||..-|.+|++.|. +++++++++- .+.++ +++.|..++.+|.. .|+.+ .||+|
T Consensus 264 ~~a~YG~~eV~~Ale~GA-VetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL~~l------GGIaA 336 (352)
T 3oby_A 264 ERVAYGLDEVREAHNYRA-IEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTEFEPGKRLMSL------GGIAA 336 (352)
T ss_dssp CSEEESHHHHHHHHTTTC-EEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTTSHHHHHHHHT------TSEEE
T ss_pred CcEEECHHHHHHHHHcCC-ceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCCCcchhHHhcC------CCEEE
Confidence 456999999999999874 8999998652 11222 34568899999863 55444 58999
Q ss_pred EEeCCCCC
Q psy6779 79 IFELPAHP 86 (144)
Q Consensus 79 ~~~~~~~~ 86 (144)
+...|-..
T Consensus 337 iLRy~~~~ 344 (352)
T 3oby_A 337 LLRFNVKG 344 (352)
T ss_dssp EESSCCCC
T ss_pred EEecCCcc
Confidence 99876543
No 38
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=70.49 E-value=6.7 Score=30.99 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=44.2
Q ss_pred CEEEEeHHHHHHHHHcCCceeEEEEecccc------------cccCCCCCCCCEEEeCHH-----HHHhhcCCCCCCceE
Q psy6779 15 WLMLEGKRILIDALKANLKLKMVFFSQWDI------------LKELPLPEDVPQHRVDYK-----NIQLWSDLVTPPGII 77 (144)
Q Consensus 15 ~~~v~G~~~v~eal~~~~~i~~l~~~~~~~------------~~~l~~~~~~~~~~v~~~-----~l~~l~~~~~~qGv~ 77 (144)
-..+||..-|.+|++.|. +++++++++.. +.+.+++.|..++.+|.+ .|+.+ .||+
T Consensus 284 g~a~yG~~eV~~Ale~GA-VetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL~~l------GGIA 356 (364)
T 3obw_A 284 ELVTYGLEQVKNAIEMGA-VETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKESPIYFELKNL------TGIL 356 (364)
T ss_dssp SSEEESHHHHHHHHHHTC-EEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTTSTTHHHHHHT------TTEE
T ss_pred CcEEECHHHHHHHHHhCC-CcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCCCCCchhhhcC------CcEE
Confidence 456999999999999874 89999987521 112235678888888863 34433 5888
Q ss_pred EEEeCC
Q psy6779 78 GIFELP 83 (144)
Q Consensus 78 a~~~~~ 83 (144)
|+...|
T Consensus 357 AiLRy~ 362 (364)
T 3obw_A 357 AILRFR 362 (364)
T ss_dssp EEESSC
T ss_pred EEEecc
Confidence 888654
No 39
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=69.47 E-value=9.2 Score=30.02 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=45.4
Q ss_pred CCEEEEeHHHHHHHHHcCCceeEEEEeccc----ccccCCCCCCCCEEEeCHH-----HH-HhhcCCCCCCceEEEEeCC
Q psy6779 14 GWLMLEGKRILIDALKANLKLKMVFFSQWD----ILKELPLPEDVPQHRVDYK-----NI-QLWSDLVTPPGIIGIFELP 83 (144)
Q Consensus 14 ~~~~v~G~~~v~eal~~~~~i~~l~~~~~~----~~~~l~~~~~~~~~~v~~~-----~l-~~l~~~~~~qGv~a~~~~~ 83 (144)
....+||...|.+|++.|. +++++++++. ++.+.+...|..++.+|.+ .| +.+ .||.|+...+
T Consensus 297 ~g~a~yG~~eV~~Al~~Ga-VetLlv~d~rd~~~~L~e~a~~~G~~V~ivs~~~~~g~ql~~~~------gGIaAiLRy~ 369 (373)
T 3agk_A 297 TGMIVYGEKDVEAALEMGA-VKTLLIHESREDLEEWVEKAKSSGAQVIVVPESLAEAEWFLKTF------GGLAGILRFR 369 (373)
T ss_dssp CCCEEESHHHHHHHHHTTC-EEEEEEETTCTTHHHHHHHHTTTTCEEEEECTTSTTHHHHHHHH------TTEEEEECC-
T ss_pred CCcEeeCHHHHHHHHHhCC-ccEEEEeCChhHHHHHHHHHHHcCCEEEEECCCCccHHHHHHhC------CcEEEEEecc
Confidence 3457999999999999874 8999998752 1223346678999999876 44 333 5899988765
No 40
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=69.39 E-value=2.7 Score=29.90 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.6
Q ss_pred HHHHhHhCCCEEEEcCC
Q psy6779 114 LRVCAAVGARQVVCSRG 130 (144)
Q Consensus 114 iRtA~a~Gv~~vil~~~ 130 (144)
.-||-|||++++|++..
T Consensus 25 ~LtARAfGA~~iil~~~ 41 (178)
T 2o3a_A 25 ALTARAFGAKGIYFDTE 41 (178)
T ss_dssp HHHHHHTTCSEEEESSC
T ss_pred HHHHHHhCCCeeEEeCC
Confidence 34899999999999864
No 41
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=68.84 E-value=11 Score=30.18 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=22.4
Q ss_pred CEEEEeHHHHHHHHHcCCceeEEEEecc
Q psy6779 15 WLMLEGKRILIDALKANLKLKMVFFSQW 42 (144)
Q Consensus 15 ~~~v~G~~~v~eal~~~~~i~~l~~~~~ 42 (144)
...+||...|.+|++.|. +++|+++++
T Consensus 299 g~a~yG~~eV~~Al~~Ga-VetLLv~d~ 325 (437)
T 1dt9_A 299 GKYCFGVEDTLKALEMGA-VEILIVYEN 325 (437)
T ss_dssp CCEEESHHHHHHHHHSSC-CSEEEEESC
T ss_pred CcEEecHHHHHHHHHhCC-ccEEEEecC
Confidence 467999999999999874 688887754
No 42
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=67.41 E-value=6.8 Score=26.12 Aligned_cols=68 Identities=7% Similarity=0.008 Sum_probs=47.4
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEeccc------ccccCC--CCCCCCEEEeCHHHHHhhcCCCCCCceEEEEeCCC
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWD------ILKELP--LPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPA 84 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~------~~~~l~--~~~~~~~~~v~~~~l~~l~~~~~~qGv~a~~~~~~ 84 (144)
-++.|.+.+..+++++. .+-|++.++. ++..++ ...+++++.-|.+.|...++....-.++|+.+.-.
T Consensus 27 klv~G~~~v~kaIr~gk-akLVIiA~Das~~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~~v~~vaI~D~G~ 102 (125)
T 3vi6_A 27 KYVLGYKQTLKMIRQGK-AKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGD 102 (125)
T ss_dssp EEEESHHHHHHHHHTTC-CSEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCSSCCCEEEEEECTT
T ss_pred CeeeCHHHHHHHHHcCC-ceEEEEeCCCCHHHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCcccEEEEEEeCchh
Confidence 47899999999999875 4667777652 122222 22234445678899999998776667788887754
No 43
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=67.15 E-value=3 Score=30.17 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.7
Q ss_pred HHHHhHhCCCEEEEcCC
Q psy6779 114 LRVCAAVGARQVVCSRG 130 (144)
Q Consensus 114 iRtA~a~Gv~~vil~~~ 130 (144)
.-||-|||+++||++..
T Consensus 22 ~LtARAfGA~~iil~~~ 38 (201)
T 2yy8_A 22 ALTARAFGADGIIIASE 38 (201)
T ss_dssp HHHHHHTTCSEEEESSS
T ss_pred HHHHHHhcCCeEEEcCC
Confidence 34999999999999865
No 44
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=61.75 E-value=6 Score=31.53 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=46.5
Q ss_pred CEEEEeHHHHHHHHHcCCceeEEEEeccc-------------ccccCCCCCCCCEEEeCHH-----HHHhhcCCCCCCce
Q psy6779 15 WLMLEGKRILIDALKANLKLKMVFFSQWD-------------ILKELPLPEDVPQHRVDYK-----NIQLWSDLVTPPGI 76 (144)
Q Consensus 15 ~~~v~G~~~v~eal~~~~~i~~l~~~~~~-------------~~~~l~~~~~~~~~~v~~~-----~l~~l~~~~~~qGv 76 (144)
-..+||..-|..|++.|. +++++++++. ++.+.++..|..++.+|.. .|+.+ .|+
T Consensus 290 g~a~YG~~eV~~Ale~GA-VetLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~qL~~l------gGi 362 (390)
T 3mca_B 290 RKAWYGPNHVLKAFELGA-IGELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLL------SGI 362 (390)
T ss_dssp TSEEESHHHHHHHHHTTC-BSSCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEEEECTTSHHHHHHHHT------TSE
T ss_pred CcEEECHHHHHHHHHcCC-CeEEEEecccccCCChhHHHHHHHHHHHHHhcCCEEEEECCCCCchhhhhcC------CcE
Confidence 356999999999999874 6888888652 1112235568899999864 44433 589
Q ss_pred EEEEeCCCCCC
Q psy6779 77 IGIFELPAHPI 87 (144)
Q Consensus 77 ~a~~~~~~~~~ 87 (144)
+|+...|-..+
T Consensus 363 aAiLRy~i~~~ 373 (390)
T 3mca_B 363 AAILTYPVDEE 373 (390)
T ss_dssp EEEBSSCCCCC
T ss_pred EEEEeccCCcc
Confidence 99998775443
No 45
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=52.28 E-value=8.9 Score=30.10 Aligned_cols=61 Identities=8% Similarity=0.104 Sum_probs=42.7
Q ss_pred EEEEeHHHHHHHHHcCCceeEEEEecccc-------cc---cCCCCCCCCEEEeCHH-----HHHhhcCCCCCCceEEEE
Q psy6779 16 LMLEGKRILIDALKANLKLKMVFFSQWDI-------LK---ELPLPEDVPQHRVDYK-----NIQLWSDLVTPPGIIGIF 80 (144)
Q Consensus 16 ~~v~G~~~v~eal~~~~~i~~l~~~~~~~-------~~---~l~~~~~~~~~~v~~~-----~l~~l~~~~~~qGv~a~~ 80 (144)
..+||..-|.+|++.| .+++++++++.. +. +.+++.|..++.+|.+ .|+.+ .||+|+.
T Consensus 280 ~a~yG~~eV~~Ale~G-AVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL~~l------gGiaAiL 352 (357)
T 3j15_A 280 LVAYGLKEVEEAVNYG-AVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGEKLKAL------GGLAALL 352 (357)
T ss_dssp TEEESTHHHHHHHHHT-CEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHH------CSEEEEE
T ss_pred cEEeCHHHHHHHHHhC-CCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcchhhhcC------CcEEEEE
Confidence 4689999999999997 489999986521 11 1234567888888753 45444 5888887
Q ss_pred eCC
Q psy6779 81 ELP 83 (144)
Q Consensus 81 ~~~ 83 (144)
..|
T Consensus 353 Ry~ 355 (357)
T 3j15_A 353 RFR 355 (357)
T ss_dssp SSC
T ss_pred ecc
Confidence 654
No 46
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=49.40 E-value=7.8 Score=28.95 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred cCCCCCcHHHHHHHHhHhCCCEEE
Q psy6779 103 NIRDPGNMGSILRVCAAVGARQVV 126 (144)
Q Consensus 103 ~i~DP~NlGaIiRtA~a~Gv~~vi 126 (144)
+=-|..|+..|+|+|.-.|+..||
T Consensus 194 GGIdl~N~~~I~~i~l~aGv~~vi 217 (249)
T 3m0z_A 194 GGIDLENYSEILKIALDAGVSKII 217 (249)
T ss_dssp SSCCTTTHHHHHHHHHHHTCSCBC
T ss_pred CCccHhhHHHHHHHHHHcCCCeec
Confidence 334999999999999999999876
No 47
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=48.09 E-value=8 Score=29.25 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.1
Q ss_pred cCCCCCcHHHHHHHHhHhCCCEEE
Q psy6779 103 NIRDPGNMGSILRVCAAVGARQVV 126 (144)
Q Consensus 103 ~i~DP~NlGaIiRtA~a~Gv~~vi 126 (144)
+=-|..|+..|+|+|.-.|+..||
T Consensus 217 GGIdl~Nf~~I~~i~l~aGv~~vi 240 (275)
T 3m6y_A 217 GGIDKENFETIVRIALEANVEQVI 240 (275)
T ss_dssp SSCCTTTHHHHHHHHHHTTCSCBC
T ss_pred CCccHhHHHHHHHHHHHcCCCeec
Confidence 334999999999999999999876
No 48
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=44.21 E-value=16 Score=27.75 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.6
Q ss_pred cHHHHHHHHhHhCCCEEEEcCC
Q psy6779 109 NMGSILRVCAAVGARQVVCSRG 130 (144)
Q Consensus 109 NlGaIiRtA~a~Gv~~vil~~~ 130 (144)
=+|-|.|.|+-|+||-||+-++
T Consensus 27 ~~gqIARAaaIF~VdEIvVy~d 48 (268)
T 1k3r_A 27 KVVLIARAASIFGVKRIVIYHD 48 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHhccccEEEEEeC
Confidence 4799999999999999999644
No 49
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=43.44 E-value=7.4 Score=25.58 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=47.4
Q ss_pred hcCCEEEEeHHHHHHHHHcCCceeEEEEeccc---c----cccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEEeC
Q psy6779 12 KKGWLMLEGKRILIDALKANLKLKMVFFSQWD---I----LKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIFEL 82 (144)
Q Consensus 12 ~~~~~~v~G~~~v~eal~~~~~i~~l~~~~~~---~----~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~ 82 (144)
+.-.++..|.+.+..+++++. .+-+++..+. + +..+|...++|+..+ +.+.|....+... --++|+.+.
T Consensus 21 ~~~~~l~~G~~~v~kaI~~gk-a~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~-~a~vai~d~ 97 (113)
T 3jyw_G 21 PKPYAVKYGLNHVVALIENKK-AKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKT-SAVAALTEV 97 (113)
T ss_dssp SSSSCEEESHHHHHHTTTTTC-CSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHHHHCSSS-CCSEEEECS
T ss_pred CCCchhhchHHHHHHHHHcCC-ceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCC-cEEEEEEeC
Confidence 455689999999999999874 4557776542 1 233456778998776 4567888887653 455666554
No 50
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=43.07 E-value=10 Score=29.75 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=45.7
Q ss_pred CEEEEeHHHHHHHHHcCCceeEEEEecccc----------cccC---CCCCCCCEEEeCHHHHH--hhcCCCCCCceEEE
Q psy6779 15 WLMLEGKRILIDALKANLKLKMVFFSQWDI----------LKEL---PLPEDVPQHRVDYKNIQ--LWSDLVTPPGIIGI 79 (144)
Q Consensus 15 ~~~v~G~~~v~eal~~~~~i~~l~~~~~~~----------~~~l---~~~~~~~~~~v~~~~l~--~l~~~~~~qGv~a~ 79 (144)
-..+||...|.+|++.|. +++++++++.. +.++ +...|..++.+|.+-.. ++ ..-.|++|+
T Consensus 271 g~a~yG~~eV~~Al~~GA-VetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL---~~~gGIaAi 346 (358)
T 3agj_B 271 DTVAYTPGEVLAVARMGA-VDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERL---VSFGGVIAL 346 (358)
T ss_dssp GGEEESHHHHHHHHHHTC-EEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH---GGGTTEEEE
T ss_pred CcEEECHHHHHHHHHhCC-ceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh---hcCCcEEEE
Confidence 356999999999999874 89999986410 1122 34568889998875332 23 234689999
Q ss_pred EeCCC
Q psy6779 80 FELPA 84 (144)
Q Consensus 80 ~~~~~ 84 (144)
...|-
T Consensus 347 LRy~i 351 (358)
T 3agj_B 347 LRYPV 351 (358)
T ss_dssp ESSCC
T ss_pred EeccC
Confidence 88663
No 51
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=41.21 E-value=23 Score=27.27 Aligned_cols=35 Identities=23% Similarity=0.481 Sum_probs=24.4
Q ss_pred CeEEEEe--c-CCCCCcH-----H------HHHHHHhHhCCCEEEEcCC
Q psy6779 96 PLNIVCD--N-IRDPGNM-----G------SILRVCAAVGARQVVCSRG 130 (144)
Q Consensus 96 ~~ilvLD--~-i~DP~Nl-----G------aIiRtA~a~Gv~~vil~~~ 130 (144)
.+-+++| + +|.||-. | .+-|.|.|+|++|+++-++
T Consensus 214 ~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H 262 (298)
T 3fs2_A 214 GAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETH 262 (298)
T ss_dssp TSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEE
T ss_pred CCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEec
Confidence 3445554 3 7888542 3 6899999999999999653
No 52
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=37.47 E-value=42 Score=24.03 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=19.7
Q ss_pred cHHHHHHHHhHhCCCEEEEcCC
Q psy6779 109 NMGSILRVCAAVGARQVVCSRG 130 (144)
Q Consensus 109 NlGaIiRtA~a~Gv~~vil~~~ 130 (144)
|+|.|.|+|.-||++..++-.-
T Consensus 30 dihdiARamkt~Gl~~l~LV~P 51 (192)
T 3dcm_X 30 DVHDIARTARTYNLKGYYIVTN 51 (192)
T ss_dssp HHHHHHHHHHHTTCSEEEEECC
T ss_pred cHHHHHHHHHhcCCceEEEECC
Confidence 6999999999999999998643
No 53
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=36.21 E-value=22 Score=27.16 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=23.7
Q ss_pred eEEEEe--c-CCCCCcH-----H------HHHHHHhHhCCCEEEEcCC
Q psy6779 97 LNIVCD--N-IRDPGNM-----G------SILRVCAAVGARQVVCSRG 130 (144)
Q Consensus 97 ~ilvLD--~-i~DP~Nl-----G------aIiRtA~a~Gv~~vil~~~ 130 (144)
+-+++| + +|.||-. | .+-|.|.|+|++|+++-++
T Consensus 197 ~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadGl~iE~H 244 (288)
T 3tml_A 197 APVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGLFMETH 244 (288)
T ss_dssp SCEEEEHHHHTCCCC--------CTTHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEeec
Confidence 334554 3 7888653 3 5789999999999999654
No 54
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=34.89 E-value=15 Score=29.72 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=22.3
Q ss_pred CEEEEeHHHHHHHHHcCCceeEEEEecc
Q psy6779 15 WLMLEGKRILIDALKANLKLKMVFFSQW 42 (144)
Q Consensus 15 ~~~v~G~~~v~eal~~~~~i~~l~~~~~ 42 (144)
--.+||..-|.+|++.|. +++++++++
T Consensus 304 g~a~YG~~eV~~Ale~GA-VetLLIsD~ 330 (441)
T 3e20_C 304 GKYCFGVVDTMNALQEGA-VETLLCFAD 330 (441)
T ss_dssp SCCCCSHHHHHHHHHSSC-CSEEEEETT
T ss_pred CcEEECHHHHHHHHHhCC-ccEEEEecc
Confidence 346999999999999874 788888764
No 55
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=34.39 E-value=35 Score=25.69 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=48.1
Q ss_pred cCCEEEEeHHHHHHHHHcCCceeEEEEeccc---c----cccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEEeCC
Q psy6779 13 KGWLMLEGKRILIDALKANLKLKMVFFSQWD---I----LKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIFELP 83 (144)
Q Consensus 13 ~~~~~v~G~~~v~eal~~~~~i~~l~~~~~~---~----~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~~ 83 (144)
.-.++..|.+.+..+++++. .+-+++..+. + +..+|...++|+..+ +...|...++.. .-.++|+.+.-
T Consensus 128 ~p~~lk~G~keV~KaIekgK-AkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk-~~s~VAItD~g 204 (256)
T 3izc_H 128 KPYAVKYGLNHVVALIENKK-AKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQK-TSAVAALTEVR 204 (256)
T ss_dssp CSCCEEESHHHHHHHHHHTC-CSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCS-SCCSEEEESSC
T ss_pred CChhhhccHHHHHHHHHhCc-ceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCC-CcEEEEeecCC
Confidence 34578999999999999875 3557776653 1 133456678997655 667899999875 35566666554
No 56
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=32.14 E-value=1.5e+02 Score=22.23 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=47.0
Q ss_pred CEEEEeHHHHHHHHHcCCceeEEEEeccc-------ccccCCCCCCCCEEEeC-HHHHHhhcCCCCCCceEEEEeCC
Q psy6779 15 WLMLEGKRILIDALKANLKLKMVFFSQWD-------ILKELPLPEDVPQHRVD-YKNIQLWSDLVTPPGIIGIFELP 83 (144)
Q Consensus 15 ~~~v~G~~~v~eal~~~~~i~~l~~~~~~-------~~~~l~~~~~~~~~~v~-~~~l~~l~~~~~~qGv~a~~~~~ 83 (144)
.++-.|.|.|.-+++++. -.-+++..+- .+..+|.+.++|+..|. .+.|..+++..+ --++|+....
T Consensus 126 ~~lk~GvneVTklVE~kK-AqLVVIA~DVdPiElV~fLPaLC~k~gVPY~iVk~KarLG~~vgrKt-ct~Va~t~v~ 200 (258)
T 3iz5_H 126 IVVKYGLNHVTYLIEQSK-AQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKT-ASVLCLTTVK 200 (258)
T ss_dssp CCEEESHHHHHHHHHTTC-EEEEEEESCCSSTHHHHHHHHHHTTTTCCEEEESCHHHHHHHTTCSS-CCSEEEEESC
T ss_pred ceeecccHHHHHHHHcCc-ceEEEEeCCCChHHHHhHHHHHHHhcCCCeEEECCHHHHHHHhCCcc-ceEEEEEecC
Confidence 478899999999999875 3445555442 23456788899988764 568888888665 4555655543
No 57
>3ajf_A Non-structural protein 3; RNA silencing suppression, negative strand RNA virus, viral; 2.00A {Rice hoja blanca virus}
Probab=29.88 E-value=8.7 Score=23.95 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=18.8
Q ss_pred eEEEEecCCCCCcHHHHHHHHhH
Q psy6779 97 LNIVCDNIRDPGNMGSILRVCAA 119 (144)
Q Consensus 97 ~ilvLD~i~DP~NlGaIiRtA~a 119 (144)
++=+|-+-.||.|+|+.+||+-+
T Consensus 39 FL~ml~~PDd~e~Ls~FLkt~IW 61 (94)
T 3ajf_A 39 FLQMIRKPDDPENLSVFLKSAIW 61 (94)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHH
Confidence 34466777899999999999865
No 58
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=29.01 E-value=68 Score=22.15 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=23.7
Q ss_pred CCEEEEeHHHHHHHHHcCCceeEEEEecc
Q psy6779 14 GWLMLEGKRILIDALKANLKLKMVFFSQW 42 (144)
Q Consensus 14 ~~~~v~G~~~v~eal~~~~~i~~l~~~~~ 42 (144)
.-..+||..-|..|++.|. +++++++++
T Consensus 44 ~g~~~yG~~ev~~Ale~GA-VetLlv~e~ 71 (166)
T 3ir9_A 44 SGKVAYGESQVRANLEINS-VDVLLLSED 71 (166)
T ss_dssp TTCEEESHHHHHHHHTTTC-EEEEEEETT
T ss_pred CCcEEEcHHHHHHHHHhCC-ceEEEEecC
Confidence 3467999999999999874 899999875
No 59
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=26.65 E-value=24 Score=16.72 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=8.0
Q ss_pred CcHH--HHHHHHhH
Q psy6779 108 GNMG--SILRVCAA 119 (144)
Q Consensus 108 ~NlG--aIiRtA~a 119 (144)
.|+| +|||-|.-
T Consensus 9 ~~~gleaiirkalm 22 (26)
T 2ovm_B 9 SNLGLEDIIRKALM 22 (26)
T ss_pred cccCHHHHHHHHHh
Confidence 3554 79998753
No 60
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=24.47 E-value=48 Score=21.88 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=38.5
Q ss_pred EEEeHHHHHHHHHcCCceeEEEEeccc-------ccccCCCCCCCCEEEe-CHHHHHhhcCC
Q psy6779 17 MLEGKRILIDALKANLKLKMVFFSQWD-------ILKELPLPEDVPQHRV-DYKNIQLWSDL 70 (144)
Q Consensus 17 ~v~G~~~v~eal~~~~~i~~l~~~~~~-------~~~~l~~~~~~~~~~v-~~~~l~~l~~~ 70 (144)
++.|.+.+..+++++. .+-+++..+. .+..+|...++|++.+ +...|....+.
T Consensus 25 l~~G~~~v~Kai~~gk-a~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G~ 85 (126)
T 2xzm_U 25 ISKGLHEVLRTIEAKQ-ALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLGH 85 (126)
T ss_dssp EEESHHHHHHHHHHTC-CSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHTC
T ss_pred EeecHHHHHHHHHcCC-ceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCC
Confidence 6899999999999874 4556776542 1334566778998876 45688888874
No 61
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=24.27 E-value=67 Score=23.71 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCcHHH---HHHHHhHhCCCEEEEcCCcc
Q psy6779 107 PGNMGS---ILRVCAAVGARQVVCSRGCV 132 (144)
Q Consensus 107 P~NlGa---IiRtA~a~Gv~~vil~~~~~ 132 (144)
+.++.. ++|.|...|++.|+++++..
T Consensus 16 ~~~~~~sl~~~~~a~~~G~~~i~~T~H~~ 44 (262)
T 3qy7_A 16 AGDSADSIEMARAAVRQGIRTIIATPHHN 44 (262)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEECCCBSE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 456664 99999999999999998764
No 62
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri}
Probab=23.99 E-value=69 Score=23.92 Aligned_cols=31 Identities=6% Similarity=-0.045 Sum_probs=25.6
Q ss_pred EecCCCCCcHHHHHHHHhHhCCCEEEEcCCc
Q psy6779 101 CDNIRDPGNMGSILRVCAAVGARQVVCSRGC 131 (144)
Q Consensus 101 LD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~ 131 (144)
+..-+++.++-.+.|.|+..|++.++++++.
T Consensus 7 ~~~~~~~~~~~~~A~~AE~~Gfd~~w~~eh~ 37 (327)
T 1z69_A 7 FVPSDPALKIAYYAKLSEQQGFDHVWITDHY 37 (327)
T ss_dssp ECTTSCHHHHHHHHHHHHHTTCSEEEECCCT
T ss_pred eCCCCCHHHHHHHHHHHHHCCCCEEEecccc
Confidence 3344567788889999999999999999864
No 63
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=23.75 E-value=52 Score=26.05 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=17.2
Q ss_pred HHHHHHhHhCCCEEEEcCC
Q psy6779 112 SILRVCAAVGARQVVCSRG 130 (144)
Q Consensus 112 aIiRtA~a~Gv~~vil~~~ 130 (144)
.+-|.|.|+|++|+++-++
T Consensus 330 ~~a~AAvA~GA~gl~iE~H 348 (385)
T 3nvt_A 330 PCAKAALAIEADGVMAEVH 348 (385)
T ss_dssp HHHHHHHHTTCSEEEEEBC
T ss_pred HHHHHHHHhCCCEEEEEec
Confidence 7899999999999999764
No 64
>2b81_A Luciferase-like monooxygenase; TIM barrel, structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG; HET: MES; 2.50A {Bacillus cereus}
Probab=23.09 E-value=88 Score=23.64 Aligned_cols=27 Identities=7% Similarity=-0.071 Sum_probs=24.4
Q ss_pred CCCCCcHHHHHHHHhHhCCCEEEEcCC
Q psy6779 104 IRDPGNMGSILRVCAAVGARQVVCSRG 130 (144)
Q Consensus 104 i~DP~NlGaIiRtA~a~Gv~~vil~~~ 130 (144)
.+++.++-.+.|.|+..|++.++++++
T Consensus 40 ~~~~~~~~~~a~~AE~~Gfd~~w~~dh 66 (323)
T 2b81_A 40 APTMEKQVELVQKAEQYGFTGVWLRDV 66 (323)
T ss_dssp CCCCTTHHHHHHHHHHHTCCEEEECCC
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 467889999999999999999999875
No 65
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=22.31 E-value=97 Score=23.23 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=44.7
Q ss_pred CCEEEEeHHHHHHHHHcCCceeEEEEeccc-------ccccCCCCCCCCEEEe-CHHHHHhhcCCCCCCceEEEE
Q psy6779 14 GWLMLEGKRILIDALKANLKLKMVFFSQWD-------ILKELPLPEDVPQHRV-DYKNIQLWSDLVTPPGIIGIF 80 (144)
Q Consensus 14 ~~~~v~G~~~v~eal~~~~~i~~l~~~~~~-------~~~~l~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~ 80 (144)
-.++..|.+.|..+++++. .+-+++..+. .+..+|...++|+..+ +.+.|..+++..+ --++|+.
T Consensus 122 p~~lk~GvneVtKaIekgK-AqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~sK~~LG~avGrKt-~s~Vait 194 (255)
T 4a17_F 122 PIVLKYGLNHITTLIENKQ-AKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKKT-ATAVALT 194 (255)
T ss_dssp CCCEEECHHHHHHHHHTSC-CSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEESCHHHHHHHHTSSC-CSEEEEC
T ss_pred CceeecchHHHHHHHHcCC-ceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCc-ceEEEee
Confidence 3478899999999999874 3446665542 1344567789998876 5568999888654 2344444
No 66
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=22.14 E-value=1.9e+02 Score=21.09 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=32.4
Q ss_pred CCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCc
Q psy6779 94 SLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGC 131 (144)
Q Consensus 94 ~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~ 131 (144)
.+.+++|.|.-.++..+-..++.|...|++.|.+-...
T Consensus 29 ~~~lylIt~~~~~~~~~~~~~~~al~~Gv~~vqlR~K~ 66 (243)
T 3o63_A 29 SARLYLCTDARRERGDLAQFAEAALAGGVDIIQLRDKG 66 (243)
T ss_dssp HCCEEEEECCCTTTCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred CCcEEEEECCCcccchHHHHHHHHHHCCCCEEEEccCC
Confidence 35689999987777889999999999999999997654
No 67
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel, TIM barrel, oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP: c.1.16.3
Probab=22.00 E-value=78 Score=24.01 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=26.8
Q ss_pred EEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCc
Q psy6779 99 IVCDNIRDPGNMGSILRVCAAVGARQVVCSRGC 131 (144)
Q Consensus 99 lvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~ 131 (144)
+.+..-+++.++-.+.|.|+..|++.++++++.
T Consensus 8 ~~~~~~~~~~~~~~~a~~AE~~Gfd~~w~~eh~ 40 (349)
T 1ezw_A 8 IELLPDDKPTKIAHLIKVAEDNGFEYAWICDHY 40 (349)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEecccc
Confidence 344445677888899999999999999999864
No 68
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=21.99 E-value=1.4e+02 Score=20.43 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcC
Q psy6779 95 LPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSR 129 (144)
Q Consensus 95 ~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~ 129 (144)
+.++++-|.. .+ ++-..++.+...|++.|-+..
T Consensus 15 ~~l~~It~~~-~~-~~~~~~~~~~~~G~~~i~l~~ 47 (215)
T 1xi3_A 15 LKLYVITDRR-LK-PEVESVREALEGGATAIQMRI 47 (215)
T ss_dssp TSEEEECCTT-TS-CHHHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCc-hh-hHHHHHHHHHHCCCCEEEECC
Confidence 3578888887 77 999999999999999998863
No 69
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=20.42 E-value=53 Score=24.97 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=16.4
Q ss_pred HHHHHHhHhCCCEEEEcCC
Q psy6779 112 SILRVCAAVGARQVVCSRG 130 (144)
Q Consensus 112 aIiRtA~a~Gv~~vil~~~ 130 (144)
.+-|.|.|+|++|+++-++
T Consensus 225 ~~a~AAvA~GA~gl~IE~H 243 (285)
T 3sz8_A 225 DLARAGIAVGIAGLFLEAH 243 (285)
T ss_dssp HHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEec
Confidence 5789999999999999654
No 70
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=20.39 E-value=30 Score=19.27 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=14.1
Q ss_pred HhCCCEEEEcCCccCCCCcce
Q psy6779 119 AVGARQVVCSRGCVDIYDNKV 139 (144)
Q Consensus 119 a~Gv~~vil~~~~~d~~~pkv 139 (144)
.|..++-++.++-.||-|||+
T Consensus 15 Yf~~~GtfiCeGesdp~npk~ 35 (51)
T 4sgb_I 15 YYSANGAFICEGQSDPKKPKA 35 (51)
T ss_dssp EECTTCCEEEECCBCTTSCCC
T ss_pred eecCCCCEEeccccCCCCCCc
Confidence 355666677777777777764
Done!