RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy678
         (60 letters)



>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide
          phosphodiesterase 2A, GAF A and GAF B domains {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 187

 Score = 26.1 bits (56), Expect = 0.20
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 15 KLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE 57
          K+L++  +LF+       + +K++Q  Q   +  +  +LL+ E
Sbjct: 7  KILQLCGELFD--LDATSLQLKVLQYLQQETQATHCCLLLVSE 47


>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide
          phosphodiesterase 2A, GAF A and GAF B domains {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 154

 Score = 25.0 bits (53), Expect = 0.56
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 30 IEQVVVKIMQRAQSLLKCENAAVLLIDE 57
          +  ++ +I+  A++L   E  +V L+D+
Sbjct: 2  VSVLLQEIITEARNLSNAEICSVFLLDQ 29


>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
          Length = 225

 Score = 22.7 bits (47), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 29  SIEQVVVKIMQRAQSLLKC 47
           SIEQV+ K +Q A+  L  
Sbjct: 206 SIEQVIEKALQYARQKLAL 224


>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase
           {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
          Length = 160

 Score = 21.5 bits (45), Expect = 8.2
 Identities = 3/34 (8%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCEN 49
           L   ++++  ++ +    +  ++      L+ E 
Sbjct: 124 LCHQIYEIVYKKKNPRDALADLLSCG---LQDEG 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.126    0.317 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 178,262
Number of extensions: 5302
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 9
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)