BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6781
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 274 HKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHT 333
K +LNKVD+ T++WV K+ + TH KG +L KL
Sbjct: 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRVI----TTH---KGEPRKVL--LKKLSF 96
Query: 334 ERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393
+R V +G PN GKS+IIN L+ K+ PG TK Q+ +L + ++D PG++
Sbjct: 97 DRLA-RVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGIL 155
Query: 394 Y-DMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLK 452
Y ++ + + + +L G + VE I+D + ER ++ ++ GI+ +F +
Sbjct: 156 YKNIFSEDLAAKLLLVGSLPVERIED-----QRIFERAFEI-FARSIGIE--SSFSEFFE 207
Query: 453 KLAFKWGKIKKKGEPVITASAKMVLNDWQRGK 484
A K G +KK G P I + + + +GK
Sbjct: 208 DFARKRGLLKKGGVPDIERALMLFFTEVAQGK 239
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 256 PMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHP 315
PM +R IE+ L+ +K +LNK D VTQ+W KE+ S++
Sbjct: 36 PMSSRNPMIEDILK----NKPRIMLLNKADKADAAVTQQW-----KEHFENQGIRSLSIN 86
Query: 316 FGKGSIIN---------LLRQFSKLHTER---KQISVGFIGYPNVGKSSIINALRNKKVC 363
G +N L +F ++ + + I IG PNVGKS++IN L K +
Sbjct: 87 SVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIA 146
Query: 364 KTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVE-TDTEKVLRGVVR--VENIDDPV 420
KT PG T Q++ + + + L+D PG+++ E + G ++ + N+ D
Sbjct: 147 KTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVA 206
Query: 421 QYIDAVLERIKKVHLVKTYGIDEW-EDTEDFLKKLAFKWGKIKKKG 465
+ LE L + YG+DE ED + + K G + G
Sbjct: 207 VFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGG 252
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394
V F+G NVGKSS++NAL N+K+ + PG+T+ + + + Y +D PG Y
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGY 80
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDM 396
I V F G N GKSS +N L N+K + +T+ PG T++ + L+D PG Y
Sbjct: 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 86
Query: 397 TNVET------------DTEKVLRGVVRVENIDDPVQYID 424
E + + L+G+V + +I P++ +D
Sbjct: 87 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD 126
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 340 VGFIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLMRRIYLIDCPG 391
+ G NVGKSS IN+L N+K + +T+ PG+T+ + + ++ +D PG
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPG 78
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 336 KQISVGFIGYPNVGKSSIINALRN--KKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393
K++++G IG PN GK+++ N L ++V A V E K Q+ T ++ L+D PG
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG-T 60
Query: 394 YDMTNVETDT---EKVLRGVVRVENIDDPVQYIDAV-LER 429
Y +T + + T E++ + + D + +DA LER
Sbjct: 61 YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER 100
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK 373
I V +G PNVGKS++ NA+ NK+ +P+PG T+
Sbjct: 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 336 KQISVGFIGYPNVGKSSIINALRN--KKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393
K++++G IG PN GK+++ N L ++V A V E K Q+ T ++ L+D PG
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG-T 60
Query: 394 YDMTNVETDT---EKVLRGVVRVENIDDPVQYIDAV-LER 429
Y +T + + T E++ + + D + +DA LER
Sbjct: 61 YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER 100
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 336 KQISVGFIGYPNVGKSSIINALRN--KKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393
K++++G IG PN GK+++ N L ++V A V E K Q+ T ++ L+D PG
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG-T 60
Query: 394 YDMTNVETDT---EKVLRGVVRVENIDDPVQYIDAV-LER 429
Y +T + + T E++ + + D + +DA LER
Sbjct: 61 YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER 100
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 336 KQISVGFIGYPNVGKSSIINALRN--KKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393
++++VG IG PN GK+++ N L ++V A V E K + T ++ L+D PG
Sbjct: 2 QKLTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPG-T 60
Query: 394 YDMTNVETDT---EKVLRGVVRVENIDDPVQYIDAV-LER 429
Y +T + + T E++ + + D + +DA LER
Sbjct: 61 YSLTTISSQTSLDEQIACHYILSGDADMLINVVDASNLER 100
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDCPGV 392
K + IG PNVGKS+I NAL + V PG E K ++ + ++D PG
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG- 59
Query: 393 VYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
VY +T D E + R + E D V +DA LER
Sbjct: 60 VYSLTANSID-EIIARDYIINEKPDLVVNIVDATALER 96
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDCPGV 392
K + IG PNVGKS+I NAL + V PG E K ++ + ++D PG
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG- 59
Query: 393 VYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
VY +T D E + R + E D V +DA LER
Sbjct: 60 VYSLTANSID-EIIARDYIINEKPDLVVNIVDATALER 96
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGET--KVWQYITLMRR-IYLIDCPGV 392
V +G PNVGKS+++N L KV +P P T ++ +T RR I +D PG+
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDCPGV 392
K + IG PNVGKS+I NAL + V PG E K ++ + ++D PG
Sbjct: 3 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG- 60
Query: 393 VYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
VY +T D E + R + E D V +DA LER
Sbjct: 61 VYSLTANSID-EIIARDYIINEKPDLVVNIVDATALER 97
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 311 SMTHPFGKGSIINLLRQFSKLHTERKQ----ISVGFIGYPNVGKSSIINALRNKKVCKTA 366
S TH G G +++ + + K E K I IG PNVGKSS++NA+ ++ +
Sbjct: 165 SGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS 224
Query: 367 PVPGETK 373
V G T+
Sbjct: 225 NVAGTTR 231
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGV 392
V +G PNVGKS+I N + +++ PG T+ Y + L LID G+
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 25/153 (16%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY----ITLMRRIYLIDCPGVVYD 395
VG +GYPN GKSS++ A+ + K AP P T ++ R L D PG++
Sbjct: 160 VGLVGYPNAGKSSLLAAM-TRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG 218
Query: 396 MTNVETDTEKVLRGVVR-------VENIDDPVQYIDAVLERI--------KKVHLVKTYG 440
+ + + LR + R ++ D+P++ ++ + + + ++ LV
Sbjct: 219 ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 278
Query: 441 IDEWEDTEDFLKKLAFKWGKIKKKGEPVITASA 473
+D E E+ +K LA + ++G V+ SA
Sbjct: 279 VDLLE--EEAVKALA---DALAREGLAVLPVSA 306
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 317 GKGSIINLLRQ---FSKLHTERK-----QISVGFIGYPNVGKSSIINALRN-KKVCKTAP 367
G GS+ LL Q F+ ++ R Q + F G N GKS+ IN L N K++ +
Sbjct: 1 GPGSMAFLLHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASK 60
Query: 368 VPGETKVWQYITLMRR----IYLIDCPGVVY 394
PG T+ Y ++ +L+D PG Y
Sbjct: 61 TPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 333 TERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDC 389
+ K + IG PNVGKS+I NAL + V PG E K ++ + ++D
Sbjct: 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDL 61
Query: 390 PGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDA-VLER 429
PG VY +T D E + R + E D V +DA LER
Sbjct: 62 PG-VYSLTANSID-EIIARDYIINEKPDLVVNIVDATALER 100
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETK-VWQYITLMRRIY--LIDCPGVVYDMTN 398
+G PNVGKS+++N L N+ +PG T+ V ++R I ++D GV + TN
Sbjct: 248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE-TN 306
Query: 399 VETDTEKVLRGVVRVENIDDPVQYIDA----------VLERIK-KVHLVKTYGIDEWE 445
+ + R + +E D + +DA +LERIK K +LV +D E
Sbjct: 307 DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVE 364
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 342 FIGYPNVGKSSIINAL--RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNV 399
IG PN GK+++ NAL N++V V E K +++ I + D PGV + N
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65
Query: 400 E---TDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
E D + + V+ +E D + IDA LER
Sbjct: 66 EGISQDEQIAAQSVIDLE-YDCIINVIDACHLER 98
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 311 SMTHPFGKGSIINLLRQFSKLHTERKQ----ISVGFIGYPNVGKSSIINALRNKKVCKTA 366
S TH G G +++ + + K E K I IG PNVGKSS++NA ++ +
Sbjct: 145 SGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVS 204
Query: 367 PVPGETK 373
V G T+
Sbjct: 205 NVAGTTR 211
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGV 392
V +G PNVGKS+I N + +++ PG T+ Y + L LID G+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 35.8 bits (81), Expect = 0.065, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKK--VCKTAPVPGETKVWQYITLMRRIYLIDCPGVV-- 393
+ V G PNVGK+S+ NAL K V V E K + I LID PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65
Query: 394 -YDMTNVETDTEKVLRG----VVRVENIDDPVQYIDAVLERI---KKVHLVKTYGIDEWE 445
Y + + + +L+G V+ V + +P Q + +LE + KKV L T IDE +
Sbjct: 66 GYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMT-AIDEAK 124
Query: 446 DTEDFLKKLAFKWGKIKKKGEPVITASA 473
T + + + K G PV+ S+
Sbjct: 125 KTGMKIDRYELQ----KHLGIPVVFTSS 148
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV----WQYITLMRRIYLIDCPGV 392
V +G PNVGKS+++N L KV +P G T++ + I +I +D PG+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 68
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV----WQYITLMRRIYLIDCPGV 392
V +G PNVGKS+++N L KV +P G T++ + I +I +D PG+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 337 QISVGFIGYPNVGKSSIINALRNKK--VCKTAPVPGETKVWQYITLMRRIYLIDCPGVV- 393
+ V G PNVGK+S+ NAL K V V E K + I LID PG
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 394 --YDMTNVETDTEKVLRG----VVRVENIDDPVQYIDAVLERI---KKVHLVKTYGIDEW 444
Y + + + +L+G V+ V + +P Q + +LE + KKV L T IDE
Sbjct: 65 LGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMT-AIDEA 123
Query: 445 EDT 447
+ T
Sbjct: 124 KKT 126
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 18/65 (27%)
Query: 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM----------RRIYLID 388
SVGF+G+P+VGKS++++ L + E +++ TL+ +I ++D
Sbjct: 74 SVGFVGFPSVGKSTLLSKLTGTE--------SEAAEYEFTTLVTVPGVIRYKGAKIQMLD 125
Query: 389 CPGVV 393
PG++
Sbjct: 126 LPGII 130
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK 373
V +G PNVGKSS+ N L K+ A VPG T+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTR 37
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 22/126 (17%)
Query: 278 FFILNKVDLVPIWVTQRWVAILSKE---YPTIAFHASMTHPFGKGSIINLLRQFSKLHTE 334
+LNK+DL+ +A ++++ Y I + M + L+ + T
Sbjct: 156 IIVLNKIDLL----DDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDG----LKPLEEALTG 207
Query: 335 RKQISVGFIGYPNVGKSSIINALRN-KKVCKTAPVPGETKVWQYITLMRRIY-------L 386
R I F G VGKSS++NAL +K T V + + Q+ T R+Y +
Sbjct: 208 RISI---FAGQSGVGKSSLLNALLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGGDV 264
Query: 387 IDCPGV 392
ID PGV
Sbjct: 265 IDSPGV 270
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 324 LLRQFSKL-HTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMR 382
L+ F KL + ++V +G VGKSS +N+L ++V + +P E + + + R
Sbjct: 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG--LRPVMVSR 79
Query: 383 -----RIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYID-----AVLERIKK 432
I +ID PG+V + V ++++G + V D + Y+D AV E K+
Sbjct: 80 TMGGFTINIIDTPGLV-EAGYVNHQALELIKGFL-VNRTIDVLLYVDRLDVYAVDELDKQ 137
Query: 433 V--HLVKTYGIDEWEDTEDFLKKLAF 456
V + +T+G + W T L F
Sbjct: 138 VVIAITQTFGKEIWCKTLLVLTHAQF 163
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 324 LLRQFSKL-HTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMR 382
L+ F KL + ++V +G VGKSS +N+L ++V + +P E + + + R
Sbjct: 21 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG--LRPVMVSR 78
Query: 383 -----RIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYID-----AVLERIKK 432
I +ID PG+V + V ++++G + V D + Y+D AV E K+
Sbjct: 79 TMGGFTINIIDTPGLV-EAGYVNHQALELIKGFL-VNRTIDVLLYVDRLDVYAVDELDKQ 136
Query: 433 V--HLVKTYGIDEWEDTEDFLKKLAF 456
V + +T+G + W T L F
Sbjct: 137 VVIAITQTFGKEIWCKTLLVLTHAQF 162
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 17/146 (11%)
Query: 324 LLRQFSKL-HTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMR 382
L+ F KL + ++V +G VGKSS +N+L ++V + +P E + + + R
Sbjct: 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG--LRPVMVSR 79
Query: 383 -----RIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-------LERI 430
I +ID PG+V + V ++++G + V D + Y+D + L++
Sbjct: 80 TMGGFTINIIDTPGLV-EAGYVNHQALELIKGFL-VNRTIDVLLYVDRLDVYRVDELDKQ 137
Query: 431 KKVHLVKTYGIDEWEDTEDFLKKLAF 456
+ + +T+G + W T L F
Sbjct: 138 VVIAITQTFGKEIWCKTLLVLTHAQF 163
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 17/146 (11%)
Query: 324 LLRQFSKL-HTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMR 382
L+ F KL + ++V +G VGKSS +N+L ++V + +P E + + + R
Sbjct: 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG--LRPVMVSR 79
Query: 383 -----RIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-------LERI 430
I +ID PG+V + V ++++G + V D + Y+D + L++
Sbjct: 80 TMGGFTINIIDTPGLV-EAGYVNHQALELIKGFL-VNRTIDVLLYVDRLDVYRVDELDKQ 137
Query: 431 KKVHLVKTYGIDEWEDTEDFLKKLAF 456
+ + +T+G + W T L F
Sbjct: 138 VVIAITQTFGKEIWCKTLLVLTHAQF 163
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK 373
R + V +G PNVGKSS++NA +PG T+
Sbjct: 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTR 260
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 338 ISVGFIGYPNVGKSSIINAL 357
++VG +G PNVGKS++ NAL
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 338 ISVGFIGYPNVGKSSIINAL 357
++VG +G PNVGKS++ NAL
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394
R+ + V G PN GKSS++NAL ++ + G T+ L I++ P +
Sbjct: 5 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR----DVLREHIHIDGMPLHII 60
Query: 395 DMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKL 454
D + +++V R + +E ++ D VL + T +D E +F+ +L
Sbjct: 61 DTAGLREASDEVER--IGIERAWQEIEQADRVLFMVDG---TTTDAVDPAEIWPEFIARL 115
Query: 455 AFK 457
K
Sbjct: 116 PAK 118
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKK--VCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYD 395
+ V G PNVGK+S+ NAL K V V E K + I LID PG Y
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG-TYS 64
Query: 396 MTNVETDTEKVLRGVVRVENIDDPVQYIDAV 426
+ D EK+ R + + D + D+V
Sbjct: 65 LGYSSID-EKIARDYLLKGDADLVILVADSV 94
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK---VWQYITLMRRIYLIDCPGVV 393
+V G+PNVGKS+++ AL K + A P T+ V Q+ R +ID PG++
Sbjct: 169 TVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLL 225
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGET-----KVWQYITLMRRIYLIDCPGVV 393
+V +G PNVGK++I NAL + PG T + +Y + ++D PG +
Sbjct: 5 TVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPG-I 60
Query: 394 YDMTNVETDTEKVLRGVVRVENIDDPVQYIDA 425
Y +T D E + R + N D V +D+
Sbjct: 61 YSLTAHSID-ELIARNFILDGNADVIVDIVDS 91
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 27/126 (21%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKV-------CKT------APVPGE--TKVWQYITLMR 382
+ +G +G PNVGKS+ N L N + C PVP E + QY
Sbjct: 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPAS 82
Query: 383 RI----YLIDCPGVVYDMTNVETDTEKVLRGVVRVENI--------DDPVQYIDAVLERI 430
+I ++D G+V N + L + + I DD + +++ ++ I
Sbjct: 83 KIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPI 142
Query: 431 KKVHLV 436
+ + ++
Sbjct: 143 RDIEII 148
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 281 LNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISV 340
+ K+DL+ T+ + +++Y I + +T + S+ +++ F T
Sbjct: 124 ITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTV------ 177
Query: 341 GFIGYPNVGKSSIINAL 357
F G VGKSS++NA+
Sbjct: 178 -FAGQSGVGKSSLLNAI 193
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 342 FIGYPNVGKSSIINALRN-KKVCKTAPVPGETKVWQYITLMRRIY-------LIDCPGV 392
F G VGKSS++NAL + T V + + Q+ T R+Y +ID PGV
Sbjct: 220 FAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGV 278
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMT 397
+ V G PN GKSS++NAL ++ + G T+ L I++ P + D
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR----DVLREHIHIDGMPLHIIDTA 60
Query: 398 NVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFK 457
+ +++V R + +E ++ D VL + T +D E +F+ +L K
Sbjct: 61 GLREASDEVER--IGIERAWQEIEQADRVLFMVDG---TTTDAVDPAEIWPEFIARLPAK 115
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 344 GYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDT 403
G PN GKSS++NAL ++ + G T+ L I++ P + D + +
Sbjct: 11 GRPNAGKSSLLNALAGREAAIVTDIAGTTR----DVLREHIHIDGXPLHIIDTAGLREAS 66
Query: 404 EKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFK 457
++V R + +E ++ D VL + T +D E +F+ +L K
Sbjct: 67 DEVER--IGIERAWQEIEQADRVLFXVDG---TTTDAVDPAEIWPEFIARLPAK 115
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTA 366
+ +G PNVGKS+++N L +K+ T+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITS 34
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTA 366
+ +G PNVGKS+++N L +K+ T+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITS 37
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 43 HSMNPDRPTEGLKGVAKPRTKATIRRLQMYRCFKAKRDKTGKI-------IHPAPFQGWV 95
SMN + E K + PR + +R ++ KA+ + TG IHP F
Sbjct: 14 ESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTESTGYFFGEGVLEIHPEGF---- 69
Query: 96 PSGTQSRVEPNRKWFDNTRVISQNSLQKFQEEFGKAIKNPYDVIMKP 142
G R+E N ++ IS + ++KF G I VI KP
Sbjct: 70 --GFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISG---VIRKP 111
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW 375
+S G PN GKS+++N L ++ + +PG T+ +
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDY 271
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 340 VGFIGYPNVGKSSIINAL 357
G +G PNVGKS++ NAL
Sbjct: 5 CGIVGLPNVGKSTLFNAL 22
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 24/102 (23%)
Query: 340 VGFIGYPNVGKSSIINAL--RNKKVCKTAPVPGETKVWQYITLMRRIYLI---------D 388
+ IG PN GK+S+ N + N++V W +T+ R+ L+ D
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGN----------WPGVTVERKSGLVKKNKDLEIQD 55
Query: 389 CPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
PG +Y M+ + EKV R + + D + +DA LER
Sbjct: 56 LPG-IYSMSPY-SPAEKVARDYLLSQRADSILNVVDATNLER 95
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 339 SVGFIGYPNVGKSSIINALR--NKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393
S+G +GY N GK+S+ N+L +KV K + R+I L+D G +
Sbjct: 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFI 237
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 24/102 (23%)
Query: 340 VGFIGYPNVGKSSIINAL--RNKKVCKTAPVPGETKVWQYITLMRRIYLI---------D 388
+ IG PN GK+S+ N + N++V W +T+ R+ L+ D
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGN----------WPGVTVERKSGLVKKNKDLEIQD 55
Query: 389 CPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
PG +Y M+ + EKV R + + D + +DA LER
Sbjct: 56 LPG-IYSMSPYSPE-EKVARDYLLSQRADSILNVVDATNLER 95
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 339 SVGFIGYPNVGKSSIINAL 357
S+G +GY N GK+S+ N+L
Sbjct: 181 SIGIVGYTNSGKTSLFNSL 199
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 339 SVGFIGYPNVGKSSIINAL 357
S+G +GY N GK+S+ N+L
Sbjct: 181 SIGIVGYTNSGKTSLFNSL 199
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 114
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 371 ETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
E W I LMR+ YL C D D EK+ + + ++D V+Y
Sbjct: 17 ERSAWGNIPLMRKAYLKKCKEFHPDKGG---DEEKMKKMNTLYKKMEDGVKYAHQPDFGG 73
Query: 430 IKKVHLVKTYGIDEWE 445
+ TYG DEWE
Sbjct: 74 FWDATEIPTYGTDEWE 89
>pdb|2AUW|A Chain A, Crystal Structure Of Putative Dna Binding Protein Ne0471
From Nitrosomonas Europaea Atcc 19718
pdb|2AUW|B Chain B, Crystal Structure Of Putative Dna Binding Protein Ne0471
From Nitrosomonas Europaea Atcc 19718
Length = 170
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 399 VETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFKW 458
+E D +LR + + I DP E +VH+ + G EW DTE F + + W
Sbjct: 32 LEVDVGDILRKIPDLAPILDP--------EAFARVHIAEWEGSVEWFDTE-FGRDNVYAW 82
Query: 459 GKIKKKGEPVITASAKMVLNDW-QRGKLPYYTVPEGFEV 496
K ++ GE + DW R L T E +
Sbjct: 83 AK-EQAGE-----VSHEXFGDWXHRNNLSLTTAAEALGI 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,666,080
Number of Sequences: 62578
Number of extensions: 647480
Number of successful extensions: 1573
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1517
Number of HSP's gapped (non-prelim): 79
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)