Query psy6781
Match_columns 534
No_of_seqs 511 out of 3506
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:14:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2423|consensus 100.0 2E-133 4E-138 1022.1 31.2 458 33-496 7-464 (572)
2 KOG1424|consensus 100.0 1.9E-52 4.1E-57 440.9 21.2 318 171-497 109-481 (562)
3 KOG2484|consensus 100.0 2.2E-51 4.8E-56 422.4 19.1 263 230-494 133-407 (435)
4 PF08153 NGP1NT: NGP1NT (NUC09 100.0 2.2E-49 4.8E-54 353.6 8.0 129 71-201 1-130 (130)
5 TIGR03596 GTPase_YlqF ribosome 100.0 6.5E-44 1.4E-48 362.2 27.3 263 222-491 2-276 (276)
6 PRK09563 rbgA GTPase YlqF; Rev 100.0 1.1E-43 2.4E-48 362.4 27.6 263 222-491 5-279 (287)
7 COG1161 Predicted GTPases [Gen 100.0 1.6E-41 3.5E-46 351.8 24.2 259 228-493 19-298 (322)
8 cd01858 NGP_1 NGP-1. Autoanti 100.0 3.5E-32 7.6E-37 253.0 19.0 157 236-392 1-157 (157)
9 cd04178 Nucleostemin_like Nucl 100.0 2.4E-28 5.1E-33 232.3 16.8 148 245-392 1-172 (172)
10 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 5.2E-27 1.1E-31 214.9 17.1 141 233-395 1-141 (141)
11 KOG2485|consensus 99.9 8.7E-27 1.9E-31 235.1 20.0 262 221-488 26-318 (335)
12 cd01856 YlqF YlqF. Proteins o 99.9 5.2E-26 1.1E-30 214.8 19.3 161 228-393 4-171 (171)
13 cd01849 YlqF_related_GTPase Yl 99.9 9.4E-26 2E-30 209.6 17.4 146 245-392 1-155 (155)
14 PRK12289 GTPase RsgA; Reviewed 99.9 4.6E-26 1E-30 238.7 16.2 203 155-397 16-239 (352)
15 PRK12288 GTPase RsgA; Reviewed 99.9 2.5E-25 5.3E-30 233.0 15.7 210 154-397 46-272 (347)
16 cd01859 MJ1464 MJ1464. This f 99.9 1.6E-24 3.5E-29 200.8 18.1 155 233-392 1-156 (156)
17 COG1160 Predicted GTPases [Gen 99.9 2.1E-24 4.6E-29 227.9 20.1 244 208-461 53-323 (444)
18 cd01854 YjeQ_engC YjeQ/EngC. 99.9 3.9E-24 8.4E-29 218.7 15.8 208 155-396 6-227 (287)
19 PRK00098 GTPase RsgA; Reviewed 99.9 7.3E-24 1.6E-28 217.8 15.5 208 155-396 8-230 (298)
20 TIGR00157 ribosome small subun 99.9 7.9E-24 1.7E-28 211.9 13.8 175 182-397 1-186 (245)
21 cd01855 YqeH YqeH. YqeH is an 99.9 1.9E-23 4.1E-28 200.1 15.0 151 233-392 24-190 (190)
22 COG1162 Predicted GTPases [Gen 99.9 3.8E-22 8.2E-27 202.8 16.1 188 170-397 29-231 (301)
23 PRK13796 GTPase YqeH; Provisio 99.9 1.8E-21 3.8E-26 205.5 16.9 151 236-396 61-224 (365)
24 TIGR03594 GTPase_EngA ribosome 99.9 1.4E-20 3E-25 201.6 20.8 241 207-458 48-313 (429)
25 TIGR03597 GTPase_YqeH ribosome 99.9 6.2E-21 1.4E-25 201.0 17.0 152 235-396 55-218 (360)
26 PRK00093 GTP-binding protein D 99.9 4.3E-20 9.3E-25 198.4 22.0 240 206-457 49-312 (435)
27 PRK01889 GTPase RsgA; Reviewed 99.8 5.4E-21 1.2E-25 201.2 12.4 209 155-396 36-261 (356)
28 PRK03003 GTP-binding protein D 99.8 9.6E-20 2.1E-24 198.3 21.1 177 207-394 87-271 (472)
29 PRK09518 bifunctional cytidyla 99.8 2.7E-19 5.9E-24 203.7 23.2 178 207-395 324-511 (712)
30 COG1159 Era GTPase [General fu 99.6 3.9E-15 8.4E-20 150.8 8.1 118 338-455 7-138 (298)
31 COG1159 Era GTPase [General fu 99.5 1.7E-13 3.7E-18 138.9 14.2 124 201-332 49-174 (298)
32 COG1160 Predicted GTPases [Gen 99.4 7.9E-14 1.7E-18 148.2 6.6 108 338-445 4-126 (444)
33 PF02421 FeoB_N: Ferrous iron 99.4 2.5E-13 5.3E-18 127.5 7.1 102 338-443 1-117 (156)
34 PF03193 DUF258: Protein of un 99.4 1.8E-12 3.8E-17 122.2 9.2 93 293-397 2-102 (161)
35 COG0218 Predicted GTPase [Gene 99.3 3.3E-12 7.1E-17 123.4 10.0 124 336-459 23-165 (200)
36 COG0486 ThdF Predicted GTPase 99.3 1.3E-12 2.9E-17 139.2 7.1 62 335-396 215-279 (454)
37 TIGR00436 era GTP-binding prot 99.2 4.7E-11 1E-15 121.1 11.3 115 339-454 2-129 (270)
38 PRK12298 obgE GTPase CgtA; Rev 99.2 1.9E-10 4.1E-15 122.9 14.1 144 339-483 161-335 (390)
39 TIGR00436 era GTP-binding prot 99.2 3.4E-10 7.3E-15 114.8 14.5 118 205-331 47-165 (270)
40 COG1084 Predicted GTPase [Gene 99.2 1E-10 2.2E-15 120.1 10.5 109 335-444 166-293 (346)
41 PF01926 MMR_HSR1: 50S ribosom 99.1 7.6E-11 1.7E-15 103.7 7.2 58 339-396 1-61 (116)
42 PRK00089 era GTPase Era; Revie 99.1 9.6E-11 2.1E-15 119.7 7.9 122 338-459 6-144 (292)
43 PRK00089 era GTPase Era; Revie 99.1 1.8E-09 3.8E-14 110.4 14.7 120 204-331 51-172 (292)
44 PRK09866 hypothetical protein; 99.0 2.2E-09 4.7E-14 119.1 14.4 115 205-328 229-351 (741)
45 TIGR03598 GTPase_YsxC ribosome 99.0 9E-10 1.9E-14 104.3 10.0 110 336-445 17-143 (179)
46 KOG1423|consensus 99.0 5.2E-10 1.1E-14 113.8 8.8 120 336-455 71-209 (379)
47 KOG1191|consensus 99.0 3.7E-10 8E-15 120.8 8.0 61 335-395 266-329 (531)
48 PRK15494 era GTPase Era; Provi 99.0 5.4E-10 1.2E-14 117.3 8.7 61 336-396 51-114 (339)
49 PRK15494 era GTPase Era; Provi 99.0 3.3E-09 7.1E-14 111.4 13.5 119 204-331 98-217 (339)
50 TIGR03594 GTPase_EngA ribosome 99.0 5E-10 1.1E-14 120.2 6.3 107 339-445 1-121 (429)
51 PRK00454 engB GTP-binding prot 99.0 3.3E-09 7.2E-14 100.8 11.0 60 336-395 23-83 (196)
52 cd01853 Toc34_like Toc34-like 99.0 5.7E-09 1.2E-13 105.2 12.8 62 335-396 29-93 (249)
53 PRK12297 obgE GTPase CgtA; Rev 99.0 2E-09 4.4E-14 116.0 10.0 120 338-459 159-301 (424)
54 cd01894 EngA1 EngA1 subfamily. 99.0 1.4E-08 3E-13 92.0 13.6 111 206-327 45-155 (157)
55 KOG1489|consensus 98.9 1.7E-09 3.8E-14 110.5 8.0 121 338-459 197-340 (366)
56 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 3.9E-09 8.5E-14 101.7 10.1 59 338-396 1-63 (196)
57 PRK12299 obgE GTPase CgtA; Rev 98.9 4.8E-09 1E-13 110.1 11.6 106 338-445 159-285 (335)
58 PTZ00258 GTP-binding protein; 98.9 1E-09 2.2E-14 116.9 6.6 61 336-397 20-100 (390)
59 COG0370 FeoB Fe2+ transport sy 98.9 4.5E-09 9.7E-14 116.8 11.6 120 337-460 3-139 (653)
60 PRK09601 GTP-binding protein Y 98.9 1.3E-09 2.8E-14 115.0 6.6 58 338-396 3-80 (364)
61 PRK04213 GTP-binding protein; 98.9 6.2E-09 1.3E-13 99.9 10.7 56 336-393 8-63 (201)
62 PRK12296 obgE GTPase CgtA; Rev 98.9 4E-09 8.6E-14 115.5 10.2 59 337-396 159-220 (500)
63 COG0536 Obg Predicted GTPase [ 98.9 1.9E-09 4.2E-14 111.3 6.5 120 339-459 161-306 (369)
64 cd01900 YchF YchF subfamily. 98.9 1.3E-09 2.9E-14 111.2 5.0 57 340-397 1-77 (274)
65 cd04163 Era Era subfamily. Er 98.9 5.6E-09 1.2E-13 94.5 8.1 111 337-447 3-127 (168)
66 TIGR03156 GTP_HflX GTP-binding 98.9 1E-08 2.2E-13 108.2 11.0 58 336-394 188-249 (351)
67 TIGR02729 Obg_CgtA Obg family 98.9 1.4E-08 3E-13 106.4 11.4 58 338-396 158-219 (329)
68 PRK09518 bifunctional cytidyla 98.9 6.4E-09 1.4E-13 119.2 9.6 109 337-445 275-397 (712)
69 TIGR00450 mnmE_trmE_thdF tRNA 98.9 6E-09 1.3E-13 113.1 8.9 61 335-395 201-264 (442)
70 COG0486 ThdF Predicted GTPase 98.8 1.6E-08 3.6E-13 108.3 11.5 110 208-330 267-376 (454)
71 PRK03003 GTP-binding protein D 98.8 3.4E-09 7.3E-14 115.9 6.3 108 337-444 38-159 (472)
72 PF00009 GTP_EFTU: Elongation 98.8 2.7E-08 5.8E-13 95.2 11.5 110 205-330 69-187 (188)
73 cd04163 Era Era subfamily. Er 98.8 9.2E-08 2E-12 86.5 13.9 116 205-328 50-167 (168)
74 cd01894 EngA1 EngA1 subfamily. 98.8 4.9E-09 1.1E-13 95.0 5.1 106 341-446 1-120 (157)
75 cd01895 EngA2 EngA2 subfamily. 98.8 2E-08 4.4E-13 91.9 9.0 60 337-396 2-64 (174)
76 cd01895 EngA2 EngA2 subfamily. 98.8 1.3E-07 2.9E-12 86.5 13.9 116 207-327 51-172 (174)
77 cd01898 Obg Obg subfamily. Th 98.8 3.8E-08 8.2E-13 90.9 9.8 114 207-327 49-168 (170)
78 cd01898 Obg Obg subfamily. Th 98.8 4.2E-08 9.1E-13 90.7 9.9 55 339-394 2-60 (170)
79 PRK09554 feoB ferrous iron tra 98.7 2.3E-08 5E-13 115.2 9.1 122 337-460 3-143 (772)
80 PRK05291 trmE tRNA modificatio 98.7 2.2E-08 4.9E-13 108.9 8.6 62 335-396 213-277 (449)
81 PF05049 IIGP: Interferon-indu 98.7 1.9E-08 4.1E-13 106.5 7.4 106 336-442 34-152 (376)
82 TIGR02836 spore_IV_A stage IV 98.7 5.2E-08 1.1E-12 103.7 10.4 153 336-488 16-244 (492)
83 cd01888 eIF2_gamma eIF2-gamma 98.7 1.9E-07 4.1E-12 90.7 13.5 110 206-330 83-199 (203)
84 COG2262 HflX GTPases [General 98.7 9.2E-08 2E-12 101.1 11.3 138 205-358 239-378 (411)
85 COG0012 Predicted GTPase, prob 98.7 8.4E-09 1.8E-13 108.0 3.5 73 337-410 2-95 (372)
86 TIGR00991 3a0901s02IAP34 GTP-b 98.7 4E-08 8.7E-13 101.6 8.4 77 318-396 21-100 (313)
87 cd04164 trmE TrmE (MnmE, ThdF, 98.7 1.8E-07 3.8E-12 84.5 11.6 107 206-328 49-155 (157)
88 PRK11058 GTPase HflX; Provisio 98.7 7.9E-08 1.7E-12 104.0 10.9 56 338-394 198-257 (426)
89 PF10662 PduV-EutP: Ethanolami 98.7 1E-07 2.2E-12 88.3 9.7 102 210-326 40-142 (143)
90 cd04104 p47_IIGP_like p47 (47- 98.7 9.2E-08 2E-12 92.5 9.7 108 338-445 2-121 (197)
91 cd04171 SelB SelB subfamily. 98.6 4.1E-07 8.8E-12 83.1 12.7 106 207-327 52-163 (164)
92 cd01876 YihA_EngB The YihA (En 98.6 1.2E-07 2.7E-12 86.0 9.2 56 340-395 2-58 (170)
93 PRK09602 translation-associate 98.6 3.6E-08 7.7E-13 105.7 6.5 58 338-396 2-86 (396)
94 cd01879 FeoB Ferrous iron tran 98.6 2.3E-07 5.1E-12 84.3 10.6 113 206-328 43-155 (158)
95 PRK00093 GTP-binding protein D 98.6 4.1E-07 8.9E-12 98.1 14.2 121 205-330 220-344 (435)
96 cd04164 trmE TrmE (MnmE, ThdF, 98.6 7.1E-08 1.5E-12 87.1 6.8 60 337-396 1-63 (157)
97 PRK12298 obgE GTPase CgtA; Rev 98.6 3E-07 6.6E-12 98.4 12.1 117 207-330 208-333 (390)
98 TIGR00993 3a0901s04IAP86 chlor 98.6 3E-07 6.4E-12 102.7 12.3 61 336-396 117-180 (763)
99 TIGR02729 Obg_CgtA Obg family 98.6 2.4E-07 5.2E-12 97.1 11.0 117 206-329 205-328 (329)
100 cd04165 GTPBP1_like GTPBP1-lik 98.6 4.6E-07 9.9E-12 89.9 12.4 108 205-328 83-221 (224)
101 cd00881 GTP_translation_factor 98.6 7.5E-07 1.6E-11 83.2 13.0 110 205-330 61-187 (189)
102 PRK12299 obgE GTPase CgtA; Rev 98.6 3.9E-07 8.4E-12 95.7 12.0 120 206-332 206-330 (335)
103 TIGR02528 EutP ethanolamine ut 98.6 3.3E-07 7.2E-12 82.7 9.9 103 209-326 38-141 (142)
104 cd01889 SelB_euk SelB subfamil 98.6 8E-07 1.7E-11 85.0 13.0 110 205-330 67-186 (192)
105 PRK12296 obgE GTPase CgtA; Rev 98.6 6E-07 1.3E-11 98.6 13.5 118 206-331 206-341 (500)
106 cd01884 EF_Tu EF-Tu subfamily. 98.6 5.6E-07 1.2E-11 87.4 11.8 102 201-318 60-171 (195)
107 cd01878 HflX HflX subfamily. 98.6 1E-06 2.2E-11 84.8 13.4 111 207-327 90-202 (204)
108 COG1163 DRG Predicted GTPase [ 98.5 7.1E-08 1.5E-12 99.2 5.1 61 336-397 62-125 (365)
109 cd00880 Era_like Era (E. coli 98.5 1.3E-06 2.8E-11 77.6 12.6 115 205-328 44-162 (163)
110 cd01897 NOG NOG1 is a nucleola 98.5 1.3E-07 2.8E-12 87.3 6.2 55 339-394 2-59 (168)
111 TIGR03156 GTP_HflX GTP-binding 98.5 6.6E-07 1.4E-11 94.6 12.3 111 206-327 237-349 (351)
112 cd01890 LepA LepA subfamily. 98.5 8.6E-07 1.9E-11 82.8 11.7 108 205-329 66-176 (179)
113 KOG1423|consensus 98.5 5.9E-07 1.3E-11 91.8 11.1 127 200-330 114-271 (379)
114 cd01899 Ygr210 Ygr210 subfamil 98.5 1E-07 2.2E-12 99.4 5.5 56 340-396 1-83 (318)
115 KOG1490|consensus 98.5 1.4E-07 3.1E-12 101.4 6.3 64 334-398 165-231 (620)
116 cd01881 Obg_like The Obg-like 98.5 3.4E-07 7.4E-12 84.7 8.2 116 205-327 43-174 (176)
117 cd01881 Obg_like The Obg-like 98.4 1.3E-07 2.9E-12 87.5 4.0 52 342-394 1-56 (176)
118 PF02421 FeoB_N: Ferrous iron 98.4 1.6E-07 3.5E-12 88.3 4.4 111 205-325 46-156 (156)
119 PRK05291 trmE tRNA modificatio 98.4 1.2E-06 2.5E-11 95.6 11.6 107 206-329 263-369 (449)
120 PRK15467 ethanolamine utilizat 98.4 1.3E-06 2.9E-11 81.6 10.4 106 210-330 41-147 (158)
121 cd01887 IF2_eIF5B IF2/eIF5B (i 98.4 3.1E-07 6.6E-12 84.6 6.0 101 339-444 2-115 (168)
122 KOG1491|consensus 98.4 2.3E-07 4.9E-12 96.0 5.4 73 336-409 19-111 (391)
123 cd01879 FeoB Ferrous iron tran 98.4 1.9E-07 4E-12 85.0 4.2 103 342-445 1-115 (158)
124 cd00880 Era_like Era (E. coli 98.4 3.5E-07 7.5E-12 81.3 5.4 104 342-445 1-118 (163)
125 cd01896 DRG The developmentall 98.4 6E-07 1.3E-11 89.5 7.3 57 339-396 2-61 (233)
126 PRK00454 engB GTP-binding prot 98.4 4.7E-06 1E-10 79.1 12.9 121 206-330 70-194 (196)
127 cd01897 NOG NOG1 is a nucleola 98.4 3E-06 6.5E-11 78.2 11.2 84 243-327 79-165 (168)
128 PTZ00327 eukaryotic translatio 98.4 3.3E-06 7.1E-11 92.3 13.2 111 205-331 116-234 (460)
129 TIGR00092 GTP-binding protein 98.4 4.2E-07 9.2E-12 96.2 5.8 62 338-399 3-84 (368)
130 cd04171 SelB SelB subfamily. 98.4 7E-07 1.5E-11 81.5 6.4 56 338-393 1-62 (164)
131 PRK11058 GTPase HflX; Provisio 98.4 3.6E-06 7.8E-11 91.2 12.8 115 207-330 246-362 (426)
132 PF04548 AIG1: AIG1 family; I 98.4 5.9E-07 1.3E-11 88.1 6.2 59 338-396 1-63 (212)
133 TIGR00231 small_GTP small GTP- 98.4 8.5E-07 1.8E-11 78.8 6.6 55 338-393 2-61 (161)
134 cd04166 CysN_ATPS CysN_ATPS su 98.4 2E-07 4.4E-12 90.9 2.7 55 339-393 1-88 (208)
135 cd01886 EF-G Elongation factor 98.3 8E-07 1.7E-11 90.7 7.0 118 339-460 1-146 (270)
136 cd04157 Arl6 Arl6 subfamily. 98.3 3.1E-06 6.7E-11 77.4 10.2 106 207-326 46-160 (162)
137 PRK13768 GTPase; Provisional 98.3 2.3E-06 5E-11 86.4 10.2 119 206-332 97-249 (253)
138 COG3596 Predicted GTPase [Gene 98.3 6.2E-07 1.4E-11 90.7 5.7 106 335-442 37-159 (296)
139 cd01890 LepA LepA subfamily. 98.3 1.4E-06 3.1E-11 81.4 7.8 117 339-459 2-148 (179)
140 cd01878 HflX HflX subfamily. 98.3 1.3E-06 2.8E-11 84.1 7.4 59 335-394 39-101 (204)
141 PRK15467 ethanolamine utilizat 98.3 1.3E-06 2.7E-11 81.7 7.0 49 339-396 3-51 (158)
142 cd01884 EF_Tu EF-Tu subfamily. 98.3 7.6E-07 1.7E-11 86.5 5.4 105 337-445 2-132 (195)
143 PRK04000 translation initiatio 98.3 7.6E-06 1.6E-10 88.3 13.2 111 206-331 85-202 (411)
144 PRK12317 elongation factor 1-a 98.3 1.1E-06 2.4E-11 94.9 6.7 60 334-393 3-95 (425)
145 cd01887 IF2_eIF5B IF2/eIF5B (i 98.3 1.3E-05 2.8E-10 73.7 12.9 108 206-329 50-165 (168)
146 cd01889 SelB_euk SelB subfamil 98.3 4.4E-07 9.6E-12 86.8 3.2 56 338-393 1-79 (192)
147 cd00881 GTP_translation_factor 98.3 2.1E-06 4.5E-11 80.3 7.5 103 339-445 1-128 (189)
148 cd04156 ARLTS1 ARLTS1 subfamil 98.3 4.2E-06 9.1E-11 76.6 9.3 107 207-327 45-159 (160)
149 TIGR03598 GTPase_YsxC ribosome 98.3 6.6E-06 1.4E-10 77.9 10.8 105 207-318 65-178 (179)
150 cd01861 Rab6 Rab6 subfamily. 98.3 5.5E-06 1.2E-10 75.8 9.9 105 207-327 50-159 (161)
151 PRK12297 obgE GTPase CgtA; Rev 98.3 5.6E-06 1.2E-10 89.6 11.3 115 205-330 205-327 (424)
152 cd00154 Rab Rab family. Rab G 98.2 2E-06 4.3E-11 77.2 6.5 56 338-393 1-60 (159)
153 PRK04213 GTP-binding protein; 98.2 1.8E-05 4E-10 75.8 13.6 119 207-330 53-192 (201)
154 cd04160 Arfrp1 Arfrp1 subfamil 98.2 5.7E-06 1.2E-10 76.2 9.7 108 205-326 49-165 (167)
155 cd01876 YihA_EngB The YihA (En 98.2 2.1E-05 4.6E-10 71.3 13.0 119 207-328 46-169 (170)
156 cd04155 Arl3 Arl3 subfamily. 98.2 2.4E-06 5.2E-11 79.4 6.7 68 322-393 2-69 (173)
157 PF00350 Dynamin_N: Dynamin fa 98.2 2E-06 4.4E-11 79.8 6.2 31 340-370 1-31 (168)
158 TIGR00437 feoB ferrous iron tr 98.2 3.9E-06 8.4E-11 94.5 9.5 112 344-459 1-129 (591)
159 TIGR03680 eif2g_arch translati 98.2 1.7E-05 3.8E-10 85.3 14.1 109 207-330 81-196 (406)
160 cd01893 Miro1 Miro1 subfamily. 98.2 6.8E-06 1.5E-10 76.4 9.6 108 207-328 48-162 (166)
161 CHL00071 tufA elongation facto 98.2 1.4E-05 3.1E-10 86.0 13.2 115 200-330 69-211 (409)
162 cd04151 Arl1 Arl1 subfamily. 98.2 9.1E-06 2E-10 74.7 10.1 106 207-326 44-156 (158)
163 cd01891 TypA_BipA TypA (tyrosi 98.2 1.1E-05 2.4E-10 77.2 10.9 98 205-318 64-170 (194)
164 COG2262 HflX GTPases [General 98.2 4.5E-06 9.8E-11 88.5 8.8 116 335-456 190-328 (411)
165 CHL00071 tufA elongation facto 98.2 9E-07 2E-11 95.3 3.6 107 335-445 10-142 (409)
166 PRK10512 selenocysteinyl-tRNA- 98.2 9.9E-06 2.2E-10 91.6 12.1 108 207-330 52-166 (614)
167 cd01850 CDC_Septin CDC/Septin. 98.2 6.5E-06 1.4E-10 84.3 9.7 59 337-395 4-76 (276)
168 smart00178 SAR Sar1p-like memb 98.2 9.3E-06 2E-10 77.3 10.0 108 206-327 61-182 (184)
169 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.2 8E-06 1.7E-10 76.8 9.4 57 336-393 14-70 (174)
170 PLN03127 Elongation factor Tu; 98.2 1.2E-05 2.7E-10 87.6 11.8 116 199-330 117-252 (447)
171 cd04139 RalA_RalB RalA/RalB su 98.2 8.3E-06 1.8E-10 74.4 8.7 102 338-445 1-119 (164)
172 smart00177 ARF ARF-like small 98.2 1.3E-05 2.9E-10 75.5 10.3 110 205-328 56-172 (175)
173 cd04145 M_R_Ras_like M-Ras/R-R 98.1 1.4E-05 3E-10 73.2 10.1 55 337-393 2-61 (164)
174 cd01851 GBP Guanylate-binding 98.1 4.3E-06 9.3E-11 83.0 7.1 61 336-396 6-74 (224)
175 TIGR00475 selB selenocysteine- 98.1 1.8E-05 3.9E-10 89.0 12.9 109 206-330 50-166 (581)
176 PRK12736 elongation factor Tu; 98.1 2.4E-05 5.3E-10 83.9 13.3 115 200-330 69-201 (394)
177 cd04168 TetM_like Tet(M)-like 98.1 3.5E-06 7.7E-11 84.3 6.4 118 339-460 1-146 (237)
178 cd01891 TypA_BipA TypA (tyrosi 98.1 6.8E-06 1.5E-10 78.7 8.1 103 338-444 3-130 (194)
179 cd01864 Rab19 Rab19 subfamily. 98.1 2.5E-05 5.5E-10 72.1 11.6 107 207-327 53-163 (165)
180 cd04154 Arl2 Arl2 subfamily. 98.1 1.5E-05 3.3E-10 74.5 10.2 106 207-326 59-171 (173)
181 PRK09866 hypothetical protein; 98.1 7.2E-06 1.6E-10 91.6 9.2 30 336-365 68-97 (741)
182 smart00178 SAR Sar1p-like memb 98.1 7.7E-06 1.7E-10 77.9 8.3 57 336-393 16-72 (184)
183 COG4917 EutP Ethanolamine util 98.1 1.7E-05 3.8E-10 71.7 9.8 93 230-327 51-143 (148)
184 cd04124 RabL2 RabL2 subfamily. 98.1 2E-05 4.3E-10 73.0 10.8 87 239-329 68-157 (161)
185 cd04154 Arl2 Arl2 subfamily. 98.1 3.9E-06 8.5E-11 78.5 6.1 57 336-393 13-69 (173)
186 cd01861 Rab6 Rab6 subfamily. 98.1 4.2E-06 9E-11 76.6 6.1 54 339-393 2-60 (161)
187 cd00878 Arf_Arl Arf (ADP-ribos 98.1 1.6E-05 3.6E-10 72.6 10.1 106 207-326 44-156 (158)
188 PTZ00099 rab6; Provisional 98.1 1.5E-05 3.3E-10 76.0 10.1 108 206-331 29-143 (176)
189 cd00154 Rab Rab family. Rab G 98.1 1.9E-05 4E-10 70.8 10.2 88 237-326 66-158 (159)
190 cd04150 Arf1_5_like Arf1-Arf5- 98.1 1.7E-05 3.8E-10 73.5 10.2 107 206-326 44-157 (159)
191 smart00175 RAB Rab subfamily o 98.1 2E-05 4.4E-10 72.0 10.5 91 237-329 66-161 (164)
192 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 2.2E-05 4.7E-10 74.7 11.0 109 207-329 53-169 (183)
193 cd04101 RabL4 RabL4 (Rab-like4 98.1 2E-05 4.3E-10 72.4 10.4 106 206-327 52-161 (164)
194 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.1 1.8E-05 3.9E-10 74.4 10.2 108 205-326 58-172 (174)
195 cd01863 Rab18 Rab18 subfamily. 98.1 5.8E-06 1.3E-10 75.7 6.7 56 338-393 1-60 (161)
196 PRK00049 elongation factor Tu; 98.1 2.1E-05 4.6E-10 84.4 11.9 115 200-330 69-203 (396)
197 cd04149 Arf6 Arf6 subfamily. 98.1 1.8E-05 3.8E-10 74.3 9.9 107 206-326 53-166 (168)
198 cd04158 ARD1 ARD1 subfamily. 98.1 1.7E-05 3.6E-10 74.2 9.7 112 205-330 42-161 (169)
199 cd01862 Rab7 Rab7 subfamily. 98.1 2.6E-05 5.7E-10 71.9 10.8 90 239-328 68-165 (172)
200 PRK05506 bifunctional sulfate 98.1 1.5E-06 3.3E-11 98.5 2.9 30 332-361 19-48 (632)
201 cd04142 RRP22 RRP22 subfamily. 98.1 2.8E-05 6.2E-10 75.4 11.3 114 208-327 51-171 (198)
202 cd01860 Rab5_related Rab5-rela 98.1 7.3E-06 1.6E-10 75.1 6.8 55 338-392 2-60 (163)
203 cd04166 CysN_ATPS CysN_ATPS su 98.1 2.8E-05 6.1E-10 75.8 11.2 102 204-320 75-184 (208)
204 PLN03118 Rab family protein; P 98.1 7E-06 1.5E-10 79.8 6.7 144 336-483 13-179 (211)
205 PRK12735 elongation factor Tu; 98.1 4.4E-05 9.5E-10 82.0 13.3 114 201-330 70-203 (396)
206 cd01866 Rab2 Rab2 subfamily. 98.1 3.1E-05 6.7E-10 72.1 10.7 106 207-328 54-164 (168)
207 cd04145 M_R_Ras_like M-Ras/R-R 98.1 2E-05 4.4E-10 72.1 9.2 104 208-327 52-161 (164)
208 TIGR00484 EF-G translation elo 98.1 7E-06 1.5E-10 94.0 7.5 120 337-460 10-157 (689)
209 cd04112 Rab26 Rab26 subfamily. 98.1 2.7E-05 5.8E-10 74.4 10.4 91 238-330 68-163 (191)
210 cd01882 BMS1 Bms1. Bms1 is an 98.1 4.9E-06 1.1E-10 82.5 5.4 109 336-446 38-148 (225)
211 cd04106 Rab23_lke Rab23-like s 98.1 2.4E-05 5.3E-10 71.5 9.7 87 239-327 70-160 (162)
212 TIGR00450 mnmE_trmE_thdF tRNA 98.1 2.9E-05 6.4E-10 84.6 11.9 107 207-328 252-358 (442)
213 cd01862 Rab7 Rab7 subfamily. 98.1 2.4E-05 5.3E-10 72.1 9.7 56 338-393 1-60 (172)
214 PRK12735 elongation factor Tu; 98.1 4.9E-06 1.1E-10 89.3 5.7 60 334-393 9-86 (396)
215 cd04170 EF-G_bact Elongation f 98.0 4.8E-06 1E-10 84.3 5.3 118 339-460 1-146 (268)
216 cd04151 Arl1 Arl1 subfamily. 98.0 1.9E-05 4.1E-10 72.6 8.6 54 339-393 1-54 (158)
217 PLN03127 Elongation factor Tu; 98.0 7.7E-06 1.7E-10 89.2 6.9 113 333-445 57-191 (447)
218 TIGR01393 lepA GTP-binding pro 98.0 5E-05 1.1E-09 85.7 13.5 110 206-332 70-182 (595)
219 cd04156 ARLTS1 ARLTS1 subfamil 98.0 6.9E-06 1.5E-10 75.2 5.5 53 339-393 1-55 (160)
220 PRK00049 elongation factor Tu; 98.0 7.5E-06 1.6E-10 87.9 6.5 111 335-445 10-142 (396)
221 cd04160 Arfrp1 Arfrp1 subfamil 98.0 1.3E-05 2.8E-10 73.8 7.3 55 339-393 1-61 (167)
222 PRK05124 cysN sulfate adenylyl 98.0 4.6E-05 9.9E-10 83.8 12.6 103 203-320 104-215 (474)
223 cd04109 Rab28 Rab28 subfamily. 98.0 2.8E-05 6.1E-10 75.9 9.8 88 240-329 70-165 (215)
224 cd04138 H_N_K_Ras_like H-Ras/N 98.0 2.9E-05 6.3E-10 70.5 9.2 88 240-327 69-159 (162)
225 PRK12739 elongation factor G; 98.0 6.1E-06 1.3E-10 94.6 5.8 120 337-460 8-155 (691)
226 cd04119 RJL RJL (RabJ-Like) su 98.0 1.2E-05 2.5E-10 73.6 6.5 55 338-393 1-60 (168)
227 cd04159 Arl10_like Arl10-like 98.0 4.2E-05 9.1E-10 68.6 10.1 107 207-327 45-158 (159)
228 cd01868 Rab11_like Rab11-like. 98.0 1.3E-05 2.8E-10 73.8 6.8 56 337-393 3-63 (165)
229 cd01866 Rab2 Rab2 subfamily. 98.0 1.4E-05 3E-10 74.4 6.9 57 337-393 4-64 (168)
230 cd01860 Rab5_related Rab5-rela 98.0 5.3E-05 1.2E-09 69.4 10.6 89 239-328 69-161 (163)
231 PRK00007 elongation factor G; 98.0 9.1E-06 2E-10 93.2 6.7 120 337-460 10-157 (693)
232 cd04157 Arl6 Arl6 subfamily. 98.0 1E-05 2.2E-10 73.9 5.8 54 339-393 1-56 (162)
233 cd00878 Arf_Arl Arf (ADP-ribos 98.0 9.4E-06 2E-10 74.2 5.5 55 339-394 1-55 (158)
234 cd04114 Rab30 Rab30 subfamily. 98.0 5.4E-05 1.2E-09 69.9 10.6 88 238-327 74-166 (169)
235 PRK05433 GTP-binding protein L 98.0 8E-05 1.7E-09 84.1 13.9 110 206-332 74-186 (600)
236 cd00879 Sar1 Sar1 subfamily. 98.0 4E-05 8.6E-10 72.6 9.7 90 239-328 82-189 (190)
237 cd04128 Spg1 Spg1p. Spg1p (se 98.0 3.5E-05 7.5E-10 73.6 9.4 88 240-329 69-165 (182)
238 cd01863 Rab18 Rab18 subfamily. 98.0 4.9E-05 1.1E-09 69.6 10.0 105 207-327 50-159 (161)
239 cd04124 RabL2 RabL2 subfamily. 98.0 4.2E-05 9.2E-10 70.8 9.6 56 338-393 1-60 (161)
240 PTZ00133 ADP-ribosylation fact 98.0 5.4E-05 1.2E-09 72.1 10.6 111 205-329 60-177 (182)
241 cd01883 EF1_alpha Eukaryotic e 98.0 4.6E-05 9.9E-10 75.0 10.3 100 205-319 76-194 (219)
242 cd04122 Rab14 Rab14 subfamily. 98.0 5.7E-05 1.2E-09 70.0 10.4 87 238-326 69-160 (166)
243 PF00009 GTP_EFTU: Elongation 98.0 6.3E-06 1.4E-10 78.8 4.1 105 336-444 2-135 (188)
244 cd04127 Rab27A Rab27a subfamil 98.0 4.7E-05 1E-09 71.2 9.9 89 238-328 81-175 (180)
245 PRK12317 elongation factor 1-a 98.0 4.4E-05 9.5E-10 82.5 11.0 109 204-328 82-215 (425)
246 TIGR00485 EF-Tu translation el 98.0 7.7E-05 1.7E-09 80.0 12.6 113 201-329 70-200 (394)
247 TIGR02034 CysN sulfate adenyly 97.9 8.5E-05 1.8E-09 80.1 13.0 110 204-328 78-207 (406)
248 smart00175 RAB Rab subfamily o 97.9 1.6E-05 3.4E-10 72.7 6.3 55 338-393 1-60 (164)
249 cd04119 RJL RJL (RabJ-Like) su 97.9 6.5E-05 1.4E-09 68.6 10.4 82 240-327 69-164 (168)
250 cd04169 RF3 RF3 subfamily. Pe 97.9 1.7E-05 3.7E-10 80.8 7.0 119 338-460 3-153 (267)
251 cd04132 Rho4_like Rho4-like su 97.9 5.6E-05 1.2E-09 71.4 10.0 89 240-329 69-166 (187)
252 TIGR00231 small_GTP small GTP- 97.9 1.8E-05 3.8E-10 70.3 6.1 110 207-326 51-160 (161)
253 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.9 2.5E-05 5.5E-10 74.2 7.5 57 337-393 3-63 (183)
254 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.9 5.8E-05 1.3E-09 69.7 9.7 88 239-328 70-162 (166)
255 cd01865 Rab3 Rab3 subfamily. 97.9 9E-05 2E-09 68.7 11.0 88 239-328 69-161 (165)
256 TIGR00487 IF-2 translation ini 97.9 1.7E-05 3.6E-10 89.3 7.1 113 336-453 86-210 (587)
257 cd01867 Rab8_Rab10_Rab13_like 97.9 2.2E-05 4.8E-10 72.9 6.8 57 337-393 3-63 (167)
258 TIGR00475 selB selenocysteine- 97.9 1.6E-05 3.4E-10 89.5 6.7 106 338-445 1-117 (581)
259 cd00882 Ras_like_GTPase Ras-li 97.9 9E-05 1.9E-09 64.6 10.1 107 206-326 45-156 (157)
260 cd01886 EF-G Elongation factor 97.9 8.6E-05 1.9E-09 75.8 11.4 68 205-288 63-130 (270)
261 cd04113 Rab4 Rab4 subfamily. 97.9 2.1E-05 4.5E-10 72.2 6.3 56 338-393 1-60 (161)
262 smart00174 RHO Rho (Ras homolo 97.9 3.8E-05 8.2E-10 71.4 8.1 88 240-327 66-169 (174)
263 cd04110 Rab35 Rab35 subfamily. 97.9 7.2E-05 1.6E-09 72.1 10.3 88 239-328 74-165 (199)
264 PRK05506 bifunctional sulfate 97.9 0.0001 2.2E-09 83.9 13.1 112 203-329 101-232 (632)
265 PLN00223 ADP-ribosylation fact 97.9 8.1E-05 1.8E-09 70.9 10.5 108 207-328 62-176 (181)
266 cd04149 Arf6 Arf6 subfamily. 97.9 2.2E-05 4.7E-10 73.7 6.4 56 336-393 8-64 (168)
267 cd04139 RalA_RalB RalA/RalB su 97.9 8.9E-05 1.9E-09 67.6 10.3 89 239-328 67-160 (164)
268 cd04136 Rap_like Rap-like subf 97.9 7.1E-05 1.5E-09 68.4 9.6 88 240-327 69-160 (163)
269 cd04140 ARHI_like ARHI subfami 97.9 4.6E-05 9.9E-10 70.6 8.4 107 208-328 51-163 (165)
270 cd04144 Ras2 Ras2 subfamily. 97.9 0.0001 2.3E-09 70.3 11.1 88 240-329 67-162 (190)
271 cd01864 Rab19 Rab19 subfamily. 97.9 2.7E-05 5.9E-10 71.9 6.8 56 337-392 3-62 (165)
272 cd01867 Rab8_Rab10_Rab13_like 97.9 0.00012 2.5E-09 68.1 11.0 88 238-327 70-162 (167)
273 cd04118 Rab24 Rab24 subfamily. 97.9 2.3E-05 5E-10 74.6 6.3 56 338-393 1-61 (193)
274 cd04107 Rab32_Rab38 Rab38/Rab3 97.9 7.9E-05 1.7E-09 71.8 10.0 89 239-329 69-167 (201)
275 cd04138 H_N_K_Ras_like H-Ras/N 97.9 2.6E-05 5.6E-10 70.9 6.2 54 338-393 2-60 (162)
276 TIGR01394 TypA_BipA GTP-bindin 97.9 0.00021 4.5E-09 80.7 14.7 112 205-332 63-193 (594)
277 PRK12736 elongation factor Tu; 97.9 1.1E-05 2.4E-10 86.5 4.3 60 334-393 9-86 (394)
278 cd04118 Rab24 Rab24 subfamily. 97.9 7.9E-05 1.7E-09 70.9 9.7 90 240-329 70-165 (193)
279 TIGR00437 feoB ferrous iron tr 97.9 7E-05 1.5E-09 84.5 10.7 112 207-328 42-153 (591)
280 cd04159 Arl10_like Arl10-like 97.9 3E-05 6.5E-10 69.6 6.3 53 340-393 2-55 (159)
281 smart00173 RAS Ras subfamily o 97.9 2.7E-05 5.8E-10 71.5 6.1 54 339-394 2-60 (164)
282 cd00879 Sar1 Sar1 subfamily. 97.8 2.9E-05 6.3E-10 73.5 6.5 56 336-393 18-74 (190)
283 KOG2486|consensus 97.8 3.1E-05 6.7E-10 78.6 6.8 61 336-396 135-197 (320)
284 cd04108 Rab36_Rab34 Rab34/Rab3 97.8 0.00012 2.6E-09 68.8 10.5 89 239-329 68-164 (170)
285 smart00173 RAS Ras subfamily o 97.8 8.3E-05 1.8E-09 68.3 9.1 87 240-328 68-160 (164)
286 cd04123 Rab21 Rab21 subfamily. 97.8 0.00014 3E-09 66.0 10.5 86 240-327 69-159 (162)
287 cd04161 Arl2l1_Arl13_like Arl2 97.8 2.7E-05 5.8E-10 72.9 5.8 54 339-393 1-54 (167)
288 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.8 3.3E-05 7.2E-10 71.3 6.3 55 338-393 3-62 (166)
289 cd01865 Rab3 Rab3 subfamily. 97.8 3.9E-05 8.5E-10 71.1 6.8 55 338-393 2-61 (165)
290 PTZ00133 ADP-ribosylation fact 97.8 4.9E-05 1.1E-09 72.4 7.6 57 335-393 15-72 (182)
291 cd00877 Ran Ran (Ras-related n 97.8 9E-05 2E-09 69.2 9.2 86 241-329 70-158 (166)
292 TIGR00483 EF-1_alpha translati 97.8 0.00014 3E-09 78.8 11.8 103 204-320 83-197 (426)
293 cd01871 Rac1_like Rac1-like su 97.8 8.3E-05 1.8E-09 70.3 8.9 88 240-327 69-172 (174)
294 cd04137 RheB Rheb (Ras Homolog 97.8 2.6E-05 5.6E-10 73.1 5.4 54 338-393 2-60 (180)
295 cd01868 Rab11_like Rab11-like. 97.8 0.00015 3.2E-09 66.8 10.4 87 239-327 71-162 (165)
296 cd04140 ARHI_like ARHI subfami 97.8 4E-05 8.7E-10 71.0 6.6 54 338-393 2-60 (165)
297 cd04113 Rab4 Rab4 subfamily. 97.8 0.00014 3.1E-09 66.6 10.1 87 239-327 68-159 (161)
298 cd04176 Rap2 Rap2 subgroup. T 97.8 6.1E-05 1.3E-09 69.2 7.6 86 240-327 69-160 (163)
299 COG0218 Predicted GTPase [Gene 97.8 0.00041 8.8E-09 67.7 13.4 118 206-330 70-197 (200)
300 cd00876 Ras Ras family. The R 97.8 0.00018 3.8E-09 65.2 10.4 89 239-327 66-158 (160)
301 cd04106 Rab23_lke Rab23-like s 97.8 3.6E-05 7.7E-10 70.4 5.8 54 338-392 1-61 (162)
302 TIGR02528 EutP ethanolamine ut 97.8 2.3E-05 5E-10 70.6 4.5 45 339-393 2-46 (142)
303 cd04177 RSR1 RSR1 subgroup. R 97.8 4.1E-05 8.8E-10 71.2 6.2 55 338-394 2-61 (168)
304 KOG1547|consensus 97.8 3.4E-05 7.4E-10 76.8 5.9 80 314-395 25-117 (336)
305 cd04146 RERG_RasL11_like RERG/ 97.8 9.7E-05 2.1E-09 68.2 8.6 54 339-394 1-59 (165)
306 cd01874 Cdc42 Cdc42 subfamily. 97.8 8.1E-05 1.8E-09 70.4 8.2 88 240-327 69-172 (175)
307 cd04105 SR_beta Signal recogni 97.8 2.6E-05 5.6E-10 76.0 4.9 53 339-393 2-59 (203)
308 KOG1191|consensus 97.8 7.9E-05 1.7E-09 80.6 8.9 114 208-327 318-447 (531)
309 cd00157 Rho Rho (Ras homology) 97.8 4.6E-05 1E-09 70.2 6.4 56 338-394 1-60 (171)
310 CHL00189 infB translation init 97.8 0.00027 5.9E-09 81.3 13.8 108 206-329 295-409 (742)
311 cd01893 Miro1 Miro1 subfamily. 97.8 2.9E-05 6.2E-10 72.2 4.9 54 338-393 1-58 (166)
312 PRK05124 cysN sulfate adenylyl 97.8 2.3E-05 4.9E-10 86.2 4.9 27 334-360 24-50 (474)
313 cd04112 Rab26 Rab26 subfamily. 97.8 4.8E-05 1.1E-09 72.7 6.5 142 338-484 1-166 (191)
314 PRK09554 feoB ferrous iron tra 97.8 0.00013 2.8E-09 84.6 11.1 119 205-329 49-167 (772)
315 cd04147 Ras_dva Ras-dva subfam 97.8 0.00014 3.1E-09 70.0 9.8 88 240-329 67-162 (198)
316 PLN03126 Elongation factor Tu; 97.8 1.9E-05 4.1E-10 86.8 4.1 108 334-445 78-211 (478)
317 PLN03126 Elongation factor Tu; 97.8 0.00028 6.1E-09 77.7 13.1 74 201-290 139-213 (478)
318 cd00877 Ran Ran (Ras-related n 97.8 2.8E-05 6E-10 72.7 4.6 57 338-394 1-61 (166)
319 cd04175 Rap1 Rap1 subgroup. T 97.8 0.00013 2.9E-09 67.1 9.1 88 240-327 69-160 (164)
320 PRK05306 infB translation init 97.8 7.1E-05 1.5E-09 86.6 8.7 115 336-455 289-414 (787)
321 cd04136 Rap_like Rap-like subf 97.8 5.4E-05 1.2E-09 69.2 6.3 54 338-393 2-60 (163)
322 PLN03118 Rab family protein; P 97.7 0.00019 4.2E-09 69.7 10.5 107 207-329 63-176 (211)
323 cd00876 Ras Ras family. The R 97.7 3.5E-05 7.6E-10 69.8 4.9 54 339-394 1-59 (160)
324 cd04161 Arl2l1_Arl13_like Arl2 97.7 0.00017 3.6E-09 67.5 9.6 106 207-326 44-165 (167)
325 TIGR00485 EF-Tu translation el 97.7 5.1E-05 1.1E-09 81.4 6.8 59 335-393 10-86 (394)
326 cd04125 RabA_like RabA-like su 97.7 5.6E-05 1.2E-09 71.8 6.4 56 338-393 1-60 (188)
327 PRK10512 selenocysteinyl-tRNA- 97.7 3.7E-05 8E-10 87.0 5.9 106 339-445 2-118 (614)
328 cd04130 Wrch_1 Wrch-1 subfamil 97.7 9.1E-05 2E-09 69.3 7.6 86 240-325 68-169 (173)
329 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.7 0.00015 3.3E-09 68.2 9.1 106 208-327 52-161 (172)
330 cd04121 Rab40 Rab40 subfamily. 97.7 0.00023 4.9E-09 68.7 10.5 84 240-329 75-166 (189)
331 cd04122 Rab14 Rab14 subfamily. 97.7 7.5E-05 1.6E-09 69.2 6.9 54 338-393 3-62 (166)
332 TIGR00491 aIF-2 translation in 97.7 0.00034 7.4E-09 78.8 13.3 106 207-328 70-214 (590)
333 cd04142 RRP22 RRP22 subfamily. 97.7 5.4E-05 1.2E-09 73.4 6.0 55 338-393 1-60 (198)
334 cd04125 RabA_like RabA-like su 97.7 0.00027 5.8E-09 67.1 10.7 91 238-330 67-162 (188)
335 cd00157 Rho Rho (Ras homology) 97.7 8.7E-05 1.9E-09 68.4 7.1 87 240-326 68-169 (171)
336 CHL00189 infB translation init 97.7 3.1E-05 6.7E-10 88.9 4.7 114 336-454 243-371 (742)
337 cd04116 Rab9 Rab9 subfamily. 97.7 7.8E-05 1.7E-09 69.1 6.7 57 336-393 4-65 (170)
338 cd04155 Arl3 Arl3 subfamily. 97.7 0.00023 5E-09 66.0 9.8 88 239-326 77-171 (173)
339 cd04110 Rab35 Rab35 subfamily. 97.7 7.7E-05 1.7E-09 71.9 6.8 144 336-484 5-170 (199)
340 cd04123 Rab21 Rab21 subfamily. 97.7 3.8E-05 8.2E-10 69.8 4.4 55 338-393 1-60 (162)
341 TIGR00503 prfC peptide chain r 97.7 7.4E-05 1.6E-09 83.2 7.4 121 336-460 10-162 (527)
342 PRK14845 translation initiatio 97.7 0.00025 5.5E-09 84.1 12.1 107 208-330 528-673 (1049)
343 smart00053 DYNc Dynamin, GTPas 97.7 0.00023 5E-09 71.6 10.2 26 336-361 25-50 (240)
344 cd01896 DRG The developmentall 97.7 0.0003 6.4E-09 70.2 10.9 50 274-329 176-225 (233)
345 cd01885 EF2 EF2 (for archaea a 97.7 9.4E-05 2E-09 73.5 7.3 22 339-360 2-23 (222)
346 PLN03110 Rab GTPase; Provision 97.7 0.00028 6.1E-09 69.2 10.6 90 238-329 79-173 (216)
347 cd04135 Tc10 TC10 subfamily. 97.7 8.1E-05 1.8E-09 69.1 6.4 55 338-394 1-60 (174)
348 cd04111 Rab39 Rab39 subfamily. 97.7 0.00027 5.9E-09 69.1 10.3 91 239-331 71-167 (211)
349 cd04168 TetM_like Tet(M)-like 97.7 0.00056 1.2E-08 68.5 12.7 69 204-288 62-130 (237)
350 cd04146 RERG_RasL11_like RERG/ 97.7 0.00026 5.7E-09 65.3 9.6 108 208-328 49-162 (165)
351 cd04143 Rhes_like Rhes_like su 97.7 0.00046 1E-08 69.5 12.0 92 240-331 68-172 (247)
352 KOG0462|consensus 97.7 0.00022 4.7E-09 78.1 10.2 106 210-331 129-236 (650)
353 PRK05306 infB translation init 97.7 0.00021 4.6E-09 82.7 10.8 107 205-327 336-449 (787)
354 cd04148 RGK RGK subfamily. Th 97.7 0.00033 7.1E-09 69.1 10.7 90 243-332 72-165 (221)
355 KOG1486|consensus 97.7 3.6E-05 7.8E-10 77.1 3.8 62 336-398 61-125 (364)
356 cd01892 Miro2 Miro2 subfamily. 97.7 0.00011 2.3E-09 69.0 6.9 87 240-328 74-164 (169)
357 cd04150 Arf1_5_like Arf1-Arf5- 97.7 8.7E-05 1.9E-09 68.8 6.2 54 338-393 1-55 (159)
358 cd04101 RabL4 RabL4 (Rab-like4 97.7 9.1E-05 2E-09 68.0 6.3 56 338-393 1-63 (164)
359 cd04158 ARD1 ARD1 subfamily. 97.6 7.4E-05 1.6E-09 69.8 5.7 51 339-393 1-54 (169)
360 cd04167 Snu114p Snu114p subfam 97.6 2.9E-05 6.3E-10 75.8 3.1 22 339-360 2-23 (213)
361 cd01870 RhoA_like RhoA-like su 97.6 0.00023 5E-09 66.1 9.0 88 240-327 69-172 (175)
362 PTZ00369 Ras-like protein; Pro 97.6 0.00031 6.6E-09 67.0 10.0 58 336-394 4-65 (189)
363 cd04162 Arl9_Arfrp2_like Arl9/ 97.6 0.00013 2.8E-09 68.1 7.2 105 206-325 44-161 (164)
364 cd04116 Rab9 Rab9 subfamily. 97.6 0.00048 1E-08 63.8 11.0 87 240-326 74-167 (170)
365 cd04167 Snu114p Snu114p subfam 97.6 0.00017 3.7E-09 70.4 8.3 66 206-287 71-136 (213)
366 TIGR00487 IF-2 translation ini 97.6 0.00028 6.2E-09 79.5 11.1 105 207-327 136-247 (587)
367 cd04115 Rab33B_Rab33A Rab33B/R 97.6 0.00011 2.4E-09 68.5 6.7 57 337-393 2-62 (170)
368 cd04144 Ras2 Ras2 subfamily. 97.6 7.3E-05 1.6E-09 71.4 5.5 53 339-393 1-58 (190)
369 PRK10218 GTP-binding protein; 97.6 0.0007 1.5E-08 76.6 14.2 112 205-332 67-197 (607)
370 PF00735 Septin: Septin; Inte 97.6 7.9E-05 1.7E-09 76.6 6.1 59 337-395 4-76 (281)
371 cd04175 Rap1 Rap1 subgroup. T 97.6 0.0001 2.2E-09 67.9 6.2 54 338-393 2-60 (164)
372 cd01875 RhoG RhoG subfamily. 97.6 0.00032 6.8E-09 67.3 9.7 89 240-328 71-175 (191)
373 cd04176 Rap2 Rap2 subgroup. T 97.6 0.00012 2.5E-09 67.3 6.4 54 338-393 2-60 (163)
374 TIGR00491 aIF-2 translation in 97.6 3.7E-05 8E-10 86.5 3.7 102 337-444 4-134 (590)
375 smart00176 RAN Ran (Ras-relate 97.6 0.00034 7.4E-09 68.2 10.0 86 240-328 64-152 (200)
376 cd04126 Rab20 Rab20 subfamily. 97.6 0.00028 6.2E-09 69.9 9.5 87 240-328 64-188 (220)
377 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.6 0.00038 8.2E-09 69.6 10.5 88 240-327 81-185 (232)
378 cd04120 Rab12 Rab12 subfamily. 97.6 0.00043 9.4E-09 67.6 10.6 88 239-328 68-161 (202)
379 COG0532 InfB Translation initi 97.6 0.00055 1.2E-08 75.0 12.3 107 206-328 55-168 (509)
380 PTZ00369 Ras-like protein; Pro 97.6 0.00017 3.7E-09 68.8 7.6 87 240-328 73-165 (189)
381 PRK00741 prfC peptide chain re 97.6 0.00026 5.6E-09 78.8 9.9 121 336-460 9-161 (526)
382 PLN03110 Rab GTPase; Provision 97.6 0.00013 2.8E-09 71.6 6.7 143 336-482 11-175 (216)
383 cd01873 RhoBTB RhoBTB subfamil 97.6 0.00029 6.3E-09 68.3 9.1 87 240-326 84-192 (195)
384 cd01892 Miro2 Miro2 subfamily. 97.6 0.00045 9.7E-09 64.8 10.0 119 336-459 3-139 (169)
385 PLN03071 GTP-binding nuclear p 97.6 0.00029 6.3E-09 69.4 9.0 85 240-327 82-169 (219)
386 cd04107 Rab32_Rab38 Rab38/Rab3 97.6 0.00012 2.7E-09 70.4 6.3 141 338-483 1-170 (201)
387 cd04127 Rab27A Rab27a subfamil 97.6 0.00015 3.3E-09 67.8 6.6 25 337-361 4-28 (180)
388 cd04114 Rab30 Rab30 subfamily. 97.6 0.00017 3.6E-09 66.6 6.7 56 337-393 7-67 (169)
389 TIGR00503 prfC peptide chain r 97.5 0.00095 2.1E-08 74.4 13.6 67 205-287 79-145 (527)
390 cd04132 Rho4_like Rho4-like su 97.5 0.00014 3E-09 68.7 6.1 55 338-393 1-60 (187)
391 PRK09435 membrane ATPase/prote 97.5 0.0003 6.4E-09 74.0 9.0 104 204-330 147-260 (332)
392 PF01926 MMR_HSR1: 50S ribosom 97.5 0.00024 5.2E-09 62.3 6.9 72 204-283 45-116 (116)
393 PLN00223 ADP-ribosylation fact 97.5 0.00026 5.6E-09 67.5 7.7 55 336-392 16-71 (181)
394 PRK12739 elongation factor G; 97.5 0.00056 1.2E-08 78.6 11.7 70 204-289 71-140 (691)
395 PF08477 Miro: Miro-like prote 97.5 0.00017 3.6E-09 62.9 5.8 56 339-394 1-62 (119)
396 cd04147 Ras_dva Ras-dva subfam 97.5 0.00016 3.5E-09 69.5 6.3 54 339-394 1-59 (198)
397 smart00177 ARF ARF-like small 97.5 0.00018 3.8E-09 67.9 6.4 56 336-393 12-68 (175)
398 PRK04004 translation initiatio 97.5 0.001 2.2E-08 75.0 13.4 104 208-327 73-215 (586)
399 PLN03108 Rab family protein; P 97.5 0.00064 1.4E-08 66.3 10.3 86 239-326 74-164 (210)
400 cd04117 Rab15 Rab15 subfamily. 97.5 0.0002 4.2E-09 66.4 6.3 55 338-393 1-60 (161)
401 PTZ00141 elongation factor 1- 97.5 0.0014 2.9E-08 71.8 13.7 111 204-328 83-223 (446)
402 cd00882 Ras_like_GTPase Ras-li 97.5 9.1E-05 2E-09 64.6 3.8 53 342-396 1-59 (157)
403 KOG1489|consensus 97.5 0.00067 1.5E-08 70.2 10.5 112 206-327 244-364 (366)
404 PTZ00416 elongation factor 2; 97.5 0.00012 2.6E-09 85.7 5.9 120 336-459 18-184 (836)
405 cd01883 EF1_alpha Eukaryotic e 97.5 6.1E-05 1.3E-09 74.1 2.9 55 339-393 1-88 (219)
406 smart00174 RHO Rho (Ras homolo 97.5 0.00016 3.5E-09 67.1 5.6 54 340-394 1-58 (174)
407 PRK00741 prfC peptide chain re 97.5 0.001 2.3E-08 74.1 12.8 68 205-288 78-145 (526)
408 cd04148 RGK RGK subfamily. Th 97.5 0.0002 4.4E-09 70.5 6.5 56 338-393 1-61 (221)
409 cd04133 Rop_like Rop subfamily 97.5 0.00035 7.6E-09 66.6 7.8 88 240-328 69-171 (176)
410 cd04111 Rab39 Rab39 subfamily. 97.5 0.00018 4E-09 70.3 5.9 56 337-393 2-63 (211)
411 COG0536 Obg Predicted GTPase [ 97.5 0.0011 2.4E-08 69.3 11.7 118 204-330 205-333 (369)
412 cd04109 Rab28 Rab28 subfamily. 97.5 0.00021 4.6E-09 69.8 6.2 143 338-486 1-171 (215)
413 cd01852 AIG1 AIG1 (avrRpt2-ind 97.4 0.00066 1.4E-08 65.4 9.4 123 205-331 48-185 (196)
414 cd01882 BMS1 Bms1. Bms1 is an 97.4 0.00095 2.1E-08 66.2 10.7 92 205-315 82-181 (225)
415 cd04108 Rab36_Rab34 Rab34/Rab3 97.4 0.00027 5.8E-09 66.4 6.5 54 339-393 2-60 (170)
416 cd01870 RhoA_like RhoA-like su 97.4 0.00028 6.2E-09 65.5 6.6 55 338-393 2-60 (175)
417 cd04131 Rnd Rnd subfamily. Th 97.4 0.00055 1.2E-08 65.2 8.6 87 240-327 69-173 (178)
418 TIGR02034 CysN sulfate adenyly 97.4 6.5E-05 1.4E-09 81.0 2.3 22 338-359 1-22 (406)
419 TIGR00483 EF-1_alpha translati 97.4 0.00018 3.9E-09 77.9 5.8 59 334-392 4-95 (426)
420 cd04134 Rho3 Rho3 subfamily. 97.4 0.00052 1.1E-08 65.5 8.4 89 241-329 69-173 (189)
421 TIGR01393 lepA GTP-binding pro 97.4 0.00052 1.1E-08 77.6 9.5 118 338-460 4-152 (595)
422 cd01885 EF2 EF2 (for archaea a 97.4 0.00073 1.6E-08 67.1 9.4 67 205-287 72-138 (222)
423 cd04115 Rab33B_Rab33A Rab33B/R 97.4 0.0012 2.6E-08 61.5 10.4 85 240-326 72-165 (170)
424 KOG1249|consensus 97.4 0.00041 9E-09 75.8 8.1 130 236-374 103-261 (572)
425 COG1100 GTPase SAR1 and relate 97.4 0.00027 5.9E-09 68.3 6.2 58 337-394 5-66 (219)
426 PRK04004 translation initiatio 97.4 0.00013 2.8E-09 82.2 4.5 26 337-362 6-31 (586)
427 PLN03108 Rab family protein; P 97.4 0.00033 7.2E-09 68.3 6.8 143 337-483 6-174 (210)
428 PF00025 Arf: ADP-ribosylation 97.4 0.00047 1E-08 65.4 7.7 87 241-327 79-173 (175)
429 PLN00023 GTP-binding protein; 97.4 0.0021 4.6E-08 67.5 12.9 146 336-485 20-235 (334)
430 TIGR00484 EF-G translation elo 97.4 0.00088 1.9E-08 77.0 10.8 70 204-289 73-142 (689)
431 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.4 0.00082 1.8E-08 64.4 8.9 88 240-327 73-177 (182)
432 PLN03071 GTP-binding nuclear p 97.4 0.00041 8.9E-09 68.3 7.0 59 336-394 12-74 (219)
433 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.4 0.00041 8.9E-09 65.3 6.7 139 337-481 2-164 (172)
434 cd04126 Rab20 Rab20 subfamily. 97.4 0.00028 6.1E-09 69.9 5.8 54 338-393 1-55 (220)
435 cd04117 Rab15 Rab15 subfamily. 97.4 0.0017 3.6E-08 60.2 10.6 86 240-327 69-159 (161)
436 PRK00007 elongation factor G; 97.4 0.001 2.2E-08 76.5 11.1 70 205-290 74-143 (693)
437 PRK10218 GTP-binding protein; 97.3 0.0009 1.9E-08 75.8 10.2 117 337-457 5-147 (607)
438 COG0481 LepA Membrane GTPase L 97.3 0.0011 2.3E-08 71.9 10.1 108 209-333 79-189 (603)
439 cd04170 EF-G_bact Elongation f 97.3 0.00075 1.6E-08 68.4 8.5 69 205-289 63-131 (268)
440 PLN00116 translation elongatio 97.3 0.00027 5.9E-09 82.9 6.0 105 336-444 18-163 (843)
441 cd04143 Rhes_like Rhes_like su 97.3 0.00027 5.9E-09 71.2 5.2 54 338-393 1-59 (247)
442 cd04137 RheB Rheb (Ras Homolog 97.3 0.0016 3.4E-08 61.0 10.0 90 240-329 69-162 (180)
443 KOG2655|consensus 97.3 0.00073 1.6E-08 71.4 8.4 152 337-495 21-202 (366)
444 KOG1487|consensus 97.3 8.9E-05 1.9E-09 74.7 1.4 68 338-406 60-130 (358)
445 COG2229 Predicted GTPase [Gene 97.3 0.002 4.4E-08 61.9 10.5 103 209-326 71-174 (187)
446 COG3276 SelB Selenocysteine-sp 97.3 0.002 4.3E-08 69.3 11.6 114 200-329 44-161 (447)
447 cd04162 Arl9_Arfrp2_like Arl9/ 97.3 0.00046 1E-08 64.4 6.0 53 340-393 2-55 (164)
448 PF10662 PduV-EutP: Ethanolami 97.3 0.00063 1.4E-08 63.3 6.6 97 339-448 3-106 (143)
449 cd04135 Tc10 TC10 subfamily. 97.3 0.00063 1.4E-08 63.1 6.7 87 240-326 68-170 (174)
450 PRK12740 elongation factor G; 97.3 0.0018 3.8E-08 74.2 11.5 68 205-288 59-126 (668)
451 PRK13351 elongation factor G; 97.2 0.00042 9.1E-09 79.6 6.2 120 337-460 8-155 (687)
452 cd04134 Rho3 Rho3 subfamily. 97.2 0.00063 1.4E-08 65.0 6.5 54 339-393 2-59 (189)
453 smart00053 DYNc Dynamin, GTPas 97.2 0.0022 4.8E-08 64.6 10.5 90 207-301 126-217 (240)
454 COG2895 CysN GTPases - Sulfate 97.2 0.0007 1.5E-08 71.0 6.8 109 202-328 82-213 (431)
455 cd01874 Cdc42 Cdc42 subfamily. 97.2 0.00066 1.4E-08 64.2 6.2 56 338-394 2-61 (175)
456 cd04130 Wrch_1 Wrch-1 subfamil 97.2 0.00078 1.7E-08 63.0 6.3 55 338-394 1-60 (173)
457 cd04169 RF3 RF3 subfamily. Pe 97.1 0.0047 1E-07 63.0 12.0 70 204-289 69-138 (267)
458 TIGR01394 TypA_BipA GTP-bindin 97.1 0.0014 3E-08 74.2 8.8 114 339-456 3-142 (594)
459 PRK13351 elongation factor G; 97.1 0.0046 9.9E-08 71.1 13.1 69 205-289 72-140 (687)
460 cd04103 Centaurin_gamma Centau 97.1 0.0013 2.9E-08 61.2 7.2 86 241-326 63-155 (158)
461 cd01871 Rac1_like Rac1-like su 97.1 0.00098 2.1E-08 62.9 6.4 55 338-393 2-60 (174)
462 PLN00043 elongation factor 1-a 97.1 0.0048 1E-07 67.6 12.6 110 205-328 84-223 (447)
463 KOG0410|consensus 97.1 0.0003 6.6E-09 72.9 2.6 58 337-395 178-239 (410)
464 cd04177 RSR1 RSR1 subgroup. R 97.1 0.0021 4.6E-08 59.6 8.1 87 241-327 70-161 (168)
465 KOG0075|consensus 97.1 0.013 2.7E-07 54.8 12.8 118 198-330 57-182 (186)
466 cd04104 p47_IIGP_like p47 (47- 97.1 0.0031 6.7E-08 60.9 9.4 112 207-331 53-185 (197)
467 cd01899 Ygr210 Ygr210 subfamil 97.0 0.0034 7.4E-08 65.7 10.3 56 274-332 214-271 (318)
468 COG1084 Predicted GTPase [Gene 97.0 0.0051 1.1E-07 64.1 11.3 114 208-328 217-334 (346)
469 PTZ00132 GTP-binding nuclear p 97.0 0.0015 3.2E-08 63.6 7.0 58 336-393 8-69 (215)
470 cd04128 Spg1 Spg1p. Spg1p (se 97.0 0.0014 3.1E-08 62.5 6.6 56 338-393 1-60 (182)
471 COG5019 CDC3 Septin family pro 97.0 0.00096 2.1E-08 70.3 5.8 148 336-489 22-200 (373)
472 TIGR00490 aEF-2 translation el 97.0 0.00063 1.4E-08 78.6 4.7 138 320-459 4-167 (720)
473 cd04131 Rnd Rnd subfamily. Th 97.0 0.0016 3.5E-08 62.0 6.7 55 338-393 2-60 (178)
474 COG5257 GCD11 Translation init 97.0 0.0036 7.8E-08 65.1 9.4 108 209-332 89-204 (415)
475 PTZ00141 elongation factor 1- 97.0 0.00071 1.5E-08 74.0 4.6 25 335-359 5-29 (446)
476 PF00025 Arf: ADP-ribosylation 97.0 0.0013 2.9E-08 62.3 5.9 57 335-393 12-69 (175)
477 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.0 0.0051 1.1E-07 61.1 10.1 88 240-327 69-173 (222)
478 PRK05433 GTP-binding protein L 97.0 0.0022 4.8E-08 72.6 8.5 119 337-459 7-155 (600)
479 KOG1145|consensus 96.9 0.012 2.6E-07 64.9 13.3 106 206-328 201-314 (683)
480 cd04121 Rab40 Rab40 subfamily. 96.9 0.0021 4.6E-08 62.0 6.8 121 336-460 5-142 (189)
481 PF00071 Ras: Ras family; Int 96.9 0.0016 3.5E-08 59.5 5.7 53 339-391 1-57 (162)
482 PRK07560 elongation factor EF- 96.9 0.001 2.2E-08 76.9 5.2 120 319-442 4-150 (731)
483 cd04129 Rho2 Rho2 subfamily. 96.9 0.0022 4.7E-08 61.0 6.5 55 338-393 2-60 (187)
484 cd04129 Rho2 Rho2 subfamily. 96.9 0.0023 5.1E-08 60.8 6.7 88 241-328 70-171 (187)
485 cd04165 GTPBP1_like GTPBP1-lik 96.8 0.0015 3.2E-08 64.9 5.2 21 339-359 1-21 (224)
486 cd04120 Rab12 Rab12 subfamily. 96.8 0.0025 5.4E-08 62.2 6.4 139 339-482 2-164 (202)
487 COG1217 TypA Predicted membran 96.7 0.022 4.7E-07 62.0 12.9 108 208-332 70-197 (603)
488 cd04133 Rop_like Rop subfamily 96.7 0.0035 7.5E-08 59.8 6.3 56 338-394 2-61 (176)
489 cd01875 RhoG RhoG subfamily. 96.7 0.0032 7E-08 60.3 6.1 56 337-393 3-62 (191)
490 cd01888 eIF2_gamma eIF2-gamma 96.7 0.0025 5.4E-08 61.9 5.4 23 338-360 1-23 (203)
491 cd04102 RabL3 RabL3 (Rab-like3 96.7 0.0033 7.2E-08 61.5 6.3 56 338-393 1-65 (202)
492 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 96.7 0.0036 7.8E-08 62.2 6.5 55 338-393 2-60 (222)
493 PRK12740 elongation factor G; 96.6 0.0016 3.6E-08 74.4 4.2 114 343-460 1-142 (668)
494 PTZ00416 elongation factor 2; 96.6 0.006 1.3E-07 71.7 8.5 66 206-287 92-157 (836)
495 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.6 0.0055 1.2E-07 58.7 6.8 56 336-392 4-63 (182)
496 COG1163 DRG Predicted GTPase [ 96.5 0.0058 1.3E-07 63.7 6.9 112 205-329 109-288 (365)
497 PRK04000 translation initiatio 96.5 0.0017 3.8E-08 70.1 3.1 26 335-360 7-32 (411)
498 cd04105 SR_beta Signal recogni 96.5 0.0078 1.7E-07 58.6 7.2 69 207-290 49-125 (203)
499 KOG0094|consensus 96.5 0.022 4.7E-07 55.6 10.0 92 237-330 88-185 (221)
500 TIGR00750 lao LAO/AO transport 96.5 0.014 3.1E-07 60.4 9.6 101 205-328 126-236 (300)
No 1
>KOG2423|consensus
Probab=100.00 E-value=1.7e-133 Score=1022.09 Aligned_cols=458 Identities=60% Similarity=1.034 Sum_probs=444.2
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCcccHhhhhhhhhcccCcccccCCCCccccCCCCCCCCCCCcccccCCCccccC
Q psy6781 33 RKEGRINRAPHSMNPDRPTEGLKGVAKPRTKATIRRLQMYRCFKAKRDKTGKIIHPAPFQGWVPSGTQSRVEPNRKWFDN 112 (534)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~~wf~n 112 (534)
.|..+|+.|+|||||+|... ||.++||+++||+|||||++|||+||+.|+|+++|+||++.++ +||||||||||||
T Consensus 7 ~k~~~~~~~~hs~np~r~~~--k~~~~~r~k~tv~rL~Myrs~k~krns~Gkil~~a~fQss~~~--~aRieP~rkWFgn 82 (572)
T KOG2423|consen 7 EKSRTIRESKHSTNPGRLRG--KGENNYRNKKTVKRLNMYRSGKPKRNSKGKILKAAPFQSSLAP--VARIEPDRKWFGN 82 (572)
T ss_pred ccccccCCccccCCcccccc--ccccccccHHHHHHHHHHhccCcccccCCccccccccccccCc--ccccCCCchhccC
Confidence 44456999999999999864 7999999999999999999999999999999999999999998 8999999999999
Q ss_pred ccccchhhHHHHHHHHHhhhcCCcceeecccccccccccccccccceEEEecCccccccccccCCCCCCCccCCHHHHHH
Q psy6781 113 TRVISQNSLQKFQEEFGKAIKNPYDVIMKPTNLPITLLNEVRKHERVHVLDTESYESVFGKKKQRKKANLSITNESELAA 192 (534)
Q Consensus 113 t~v~~q~~l~~f~~~~~~~~~~p~~v~~~~~klp~~ll~~~~~~~~~~~~~~e~~~~~f~~~~~rkr~~l~~gd~~~l~~ 192 (534)
||||+|.+||+||+||+++++|||+||||++|||||||++.++..|+|++++|+|+++||+|++||||+|.+.|+++|..
T Consensus 83 tRvI~q~~Lq~Fr~e~g~~~~dpyqVllk~~KlPmSLL~e~~k~~rvhvldtesF~~tFG~KsqRKRp~L~~s~le~L~k 162 (572)
T KOG2423|consen 83 TRVISQTELQKFREELGKKLKDPYQVLLKQSKLPMSLLQEKTKTPRVHVLDTESFEDTFGPKSQRKRPKLTASSLEELSK 162 (572)
T ss_pred ceeecHHHHHHHHHHHHhhhcChhhheeecCCCChhhhhccccCcceeeecccchhhhhCchhhhcCcccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhC
Q psy6781 193 LVQTSNENYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREK 272 (534)
Q Consensus 193 ~~~~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~ 272 (534)
.++++.+.|.+.....+..+..|.+...++++|.+||++|+|.++|++|+++||||+|+|||+|++++|..+++||++++
T Consensus 163 ~a~e~~~~yee~~~~~~~~e~~g~~~~~~~~if~kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~ 242 (572)
T KOG2423|consen 163 AAEESDDKYEEKKLGDLREEEDGVRKAARDAIFSKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEK 242 (572)
T ss_pred HhhhhhhhhhhhccccchhhcccchHHHHHHHHhccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcC
Confidence 99999999997656666677889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhH
Q psy6781 273 PHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSS 352 (534)
Q Consensus 273 ~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSS 352 (534)
+|||+|+|||||||+|.|++..|+..|+++||+++||+|..+++|+++|+++|+||+++|.++++|.|||||||||||||
T Consensus 243 phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSS 322 (572)
T KOG2423|consen 243 PHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSS 322 (572)
T ss_pred CcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCCcchHHHHHccccccccCCCchhhHHHHHHhhcc
Q psy6781 353 IINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKK 432 (534)
Q Consensus 353 liN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~v~~i~~~~~~i~~iL~r~~k 432 (534)
+||+|+.+++|.|+++||.|++|||+.++.+|+||||||+++|+ .+++.+.+|+|+|+++++.+|++||..+|.|+.+
T Consensus 323 iINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps--~dset~ivLkGvVRVenv~~pe~yi~~vl~R~k~ 400 (572)
T KOG2423|consen 323 IINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPS--SDSETDIVLKGVVRVENVKNPEDYIDGVLERCKP 400 (572)
T ss_pred HHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCC--CCchHHHHhhceeeeeecCCHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999 6888999999999999999999999999999999
Q ss_pred ceeeehcCCCCCCCHHHHHHHHHHHhCCccccCcchHHHHHHHHHHHHHcCCCCcccCCCCCCC
Q psy6781 433 VHLVKTYGIDEWEDTEDFLKKLAFKWGKIKKKGEPVITASAKMVLNDWQRGKLPYYTVPEGFEV 496 (534)
Q Consensus 433 ~~l~~~ykId~~~d~~efLe~la~k~g~l~kgG~pD~~~aA~~vL~d~~~Gkl~~~~~pp~~e~ 496 (534)
.+|.+.|+|+.|.|..+||++||.+.|+|+|||+||+..+|++||+||++||||||++||+.|.
T Consensus 401 ehl~rtYkI~~w~d~~dfle~La~k~GkLlKGGEPd~~~vsKmvLnDwqRGkiP~FVpPp~~e~ 464 (572)
T KOG2423|consen 401 EHLSRTYKISGWNDSTDFLEKLAIKQGKLLKGGEPDLVVVSKMVLNDWQRGKIPFFVPPPGLEE 464 (572)
T ss_pred HHHHhhhCCCccccHHHHHHHHHHHhCccccCCCCchhHHHHHHhhHhhcCCCceecCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999997655
No 2
>KOG1424|consensus
Probab=100.00 E-value=1.9e-52 Score=440.94 Aligned_cols=318 Identities=28% Similarity=0.493 Sum_probs=261.5
Q ss_pred cccccCCCCCCCc-cCCHHHHHHhhhcccccccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEE
Q psy6781 171 FGKKKQRKKANLS-ITNESELAALVQTSNENYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVY 249 (534)
Q Consensus 171 f~~~~~rkr~~l~-~gd~~~l~~~~~~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~ 249 (534)
+.-...++||.|. ..+.++|...+.+.|.+|. |...-+.+..++..++. +.|..+|+|+|+|++.||+||+
T Consensus 109 ~~~L~iPRRP~W~~~~s~eeLd~~EkeaFlewr--r~L~~Lqe~e~l~lTpF------ErNLE~WRQLWRVlErSDivvq 180 (562)
T KOG1424|consen 109 ASRLDIPRRPPWTLEMSKEELDRQEKEAFLEWR--RKLASLQENEKLVLTPF------ERNLEIWRQLWRVLERSDIVVQ 180 (562)
T ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHhhhcCCeeechh------hhCHHHHHHHHHHHhhcceEEE
Confidence 3344578999998 5699999999999999997 32222234445444443 5689999999999999999999
Q ss_pred EEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccC-----CC---------
Q psy6781 250 VLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMT-----HP--------- 315 (534)
Q Consensus 250 VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~-----~~--------- 315 (534)
|||||+|+..+|+.|++|++...++|..+||+||+||+++.+..+|.+||.+.+..++|.++.. .+
T Consensus 181 IVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~ 260 (562)
T KOG1424|consen 181 IVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRS 260 (562)
T ss_pred EeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhc
Confidence 9999999999999999999987788999999999999999999999999998875444443221 00
Q ss_pred -CC------------hHHHHHHHH----------H------Hhhhh---ccccceEEEEEecCCCchhHHHHhhhCCCce
Q psy6781 316 -FG------------KGSIINLLR----------Q------FSKLH---TERKQISVGFIGYPNVGKSSIINALRNKKVC 363 (534)
Q Consensus 316 -~g------------i~~Li~~L~----------~------~~~~~---~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~ 363 (534)
.+ .+.++..++ + +.+.+ ..+..++||+||||||||||+||+|.|.+..
T Consensus 261 ~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkV 340 (562)
T KOG1424|consen 261 LDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKV 340 (562)
T ss_pred ccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCcee
Confidence 00 110111111 0 01111 1123699999999999999999999999999
Q ss_pred eeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCCcchHHHHHccccccccCCCchhhHHHHHHhhccceeeehcCCCC
Q psy6781 364 KTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDE 443 (534)
Q Consensus 364 ~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~ 443 (534)
.|+.+||.|+|+|.+.+.+.+.||||||+++|++ ..+..+++|.|+++++++.++...+..++.++..++|+.+|+..+
T Consensus 341 sVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf-~~~r~emvl~GiLPIDQmrd~~~~~~llaerIP~~~Le~~Y~~k~ 419 (562)
T KOG1424|consen 341 SVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSF-SPTRAEMVLNGILPIDQLRDHYGAVGLLAERIPRHVLERLYGHKP 419 (562)
T ss_pred eeecCCCCcceeEEEEcCCCceecCCCCccccCC-CchHHHHHHhcCccHHHhhcccchHHHHHHhcCHHHHHHHhCCCc
Confidence 9999999999999999999999999999999996 445789999999999999999999999999999999999996321
Q ss_pred --------CCCHHHHHHHHHHHhCCccccCcchHHHHHHHHHHHHHcCCCCcccCCCCCCCC
Q psy6781 444 --------WEDTEDFLKKLAFKWGKIKKKGEPVITASAKMVLNDWQRGKLPYYTVPEGFEVP 497 (534)
Q Consensus 444 --------~~d~~efLe~la~k~g~l~kgG~pD~~~aA~~vL~d~~~Gkl~~~~~pp~~e~~ 497 (534)
...+.++|.++|..+|++..+|.+|..+||+.||+||..|||+||.+||++++.
T Consensus 420 ~e~~~~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILKDyv~GKL~~~~~PPg~~~~ 481 (562)
T KOG1424|consen 420 REDPEDSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILKDYVSGKLLYCFPPPGYEPQ 481 (562)
T ss_pred ccccCCCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHHHHhCCeeeeeeCCCCCCcc
Confidence 125789999999999999999999999999999999999999999999997765
No 3
>KOG2484|consensus
Probab=100.00 E-value=2.2e-51 Score=422.42 Aligned_cols=263 Identities=40% Similarity=0.680 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEee
Q psy6781 230 SKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFH 309 (534)
Q Consensus 230 skr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~ 309 (534)
-+...+++.++++.+||||+|+|||||++++|+.+|+.+.....+|++|+||||+||+|.+.+..|+.||+..+|+++|.
T Consensus 133 ~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fk 212 (435)
T KOG2484|consen 133 KKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFK 212 (435)
T ss_pred HHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceee
Confidence 45678899999999999999999999999999999999865455699999999999999999999999999999999998
Q ss_pred eccCC------------CCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE
Q psy6781 310 ASMTH------------PFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY 377 (534)
Q Consensus 310 ~Sa~~------------~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~ 377 (534)
+|... .+|.+.|+..|..++..+.-++.++|||||||||||||+||+|...++|.+++.||.|+..|+
T Consensus 213 ast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe 292 (435)
T KOG2484|consen 213 ASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE 292 (435)
T ss_pred cccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh
Confidence 87532 258889999999998877778899999999999999999999999999999999999999999
Q ss_pred EEeCccEEEEeCCCcccCCCCCcchHHHHHccccccccCCCchhhHHHHHHhhccceeeehcCCCCCCCHHHHHHHHHHH
Q psy6781 378 ITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFK 457 (534)
Q Consensus 378 ~~~~~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~~efLe~la~k 457 (534)
+.++.+|.|+|+||+++++. +.....+|++++++..+.+|...+..+|.++.+..+...|.+..+...++||.++|++
T Consensus 293 V~Ldk~i~llDsPgiv~~~~--~~~~~~~Lrn~~~i~~~~dp~~~v~~iL~~~~~e~~~~~Y~~~~~~~~~~Fl~~~ar~ 370 (435)
T KOG2484|consen 293 VKLDKKIRLLDSPGIVPPSI--DEKDALALRNCIPIGKVADPVTPVSCILKRCSKESRSVLYNIPSIRATDDFLEKFARR 370 (435)
T ss_pred eeccCCceeccCCceeecCC--CccchhhhhcccccccccCccchHHHHHHHhhHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999883 2223799999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccCcchHHHHHHHHHHHHHcCCCCcccCCCCC
Q psy6781 458 WGKIKKKGEPVITASAKMVLNDWQRGKLPYYTVPEGF 494 (534)
Q Consensus 458 ~g~l~kgG~pD~~~aA~~vL~d~~~Gkl~~~~~pp~~ 494 (534)
+|++.+||.||++.||..||+||+.|||+||++||..
T Consensus 371 ~G~~~kGG~pd~~~AA~~vl~Dw~~Gki~y~~~pp~~ 407 (435)
T KOG2484|consen 371 RGLLLKGGIPDVNAAAFAVLNDWRTGKIGYYTLPPTS 407 (435)
T ss_pred HhhhhcCCCCcHHHHHHHHHHhhccCceeeeeCCChh
Confidence 9999999999999999999999999999999999983
No 4
>PF08153 NGP1NT: NGP1NT (NUC091) domain; InterPro: IPR012971 This N-terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [].
Probab=100.00 E-value=2.2e-49 Score=353.58 Aligned_cols=129 Identities=49% Similarity=0.879 Sum_probs=122.7
Q ss_pred hcccCcccccCCCCccccCCCCCCCCCCCcccccCCCccccCccccchhhHHHHHHHHHhhhcCCcceeecccccccccc
Q psy6781 71 MYRCFKAKRDKTGKIIHPAPFQGWVPSGTQSRVEPNRKWFDNTRVISQNSLQKFQEEFGKAIKNPYDVIMKPTNLPITLL 150 (534)
Q Consensus 71 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~~wf~nt~v~~q~~l~~f~~~~~~~~~~p~~v~~~~~klp~~ll 150 (534)
||++|||+||++||||++|+||+... ++||||||||||||||||+|++|++||+||+++.+|||+||||++|||||||
T Consensus 1 My~~gk~~Rn~~Gkiik~a~~q~~~~--~~aRI~PdRrWFgNTRvI~Q~~L~~FReem~~~~~DPy~VlLk~~KLPmsLL 78 (130)
T PF08153_consen 1 MYKSGKPKRNRKGKIIKAAPFQSKEG--PPARIEPDRRWFGNTRVISQEALEKFREEMGEKVKDPYSVLLKRSKLPMSLL 78 (130)
T ss_pred CCCCCCcccCCCCCEeechhccCCCC--CccccccchhhhcCceEECHHHHHHHHHHHHHhhcCCceEeeeCCcCCHHHh
Confidence 99999999999999999999997755 5999999999999999999999999999999999999999999999999999
Q ss_pred ccc-ccccceEEEecCccccccccccCCCCCCCccCCHHHHHHhhhcccccc
Q psy6781 151 NEV-RKHERVHVLDTESYESVFGKKKQRKKANLSITNESELAALVQTSNENY 201 (534)
Q Consensus 151 ~~~-~~~~~~~~~~~e~~~~~f~~~~~rkr~~l~~gd~~~l~~~~~~~~~~~ 201 (534)
+|. .+..+++++++|+|++|||+|++||||+|.++|+++|+..++...+.|
T Consensus 79 ~d~~~k~~~~~il~te~F~~tFGpKaqRKRpkL~~~~~eeLa~~a~~~~~~Y 130 (130)
T PF08153_consen 79 QDSGTKQKRVHILETEPFEDTFGPKAQRKRPKLSVSSLEELAKKAEESQESY 130 (130)
T ss_pred cccccccCCcceeecCCHHHHhCCcccccCccccccCHHHHHHHHHHhhccC
Confidence 998 888899999999999999999999999999999999999887766554
No 5
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=6.5e-44 Score=362.18 Aligned_cols=263 Identities=30% Similarity=0.444 Sum_probs=226.0
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhc
Q psy6781 222 DWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSK 301 (534)
Q Consensus 222 ~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~ 301 (534)
+|++ ||+.+++++++++++++|+||+|+|||+|++++++.+++++. ++|+|+|+||+||++......|.+++.+
T Consensus 2 ~Wfp--gHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~----~kp~IiVlNK~DL~~~~~~~~~~~~~~~ 75 (276)
T TIGR03596 2 QWFP--GHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG----NKPRLIVLNKADLADPAVTKQWLKYFEE 75 (276)
T ss_pred ccCh--HHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC----CCCEEEEEEccccCCHHHHHHHHHHHHH
Confidence 3665 569999999999999999999999999999999998988873 5899999999999987767889888865
Q ss_pred cCCeEEeeeccCCCCChHHHHHHHHHHhhhhcc--------ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCcee
Q psy6781 302 EYPTIAFHASMTHPFGKGSIINLLRQFSKLHTE--------RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK 373 (534)
Q Consensus 302 ~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~--------~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk 373 (534)
. ...++.+|+.++.|+..|++.|.++++.... ...++|+++|+||||||||||+|.+...+.+++.||+|+
T Consensus 76 ~-~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~ 154 (276)
T TIGR03596 76 K-GIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK 154 (276)
T ss_pred c-CCeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec
Confidence 2 2345667899999999999999887764321 246889999999999999999999999999999999999
Q ss_pred eeEEEEeCccEEEEeCCCcccCCCCCc-chHHHHHccccccccCCC--chhhHHHHHHhhccceeeehcCCCCCC-CHHH
Q psy6781 374 VWQYITLMRRIYLIDCPGVVYDMTNVE-TDTEKVLRGVVRVENIDD--PVQYIDAVLERIKKVHLVKTYGIDEWE-DTED 449 (534)
Q Consensus 374 ~~~~~~~~~~i~liDtPGi~~p~~~~~-~~~e~vL~gvv~v~~i~~--~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~e 449 (534)
..+++.++.++.|+||||+..|..... ....+++.|+++.+.+.. +.+++..+|.+..+..+...|+++... +..+
T Consensus 155 ~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~y~i~~~~~~~~~ 234 (276)
T TIGR03596 155 GQQWIKLSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEHYPERLKERYKLDELPEDIVE 234 (276)
T ss_pred ceEEEEeCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhhCHHHHHHHhCcCCCCCCHHH
Confidence 999999988999999999999874322 235678899988877643 346777778888888899999998654 8899
Q ss_pred HHHHHHHHhCCccccCcchHHHHHHHHHHHHHcCCCCcccCC
Q psy6781 450 FLKKLAFKWGKIKKKGEPVITASAKMVLNDWQRGKLPYYTVP 491 (534)
Q Consensus 450 fLe~la~k~g~l~kgG~pD~~~aA~~vL~d~~~Gkl~~~~~p 491 (534)
||+.+|+++|++.|||+||+++||+.||+||+.|+||+|++.
T Consensus 235 ~l~~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld 276 (276)
T TIGR03596 235 LLEAIAKKRGCLLKGGELDLDRAAEILLNDFRKGKLGRITLE 276 (276)
T ss_pred HHHHHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCceecC
Confidence 999999999999999999999999999999999999999863
No 6
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=1.1e-43 Score=362.41 Aligned_cols=263 Identities=29% Similarity=0.467 Sum_probs=224.2
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhc
Q psy6781 222 DWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSK 301 (534)
Q Consensus 222 ~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~ 301 (534)
+|++ ||+.+.+++++++++.+|+||+|+|||+|++++++.+++++. ++|.|+|+||+||++......|.+++.+
T Consensus 5 ~wfp--gHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~ 78 (287)
T PRK09563 5 QWFP--GHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEE 78 (287)
T ss_pred cCcH--HHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHH
Confidence 4776 469999999999999999999999999999999988888774 5899999999999987767889988864
Q ss_pred cCCeEEeeeccCCCCChHHHHHHHHHHhhhhc--------cccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCcee
Q psy6781 302 EYPTIAFHASMTHPFGKGSIINLLRQFSKLHT--------ERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK 373 (534)
Q Consensus 302 ~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~--------~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk 373 (534)
.. ..++.+|+.++.|+..|++.|.++++... ....++|+++|+||||||||||+|++...+.+++.||+|+
T Consensus 79 ~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~ 157 (287)
T PRK09563 79 QG-IKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTK 157 (287)
T ss_pred cC-CeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEE
Confidence 32 23456788999999999999988776432 1356899999999999999999999999999999999999
Q ss_pred eeEEEEeCccEEEEeCCCcccCCCCCc-chHHHHHccccccccCC--CchhhHHHHHHhhccceeeehcCCCCC-CCHHH
Q psy6781 374 VWQYITLMRRIYLIDCPGVVYDMTNVE-TDTEKVLRGVVRVENID--DPVQYIDAVLERIKKVHLVKTYGIDEW-EDTED 449 (534)
Q Consensus 374 ~~~~~~~~~~i~liDtPGi~~p~~~~~-~~~e~vL~gvv~v~~i~--~~~~~i~~iL~r~~k~~l~~~ykId~~-~d~~e 449 (534)
+++++.++.+++|+||||+..|....+ ....+++.|++..+.+. ++.+++..+|.+..+..|...|+++.+ .+.++
T Consensus 158 ~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~~~y~~~~~~~~~~~ 237 (287)
T PRK09563 158 AQQWIKLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKHYPERLKERYKLDELPEDILE 237 (287)
T ss_pred EEEEEEeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhhCHHHHHHHhCCCCCCCCHHH
Confidence 999999999999999999998874322 12456788888776553 334677777777777788899999754 58899
Q ss_pred HHHHHHHHhCCccccCcchHHHHHHHHHHHHHcCCCCcccCC
Q psy6781 450 FLKKLAFKWGKIKKKGEPVITASAKMVLNDWQRGKLPYYTVP 491 (534)
Q Consensus 450 fLe~la~k~g~l~kgG~pD~~~aA~~vL~d~~~Gkl~~~~~p 491 (534)
||+.+|+++|++.|||+||+++||++||+||++||||+|+++
T Consensus 238 ~l~~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld 279 (287)
T PRK09563 238 LLEAIARKRGALRKGGEIDYERASELLLNEFRNGKLGKITLE 279 (287)
T ss_pred HHHHHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCcEEcc
Confidence 999999999999999999999999999999999999999865
No 7
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=351.84 Aligned_cols=259 Identities=37% Similarity=0.570 Sum_probs=214.0
Q ss_pred hhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEE
Q psy6781 228 GQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIA 307 (534)
Q Consensus 228 ~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~ 307 (534)
|++.+.|++++++++.+|+|++|+|||+|++++++.+++++.. ++.++|+||+||+|...+..|.+++.+..+...
T Consensus 19 g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~----k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~ 94 (322)
T COG1161 19 GHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE----KPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKP 94 (322)
T ss_pred CchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc----CCcEEEEehhhcCCHHHHHHHHHHHHhcCCCcc
Confidence 5789999999999999999999999999999999999999864 666999999999999999999999998876666
Q ss_pred eeeccCCCCChHHHH--------HHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE
Q psy6781 308 FHASMTHPFGKGSII--------NLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT 379 (534)
Q Consensus 308 f~~Sa~~~~gi~~Li--------~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~ 379 (534)
+.+++..+.+...+. +.+.++.+.......++|++||+||||||||||+|+++..+.||+.||+|++.|++.
T Consensus 95 ~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~ 174 (322)
T COG1161 95 IFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIK 174 (322)
T ss_pred EEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEE
Confidence 667777777766666 344444433333456899999999999999999999999999999999999999999
Q ss_pred eCccEEEEeCCCcccCCCCCcchHHHHHccccccccCCCchhhHHHHHHhhc-----cceeeehcCCCCC-------CCH
Q psy6781 380 LMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIK-----KVHLVKTYGIDEW-------EDT 447 (534)
Q Consensus 380 ~~~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~v~~i~~~~~~i~~iL~r~~-----k~~l~~~ykId~~-------~d~ 447 (534)
+...++|+||||+++|....+ +.++.++...+.+.++...+..+..++. ...+...|.+..+ .+.
T Consensus 175 ~~~~i~LlDtPGii~~~~~~~---~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 251 (322)
T COG1161 175 LDDGIYLLDTPGIIPPKFDDD---ELVLLKLAPKGEIKDPVLPADEVAERLLGGLLIDEHYGEKLNITRYESNPIHRTDP 251 (322)
T ss_pred cCCCeEEecCCCcCCCCccch---HHHhhccccccccCccccChHHHHHHHHhhhhhhhhhhHhhCCcccccccccccCH
Confidence 999999999999999984322 7778888888887776554444433332 2223333444322 267
Q ss_pred HHHHHHHHHHhC-CccccCcchHHHHHHHHHHHHHcCCCCcccCCCC
Q psy6781 448 EDFLKKLAFKWG-KIKKKGEPVITASAKMVLNDWQRGKLPYYTVPEG 493 (534)
Q Consensus 448 ~efLe~la~k~g-~l~kgG~pD~~~aA~~vL~d~~~Gkl~~~~~pp~ 493 (534)
+++++.+|.++| .+.+||.+|+.+|+..+++||+.|+||||++|+.
T Consensus 252 ~~~l~~~a~~rg~~l~~~g~~d~~~~~~~~~~d~~~gklg~~~~~~~ 298 (322)
T COG1161 252 EEFLELIAKKRGWLLLKGGEPDLERAAETILKDIRNGKLGWFSLEEP 298 (322)
T ss_pred HHHHHHHHHHhhhhhcCCCCccHHHHHHHHHHHHHhCCcceeecCCc
Confidence 899999999999 7888999999999999999999999999998876
No 8
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=100.00 E-value=3.5e-32 Score=252.99 Aligned_cols=157 Identities=82% Similarity=1.406 Sum_probs=141.9
Q ss_pred HHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCC
Q psy6781 236 ELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHP 315 (534)
Q Consensus 236 el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~ 315 (534)
++|.+++++|+|++|+|+++|++..+..+++++.....++|+|+|+||+||++......|+.++.+.++..+|++|++++
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence 47899999999999999999999889999999976545699999999999998877889999998888776788999999
Q ss_pred CChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCc
Q psy6781 316 FGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGV 392 (534)
Q Consensus 316 ~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi 392 (534)
.|.+.|++.|.+++..+....+++|+++|.||||||||||+|.+...+.++++||+|++.+++.++.+++|+||||+
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 99999999999887654444578999999999999999999999999999999999999999998888999999997
No 9
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.96 E-value=2.4e-28 Score=232.28 Aligned_cols=148 Identities=41% Similarity=0.801 Sum_probs=125.0
Q ss_pred CEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeecc------------
Q psy6781 245 DVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASM------------ 312 (534)
Q Consensus 245 DvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa------------ 312 (534)
|+|++|+|||+|++++++.+.+++.....++|.|+|+||+||++++.+..|+++|.+.++.+.|.++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 89999999999999999999998532225799999999999999999999999998888777665432
Q ss_pred ------------CCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe
Q psy6781 313 ------------THPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL 380 (534)
Q Consensus 313 ------------~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~ 380 (534)
.++.|.+.|++.++++.........++|+++|+||||||||||+|.+...+.+++.||+|++.+++.+
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~ 160 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL 160 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe
Confidence 22345667777777665544334568999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCc
Q psy6781 381 MRRIYLIDCPGV 392 (534)
Q Consensus 381 ~~~i~liDtPGi 392 (534)
+.++.|+||||+
T Consensus 161 ~~~~~l~DtPGi 172 (172)
T cd04178 161 DKKVKLLDSPGI 172 (172)
T ss_pred CCCEEEEECcCC
Confidence 889999999997
No 10
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=5.2e-27 Score=214.89 Aligned_cols=141 Identities=38% Similarity=0.681 Sum_probs=123.7
Q ss_pred HHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeecc
Q psy6781 233 IWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASM 312 (534)
Q Consensus 233 ~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa 312 (534)
.|+++++.++++|+||+|+|+++|....+..+.+++.....++|+|+|+||+||++++....|.+++..... .++.+|+
T Consensus 1 ~~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~-~ii~iSa 79 (141)
T cd01857 1 VWRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGI-VVVFFSA 79 (141)
T ss_pred CHHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCC-eEEEEEe
Confidence 389999999999999999999999999988999998753358999999999999988777788888876542 3566777
Q ss_pred CCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCc
Q psy6781 313 THPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGV 392 (534)
Q Consensus 313 ~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi 392 (534)
.++.+ +++++|.||||||||||+|++...+.++..+|+|++.+++.++.+++|+||||+
T Consensus 80 ~~~~~---------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 138 (141)
T cd01857 80 LKENA---------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITLCDCPGL 138 (141)
T ss_pred cCCCc---------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEEEECCCc
Confidence 76543 689999999999999999999998899999999999999999889999999999
Q ss_pred ccC
Q psy6781 393 VYD 395 (534)
Q Consensus 393 ~~p 395 (534)
.+|
T Consensus 139 ~~p 141 (141)
T cd01857 139 VFP 141 (141)
T ss_pred CCC
Confidence 876
No 11
>KOG2485|consensus
Probab=99.95 E-value=8.7e-27 Score=235.11 Aligned_cols=262 Identities=26% Similarity=0.354 Sum_probs=192.2
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHh
Q psy6781 221 RDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILS 300 (534)
Q Consensus 221 ~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~ 300 (534)
..|+. |++....+.+.+.+..+|+||+|.|||.|++++++.+++++. .++.||||||+||+++......++++.
T Consensus 26 ~~wfp--gHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~----~k~riiVlNK~DLad~~~~k~~iq~~~ 99 (335)
T KOG2485|consen 26 RRWFP--GHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP----PKPRIIVLNKMDLADPKEQKKIIQYLE 99 (335)
T ss_pred cccCc--hHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC----CCceEEEEecccccCchhhhHHHHHHH
Confidence 34554 357788899999999999999999999999999999999885 489999999999999777777777776
Q ss_pred ccCC-eEEee-eccCCCCChHHHHHHHHHHhh----h-hccccceEEEEEecCCCchhHHHHhhhC-----CCceeeCCC
Q psy6781 301 KEYP-TIAFH-ASMTHPFGKGSIINLLRQFSK----L-HTERKQISVGFIGYPNVGKSSIINALRN-----KKVCKTAPV 368 (534)
Q Consensus 301 ~~~p-~v~f~-~Sa~~~~gi~~Li~~L~~~~~----~-~~~~~~~~v~vvG~pnvGKSSliN~L~~-----~~~~~v~~~ 368 (534)
...- ..++. ++.....++..++..+..+.. . ........|+|+|.||||||||||++.. .+.+.|++.
T Consensus 100 ~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~ 179 (335)
T KOG2485|consen 100 WQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAE 179 (335)
T ss_pred hhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCC
Confidence 5421 11111 111112223444444432221 1 1134678999999999999999999975 477899999
Q ss_pred CCceeeeEE-E--EeCccEEEEeCCCcccCCCCC-cchHHHHHccccccccCCC--chhhHHHHHHhhccceeeehcCCC
Q psy6781 369 PGETKVWQY-I--TLMRRIYLIDCPGVVYDMTNV-ETDTEKVLRGVVRVENIDD--PVQYIDAVLERIKKVHLVKTYGID 442 (534)
Q Consensus 369 pgtTk~~~~-~--~~~~~i~liDtPGi~~p~~~~-~~~~e~vL~gvv~v~~i~~--~~~~i~~iL~r~~k~~l~~~ykId 442 (534)
||+|+..+. + ...+.++++||||+..|+... +....++|.|++....+.. ..||++++|++.........++..
T Consensus 180 pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~~~~y~~~l~~~ 259 (335)
T KOG2485|consen 180 PGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEETIADYLLYLLNSHSDFSYVKDLKPG 259 (335)
T ss_pred CCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHHHHHHHHHHHhccCcchhHHHhccC
Confidence 999997643 3 335679999999999998533 3446788999988776643 258889999998877666666544
Q ss_pred --CCCCHHHHHHHHHHHhCCccc-----cC------cchHHHHHHHHHHHHHcCCCCcc
Q psy6781 443 --EWEDTEDFLKKLAFKWGKIKK-----KG------EPVITASAKMVLNDWQRGKLPYY 488 (534)
Q Consensus 443 --~~~d~~efLe~la~k~g~l~k-----gG------~pD~~~aA~~vL~d~~~Gkl~~~ 488 (534)
...+.+.-+..++.++.+-.+ |. ++.+..+|+.++.-|+.|.++-+
T Consensus 260 ~~~~dd~~~nl~~l~v~~~~~~k~s~fdg~~~~ei~~~~~ln~~e~~l~~~rsg~l~~~ 318 (335)
T KOG2485|consen 260 STPADDIEQNLAVLAVRRTKNEKVSAFDGNNKLEIEQPNLLNLARFFLATFRSGLLGPE 318 (335)
T ss_pred CCccccHHHHHHHHHHHHHhcceeeEecCCceeEEechHHHHHHHHHHHHHHhccccce
Confidence 345677778888887754332 22 24678899999999999999865
No 12
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.94 E-value=5.2e-26 Score=214.76 Aligned_cols=161 Identities=30% Similarity=0.461 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEE
Q psy6781 228 GQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIA 307 (534)
Q Consensus 228 ~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~ 307 (534)
+++++.++++++.++++|+||+|+|++.|+...+..+.+++ .++++|+|+||+||+++.....|.+++..... .+
T Consensus 4 ~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~-~v 78 (171)
T cd01856 4 GHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKGE-KV 78 (171)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcCC-eE
Confidence 46899999999999999999999999999988776665554 35899999999999877666678887765433 35
Q ss_pred eeeccCCCCChHHHHHHHHHHhhhh-------ccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe
Q psy6781 308 FHASMTHPFGKGSIINLLRQFSKLH-------TERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL 380 (534)
Q Consensus 308 f~~Sa~~~~gi~~Li~~L~~~~~~~-------~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~ 380 (534)
+.+|+.++.|+++|.+.|.++++.. .....++++++|.||||||||+|+|.+...+.+++.||+|+..+++.+
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~ 158 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI 158 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe
Confidence 6788999999999999998875311 123457899999999999999999999888899999999999998888
Q ss_pred CccEEEEeCCCcc
Q psy6781 381 MRRIYLIDCPGVV 393 (534)
Q Consensus 381 ~~~i~liDtPGi~ 393 (534)
+..+.++||||+.
T Consensus 159 ~~~~~~iDtpG~~ 171 (171)
T cd01856 159 SPGIYLLDTPGIL 171 (171)
T ss_pred cCCEEEEECCCCC
Confidence 8889999999984
No 13
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.94 E-value=9.4e-26 Score=209.57 Aligned_cols=146 Identities=45% Similarity=0.692 Sum_probs=123.2
Q ss_pred CEEEEEEeCCCCCCCCcHHHH-HHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHH
Q psy6781 245 DVVVYVLDVRDPMGTRCAHIE-NFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIIN 323 (534)
Q Consensus 245 DvVL~VvDAR~Pl~s~~~~le-~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~ 323 (534)
|+||+|+|+++|.++.+..++ .++.. .++|+|+|+||+||++......|+.++...++..++.+|+.++.|++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 899999999999999888777 34443 579999999999999887777888777655555677889999999999998
Q ss_pred HHHHHhhh--------hccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCc
Q psy6781 324 LLRQFSKL--------HTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGV 392 (534)
Q Consensus 324 ~L~~~~~~--------~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi 392 (534)
.|.+.... .......+++++|.||||||||||+|.+...+.+++.||+|+.++++..+..++|+||||+
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 88653211 1123568899999999999999999999988899999999999999988889999999997
No 14
>PRK12289 GTPase RsgA; Reviewed
Probab=99.94 E-value=4.6e-26 Score=238.69 Aligned_cols=203 Identities=19% Similarity=0.224 Sum_probs=154.1
Q ss_pred cccceEEEecCccc-----cccccccCCC----CCCCccCCHHHHHHhh----hcccccccccCceeEEecCCCCcCCCc
Q psy6781 155 KHERVHVLDTESYE-----SVFGKKKQRK----KANLSITNESELAALV----QTSNENYKEEKDFDIVRDNGGVTDAPR 221 (534)
Q Consensus 155 ~~~~~~~~~~e~~~-----~~f~~~~~rk----r~~l~~gd~~~l~~~~----~~~~~~~~~~r~q~l~~Dt~Gi~~~~~ 221 (534)
.++..+.|..+++. ..+.|..+.+ ...+.|||||.+.... ...++++. +|.+.|.+.
T Consensus 16 ~~~~~y~V~~~~~~~~~~~~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vl-pR~~~L~R~--------- 85 (352)
T PRK12289 16 VQANFYRVQLDEPQNLNPPSLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVL-PRKTELDRP--------- 85 (352)
T ss_pred EECCEEEEEECCCcccCcceEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEe-ccccceech---------
Confidence 44556666655432 2456766542 1336899999886321 23466666 666665542
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hCCCCcEEEEEeCCCCCChhhHHHHHHHHh
Q psy6781 222 DWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EKPHKHLFFILNKVDLVPIWVTQRWVAILS 300 (534)
Q Consensus 222 ~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~ 300 (534)
.++|+|+||+|+|+.+|... ...|++||.. +..++|+|||+||+||++......|.+.|.
T Consensus 86 ------------------~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~ 146 (352)
T PRK12289 86 ------------------PVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQ 146 (352)
T ss_pred ------------------hhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHH
Confidence 25699999999999887643 2467888753 557899999999999998777788888775
Q ss_pred ccCCeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC-------cee
Q psy6781 301 KEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG-------ETK 373 (534)
Q Consensus 301 ~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg-------tTk 373 (534)
... ..+|.+|+.++.|++.|++.|.. . .++|+|.||||||||||+|.+.....|+.++| ||+
T Consensus 147 ~~g-~~v~~iSA~tg~GI~eL~~~L~~---------k-i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~ 215 (352)
T PRK12289 147 QWG-YQPLFISVETGIGLEALLEQLRN---------K-ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTR 215 (352)
T ss_pred hcC-CeEEEEEcCCCCCHHHHhhhhcc---------c-eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCc
Confidence 532 23577899999999998888852 2 36899999999999999999999899999999 899
Q ss_pred eeEEEEeCccEEEEeCCCcccCCC
Q psy6781 374 VWQYITLMRRIYLIDCPGVVYDMT 397 (534)
Q Consensus 374 ~~~~~~~~~~i~liDtPGi~~p~~ 397 (534)
+.+++.++.+.+|+|||||..+..
T Consensus 216 ~~~l~~l~~g~~liDTPG~~~~~l 239 (352)
T PRK12289 216 HVELFELPNGGLLADTPGFNQPDL 239 (352)
T ss_pred eeEEEECCCCcEEEeCCCcccccc
Confidence 999999987789999999998874
No 15
>PRK12288 GTPase RsgA; Reviewed
Probab=99.93 E-value=2.5e-25 Score=233.01 Aligned_cols=210 Identities=20% Similarity=0.117 Sum_probs=159.7
Q ss_pred ccccceEEEecCccccccccccCCCCCCCccCCHHHHHHhhh------cccccccccCceeEEecCCCCcCCCchhhhhh
Q psy6781 154 RKHERVHVLDTESYESVFGKKKQRKKANLSITNESELAALVQ------TSNENYKEEKDFDIVRDNGGVTDAPRDWVMAA 227 (534)
Q Consensus 154 ~~~~~~~~~~~e~~~~~f~~~~~rkr~~l~~gd~~~l~~~~~------~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a 227 (534)
+.++..+.|.++.++ .+.|..+++-..++|||||.+..... ..+++++ +|.+.+.|...+- ..++
T Consensus 46 ~~~~~~~~v~~~~g~-~~~~~~~g~~~~~~vGD~V~~~~~~~~~~~~~~~I~~il-~R~n~L~R~~~~~----~~q~--- 116 (347)
T PRK12288 46 SRFGQHADVEAADGE-VHRCNIRRTIRSLVTGDRVVWRPGKEALEGVSGVVEAVH-PRTSVLTRPDYYD----GVKP--- 116 (347)
T ss_pred EEECCEEEEEeCCCc-EEEEEecccCCCCCCCcEEEEEeCCCcccccceEEEEEe-cccceEECCCccc----ccce---
Confidence 345667778777665 56787777665689999999964322 3477777 8888888765421 1123
Q ss_pred hhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hCCCCcEEEEEeCCCCCChh---hHHHHHHHHhccC
Q psy6781 228 GQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EKPHKHLFFILNKVDLVPIW---VTQRWVAILSKEY 303 (534)
Q Consensus 228 ~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~~~k~~IlVLNKiDLv~~~---~~~~wl~~l~~~~ 303 (534)
+++|+|++++|.+.. |..+. ..+++||.. +..++++|||+||+||++.. ....|.+.|...
T Consensus 117 ------------iaANvD~vlIV~s~~-p~~s~-~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~- 181 (347)
T PRK12288 117 ------------IAANIDQIVIVSAVL-PELSL-NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI- 181 (347)
T ss_pred ------------EEEEccEEEEEEeCC-CCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-
Confidence 445999999998875 55544 478888753 55689999999999998754 346677766442
Q ss_pred CeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC-------ceeeeE
Q psy6781 304 PTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG-------ETKVWQ 376 (534)
Q Consensus 304 p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg-------tTk~~~ 376 (534)
...+|.+|+.++.|+++|.+.|.. . .++|+|.||||||||||+|.+.....|+.+++ ||++.+
T Consensus 182 g~~v~~vSA~tg~GideL~~~L~~---------k-i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~ 251 (347)
T PRK12288 182 GYRVLMVSSHTGEGLEELEAALTG---------R-ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAAR 251 (347)
T ss_pred CCeEEEEeCCCCcCHHHHHHHHhh---------C-CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEE
Confidence 234577899999999999988862 2 36899999999999999999999999999987 788999
Q ss_pred EEEeCccEEEEeCCCcccCCC
Q psy6781 377 YITLMRRIYLIDCPGVVYDMT 397 (534)
Q Consensus 377 ~~~~~~~i~liDtPGi~~p~~ 397 (534)
++.++.+.+|||||||..-..
T Consensus 252 l~~l~~~~~liDTPGir~~~l 272 (347)
T PRK12288 252 LYHFPHGGDLIDSPGVREFGL 272 (347)
T ss_pred EEEecCCCEEEECCCCCcccC
Confidence 999988889999999987653
No 16
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.93 E-value=1.6e-24 Score=200.76 Aligned_cols=155 Identities=40% Similarity=0.638 Sum_probs=126.6
Q ss_pred HHHHHHHHhh-hcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeec
Q psy6781 233 IWGELYKVID-SSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHAS 311 (534)
Q Consensus 233 ~~~el~kvI~-nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~S 311 (534)
||+++.+.+. ++|+||+|+|+++|....+..+.+++.. .++|+|+|+||+||++......|..+... ....++.+|
T Consensus 1 ~~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~iS 77 (156)
T cd01859 1 MWKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKES-EGIPVVYVS 77 (156)
T ss_pred CHHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHh-CCCcEEEEE
Confidence 4777776555 5999999999999988877777776643 47999999999999876555566533322 223357789
Q ss_pred cCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCC
Q psy6781 312 MTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPG 391 (534)
Q Consensus 312 a~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPG 391 (534)
+.++.|++.|.+.|.++++.. ....+++++|+|||||||++|+|.+.....+++.+|+|++.+++..+..++|+||||
T Consensus 78 a~~~~gi~~L~~~l~~~~~~~--~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 78 AKERLGTKILRRTIKELAKID--GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred ccccccHHHHHHHHHHHHhhc--CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 999999999999999887632 345778999999999999999999988888999999999999888888999999999
Q ss_pred c
Q psy6781 392 V 392 (534)
Q Consensus 392 i 392 (534)
+
T Consensus 156 i 156 (156)
T cd01859 156 V 156 (156)
T ss_pred C
Confidence 7
No 17
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=227.93 Aligned_cols=244 Identities=26% Similarity=0.335 Sum_probs=180.1
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLV 287 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv 287 (534)
..++||+|+.....+ ++.++|.+++..+++.||+||+|+|++..++..+..+.++|+. .++|+|+|+||+|-.
T Consensus 53 f~lIDTgGl~~~~~~-----~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~ 125 (444)
T COG1160 53 FILIDTGGLDDGDED-----ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNL 125 (444)
T ss_pred EEEEECCCCCcCCch-----HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCc
Confidence 678999999755432 4788999999999999999999999999899999999999984 579999999999976
Q ss_pred ChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh-hh-cc----ccceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 288 PIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK-LH-TE----RKQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 288 ~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~-~~-~~----~~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
..+ ....++|+-++ ...+.+||.|+.|++.|++.+.+.++ .. .. ...++|++||.||||||||+|+|+++.
T Consensus 126 ~~e--~~~~efyslG~-g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgee 202 (444)
T COG1160 126 KAE--ELAYEFYSLGF-GEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEE 202 (444)
T ss_pred hhh--hhHHHHHhcCC-CCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCc
Confidence 322 22333444333 34577899999999999999998874 11 11 146999999999999999999999999
Q ss_pred ceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCCCc-------ch-------HHHHHccccccccCCCchhhHH
Q psy6781 362 VCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTNVE-------TD-------TEKVLRGVVRVENIDDPVQYID 424 (534)
Q Consensus 362 ~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~~~-------~~-------~e~vL~gvv~v~~i~~~~~~i~ 424 (534)
.+.+++.||||++...+.+ +..+.||||.|+.....-.+ .. ++.++..+...+.+.+.+.-+.
T Consensus 203 R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia 282 (444)
T COG1160 203 RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIA 282 (444)
T ss_pred eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHH
Confidence 9999999999998754433 56899999999986541111 01 1112222223334444555667
Q ss_pred HHHHhhccceeeehcCCCCCCC----HHHHHHHHHHHhCCc
Q psy6781 425 AVLERIKKVHLVKTYGIDEWED----TEDFLKKLAFKWGKI 461 (534)
Q Consensus 425 ~iL~r~~k~~l~~~ykId~~~d----~~efLe~la~k~g~l 461 (534)
.+.....+..+.++||-|.... .+++-+.+.++..++
T Consensus 283 ~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l 323 (444)
T COG1160 283 GLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL 323 (444)
T ss_pred HHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc
Confidence 7777788888889999886553 234455556655554
No 18
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.91 E-value=3.9e-24 Score=218.75 Aligned_cols=208 Identities=18% Similarity=0.124 Sum_probs=155.0
Q ss_pred cccceEEEecCccccccccccCCCC----CCCccCCHHHHHHhh--hcccccccccCceeEEecCCCCcCCCchhhhhhh
Q psy6781 155 KHERVHVLDTESYESVFGKKKQRKK----ANLSITNESELAALV--QTSNENYKEEKDFDIVRDNGGVTDAPRDWVMAAG 228 (534)
Q Consensus 155 ~~~~~~~~~~e~~~~~f~~~~~rkr----~~l~~gd~~~l~~~~--~~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~ 228 (534)
.++..+.+.++. ..+.|+.+++- ..++|||||++.... ...++++. +|.+.+.|..+|.. .+
T Consensus 6 ~~~~~~~v~~~~--~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~i~~i~-~R~~~l~R~~~~~~----~~----- 73 (287)
T cd01854 6 VHGGFYDVETEG--GELRCRARGKLRKKGIKPVVGDWVEVEPDDDGEGVIVRVL-PRKNLLSRPAAGGR----EQ----- 73 (287)
T ss_pred EECCEEEEEECC--eEEEEEeccccccCCCCccCCCEEEEEecCCCcEEEEEEE-CCCceEEccCCCCc----ce-----
Confidence 345667776652 25677766543 357899999986533 23477787 89999999877732 12
Q ss_pred hHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEE
Q psy6781 229 QSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIA 307 (534)
Q Consensus 229 lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~ 307 (534)
.+++++|++|+|+|+++|..+ ...+++|+.. +..++|+|+|+||+||+++.....|...+... ...+
T Consensus 74 ----------~i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-g~~v 141 (287)
T cd01854 74 ----------VIAANVDQLVIVVSLNEPFFN-PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALAL-GYPV 141 (287)
T ss_pred ----------eEEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhC-CCeE
Confidence 245699999999999999833 2477888753 45689999999999998765545566655432 2245
Q ss_pred eeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCC-------CceeeeEEEEe
Q psy6781 308 FHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVP-------GETKVWQYITL 380 (534)
Q Consensus 308 f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~p-------gtTk~~~~~~~ 380 (534)
+.+|+.++.|++.|...|. ...++++|.+|||||||||+|.+.....++.++ +||++.+++.+
T Consensus 142 ~~vSA~~g~gi~~L~~~L~----------~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~ 211 (287)
T cd01854 142 LAVSAKTGEGLDELREYLK----------GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPL 211 (287)
T ss_pred EEEECCCCccHHHHHhhhc----------cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEc
Confidence 6679999999998888775 246899999999999999999998766666554 37888889988
Q ss_pred CccEEEEeCCCcccCC
Q psy6781 381 MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 381 ~~~i~liDtPGi~~p~ 396 (534)
....+|+||||+....
T Consensus 212 ~~~~~liDtPG~~~~~ 227 (287)
T cd01854 212 PGGGLLIDTPGFREFG 227 (287)
T ss_pred CCCCEEEECCCCCccC
Confidence 8778999999997544
No 19
>PRK00098 GTPase RsgA; Reviewed
Probab=99.91 E-value=7.3e-24 Score=217.83 Aligned_cols=208 Identities=20% Similarity=0.180 Sum_probs=153.3
Q ss_pred cccceEEEecCccccccccccCCCC----CCCccCCHHHHHHhh--hcccccccccCceeEEecCCCCcCCCchhhhhhh
Q psy6781 155 KHERVHVLDTESYESVFGKKKQRKK----ANLSITNESELAALV--QTSNENYKEEKDFDIVRDNGGVTDAPRDWVMAAG 228 (534)
Q Consensus 155 ~~~~~~~~~~e~~~~~f~~~~~rkr----~~l~~gd~~~l~~~~--~~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~ 228 (534)
.++..+.|.++.+. .+.|+.+++- ..++|||||.+.... ...++++. +|.+.+.+...+ ...
T Consensus 8 ~~~~~~~v~~~~~~-~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~g~i~~i~-~R~~~l~R~~~~-----~~q----- 75 (298)
T PRK00098 8 ALGGFYYVESEDGQ-VYQCRARGKFRKKTNTPAVGDRVEFSAENNDEGVILEIH-ERKNLLVRPPIF-----KSK----- 75 (298)
T ss_pred EECCEEEEEECCCC-EEEEEeccccccCCCCcCCCCEEEEEECCCCcEEEEEEe-CCCceEECCCCc-----ccc-----
Confidence 34566777665443 5667666542 337899999886422 23366676 788888776541 111
Q ss_pred hHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hCCCCcEEEEEeCCCCCC-hhhHHHHHHHHhccCCeE
Q psy6781 229 QSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EKPHKHLFFILNKVDLVP-IWVTQRWVAILSKEYPTI 306 (534)
Q Consensus 229 lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~~~k~~IlVLNKiDLv~-~~~~~~wl~~l~~~~p~v 306 (534)
.+++++|++|+|+|+.+|.... ..+++++.. ...++|+++|+||+||++ ......|.+.+... ...
T Consensus 76 ----------~iaaniD~vllV~d~~~p~~~~-~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~-g~~ 143 (298)
T PRK00098 76 ----------LIAANVDQAVLVFAAKEPDFST-DLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAI-GYD 143 (298)
T ss_pred ----------ceeecCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-CCe
Confidence 2466999999999999886654 356777642 446899999999999974 34455677766542 224
Q ss_pred EeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC-------ceeeeEEEE
Q psy6781 307 AFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG-------ETKVWQYIT 379 (534)
Q Consensus 307 ~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg-------tTk~~~~~~ 379 (534)
+|.+|+.++.|++.|.+.|. +..++|+|.||||||||||+|.+.....++.+++ ||++.+++.
T Consensus 144 v~~vSA~~g~gi~~L~~~l~----------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~ 213 (298)
T PRK00098 144 VLELSAKEGEGLDELKPLLA----------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD 213 (298)
T ss_pred EEEEeCCCCccHHHHHhhcc----------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE
Confidence 57789999999998888774 4467899999999999999999988778888876 788888988
Q ss_pred eCccEEEEeCCCcccCC
Q psy6781 380 LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 380 ~~~~i~liDtPGi~~p~ 396 (534)
++...+|+||||+....
T Consensus 214 ~~~~~~~~DtpG~~~~~ 230 (298)
T PRK00098 214 LPGGGLLIDTPGFSSFG 230 (298)
T ss_pred cCCCcEEEECCCcCccC
Confidence 88888999999998544
No 20
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.91 E-value=7.9e-24 Score=211.89 Aligned_cols=175 Identities=20% Similarity=0.193 Sum_probs=133.5
Q ss_pred CccCCHHHHHHhh--hcccccccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC
Q psy6781 182 LSITNESELAALV--QTSNENYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT 259 (534)
Q Consensus 182 l~~gd~~~l~~~~--~~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s 259 (534)
++|||||.+.... ...++++. +|.+.+.+. .++++|++++|.|+++|..+
T Consensus 1 ~~vGD~V~~~~~~~~~~~i~~i~-eR~~~L~r~---------------------------~~~n~D~viiV~d~~~p~~s 52 (245)
T TIGR00157 1 LVVGDRVVWEPGNVVKVYGGAIA-ERKNELTRP---------------------------IVANIDQIVIVSSAVLPELS 52 (245)
T ss_pred CCCCcEEEEEecCCCceEEEEEe-cccceEECc---------------------------ccccCCEEEEEEECCCCCCC
Confidence 3689999886432 12355555 555444331 35599999999999999876
Q ss_pred CcHHHHHHHHh-hCCCCcEEEEEeCCCCCChhhH-HHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhccccc
Q psy6781 260 RCAHIENFLRR-EKPHKHLFFILNKVDLVPIWVT-QRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQ 337 (534)
Q Consensus 260 ~~~~le~~L~~-~~~~k~~IlVLNKiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~ 337 (534)
.. .+++|+.. +..++++|||+||+||.+.... ..|.+.|.+. ...+|.+|++++.|+++|.+.|. .
T Consensus 53 ~~-~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~-g~~v~~~SAktg~gi~eLf~~l~----------~ 120 (245)
T TIGR00157 53 LN-QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNI-GYQVLMTSSKNQDGLKELIEALQ----------N 120 (245)
T ss_pred HH-HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHC-CCeEEEEecCCchhHHHHHhhhc----------C
Confidence 53 67888753 4468999999999999865433 4677777652 23467789999999999888775 2
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCC-------ceeeeEEEEeCccEEEEeCCCcccCCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG-------ETKVWQYITLMRRIYLIDCPGVVYDMT 397 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg-------tTk~~~~~~~~~~i~liDtPGi~~p~~ 397 (534)
..++|+|.||||||||||+|.+.....++.+++ ||++.+++.+ .+.+|+||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccCC
Confidence 356899999999999999999988778777765 8899999988 5779999999998774
No 21
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.90 E-value=1.9e-23 Score=200.06 Aligned_cols=151 Identities=29% Similarity=0.388 Sum_probs=117.3
Q ss_pred HHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhh----HHHHHHHH--hc-cC-C
Q psy6781 233 IWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWV----TQRWVAIL--SK-EY-P 304 (534)
Q Consensus 233 ~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~----~~~wl~~l--~~-~~-p 304 (534)
+...+...+.++|+||+|+|++++.......+.. ...++|+|+|+||+||++... ...|.+.+ .. .+ .
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~----~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL----FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHH----hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 4556667788999999999999987766555521 224689999999999986432 33454111 11 11 1
Q ss_pred eEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCc--------eeeCCCCCceeeeE
Q psy6781 305 TIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKV--------CKTAPVPGETKVWQ 376 (534)
Q Consensus 305 ~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~--------~~v~~~pgtTk~~~ 376 (534)
..+|.+|++++.|+++|++.|.++++ ...+++++|.||||||||||+|.+... ..++..||||++.+
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~-----~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~ 174 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAK-----KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLI 174 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhh-----cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeE
Confidence 24677899999999999999988765 346799999999999999999998543 46789999999999
Q ss_pred EEEeCccEEEEeCCCc
Q psy6781 377 YITLMRRIYLIDCPGV 392 (534)
Q Consensus 377 ~~~~~~~i~liDtPGi 392 (534)
.+.++..+.|+||||+
T Consensus 175 ~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 175 KIPLGNGKKLYDTPGI 190 (190)
T ss_pred EEecCCCCEEEeCcCC
Confidence 9998878999999997
No 22
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=3.8e-22 Score=202.82 Aligned_cols=188 Identities=20% Similarity=0.207 Sum_probs=145.7
Q ss_pred cccccc----CCCCCCCccCCHHHHHHhhh-cccccccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhc
Q psy6781 170 VFGKKK----QRKKANLSITNESELAALVQ-TSNENYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSS 244 (534)
Q Consensus 170 ~f~~~~----~rkr~~l~~gd~~~l~~~~~-~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~ns 244 (534)
.++|+. +++...+.|||+|.+..... ..++++. +|.+.+.|..- .|+
T Consensus 29 ~~~~~~r~~lr~~~~~~vVGD~V~~~~~~~~g~I~~i~-~Rkn~L~Rp~v---------------------------~n~ 80 (301)
T COG1162 29 VYRCRARGNLRKKDLKPVVGDRVVFEDENNNGVIEKIL-PRKNVLIRPPV---------------------------ANN 80 (301)
T ss_pred eeeeeeecceeccCccccccCeEEEecCCCcceEEEEe-cccCceeCCcc---------------------------ccc
Confidence 455655 45567778999999976543 3466776 77777766532 268
Q ss_pred CEEEEEEeCCCCCCCCcHHHHHHHH-hhCCCCcEEEEEeCCCCCChhhHH--HHHHHHhccCCeEEeeeccCCCCChHHH
Q psy6781 245 DVVVYVLDVRDPMGTRCAHIENFLR-REKPHKHLFFILNKVDLVPIWVTQ--RWVAILSKEYPTIAFHASMTHPFGKGSI 321 (534)
Q Consensus 245 DvVL~VvDAR~Pl~s~~~~le~~L~-~~~~~k~~IlVLNKiDLv~~~~~~--~wl~~l~~~~p~v~f~~Sa~~~~gi~~L 321 (534)
|.+++|+.+-+|..+. ..|++||. .+..++.+||||||+||++..... .+...|.. ....++.+|++++.|.++|
T Consensus 81 d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~-~gy~v~~~s~~~~~~~~~l 158 (301)
T COG1162 81 DQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYED-IGYPVLFVSAKNGDGLEEL 158 (301)
T ss_pred ceEEEEEeccCCCCCH-HHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHh-CCeeEEEecCcCcccHHHH
Confidence 8999999999998876 48999975 478899999999999999876554 45555543 2233456788888999998
Q ss_pred HHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC-------ceeeeEEEEeCccEEEEeCCCccc
Q psy6781 322 INLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG-------ETKVWQYITLMRRIYLIDCPGVVY 394 (534)
Q Consensus 322 i~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg-------tTk~~~~~~~~~~i~liDtPGi~~ 394 (534)
.++|. +.++ +|+|.+|||||||||+|.+.....|+.+.+ ||++..++.++.+.+|||||||..
T Consensus 159 ~~~l~---------~~~s-vl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~ 228 (301)
T COG1162 159 AELLA---------GKIT-VLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRS 228 (301)
T ss_pred HHHhc---------CCeE-EEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCc
Confidence 88886 4544 699999999999999999977777777653 788999999999999999999987
Q ss_pred CCC
Q psy6781 395 DMT 397 (534)
Q Consensus 395 p~~ 397 (534)
...
T Consensus 229 ~~l 231 (301)
T COG1162 229 LGL 231 (301)
T ss_pred cCc
Confidence 764
No 23
>PRK13796 GTPase YqeH; Provisional
Probab=99.87 E-value=1.8e-21 Score=205.49 Aligned_cols=151 Identities=28% Similarity=0.422 Sum_probs=121.1
Q ss_pred HHHHHhhhcC-EEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCCh----hhHHHHHHHHhccC---CeEE
Q psy6781 236 ELYKVIDSSD-VVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPI----WVTQRWVAILSKEY---PTIA 307 (534)
Q Consensus 236 el~kvI~nsD-vVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~----~~~~~wl~~l~~~~---p~v~ 307 (534)
++.+.+...| +|++|+|+.++.++..+.+.+++. ++++++|+||+||++. .....|+..+.+.. +..+
T Consensus 61 ~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~----~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v 136 (365)
T PRK13796 61 KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG----NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDV 136 (365)
T ss_pred HHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC----CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcE
Confidence 3445556666 999999999988888777777653 6899999999999864 24566877665432 2246
Q ss_pred eeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCC-----CceeeCCCCCceeeeEEEEeCc
Q psy6781 308 FHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNK-----KVCKTAPVPGETKVWQYITLMR 382 (534)
Q Consensus 308 f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~-----~~~~v~~~pgtTk~~~~~~~~~ 382 (534)
+.+|++++.|+++|++.|.++.. +..+++||.||||||||||+|.+. ..+.++..||||++.+.+.++.
T Consensus 137 ~~vSAk~g~gI~eL~~~I~~~~~------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~ 210 (365)
T PRK13796 137 VLISAQKGHGIDELLEAIEKYRE------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD 210 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC
Confidence 77899999999999999977532 457899999999999999999854 3567899999999999999988
Q ss_pred cEEEEeCCCcccCC
Q psy6781 383 RIYLIDCPGVVYDM 396 (534)
Q Consensus 383 ~i~liDtPGi~~p~ 396 (534)
+..|+||||+..+.
T Consensus 211 ~~~l~DTPGi~~~~ 224 (365)
T PRK13796 211 GSFLYDTPGIIHRH 224 (365)
T ss_pred CcEEEECCCccccc
Confidence 89999999997543
No 24
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.4e-20 Score=201.55 Aligned_cols=241 Identities=24% Similarity=0.329 Sum_probs=164.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||+..... .+...+.+++...+..+|+||+|+|++.++...+..+.++++. .++|+|+|+||+|+
T Consensus 48 ~~~liDTpG~~~~~~------~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~ 119 (429)
T TIGR03594 48 EFILIDTGGIEEDDD------GLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDG 119 (429)
T ss_pred EEEEEECCCCCCcch------hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccC
Confidence 466889999854322 3567788888999999999999999999888777778888875 57999999999999
Q ss_pred CChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhc-----cccceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 287 VPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHT-----ERKQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 287 v~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~-----~~~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
....... .+.+.-.+ ...|.+|+.++.|+++|++.+.+.++... ....++|+++|.||||||||+|+|++..
T Consensus 120 ~~~~~~~--~~~~~lg~-~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~ 196 (429)
T TIGR03594 120 KKEDAVA--AEFYSLGF-GEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE 196 (429)
T ss_pred CcccccH--HHHHhcCC-CCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC
Confidence 7654221 12222222 23578899999999999999887764321 1345899999999999999999999988
Q ss_pred ceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCCCCCcc-h------HHHHHccc------cc-cccCCCchhhHH
Q psy6781 362 VCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDMTNVET-D------TEKVLRGV------VR-VENIDDPVQYID 424 (534)
Q Consensus 362 ~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~~~~~~-~------~e~vL~gv------v~-v~~i~~~~~~i~ 424 (534)
.+.+++.||+|++..... .+..+.|+||||+.......+. + ....+..+ +. .+.+...+..+.
T Consensus 197 ~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~ 276 (429)
T TIGR03594 197 RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIA 276 (429)
T ss_pred eeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHH
Confidence 888999999998754332 2457999999999754411100 0 01122221 11 111222223344
Q ss_pred HHHHhhccceeeehcCCCCCCCH---HHHHHHHHHHh
Q psy6781 425 AVLERIKKVHLVKTYGIDEWEDT---EDFLKKLAFKW 458 (534)
Q Consensus 425 ~iL~r~~k~~l~~~ykId~~~d~---~efLe~la~k~ 458 (534)
..+.....+.+.+.||+|...+. +++...+....
T Consensus 277 ~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 277 GLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKL 313 (429)
T ss_pred HHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhc
Confidence 44455567888999999976332 24444454443
No 25
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.86 E-value=6.2e-21 Score=201.01 Aligned_cols=152 Identities=28% Similarity=0.413 Sum_probs=122.9
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChh----hHHHHHHHHhccCC---eEE
Q psy6781 235 GELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIW----VTQRWVAILSKEYP---TIA 307 (534)
Q Consensus 235 ~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~----~~~~wl~~l~~~~p---~v~ 307 (534)
+.+......+|+|++|+|+.++.++..+.+.+++. ++++++|+||+||++.. ....|+..+.+.+. ..+
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~----~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG----GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC----CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 34445567889999999999999888888887763 58999999999998653 45667654333221 236
Q ss_pred eeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCC-----CceeeCCCCCceeeeEEEEeCc
Q psy6781 308 FHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNK-----KVCKTAPVPGETKVWQYITLMR 382 (534)
Q Consensus 308 f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~-----~~~~v~~~pgtTk~~~~~~~~~ 382 (534)
+.+|++++.|+++|++.|.++. .+..|++||.||||||||||+|++. ..+.++..||+|+..+.+.++.
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~------~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~ 204 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKAR------NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD 204 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHh------CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC
Confidence 6789999999999999998653 2468999999999999999999985 3478999999999999998888
Q ss_pred cEEEEeCCCcccCC
Q psy6781 383 RIYLIDCPGVVYDM 396 (534)
Q Consensus 383 ~i~liDtPGi~~p~ 396 (534)
++.|+||||+..+.
T Consensus 205 ~~~l~DtPG~~~~~ 218 (360)
T TIGR03597 205 GHSLYDTPGIINSH 218 (360)
T ss_pred CCEEEECCCCCChh
Confidence 89999999998654
No 26
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=4.3e-20 Score=198.38 Aligned_cols=240 Identities=24% Similarity=0.298 Sum_probs=160.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||+..... .....+..++...+..+|+||+|+|++.+....+..+.+++.. .++|+|+|+||+|
T Consensus 49 ~~~~liDT~G~~~~~~------~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D 120 (435)
T PRK00093 49 REFILIDTGGIEPDDD------GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVD 120 (435)
T ss_pred cEEEEEECCCCCCcch------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECcc
Confidence 4567899999865221 1345566777788999999999999999877776677777775 4799999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhc----cccceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHT----ERKQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~----~~~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+...+. ...+.+.-... ..+.+|+.++.|++.|++.+.+...... ....++|+++|.||||||||+|+|++..
T Consensus 121 ~~~~~~--~~~~~~~lg~~-~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 121 GPDEEA--DAYEFYSLGLG-EPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred Cccchh--hHHHHHhcCCC-CCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 865321 11222222222 2467899999999999988876433211 2357999999999999999999999998
Q ss_pred ceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCCCCCcchHH--------HHHccc------ccc-ccCCCchhhH
Q psy6781 362 VCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDMTNVETDTE--------KVLRGV------VRV-ENIDDPVQYI 423 (534)
Q Consensus 362 ~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~~~~~~~~e--------~vL~gv------v~v-~~i~~~~~~i 423 (534)
.+.+++.||+|++..... .+..+.|+||||+........ ..+ ..+..+ +.+ +.+...+..+
T Consensus 198 ~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i 276 (435)
T PRK00093 198 RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTE-GVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRI 276 (435)
T ss_pred ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhh-HHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH
Confidence 889999999999865332 245799999999976542111 111 112111 111 1122222334
Q ss_pred HHHHHhhccceeeehcCCCCCCC--HHHHHHHHHHH
Q psy6781 424 DAVLERIKKVHLVKTYGIDEWED--TEDFLKKLAFK 457 (534)
Q Consensus 424 ~~iL~r~~k~~l~~~ykId~~~d--~~efLe~la~k 457 (534)
...+....++.+...||+|.... ..++.+.++..
T Consensus 277 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~ 312 (435)
T PRK00093 277 AGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRR 312 (435)
T ss_pred HHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHh
Confidence 44555556788899999997632 22344444443
No 27
>PRK01889 GTPase RsgA; Reviewed
Probab=99.84 E-value=5.4e-21 Score=201.16 Aligned_cols=209 Identities=22% Similarity=0.182 Sum_probs=148.5
Q ss_pred cccceEEEecCccccccccccCCC--------CCCCccCCHHHHHHhhhcccccccccCceeEEecCCCCcCCCchhhhh
Q psy6781 155 KHERVHVLDTESYESVFGKKKQRK--------KANLSITNESELAALVQTSNENYKEEKDFDIVRDNGGVTDAPRDWVMA 226 (534)
Q Consensus 155 ~~~~~~~~~~e~~~~~f~~~~~rk--------r~~l~~gd~~~l~~~~~~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~ 226 (534)
.++..+.|.++.+. +-|..++| +...+|||||.+.......++++. +|.+.+.+...|- ....++++
T Consensus 36 ~~~~~~~v~~~~~~--~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~~~~g~I~~i~-pR~~~L~R~~~~~--~~~~q~ia 110 (356)
T PRK01889 36 EHRSGYVVATEEGE--VRAEVSGKWRHEAFPPGDRPAVGDWVLLDNEKKARIVRLL-PRRSLFSRKAAGT--RSEEQLIA 110 (356)
T ss_pred EECCEEEEEECCcE--EEEEecchhhccccccCCCCccCcEEEEecCCceEEEEEE-CCCceEEcCCCCC--CccceeEE
Confidence 45666777665543 44544432 345789999988642223466776 8889998877663 22333444
Q ss_pred hhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hCCCCcEEEEEeCCCCCChh-hHHHHHHHHhccCC
Q psy6781 227 AGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EKPHKHLFFILNKVDLVPIW-VTQRWVAILSKEYP 304 (534)
Q Consensus 227 a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~~~k~~IlVLNKiDLv~~~-~~~~wl~~l~~~~p 304 (534)
+|+|+|++|+++. |... ...+++||.. +..+++++|||||+||+++. ....|+..+...++
T Consensus 111 ---------------ANvD~vliV~s~~-p~~~-~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~ 173 (356)
T PRK01889 111 ---------------ANVDTVFIVCSLN-HDFN-LRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVP 173 (356)
T ss_pred ---------------EeCCEEEEEEecC-CCCC-hhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCc
Confidence 4999999999996 5333 2488999754 66789999999999999752 23344444433343
Q ss_pred eEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCC-------CceeeeEE
Q psy6781 305 TIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVP-------GETKVWQY 377 (534)
Q Consensus 305 ~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~p-------gtTk~~~~ 377 (534)
+|.+|+.++.|++.|.+.|. .+-+++|+|.||+|||||+|+|.+.....++.++ .+|+..++
T Consensus 174 --Vi~vSa~~g~gl~~L~~~L~---------~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l 242 (356)
T PRK01889 174 --VLAVSALDGEGLDVLAAWLS---------GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHREL 242 (356)
T ss_pred --EEEEECCCCccHHHHHHHhh---------cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccE
Confidence 46678899999999888885 3557899999999999999999987665555543 25666677
Q ss_pred EEeCccEEEEeCCCcccCC
Q psy6781 378 ITLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 378 ~~~~~~i~liDtPGi~~p~ 396 (534)
+.+..+.+++||||+..+.
T Consensus 243 ~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 243 HPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred EEecCCCeecCCCchhhhc
Confidence 7777788999999997655
No 28
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=9.6e-20 Score=198.34 Aligned_cols=177 Identities=23% Similarity=0.209 Sum_probs=132.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||+..... .+...+..++...+..+|+||+|+|++++....+..+.+++.. .++|+|+|+||+|+
T Consensus 87 ~~~l~DT~G~~~~~~------~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl 158 (472)
T PRK03003 87 RFTVVDTGGWEPDAK------GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDD 158 (472)
T ss_pred EEEEEeCCCcCCcch------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccC
Confidence 456789999753222 3455677777888999999999999998877666667677764 57999999999999
Q ss_pred CChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhc-----cccceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 287 VPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHT-----ERKQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 287 v~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~-----~~~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
..... ...+.+...+. ..|.+||.++.|+++|++.|.+.++... ....++|+++|.||||||||+|+|++..
T Consensus 159 ~~~~~--~~~~~~~~g~~-~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~ 235 (472)
T PRK03003 159 ERGEA--DAAALWSLGLG-EPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEE 235 (472)
T ss_pred Cccch--hhHHHHhcCCC-CeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 64321 11222222222 2367899999999999998887654321 1246899999999999999999999988
Q ss_pred ceeeCCCCCceeeeEE--E-EeCccEEEEeCCCccc
Q psy6781 362 VCKTAPVPGETKVWQY--I-TLMRRIYLIDCPGVVY 394 (534)
Q Consensus 362 ~~~v~~~pgtTk~~~~--~-~~~~~i~liDtPGi~~ 394 (534)
.+.+++.||+|++... + .-+..+.|+||||+..
T Consensus 236 ~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 236 RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred cccccCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 7788999999987532 2 2245688999999853
No 29
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=2.7e-19 Score=203.68 Aligned_cols=178 Identities=22% Similarity=0.222 Sum_probs=134.3
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||+..... .+...+.+++...+..+|+||+|+|++..+...+..+.+++.. .++|+|+|+||+|+
T Consensus 324 ~~~liDT~G~~~~~~------~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~ 395 (712)
T PRK09518 324 DFKLVDTGGWEADVE------GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDD 395 (712)
T ss_pred EEEEEeCCCcCCCCc------cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECccc
Confidence 456789999764322 3566778888889999999999999998777666667777764 58999999999999
Q ss_pred CChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhc-------cccceEEEEEecCCCchhHHHHhhhC
Q psy6781 287 VPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHT-------ERKQISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 287 v~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~-------~~~~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
...... ..+.+...+. ..|.+||.++.|+++|++.|.+.++... ....++|+++|.||||||||+|+|++
T Consensus 396 ~~~~~~--~~~~~~lg~~-~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~ 472 (712)
T PRK09518 396 QASEYD--AAEFWKLGLG-EPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTH 472 (712)
T ss_pred ccchhh--HHHHHHcCCC-CeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 653211 1222222333 2467899999999999998887664321 12358999999999999999999999
Q ss_pred CCceeeCCCCCceeeeEEE---EeCccEEEEeCCCcccC
Q psy6781 360 KKVCKTAPVPGETKVWQYI---TLMRRIYLIDCPGVVYD 395 (534)
Q Consensus 360 ~~~~~v~~~pgtTk~~~~~---~~~~~i~liDtPGi~~p 395 (534)
.....+++.||+|++.... .-+..+.|+||||+...
T Consensus 473 ~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~ 511 (712)
T PRK09518 473 EERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRR 511 (712)
T ss_pred ccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccC
Confidence 9877889999999876422 23457889999998643
No 30
>COG1159 Era GTPase [General function prediction only]
Probab=99.57 E-value=3.9e-15 Score=150.76 Aligned_cols=118 Identities=28% Similarity=0.327 Sum_probs=86.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE---EEEeCccEEEEeCCCcccCCCCC-----------cchH
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ---YITLMRRIYLIDCPGVVYDMTNV-----------ETDT 403 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~---~~~~~~~i~liDtPGi~~p~~~~-----------~~~~ 403 (534)
-.|++||.||||||||+|+|+|.+++.||+.|.||++.. +..-+.++.|+||||+..|.... -.++
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccC
Confidence 457899999999999999999999999999999999853 22335699999999999987321 1122
Q ss_pred HHHHccccccccCCCchhhHHHHHHhhccceeeehcCCCCCCCHHHHHHHHH
Q psy6781 404 EKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLA 455 (534)
Q Consensus 404 e~vL~gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~~efLe~la 455 (534)
+++|..+...+.+...+..+...|.....+.+..+||||...+...++..++
T Consensus 87 Dlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~ 138 (298)
T COG1159 87 DLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIA 138 (298)
T ss_pred cEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHH
Confidence 2333333333335555677777777766788999999998877664443333
No 31
>COG1159 Era GTPase [General function prediction only]
Probab=99.51 E-value=1.7e-13 Score=138.88 Aligned_cols=124 Identities=15% Similarity=0.234 Sum_probs=107.7
Q ss_pred ccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEE
Q psy6781 201 YKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFI 280 (534)
Q Consensus 201 ~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlV 280 (534)
|..+..|++|.||||+|.+.+ .+++.|.+.+++.+..+|+|++|+|+..+++..+..+.+.|+. .+.|+|++
T Consensus 49 ~t~~~~QiIfvDTPGih~pk~------~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~ 120 (298)
T COG1159 49 VTTDNAQIIFVDTPGIHKPKH------ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILV 120 (298)
T ss_pred EEcCCceEEEEeCCCCCCcch------HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEE
Confidence 455688999999999998855 6899999999999999999999999999999988888888875 46899999
Q ss_pred EeCCCCCChhh-HHHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHHhhhh
Q psy6781 281 LNKVDLVPIWV-TQRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQFSKLH 332 (534)
Q Consensus 281 LNKiDLv~~~~-~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~~~ 332 (534)
+||+|++++.. +....+.+....+ ..+|++||+++.+++.|++.+..+++..
T Consensus 121 iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 121 VNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred EEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence 99999998776 5677777776655 4678999999999999999999988753
No 32
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=7.9e-14 Score=148.18 Aligned_cols=108 Identities=30% Similarity=0.354 Sum_probs=82.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCCCCC--cc---hHHH----
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDMTNV--ET---DTEK---- 405 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~~~~--~~---~~e~---- 405 (534)
..|++||.||||||||+|+|+++..+.|++.||+|++..+.. .+..+.||||+|+.....+. .. ++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999987643 36689999999998644111 01 1122
Q ss_pred ---HHccccccccCCCchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 406 ---VLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 406 ---vL~gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
+|..+..-+.+.+.++.+..+|.+..++.+++.||+|...
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK 126 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch
Confidence 2222333344666678888999988899999999999763
No 33
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.42 E-value=2.5e-13 Score=127.47 Aligned_cols=102 Identities=30% Similarity=0.405 Sum_probs=67.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCCCCCcchHHHHHcc-----
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDMTNVETDTEKVLRG----- 409 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~~~~~~~~e~vL~g----- 409 (534)
|+|+++|.||||||||||+|+|.+ ..+++.||+|....... .+..+.|+|+||++... ..+..+.+.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~--~~s~ee~v~~~~l~~~ 77 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLS--SKSEEERVARDYLLSE 77 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSS--SSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCC--CCCcHHHHHHHHHhhc
Confidence 579999999999999999999999 68999999999865433 35689999999998765 33333332221
Q ss_pred -------ccccccCCCchhhHHHHHHhhccceeeehcCCCC
Q psy6781 410 -------VVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDE 443 (534)
Q Consensus 410 -------vv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~ 443 (534)
++....+. -..++...|.....+.+...|++|.
T Consensus 78 ~~D~ii~VvDa~~l~-r~l~l~~ql~e~g~P~vvvlN~~D~ 117 (156)
T PF02421_consen 78 KPDLIIVVVDATNLE-RNLYLTLQLLELGIPVVVVLNKMDE 117 (156)
T ss_dssp SSSEEEEEEEGGGHH-HHHHHHHHHHHTTSSEEEEEETHHH
T ss_pred CCCEEEEECCCCCHH-HHHHHHHHHHHcCCCEEEEEeCHHH
Confidence 22222221 1234444556677888999998774
No 34
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.37 E-value=1.8e-12 Score=122.15 Aligned_cols=93 Identities=30% Similarity=0.372 Sum_probs=66.2
Q ss_pred HHHHHHHhc-cCCeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCC--
Q psy6781 293 QRWVAILSK-EYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVP-- 369 (534)
Q Consensus 293 ~~wl~~l~~-~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~p-- 369 (534)
+.|++.|.+ .|+ ++.+|+.++.|++.|.+.|+ .-+++|+|.+|||||||||+|.+.....++.+.
T Consensus 2 ~~~~~~y~~~gy~--v~~~S~~~~~g~~~l~~~l~----------~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~ 69 (161)
T PF03193_consen 2 EELLEQYEKLGYP--VFFISAKTGEGIEELKELLK----------GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEK 69 (161)
T ss_dssp HHHHHHHHHTTSE--EEE-BTTTTTTHHHHHHHHT----------TSEEEEECSTTSSHHHHHHHHHTSS----S-----
T ss_pred HHHHHHHHHcCCc--EEEEeCCCCcCHHHHHHHhc----------CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcc
Confidence 467777766 343 45568889999999988886 256789999999999999999998766666554
Q ss_pred ---C--ceeeeEEEEeCccEEEEeCCCcccCCC
Q psy6781 370 ---G--ETKVWQYITLMRRIYLIDCPGVVYDMT 397 (534)
Q Consensus 370 ---g--tTk~~~~~~~~~~i~liDtPGi~~p~~ 397 (534)
| ||++.+++.++.+.+||||||+.....
T Consensus 70 ~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 70 TGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp ---------SEEEEEETTSEEEECSHHHHT--G
T ss_pred cCCCcccCCCeeEEecCCCcEEEECCCCCcccc
Confidence 2 778889999999999999999987663
No 35
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.35 E-value=3.3e-12 Score=123.36 Aligned_cols=124 Identities=30% Similarity=0.407 Sum_probs=90.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC-ceeeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCCcc--hH----HH---
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVET--DT----EK--- 405 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~-~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~~~--~~----e~--- 405 (534)
...-|+|+|.+|||||||||+|++++ .+.+|..||.|+...++.++..+.|+|.||+.+....... .. +.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999965 6899999999999999999999999999999887632110 00 01
Q ss_pred ---HHccccc-ccc---CCCchhhHHHHHHhhccceeeehcCCCCCCCHH--HHHHHHHHHhC
Q psy6781 406 ---VLRGVVR-VEN---IDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTE--DFLKKLAFKWG 459 (534)
Q Consensus 406 ---vL~gvv~-v~~---i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~~--efLe~la~k~g 459 (534)
-|.+++- ++. +.+.+..+.+.|.....+++...+|+|.....+ ..+..+++..+
T Consensus 103 ~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 103 KRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred hchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 1333221 111 222244567788888999999999999887533 34667776554
No 36
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.3e-12 Score=139.21 Aligned_cols=62 Identities=32% Similarity=0.402 Sum_probs=54.9
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e-CccEEEEeCCCcccCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L-MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~-~~~i~liDtPGi~~p~ 396 (534)
..+++++++|.||||||||+|+|.++..+.|+++|||||+..... + +-.+.|+||.|+....
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~ 279 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD 279 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc
Confidence 468999999999999999999999999999999999999975443 3 4479999999999654
No 37
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.23 E-value=4.7e-11 Score=121.10 Aligned_cols=115 Identities=23% Similarity=0.372 Sum_probs=75.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE---EeCccEEEEeCCCcccCCCCCcc----hHHHHHcc--
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI---TLMRRIYLIDCPGVVYDMTNVET----DTEKVLRG-- 409 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~---~~~~~i~liDtPGi~~p~~~~~~----~~e~vL~g-- 409 (534)
.|+++|.||||||||+|+|++.+.+.+++.|+||++.... ..+.++.|+||||+..+...... .....+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999999999999999999875322 22357899999999865411100 01112222
Q ss_pred ----ccccccCCCchhhHHHHHHhhccceeeehcCCCCCCCHHHHHHHH
Q psy6781 410 ----VVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKL 454 (534)
Q Consensus 410 ----vv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~~efLe~l 454 (534)
+++.........++...+.....+.+.+.||+|.. +..++++.+
T Consensus 82 vvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~-~~~~~~~~~ 129 (270)
T TIGR00436 82 LILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNK-FKDKLLPLI 129 (270)
T ss_pred EEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCC-CHHHHHHHH
Confidence 12222211222455666666778889999999976 344444333
No 38
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.19 E-value=1.9e-10 Score=122.88 Aligned_cols=144 Identities=24% Similarity=0.278 Sum_probs=85.9
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe--C--ccEEEEeCCCcccCCCCCcchHHHHHcc-----
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL--M--RRIYLIDCPGVVYDMTNVETDTEKVLRG----- 409 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~--~--~~i~liDtPGi~~p~~~~~~~~e~vL~g----- 409 (534)
.|+|||+||||||||||+|++.+. .++++|+||+.+.+..+ . ..+.|+||||+..+...........++.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 699999999999999999999875 89999999998776543 2 3599999999987653221111222221
Q ss_pred ----ccccccC--CCchhh---HHHHHHhh-----ccceeeehcCCCCCCCH--HHHHHHHHHHhCC---cc---ccCcc
Q psy6781 410 ----VVRVENI--DDPVQY---IDAVLERI-----KKVHLVKTYGIDEWEDT--EDFLKKLAFKWGK---IK---KKGEP 467 (534)
Q Consensus 410 ----vv~v~~i--~~~~~~---i~~iL~r~-----~k~~l~~~ykId~~~d~--~efLe~la~k~g~---l~---kgG~p 467 (534)
++.+... .++.+. +...|... .++.+.+.||+|..... .+.+..+++..+. .. ....-
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~ 319 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGL 319 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCc
Confidence 2222111 122222 22223322 36778899999976422 2344455544331 11 11223
Q ss_pred hHHHHHHHHHHHHHcC
Q psy6781 468 VITASAKMVLNDWQRG 483 (534)
Q Consensus 468 D~~~aA~~vL~d~~~G 483 (534)
.+......+...+..+
T Consensus 320 GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 320 GVKELCWDLMTFIEEN 335 (390)
T ss_pred CHHHHHHHHHHHhhhC
Confidence 5566666666666555
No 39
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.18 E-value=3.4e-10 Score=114.84 Aligned_cols=118 Identities=12% Similarity=0.035 Sum_probs=88.9
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
..+.++.||||++.... .+++.|.+.++..+.++|+|++|+|++.+.... ..+...+.. .++|.++|+||+
T Consensus 47 ~~qii~vDTPG~~~~~~------~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~ 117 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKH------SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKL 117 (270)
T ss_pred CcEEEEEECcCCCCCcc------hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECe
Confidence 45688999999876533 356677888899999999999999999765432 344444543 578999999999
Q ss_pred CCCChhhHHHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 285 DLVPIWVTQRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
|+++......+...+....+ ..+|.+||+++.|++.|++.|.++++.
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 118 DNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred eCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 99876555445555544333 257889999999999999999987764
No 40
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.18 E-value=1e-10 Score=120.12 Aligned_cols=109 Identities=30% Similarity=0.351 Sum_probs=75.1
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHH----HHH
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTE----KVL 407 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e----~vL 407 (534)
....+|.+.||||||||||+++|++.+. .++++|.|||..+..+.. .++.+|||||+.....+...+.+ .+|
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 4678999999999999999999999885 899999999998777654 48999999999976643323222 344
Q ss_pred cccccccc-CCCch-----------hhHHHHHHhhccceeeehcCCCCC
Q psy6781 408 RGVVRVEN-IDDPV-----------QYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 408 ~gvv~v~~-i~~~~-----------~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
+++-.+-. +-||. .....+-.....+.+.+.||+|..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIA 293 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 43322110 11221 112223334446788899999965
No 41
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.15 E-value=7.6e-11 Score=103.68 Aligned_cols=58 Identities=41% Similarity=0.647 Sum_probs=49.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--Ee-CccEEEEeCCCcccCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TL-MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~-~~~i~liDtPGi~~p~ 396 (534)
+|+++|.||+|||||||+|++.+.+.++..+++|+...+. .. ...+.|+||||+....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 5899999999999999999998888999999999987543 23 4567999999998765
No 42
>PRK00089 era GTPase Era; Reviewed
Probab=99.13 E-value=9.6e-11 Score=119.66 Aligned_cols=122 Identities=27% Similarity=0.362 Sum_probs=78.9
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--EeC-ccEEEEeCCCcccCCCCCcc----hHHHHHcc-
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TLM-RRIYLIDCPGVVYDMTNVET----DTEKVLRG- 409 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~~-~~i~liDtPGi~~p~~~~~~----~~e~vL~g- 409 (534)
-.|+++|.||||||||+|+|++.+.+.+++.|++|++.... ..+ .++.|+||||+..+...... .....+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999999999999999875432 222 48999999999765521110 01111211
Q ss_pred -----cccccc-CCCchhhHHHHHHhhccceeeehcCCCCCCCHHH---HHHHHHHHhC
Q psy6781 410 -----VVRVEN-IDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTED---FLKKLAFKWG 459 (534)
Q Consensus 410 -----vv~v~~-i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~~e---fLe~la~k~g 459 (534)
++.+.. +......+...+.....+.+.+.||+|...+..+ +++.++...+
T Consensus 86 D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~ 144 (292)
T PRK00089 86 DLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMD 144 (292)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCC
Confidence 112211 2233445555555556788899999998755443 4455554333
No 43
>PRK00089 era GTPase Era; Reviewed
Probab=99.08 E-value=1.8e-09 Score=110.36 Aligned_cols=120 Identities=17% Similarity=0.240 Sum_probs=93.4
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
+..+.++.||||++.... .++..+...++..+.++|++++|+|+.+++......+.+.+.. .++|+++|+||
T Consensus 51 ~~~qi~~iDTPG~~~~~~------~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNK 122 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKR------ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNK 122 (292)
T ss_pred CCceEEEEECCCCCCchh------HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEEC
Confidence 346889999999876543 3566777888889999999999999998766655555555553 46899999999
Q ss_pred CCCC-ChhhHHHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 284 VDLV-PIWVTQRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 284 iDLv-~~~~~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
+|++ +.......++.+.+.++ ..+|.+|+.++.|++.|++.|..+++.
T Consensus 123 iDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 123 IDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 9999 54556666676766444 457888999999999999999887653
No 44
>PRK09866 hypothetical protein; Provisional
Probab=99.04 E-value=2.2e-09 Score=119.09 Aligned_cols=115 Identities=14% Similarity=0.061 Sum_probs=85.5
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
..|++|.||||++.+... .+++.|.+ .+..+|+||+|+|+..+.+..+..+.+.++....+.|+|+|+||+
T Consensus 229 ~~QIIFVDTPGIhk~~~~-----~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQP-----HLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccch-----HHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 478999999999876442 23455553 699999999999999887777778888887532235999999999
Q ss_pred CCCC-----hhhHHHHHHHH-h-ccC-CeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 285 DLVP-----IWVTQRWVAIL-S-KEY-PTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 285 DLv~-----~~~~~~wl~~l-~-~~~-p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|+.+ ...+..+++.+ . ... +..+|++||..+.|++.|++.|.+.
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 9985 23444444422 2 223 3568999999999999999999874
No 45
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.04 E-value=9e-10 Score=104.28 Aligned_cols=110 Identities=27% Similarity=0.406 Sum_probs=73.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC-ceeeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCCc--chH----HHHHc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVE--TDT----EKVLR 408 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~-~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~~--~~~----e~vL~ 408 (534)
...+|+++|.+|+|||||+|+|++.. ...+++.+|+|.+..++..+..+.++||||+........ ... ...+.
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~ 96 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLE 96 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHH
Confidence 57899999999999999999999975 677889999999877666667899999999865431111 001 11111
Q ss_pred ------c---cccccc-CCCchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 409 ------G---VVRVEN-IDDPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 409 ------g---vv~v~~-i~~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
+ ++.... +......+..++.....+.+...+|+|...
T Consensus 97 ~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 97 KRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred hChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 1 111111 212222334455556677888889998763
No 46
>KOG1423|consensus
Probab=99.04 E-value=5.2e-10 Score=113.75 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=78.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCCCc--------chHH
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTNVE--------TDTE 404 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~~~--------~~~e 404 (534)
+.++|++||.||||||||.|.+.|.+++.++..+.||++..+..+ ..++.|+||||++.+...-. .+..
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 568999999999999999999999999999999999998655433 45899999999998773211 0111
Q ss_pred HHHcccccccc---CCCch----hhHHHHHHhhc-cceeeehcCCCCCCCHHHHHHHHH
Q psy6781 405 KVLRGVVRVEN---IDDPV----QYIDAVLERIK-KVHLVKTYGIDEWEDTEDFLKKLA 455 (534)
Q Consensus 405 ~vL~gvv~v~~---i~~~~----~~i~~iL~r~~-k~~l~~~ykId~~~d~~efLe~la 455 (534)
.++..+.-+-. ..++. .-++..|.+.. .+.+.+.++||.......+|...+
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~ 209 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKD 209 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHH
Confidence 22222111111 11111 12344444443 456778889987665555544433
No 47
>KOG1191|consensus
Probab=99.04 E-value=3.7e-10 Score=120.79 Aligned_cols=61 Identities=31% Similarity=0.463 Sum_probs=53.5
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYD 395 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p 395 (534)
..++.|+++|.||||||||+|+|.......|+++||||++..... .+..++|+||.|+...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~ 329 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE 329 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc
Confidence 357999999999999999999999999999999999999864332 3558999999999983
No 48
>PRK15494 era GTPase Era; Provisional
Probab=99.03 E-value=5.4e-10 Score=117.29 Aligned_cols=61 Identities=33% Similarity=0.451 Sum_probs=50.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--Ee-CccEEEEeCCCcccCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TL-MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~-~~~i~liDtPGi~~p~ 396 (534)
+..+|+++|.||||||||+|+|++.+.+.+++.|++|++.... .. +.++.|+||||+..+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc
Confidence 4568999999999999999999999988899999999875432 22 4589999999997543
No 49
>PRK15494 era GTPase Era; Provisional
Probab=99.01 E-value=3.3e-09 Score=111.41 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=89.0
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
+..+..+.||||++.... .+...+.+.++..+.++|+||+|+|+.+++......+.+.+.. .+.|+|+|+||
T Consensus 98 ~~~qi~~~DTpG~~~~~~------~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNK 169 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKG------SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNK 169 (339)
T ss_pred CCeEEEEEECCCcCCCcc------cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEh
Confidence 345788999999875433 3567788888899999999999999988766544444444443 45788999999
Q ss_pred CCCCChhhHHHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 284 VDLVPIWVTQRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
+||.+. ......+.+....+ ..+|.+||+++.|++.|++.|.+.++.
T Consensus 170 iDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 170 IDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred hcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 999754 23444445544443 467889999999999999999987764
No 50
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.98 E-value=5e-10 Score=120.24 Aligned_cols=107 Identities=27% Similarity=0.344 Sum_probs=73.5
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCCCCCc----chHHHHHccc-
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDMTNVE----TDTEKVLRGV- 410 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~~~~~----~~~e~vL~gv- 410 (534)
+|+++|.||||||||+|+|++...+.+++.||+|++.++.. .+..+.|+||||+........ ......+..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 37999999999999999999998888999999999876543 245799999999853321000 0111222221
Q ss_pred -----cc-cccCCCchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 411 -----VR-VENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 411 -----v~-v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
+. .+.+...+..+..+|.+..++.+.+.||+|...
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 11 112222234566778888889999999999654
No 51
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.97 E-value=3.3e-09 Score=100.77 Aligned_cols=60 Identities=38% Similarity=0.689 Sum_probs=52.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC-ceeeCCCCCceeeeEEEEeCccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~-~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p 395 (534)
..++|+++|.+|||||||||+|++.. .+.+++.+|+|+...+...+.++.|+||||+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCc
Confidence 46789999999999999999999975 6788899999998877776778999999997643
No 52
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.96 E-value=5.7e-09 Score=105.18 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=52.0
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~ 396 (534)
...++|+++|.+|||||||+|+|++...+.++..+++|+..+.+.. +..+.||||||+....
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~ 93 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESV 93 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcch
Confidence 3579999999999999999999999998888888888877655432 4579999999998654
No 53
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.96 E-value=2e-09 Score=115.99 Aligned_cols=120 Identities=27% Similarity=0.388 Sum_probs=76.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe----CccEEEEeCCCcccCCCCCcchHHHHHcc----
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL----MRRIYLIDCPGVVYDMTNVETDTEKVLRG---- 409 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~----~~~i~liDtPGi~~p~~~~~~~~e~vL~g---- 409 (534)
..|+|||+||||||||||+|++.+. .+++.|+||..+.+..+ ...+.|+||||+..............|++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3699999999999999999998774 68999999998776543 45799999999986442222222223332
Q ss_pred -----ccccccC--CCchhh---HHHHHHh-----hccceeeehcCCCCCCCHHHHHHHHHHHhC
Q psy6781 410 -----VVRVENI--DDPVQY---IDAVLER-----IKKVHLVKTYGIDEWEDTEDFLKKLAFKWG 459 (534)
Q Consensus 410 -----vv~v~~i--~~~~~~---i~~iL~r-----~~k~~l~~~ykId~~~d~~efLe~la~k~g 459 (534)
++.+... .+|.+. +...|.. ..++.+.+.||+|.. +..+.++.+++..+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~-~~~e~l~~l~~~l~ 301 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP-EAEENLEEFKEKLG 301 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc-CCHHHHHHHHHHhC
Confidence 2232211 133222 2222332 246788899999964 33445566665544
No 54
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.95 E-value=1.4e-08 Score=91.97 Aligned_cols=111 Identities=24% Similarity=0.321 Sum_probs=82.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||+..... ...+.++++....+..+|++++|+|++.+....+..+.+++.. .++|+++|+||+|
T Consensus 45 ~~~~i~DtpG~~~~~~------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D 116 (157)
T cd01894 45 REFILIDTGGIEPDDE------GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVD 116 (157)
T ss_pred eEEEEEECCCCCCchh------HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcc
Confidence 4567899999754322 2456778888888999999999999998887776677777764 4699999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+.+.... ...+.......++.+|++++.|+++|++.|.+
T Consensus 117 ~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 117 NIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred cCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence 9876543 12222222223577899999999999988864
No 55
>KOG1489|consensus
Probab=98.94 E-value=1.7e-09 Score=110.47 Aligned_cols=121 Identities=28% Similarity=0.371 Sum_probs=84.9
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe----CccEEEEeCCCcccCCCCCcchHHHHHccc---
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL----MRRIYLIDCPGVVYDMTNVETDTEKVLRGV--- 410 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~----~~~i~liDtPGi~~p~~~~~~~~e~vL~gv--- 410 (534)
..||+||+||+|||||+|+|...+. +++.++.||-.+.+... ..++.+-|.|||+.........--..|+++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 4689999999999999999999886 99999999988765543 246999999999987744333333444443
Q ss_pred ------ccccc--CCCchhhHHHHHH--------hhccceeeehcCCCCCCCHHHHHHHHHHHhC
Q psy6781 411 ------VRVEN--IDDPVQYIDAVLE--------RIKKVHLVKTYGIDEWEDTEDFLKKLAFKWG 459 (534)
Q Consensus 411 ------v~v~~--i~~~~~~i~~iL~--------r~~k~~l~~~ykId~~~d~~efLe~la~k~g 459 (534)
+++.. +..|.+.+..+.. ...++.+.+.||||..+...++|+.++++..
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq 340 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ 340 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC
Confidence 22221 1244444333221 1236688899999987666788899998775
No 56
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.94 E-value=3.9e-09 Score=101.68 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=47.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCC-CCCceeeeEEEE---eCccEEEEeCCCcccCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAP-VPGETKVWQYIT---LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~-~pgtTk~~~~~~---~~~~i~liDtPGi~~p~ 396 (534)
++|+++|.||||||||+|+|++.+.+.++. .+|+|+..+... .+..+.||||||+....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc
Confidence 368999999999999999999988766554 567887765432 35689999999998765
No 57
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.94 E-value=4.8e-09 Score=110.05 Aligned_cols=106 Identities=28% Similarity=0.411 Sum_probs=68.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe----CccEEEEeCCCcccCCCCCcchHHHHHcc----
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL----MRRIYLIDCPGVVYDMTNVETDTEKVLRG---- 409 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~----~~~i~liDtPGi~~p~~~~~~~~e~vL~g---- 409 (534)
..|+|||+||||||||||+|++.+. .++++|+||..+++..+ ...+.++||||+..............++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4689999999999999999998764 68999999998765433 24699999999986543222222233332
Q ss_pred -----ccccccCCCchhh---HHHHHHh-----hccceeeehcCCCCCC
Q psy6781 410 -----VVRVENIDDPVQY---IDAVLER-----IKKVHLVKTYGIDEWE 445 (534)
Q Consensus 410 -----vv~v~~i~~~~~~---i~~iL~r-----~~k~~l~~~ykId~~~ 445 (534)
++++.... +.+. +...|.. ..++.+.+.||+|...
T Consensus 238 ~vlI~ViD~s~~~-s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 238 RLLLHLVDIEAVD-PVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred CEEEEEEcCCCCC-CHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 22222111 1222 2222332 2467888999999754
No 58
>PTZ00258 GTP-binding protein; Provisional
Probab=98.94 E-value=1e-09 Score=116.89 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=50.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe--------------------CccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL--------------------MRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~--------------------~~~i~liDtPGi~~p 395 (534)
..++||+||+||||||||+|+|++.. +.++++|++|+++..... +.++.|+||||++..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 57899999999999999999998877 489999999987654332 225899999999976
Q ss_pred CC
Q psy6781 396 MT 397 (534)
Q Consensus 396 ~~ 397 (534)
..
T Consensus 99 a~ 100 (390)
T PTZ00258 99 AS 100 (390)
T ss_pred Cc
Confidence 53
No 59
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.94 E-value=4.5e-09 Score=116.80 Aligned_cols=120 Identities=28% Similarity=0.350 Sum_probs=77.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCCCCCcchHHHHHc-----
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDMTNVETDTEKVLR----- 408 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~~~~~~~~e~vL~----- 408 (534)
..+|+++|.||||||||+|+|+|.. ..|++.||+|....... .+..+.++|.||++.-. ..+..|.+.+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~--~~S~DE~Var~~ll~ 79 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT--AYSEDEKVARDFLLE 79 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCC--CCCchHHHHHHHHhc
Confidence 4569999999999999999999987 48999999998765443 35679999999999766 3333333332
Q ss_pred c-------ccccccCCCchhhHHHHHHhhccceeeehcCCCCCCCH--HHHHHHHHHHhCC
Q psy6781 409 G-------VVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDT--EDFLKKLAFKWGK 460 (534)
Q Consensus 409 g-------vv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~--~efLe~la~k~g~ 460 (534)
+ +++..+++. .-|+.-.|...+.+.+...|.+|..+.. .--.+++.+..|.
T Consensus 80 ~~~D~ivnVvDAtnLeR-nLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv 139 (653)
T COG0370 80 GKPDLIVNVVDATNLER-NLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV 139 (653)
T ss_pred CCCCEEEEEcccchHHH-HHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC
Confidence 2 222222211 1233334555677788888988854311 0013455555553
No 60
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.92 E-value=1.3e-09 Score=114.99 Aligned_cols=58 Identities=31% Similarity=0.406 Sum_probs=48.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--EeC------------------ccEEEEeCCCcccCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TLM------------------RRIYLIDCPGVVYDM 396 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~~------------------~~i~liDtPGi~~p~ 396 (534)
++||+||+||||||||+|+|++.. +.++++|++|.++... ... ..+.|+|+||++...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 689999999999999999999988 6899999999876532 221 248999999999655
No 61
>PRK04213 GTP-binding protein; Provisional
Probab=98.92 E-value=6.2e-09 Score=99.87 Aligned_cols=56 Identities=30% Similarity=0.459 Sum_probs=47.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++.. ..++..||+|.....+... .+.++||||+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~ 63 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGFG 63 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCccc
Confidence 35789999999999999999999876 5688899999876555544 79999999974
No 62
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.92 E-value=4e-09 Score=115.54 Aligned_cols=59 Identities=36% Similarity=0.489 Sum_probs=49.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~ 396 (534)
-..|+|||+||||||||||+|++.+. .++++|+||..+.+..+ +..+.|+||||++...
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliega 220 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGA 220 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCcccc
Confidence 35799999999999999999998764 67999999998765443 3479999999998654
No 63
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.90 E-value=1.9e-09 Score=111.26 Aligned_cols=120 Identities=31% Similarity=0.389 Sum_probs=79.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e--CccEEEEeCCCcccCCCCCcchHHH---------
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L--MRRIYLIDCPGVVYDMTNVETDTEK--------- 405 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~--~~~i~liDtPGi~~p~~~~~~~~e~--------- 405 (534)
.||+||+||+|||||||++...+. +++++|.||-++.+.. . ...+.+-|.||++....++..--..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 489999999999999999998775 8999999999876532 2 3469999999999877544332233
Q ss_pred HHccccccccCC--CchhhHHHH---HHh-----hccceeeehcCCCCCCCHHH---HHHHHHHHhC
Q psy6781 406 VLRGVVRVENID--DPVQYIDAV---LER-----IKKVHLVKTYGIDEWEDTED---FLKKLAFKWG 459 (534)
Q Consensus 406 vL~gvv~v~~i~--~~~~~i~~i---L~r-----~~k~~l~~~ykId~~~d~~e---fLe~la~k~g 459 (534)
+|.+++.+.... +|.+....+ |.. ..++.+.+.||+|...+.++ +...++...+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~ 306 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG 306 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC
Confidence 344444443332 343322222 322 23677899999996555443 3344444433
No 64
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.89 E-value=1.3e-09 Score=111.15 Aligned_cols=57 Identities=32% Similarity=0.418 Sum_probs=46.9
Q ss_pred EEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--eCc------------------cEEEEeCCCcccCCC
Q psy6781 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--LMR------------------RIYLIDCPGVVYDMT 397 (534)
Q Consensus 340 v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~~~------------------~i~liDtPGi~~p~~ 397 (534)
||+||+||||||||+|+|++... .+++.|++|.++.... +.. .+.|+|+||++....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~ 77 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 77 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc
Confidence 58999999999999999999887 8999999998765422 211 489999999996553
No 65
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.87 E-value=5.6e-09 Score=94.50 Aligned_cols=111 Identities=26% Similarity=0.359 Sum_probs=69.4
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCCCcch----HHHHHcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTNVETD----TEKVLRG 409 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~~~~~----~e~vL~g 409 (534)
..+|+++|.||+|||||+|+|.+...+.+++.+++|+....... ...+.++||||+..+....... ....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999988888888888776433221 2468899999987654111000 0111111
Q ss_pred ------cccccc-CCCchhhHHHHHHhhccceeeehcCCCCCCCH
Q psy6781 410 ------VVRVEN-IDDPVQYIDAVLERIKKVHLVKTYGIDEWEDT 447 (534)
Q Consensus 410 ------vv~v~~-i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~ 447 (534)
++.... .......+...+.....+.+.+.+|+|...+.
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 127 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK 127 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH
Confidence 111111 12233344455555556778888999876443
No 66
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.87 E-value=1e-08 Score=108.20 Aligned_cols=58 Identities=28% Similarity=0.315 Sum_probs=47.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEe--CccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITL--MRRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~--~~~i~liDtPGi~~ 394 (534)
+.++|+++|+||||||||+|+|++.. ..+.+.||+|.+... +.+ +..+.|+||||+..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 45899999999999999999999987 577889999977543 233 34799999999953
No 67
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.86 E-value=1.4e-08 Score=106.36 Aligned_cols=58 Identities=34% Similarity=0.483 Sum_probs=48.2
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe--C--ccEEEEeCCCcccCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL--M--RRIYLIDCPGVVYDM 396 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~--~--~~i~liDtPGi~~p~ 396 (534)
..|+|||+||||||||||+|++.+. .++++|+||..+++..+ + ..+.|+||||+....
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a 219 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGA 219 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCC
Confidence 4689999999999999999998764 68999999988765433 2 579999999997654
No 68
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.86 E-value=6.4e-09 Score=119.17 Aligned_cols=109 Identities=22% Similarity=0.278 Sum_probs=75.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCCCc----chHHHHHcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTNVE----TDTEKVLRG 409 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~~~----~~~e~vL~g 409 (534)
..+|+++|.||||||||+|+|++...+.+++.||+|++...... +..+.|+||||+........ ......+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 46799999999999999999999888889999999998765432 45789999999874321000 011112222
Q ss_pred ------cccc-ccCCCchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 410 ------VVRV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 410 ------vv~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
++.. +.+...+..+...|....++.+.+.||+|...
T Consensus 355 aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 1111 12222334566777788889999999999654
No 69
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.85 E-value=6e-09 Score=113.12 Aligned_cols=61 Identities=30% Similarity=0.373 Sum_probs=51.3
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e-CccEEEEeCCCcccC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L-MRRIYLIDCPGVVYD 395 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~-~~~i~liDtPGi~~p 395 (534)
+.+++|+++|.||||||||+|+|++...+.++++||+|++..... + +..+.++||||+...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence 467999999999999999999999988778999999999865332 2 346899999999654
No 70
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.84 E-value=1.6e-08 Score=108.29 Aligned_cols=110 Identities=20% Similarity=0.253 Sum_probs=85.7
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLV 287 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv 287 (534)
..+.||+|++++.. ..++..+++.++.++.+|+||+|+|++.|+...+..+...+ ..++|.++|+||+||.
T Consensus 267 v~l~DTAGiRet~d------~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~---~~~~~~i~v~NK~DL~ 337 (454)
T COG0486 267 VRLVDTAGIRETDD------VVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELL---PKKKPIIVVLNKADLV 337 (454)
T ss_pred EEEEecCCcccCcc------HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc---ccCCCEEEEEechhcc
Confidence 34789999998877 57889999999999999999999999999777666655522 2579999999999999
Q ss_pred ChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 288 PIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 288 ~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+....... .+... ...+.+|++++.|++.|.+.|.++..
T Consensus 338 ~~~~~~~~--~~~~~--~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 338 SKIELESE--KLANG--DAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred cccccchh--hccCC--CceEEEEecCccCHHHHHHHHHHHHh
Confidence 86542221 11122 23567799999999999999987654
No 71
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.84 E-value=3.4e-09 Score=115.94 Aligned_cols=108 Identities=24% Similarity=0.323 Sum_probs=73.1
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCCCc----chHHHHHcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTNVE----TDTEKVLRG 409 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~~~----~~~e~vL~g 409 (534)
..+|++||.||||||||+|+|++...+.+.+.||+|++...... +..+.|+||||+........ ......+.+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 46899999999999999999999887788999999988655432 45789999999863220000 011122222
Q ss_pred c------ccc-ccCCCchhhHHHHHHhhccceeeehcCCCCC
Q psy6781 410 V------VRV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 410 v------v~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
+ +.+ +.+......+..+|.....+.+.+.||+|..
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 1 111 1222224556667777778899999999964
No 72
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.83 E-value=2.7e-08 Score=95.17 Aligned_cols=110 Identities=19% Similarity=0.227 Sum_probs=75.9
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.|+||.. .+..++...+..+|++|+|+||.++..........++.. .++|+|+|+||+
T Consensus 69 ~~~i~~iDtPG~~--------------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~ 132 (188)
T PF00009_consen 69 NRKITLIDTPGHE--------------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKM 132 (188)
T ss_dssp SEEEEEEEESSSH--------------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETC
T ss_pred ccceeeccccccc--------------ceeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeec
Confidence 4456789999942 234566677899999999999998866544444444443 578999999999
Q ss_pred CCCChh---hHHHHHHHHhccC------CeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 285 DLVPIW---VTQRWVAILSKEY------PTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 285 DLv~~~---~~~~wl~~l~~~~------p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+.... ....+...|.+.+ ...++++|+.++.|++.|++.|.+++|
T Consensus 133 D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 133 DLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 998432 2233332332211 245778999999999999999988765
No 73
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.81 E-value=9.2e-08 Score=86.49 Aligned_cols=116 Identities=19% Similarity=0.312 Sum_probs=84.8
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||+..... .....+.......+..+|++++|+|+..|.......+.+.+.. .+.|.++|+||+
T Consensus 50 ~~~~~liDtpG~~~~~~------~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~ 121 (168)
T cd04163 50 DAQIIFVDTPGIHKPKK------KLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKI 121 (168)
T ss_pred CeEEEEEECCCCCcchH------HHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEch
Confidence 34567889999754332 1222344455667899999999999999866555566665553 358999999999
Q ss_pred CCC-ChhhHHHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHH
Q psy6781 285 DLV-PIWVTQRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 285 DLv-~~~~~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|+. .......+...+....+ ..++.+|+.++.|++.|.+.|.++
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 122 DLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred hccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 998 45566777777776654 456778999999999999988754
No 74
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.80 E-value=4.9e-09 Score=94.97 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=67.2
Q ss_pred EEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCCCc----chHHHHHccc---
Q psy6781 341 GFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTNVE----TDTEKVLRGV--- 410 (534)
Q Consensus 341 ~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~~~----~~~e~vL~gv--- 410 (534)
+++|.+|||||||+|+|.+.....++..|++|+....... +..+.++||||+........ ......+..+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4899999999999999999887778889999976544332 35789999999975331000 0111222221
Q ss_pred ---cccc-cCCCchhhHHHHHHhhccceeeehcCCCCCCC
Q psy6781 411 ---VRVE-NIDDPVQYIDAVLERIKKVHLVKTYGIDEWED 446 (534)
Q Consensus 411 ---v~v~-~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d 446 (534)
+... ........+..++.....+.+.+.||+|....
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 1111 11111223445566667788889999987643
No 75
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.79 E-value=2e-08 Score=91.90 Aligned_cols=60 Identities=32% Similarity=0.417 Sum_probs=47.9
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EE-eCccEEEEeCCCcccCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--IT-LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~-~~~~i~liDtPGi~~p~ 396 (534)
.++|+++|.+|+|||||+|+|.+.....+++.|++|..... +. .+..+.++||||+....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCcccc
Confidence 46899999999999999999999877777888998876532 22 23568999999987553
No 76
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.78 E-value=1.3e-07 Score=86.51 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=79.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||+..... ....+....+......+..+|++++|+|+.+|.......+.+++.. .++|+++|+||+|+
T Consensus 51 ~~~iiDtpG~~~~~~---~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl 125 (174)
T cd01895 51 KYTLIDTAGIRRKGK---VEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDL 125 (174)
T ss_pred eEEEEECCCCccccc---hhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEecccc
Confidence 356889999754321 0011222223344566789999999999999987665555555433 46899999999999
Q ss_pred CCh--hhHHHHHHHHhccCC----eEEeeeccCCCCChHHHHHHHHH
Q psy6781 287 VPI--WVTQRWVAILSKEYP----TIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 287 v~~--~~~~~wl~~l~~~~p----~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
.+. .....+.+.+.+..+ ..+|.+|++++.|+..+.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 126 VEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 876 445555555554432 34778899999999999888875
No 77
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.76 E-value=3.8e-08 Score=90.94 Aligned_cols=114 Identities=20% Similarity=0.192 Sum_probs=75.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCC-CCCc-HHHHHHHHhh---CCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPM-GTRC-AHIENFLRRE---KPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl-~s~~-~~le~~L~~~---~~~k~~IlVL 281 (534)
...+.||||+..... ....++...+..+..+|++++|+|+.++. .... ..+.+.+... ..++|+++|+
T Consensus 49 ~~~l~DtpG~~~~~~-------~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 121 (170)
T cd01898 49 SFVVADIPGLIEGAS-------EGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVL 121 (170)
T ss_pred eEEEEecCcccCccc-------ccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEE
Confidence 567899999743221 01123455566678899999999999772 2211 1222223221 1368999999
Q ss_pred eCCCCCChhhHHHHHHHHhcc-CCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 282 NKVDLVPIWVTQRWVAILSKE-YPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~~~-~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
||+||.+......|...+... .....+.+|++++.|+++|.+.|.+
T Consensus 122 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 122 NKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred EchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHh
Confidence 999998876666666655443 2334677899999999999888765
No 78
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.76 E-value=4.2e-08 Score=90.66 Aligned_cols=55 Identities=35% Similarity=0.501 Sum_probs=43.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---Cc-cEEEEeCCCccc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MR-RIYLIDCPGVVY 394 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~-~i~liDtPGi~~ 394 (534)
.|+++|.+|||||||+|+|.+... .++..|++|........ +. .+.|+||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 489999999999999999998664 67888888876543322 33 789999999853
No 79
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.74 E-value=2.3e-08 Score=115.15 Aligned_cols=122 Identities=22% Similarity=0.303 Sum_probs=78.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCC--CcchHHHH----H
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTN--VETDTEKV----L 407 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~--~~~~~e~v----L 407 (534)
.++|+++|.||||||||+|+|++... .+++.||+|.+...... +..+.++||||+..-... ..+..+.+ +
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 56899999999999999999998764 78999999987543322 457999999999754311 01111221 1
Q ss_pred c--------cccccccCCCchhhHHHHHHhhccceeeehcCCCCCC--CHHHHHHHHHHHhCC
Q psy6781 408 R--------GVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE--DTEDFLKKLAFKWGK 460 (534)
Q Consensus 408 ~--------gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~--d~~efLe~la~k~g~ 460 (534)
. .+++...+.. ..++...+...+.+.+...|++|..+ ....-++.++++.|.
T Consensus 82 ~~~~aD~vI~VvDat~ler-~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~ 143 (772)
T PRK09554 82 LSGDADLLINVVDASNLER-NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGC 143 (772)
T ss_pred hccCCCEEEEEecCCcchh-hHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCC
Confidence 1 1222222211 23334445666788999999999653 223345777777764
No 80
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.74 E-value=2.2e-08 Score=108.92 Aligned_cols=62 Identities=32% Similarity=0.378 Sum_probs=51.3
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--Ee-CccEEEEeCCCcccCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TL-MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~-~~~i~liDtPGi~~p~ 396 (534)
..+++|+++|+||||||||+|+|++...+.+++.||+|++.... .+ +..+.|+||||+..+.
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~ 277 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD 277 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc
Confidence 35789999999999999999999998877899999999875432 22 3478999999997543
No 81
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.73 E-value=1.9e-08 Score=106.50 Aligned_cols=106 Identities=23% Similarity=0.232 Sum_probs=61.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhC-----CCceeeCCCCCceeeeE-EEEe-CccEEEEeCCCcccCCCCCcchHHHHHc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRN-----KKVCKTAPVPGETKVWQ-YITL-MRRIYLIDCPGVVYDMTNVETDTEKVLR 408 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~-----~~~~~v~~~pgtTk~~~-~~~~-~~~i~liDtPGi~~p~~~~~~~~e~vL~ 408 (534)
..++|+|+|-+|+|||||||+|+| ...+.||.+ .||.... |.+. .+++.|+|.||+..+.+....-.+.+-.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 578999999999999999999998 334555543 3454443 3332 2589999999998877533322222211
Q ss_pred ------cccccccCCCchhhHHHHHHhhccceeeehcCCC
Q psy6781 409 ------GVVRVENIDDPVQYIDAVLERIKKVHLVKTYGID 442 (534)
Q Consensus 409 ------gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId 442 (534)
-++..+.+...+-.+...+.+.+++++.+..|+|
T Consensus 113 ~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD 152 (376)
T PF05049_consen 113 YRYDFFIIISSERFTENDVQLAKEIQRMGKKFYFVRTKVD 152 (376)
T ss_dssp GG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEEEE--HH
T ss_pred cccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEEEEeccc
Confidence 1233444544455566678888899888888876
No 82
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.72 E-value=5.2e-08 Score=103.65 Aligned_cols=153 Identities=19% Similarity=0.271 Sum_probs=105.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC----Cce-----------eeCCCCC---ceeeeEEE-------EeC----ccEEE
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK----KVC-----------KTAPVPG---ETKVWQYI-------TLM----RRIYL 386 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~----~~~-----------~v~~~pg---tTk~~~~~-------~~~----~~i~l 386 (534)
+.+.||++|.-|+|||||||++.+. .+. .++..+| +|+++.++ .+. ..+.|
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 6799999999999999999999998 555 5778899 88876552 233 58999
Q ss_pred EeCCCcccCCCCCc---c----------------------hHHHHHc-----ccccc-c---------cCCCchhhHHHH
Q psy6781 387 IDCPGVVYDMTNVE---T----------------------DTEKVLR-----GVVRV-E---------NIDDPVQYIDAV 426 (534)
Q Consensus 387 iDtPGi~~p~~~~~---~----------------------~~e~vL~-----gvv~v-~---------~i~~~~~~i~~i 426 (534)
+||+|+.....-+. . .+..++. |++-. + ...+.++.+...
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999987552111 1 1334444 11111 1 122334556667
Q ss_pred HHhhccceeeehcCCCCC-CCHHHHHHHHHHHhCCc------cccCcchHHHHHHHHHHHHHcCCCCcc
Q psy6781 427 LERIKKVHLVKTYGIDEW-EDTEDFLKKLAFKWGKI------KKKGEPVITASAKMVLNDWQRGKLPYY 488 (534)
Q Consensus 427 L~r~~k~~l~~~ykId~~-~d~~efLe~la~k~g~l------~kgG~pD~~~aA~~vL~d~~~Gkl~~~ 488 (534)
|+..+++++.++|+.++. ....++.+.+..+.+.- ..-.+.|+...-+.+|.+|-=-.+.++
T Consensus 176 Lk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFPv~Ei~~~ 244 (492)
T TIGR02836 176 LKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFPILEINID 244 (492)
T ss_pred HHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCCceEEEee
Confidence 888999999999999976 34456667777776531 133567889999999988866554443
No 83
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.72 E-value=1.9e-07 Score=90.73 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=72.3
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC-CcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT-RCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s-~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.+..+.||||. ..+.......+.++|++|+|+|+..|... ........+.. ...+|+|+|+||+
T Consensus 83 ~~i~~iDtPG~--------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGH--------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGLKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCCh--------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCCCcEEEEEEch
Confidence 56789999992 23456677888899999999999986322 11122222222 2234789999999
Q ss_pred CCCChhhHHHHHHHHhc---cC---CeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 285 DLVPIWVTQRWVAILSK---EY---PTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~---~~---p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||.+........+.+.+ .+ ...+|.+|++++.|++.|++.|.+.++
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 99875433222222221 11 234677899999999999999987654
No 84
>COG2262 HflX GTPases [General function prediction only]
Probab=98.70 E-value=9.2e-08 Score=101.13 Aligned_cols=138 Identities=17% Similarity=0.192 Sum_probs=94.7
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh-hCCCCcEEEEEe
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR-EKPHKHLFFILN 282 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~-~~~~k~~IlVLN 282 (534)
....++.||-|+...-.+++.+| ++...+-+..+|++++|+||.+|..... ..+.+.|.. ...++|.|+|+|
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~A------FksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~N 312 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEA------FKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLN 312 (411)
T ss_pred CceEEEecCccCcccCChHHHHH------HHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEe
Confidence 35678999999988777788776 5666777789999999999999943321 123344443 345699999999
Q ss_pred CCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhh
Q psy6781 283 KVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALR 358 (534)
Q Consensus 283 KiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~ 358 (534)
|+|++++... +..+....| ..+.+||.++.|++.|.+.|...++... ...+ ..+.+...| ++-.|.
T Consensus 313 KiD~~~~~~~---~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~--~~~~-l~lp~~~~~---~~~~l~ 378 (411)
T COG2262 313 KIDLLEDEEI---LAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGLR--TEVT-LELPYTDAG---RLSWLH 378 (411)
T ss_pred cccccCchhh---hhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhcc--cceE-EEcCccccc---HHHHHH
Confidence 9999876542 222333334 5677899999999999999987665322 1222 355666666 444444
No 85
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=8.4e-09 Score=108.03 Aligned_cols=73 Identities=27% Similarity=0.342 Sum_probs=57.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---------------------eCccEEEEeCCCcccC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---------------------LMRRIYLIDCPGVVYD 395 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---------------------~~~~i~liDtPGi~~p 395 (534)
.+++||||.||||||||+|+|+... +..+++|.+|-++.... ..-.+.|+|.+|++..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4689999999999999999999988 78999999998754321 0125789999999988
Q ss_pred CCCCcchHHHHHccc
Q psy6781 396 MTNVETDTEKVLRGV 410 (534)
Q Consensus 396 ~~~~~~~~e~vL~gv 410 (534)
.+.++..-+..|.++
T Consensus 81 As~GeGLGNkFL~~I 95 (372)
T COG0012 81 ASKGEGLGNKFLDNI 95 (372)
T ss_pred cccCCCcchHHHHhh
Confidence 876666656665443
No 86
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.69 E-value=4e-08 Score=101.63 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE---EeCccEEEEeCCCccc
Q psy6781 318 KGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI---TLMRRIYLIDCPGVVY 394 (534)
Q Consensus 318 i~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~---~~~~~i~liDtPGi~~ 394 (534)
...|+++|..+-.. +...++|+++|.+||||||++|+|++..++.+++.+++|...... ..+..+.+|||||+..
T Consensus 21 q~~l~~~l~~l~~~--~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 21 QTKLLELLGKLKEE--DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred HHHHHHHHHhcccc--cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 34566666543221 246789999999999999999999999988888887766543322 2355899999999986
Q ss_pred CC
Q psy6781 395 DM 396 (534)
Q Consensus 395 p~ 396 (534)
..
T Consensus 99 ~~ 100 (313)
T TIGR00991 99 GG 100 (313)
T ss_pred hH
Confidence 53
No 87
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.69 E-value=1.8e-07 Score=84.55 Aligned_cols=107 Identities=20% Similarity=0.183 Sum_probs=76.0
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||+.+... ......+...+..+.++|++++|+|+.++....+..+... ..++|+++|+||+|
T Consensus 49 ~~~~i~DtpG~~~~~~------~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D 118 (157)
T cd04164 49 IPVRLIDTAGIRETED------EIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSD 118 (157)
T ss_pred EEEEEEECCCcCCCcc------hHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchh
Confidence 3556889999765432 1334455667778889999999999998776654433322 35799999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
+.+.... .........+.+|++++.|++.|++.|...
T Consensus 119 ~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 119 LLPDSEL------LSLLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred cCCcccc------ccccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 9876533 112222345677999999999999988764
No 88
>PRK11058 GTPase HflX; Provisional
Probab=98.69 E-value=7.9e-08 Score=104.01 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=45.9
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEeC--ccEEEEeCCCccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLM--RRIYLIDCPGVVY 394 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~~--~~i~liDtPGi~~ 394 (534)
..|+++|+||||||||+|+|++.... +++.||+|.+... +.+. ..+.|+||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 58999999999999999999998865 8899999987543 2232 3789999999953
No 89
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.67 E-value=1e-07 Score=88.26 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=78.8
Q ss_pred EecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCC-C
Q psy6781 210 VRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLV-P 288 (534)
Q Consensus 210 ~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv-~ 288 (534)
++||||.-- -+.++++.+.....++|+|++|.||.+|.....+.+...+ ++|+|-|+||+||. +
T Consensus 40 ~IDTPGEyi----------E~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~ 104 (143)
T PF10662_consen 40 TIDTPGEYI----------ENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSD 104 (143)
T ss_pred EEECChhhe----------eCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccc
Confidence 478998432 2566778888899999999999999999888777776554 48999999999998 3
Q ss_pred hhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 289 IWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 289 ~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
........+.|.......+|.+|+.++.|+++|.++|.
T Consensus 105 ~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 105 DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 33444444455554444569999999999999999885
No 90
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.67 E-value=9.2e-08 Score=92.47 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=63.8
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeC-C---CCCceeeeEEEEe--CccEEEEeCCCcccCCCCCcchHHHH-Hcc-
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTA-P---VPGETKVWQYITL--MRRIYLIDCPGVVYDMTNVETDTEKV-LRG- 409 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~-~---~pgtTk~~~~~~~--~~~i~liDtPGi~~p~~~~~~~~e~v-L~g- 409 (534)
++|+++|.+|||||||||+|++......+ . ...+|.....+.. ...+.++||||+.......+...+.+ +.+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~ 81 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEY 81 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCc
Confidence 67999999999999999999985432111 1 1123444333322 24789999999975442111111111 111
Q ss_pred ----ccccccCCCchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 410 ----VVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 410 ----vv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
++....+...+..+...+....++.+.+.+|+|...
T Consensus 82 d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 82 DFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 111222334444556667777788899999999753
No 91
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.65 E-value=4.1e-07 Score=83.09 Aligned_cols=106 Identities=16% Similarity=0.083 Sum_probs=68.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||.. +++..+...+..+|++|+|+|+++.+.........++.. ...+|+|+|+||+||
T Consensus 52 ~~~~~DtpG~~--------------~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl 116 (164)
T cd04171 52 RLGFIDVPGHE--------------KFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGIKRGLVVLTKADL 116 (164)
T ss_pred EEEEEECCChH--------------HHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCCCcEEEEEECccc
Confidence 45678999942 223445566789999999999987543322222222322 223489999999999
Q ss_pred CChhh----HHHHHHHHhcc--CCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 287 VPIWV----TQRWVAILSKE--YPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 287 v~~~~----~~~wl~~l~~~--~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
.+... ...+.+.+... ....++.+|++++.|+++|++.|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 117 VDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 87532 23334444332 2345678899999999999888753
No 92
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.64 E-value=1.2e-07 Score=86.03 Aligned_cols=56 Identities=43% Similarity=0.755 Sum_probs=47.9
Q ss_pred EEEEecCCCchhHHHHhhhC-CCceeeCCCCCceeeeEEEEeCccEEEEeCCCcccC
Q psy6781 340 VGFIGYPNVGKSSIINALRN-KKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYD 395 (534)
Q Consensus 340 v~vvG~pnvGKSSliN~L~~-~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p 395 (534)
|+++|.+|+|||||+|+|++ ......++.+|.|.....+.....+.++||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCcccc
Confidence 78999999999999999993 555678888899888777777779999999998654
No 93
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.64 E-value=3.6e-08 Score=105.71 Aligned_cols=58 Identities=34% Similarity=0.426 Sum_probs=46.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE-----------------------e----CccEEEEeCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT-----------------------L----MRRIYLIDCP 390 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~-----------------------~----~~~i~liDtP 390 (534)
++||+||+||||||||+|+|++... .++++|++|..+.... . .-.+.|+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 5799999999999999999998864 7799999998765421 0 1247899999
Q ss_pred CcccCC
Q psy6781 391 GVVYDM 396 (534)
Q Consensus 391 Gi~~p~ 396 (534)
|++...
T Consensus 81 Gl~~ga 86 (396)
T PRK09602 81 GLVPGA 86 (396)
T ss_pred CcCCCc
Confidence 998654
No 94
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.63 E-value=2.3e-07 Score=84.31 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=73.7
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||....... ..+..++...+.. +++|++|+|+|+..+.. +..+...+.. .++|+|+|+||+|
T Consensus 43 ~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~-~~~d~vi~v~d~~~~~~--~~~~~~~~~~--~~~~~iiv~NK~D 112 (158)
T cd01879 43 KEIEIVDLPGTYSLSPY-----SEDEKVARDFLLG-EKPDLIVNVVDATNLER--NLYLTLQLLE--LGLPVVVALNMID 112 (158)
T ss_pred eEEEEEECCCccccCCC-----ChhHHHHHHHhcC-CCCcEEEEEeeCCcchh--HHHHHHHHHH--cCCCEEEEEehhh
Confidence 35678999997543220 1123334333333 69999999999987532 2233333332 4799999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
+.+......+.+.+.......+|.+|+.++.|+..|++.|.++
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 113 EAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred hcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 9875444444444444433446788999999999999888764
No 95
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.63 E-value=4.1e-07 Score=98.11 Aligned_cols=121 Identities=18% Similarity=0.211 Sum_probs=85.5
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||+....... ..+...........+..+|++|+|+|+..+....+..+..++.. .++|+|+|+||+
T Consensus 220 ~~~~~lvDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~--~~~~~ivv~NK~ 294 (435)
T PRK00093 220 GQKYTLIDTAGIRRKGKVT---EGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALE--AGRALVIVVNKW 294 (435)
T ss_pred CeeEEEEECCCCCCCcchh---hHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCcEEEEEECc
Confidence 3456789999986543311 12333344556678899999999999999887766666666543 479999999999
Q ss_pred CCCChhhHHHHHHHHhccCC----eEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 285 DLVPIWVTQRWVAILSKEYP----TIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~~~p----~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+.+......+.+.+..... .-++.+||+++.|+++|++.+.+...
T Consensus 295 Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 295 DLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred cCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99866554555555443221 33567899999999999988876543
No 96
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.62 E-value=7.1e-08 Score=87.14 Aligned_cols=60 Identities=32% Similarity=0.407 Sum_probs=48.8
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e-CccEEEEeCCCcccCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L-MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~-~~~i~liDtPGi~~p~ 396 (534)
+++|+++|.+|+|||||+|+|++...+.+++.|++|....... . +..+.++||||+....
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE 63 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc
Confidence 4689999999999999999999988778889999998754322 2 3478999999986543
No 97
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.60 E-value=3e-07 Score=98.43 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=76.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCC---CC-CCcHHHHHHHHhh---CCCCcEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDP---MG-TRCAHIENFLRRE---KPHKHLFF 279 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~P---l~-s~~~~le~~L~~~---~~~k~~Il 279 (534)
+.++.|+||++..... ..+++.+++ +.++.+|+||+|+|+... .. .....+.+.+... -.++|.|+
T Consensus 208 ~i~~vDtPGi~~~a~~---~~~Lg~~~l----~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~Il 280 (390)
T PRK12298 208 SFVVADIPGLIEGASE---GAGLGIRFL----KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWL 280 (390)
T ss_pred EEEEEeCCCccccccc---hhhHHHHHH----HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEE
Confidence 4789999999764431 113444444 568899999999998721 11 0011222323221 13689999
Q ss_pred EEeCCCCCChhhHHHHHHHHhccCC--eEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 280 ILNKVDLVPIWVTQRWVAILSKEYP--TIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 280 VLNKiDLv~~~~~~~wl~~l~~~~p--~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||+||.+.......++.+.+.++ ..+|.+||.++.|++.|++.|.++++
T Consensus 281 VlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 281 VFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred EEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 9999999876555555555544322 24677899999999999999987665
No 98
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.60 E-value=3e-07 Score=102.70 Aligned_cols=61 Identities=26% Similarity=0.317 Sum_probs=48.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCC-CCceeeeEEE--EeCccEEEEeCCCcccCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPV-PGETKVWQYI--TLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~-pgtTk~~~~~--~~~~~i~liDtPGi~~p~ 396 (534)
..++|+++|.|||||||++|+|+++.++.++.. ++||+...+. ..+..+.||||||+....
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSA 180 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccc
Confidence 357899999999999999999999988887775 6666643332 224679999999999764
No 99
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.60 E-value=2.4e-07 Score=97.07 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=77.6
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc----HHHHHHHHh---hCCCCcEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC----AHIENFLRR---EKPHKHLF 278 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~----~~le~~L~~---~~~~k~~I 278 (534)
.+..+.|+||+.....+ .+.+-...++.++.+|++|+|+|+.++..... ..+.+.|.. ...++|.|
T Consensus 205 ~~~~i~D~PGli~~a~~-------~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~I 277 (329)
T TIGR02729 205 RSFVIADIPGLIEGASE-------GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRI 277 (329)
T ss_pred eEEEEEeCCCcccCCcc-------cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEE
Confidence 45678899998643321 12233344566789999999999986521110 112222222 12468999
Q ss_pred EEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 279 FILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 279 lVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||+||+||.+......+.+.+.+.+...+|.+|+.++.|+++|++.|.+.+
T Consensus 278 IV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 278 VVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 999999998776556666666554444567789999999999999887643
No 100
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.59 E-value=4.6e-07 Score=89.93 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=73.5
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhh--hcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEe
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVID--SSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILN 282 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~--nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLN 282 (534)
.....+.|+||.. ++.+.+...+. .+|++++|+|++.++...+..+..++.. .++|+|+|+|
T Consensus 83 ~~~i~liDtpG~~--------------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvN 146 (224)
T cd04165 83 SKLVTFIDLAGHE--------------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVT 146 (224)
T ss_pred CcEEEEEECCCcH--------------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEE
Confidence 3456689999942 12233444443 6899999999998876655555566554 5789999999
Q ss_pred CCCCCChhhHHHHHH----HHhcc----C---------------------CeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 283 KVDLVPIWVTQRWVA----ILSKE----Y---------------------PTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 283 KiDLv~~~~~~~wl~----~l~~~----~---------------------p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|+|+++.......++ .+... . -..+|.+|+.++.|++.|.++|..+
T Consensus 147 K~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 147 KIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred CccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 999987654433333 33210 0 1146778999999999999888754
No 101
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.59 E-value=7.5e-07 Score=83.24 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=73.8
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.|+||... ........+.++|.+++|+|+..+.......+..++.. .++|+++|+||+
T Consensus 61 ~~~~~liDtpG~~~--------------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~ 124 (189)
T cd00881 61 DRRVNFIDTPGHED--------------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKI 124 (189)
T ss_pred CEEEEEEeCCCcHH--------------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECC
Confidence 44567899999531 11233445679999999999998775544444444433 579999999999
Q ss_pred CCCChhhHH---HHH-HHHhcc-------------CCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 285 DLVPIWVTQ---RWV-AILSKE-------------YPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 285 DLv~~~~~~---~wl-~~l~~~-------------~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+..+.... .++ +.+... ....+|.+|++++.|++.|+..|.++++
T Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 125 DRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred CCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 998643222 222 222221 1244678899999999999999887654
No 102
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.58 E-value=3.9e-07 Score=95.74 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=77.4
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHhh---CCCCcEEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRRE---KPHKHLFFIL 281 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~~---~~~k~~IlVL 281 (534)
....+.|+||+.+... ..+.+..+.++.++.+|++|+|+|+.++....+ ..+...|... -.++|.|+|+
T Consensus 206 ~~~~i~D~PGli~ga~-------~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~ 278 (335)
T PRK12299 206 KSFVIADIPGLIEGAS-------EGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVL 278 (335)
T ss_pred cEEEEEeCCCccCCCC-------ccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEE
Confidence 3567899999865332 223344566677889999999999986642111 1122223221 1368999999
Q ss_pred eCCCCCChhhH-HHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhh
Q psy6781 282 NKVDLVPIWVT-QRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLH 332 (534)
Q Consensus 282 NKiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~ 332 (534)
||+||.+.... ....+.+.......+|.+||.++.|+++|++.|.+.+..+
T Consensus 279 NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 279 NKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred ECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 99999865432 2222222223334467889999999999999998776543
No 103
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.57 E-value=3.3e-07 Score=82.66 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=66.3
Q ss_pred EEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCC
Q psy6781 209 IVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVP 288 (534)
Q Consensus 209 l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~ 288 (534)
.+.||||... .....++.+...+.++|++|+|+|+.++.......+...+ .+|.|+|+||+||.+
T Consensus 38 ~~iDt~G~~~----------~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-----~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 38 GAIDTPGEYV----------ENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIF-----VKPVIGLVTKIDLAE 102 (142)
T ss_pred eeecCchhhh----------hhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-----cCCeEEEEEeeccCC
Confidence 3578998521 1122344555568999999999999999876554333221 359999999999975
Q ss_pred hhhHHHHHHH-HhccCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 289 IWVTQRWVAI-LSKEYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 289 ~~~~~~wl~~-l~~~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
........+. +........|.+|++++.|+++|.+.|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 103 ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 3222122222 2222222357789999999999887763
No 104
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.57 E-value=8e-07 Score=85.05 Aligned_cols=110 Identities=19% Similarity=0.122 Sum_probs=72.6
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||.+ .+++..+..+..+|.+++|+|++............+. ...++|+++|+||+
T Consensus 67 ~~~~~i~DtpG~~--------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~--~~~~~~~iiv~NK~ 130 (192)
T cd01889 67 NLQITLVDCPGHA--------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG--EILCKKLIVVLNKI 130 (192)
T ss_pred CceEEEEECCCcH--------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH--HHcCCCEEEEEECc
Confidence 3456789999952 2456677778899999999999875432221111222 22468999999999
Q ss_pred CCCChhh----HHHHHHHHhc------cCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 285 DLVPIWV----TQRWVAILSK------EYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 285 DLv~~~~----~~~wl~~l~~------~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|++.... ...+.+.+.. .....++.+|++++.|+++|++.|....+
T Consensus 131 Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 131 DLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 9985432 2222222221 11244678899999999999999986544
No 105
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.57 E-value=6e-07 Score=98.60 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=75.9
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-----H----HHHHHHHh------
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-----A----HIENFLRR------ 270 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-----~----~le~~L~~------ 270 (534)
.+..+.|+||+..... ..+.+-.+.++.++++|+||+|+|+.++...++ . .|..|...
T Consensus 206 ~~f~laDtPGliegas-------~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~ 278 (500)
T PRK12296 206 TRFTVADVPGLIPGAS-------EGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLG 278 (500)
T ss_pred eEEEEEECCCCccccc-------hhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccch
Confidence 4567899999865332 223333445667899999999999964322221 1 22223210
Q ss_pred --hCCCCcEEEEEeCCCCCChhhHHHHHH-HHhccCCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 271 --EKPHKHLFFILNKVDLVPIWVTQRWVA-ILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 271 --~~~~k~~IlVLNKiDLv~~~~~~~wl~-~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
...++|.|+|+||+||.+......++. .+.. ....+|.+|+.++.|+++|+..|.+++..
T Consensus 279 ~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~-~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 279 LGDLAERPRLVVLNKIDVPDARELAEFVRPELEA-RGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred hhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 124689999999999975543333333 3332 23457888999999999999999877653
No 106
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.56 E-value=5.6e-07 Score=87.43 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=67.8
Q ss_pred ccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCc-EEE
Q psy6781 201 YKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKH-LFF 279 (534)
Q Consensus 201 ~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~-~Il 279 (534)
|.....+..+.||||.+ .+..++...+..+|++++|+|+..........+..++.. .++| +|+
T Consensus 60 ~~~~~~~i~~iDtPG~~--------------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIv 123 (195)
T cd01884 60 YETANRHYAHVDCPGHA--------------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVV 123 (195)
T ss_pred ecCCCeEEEEEECcCHH--------------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEE
Confidence 44456678899999952 356677888999999999999987665544455555543 4566 678
Q ss_pred EEeCCCCCChhhHHH-----HHHHHhc-cCC---eEEeeeccCCCCCh
Q psy6781 280 ILNKVDLVPIWVTQR-----WVAILSK-EYP---TIAFHASMTHPFGK 318 (534)
Q Consensus 280 VLNKiDLv~~~~~~~-----wl~~l~~-~~p---~v~f~~Sa~~~~gi 318 (534)
|+||+|++....... ..+.+.. .+. ..++++|+.++.+.
T Consensus 124 viNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 124 FLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 999999985432222 2222222 221 34677899887763
No 107
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.56 E-value=1e-06 Score=84.83 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=74.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh-hCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR-EKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~-~~~~k~~IlVLNKi 284 (534)
...+.||||+......+ ....+......+.++|++++|+|++++....+ ..+.+++.. ...++|+|+|+||+
T Consensus 90 ~~~i~Dt~G~~~~~~~~------~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~ 163 (204)
T cd01878 90 EVLLTDTVGFIRDLPHQ------LVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKI 163 (204)
T ss_pred eEEEeCCCccccCCCHH------HHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcc
Confidence 67789999985432211 12234445556779999999999998865543 223344443 22468999999999
Q ss_pred CCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 285 DLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|+.+..... ..+.. ....+|.+|++++.|++.+.+.|.+
T Consensus 164 Dl~~~~~~~---~~~~~-~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 164 DLLDDEELE---ERLEA-GRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred ccCChHHHH---HHhhc-CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 998765433 22222 2233677899999999999888764
No 108
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.54 E-value=7.1e-08 Score=99.19 Aligned_cols=61 Identities=31% Similarity=0.456 Sum_probs=50.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE---EEEeCccEEEEeCCCcccCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ---YITLMRRIYLIDCPGVVYDMT 397 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~---~~~~~~~i~liDtPGi~~p~~ 397 (534)
+-.+|++||+||||||||+|+|++.+. .++++|.||.... +-.-+-+|.|+|+|||+....
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas 125 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGAS 125 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcc
Confidence 457899999999999999999999874 8899999997643 333466899999999997663
No 109
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.54 E-value=1.3e-06 Score=77.61 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=77.6
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.|+||+...... ....+..+...+..+|++++|+|+..+.......+...+ ...++|.++|+||+
T Consensus 44 ~~~~~~~Dt~g~~~~~~~-------~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~ 114 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGL-------GREREELARRVLERADLILFVVDADLRADEEEEKLLELL--RERGKPVLLVLNKI 114 (163)
T ss_pred CCcEEEEECCCCCccccc-------hhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH--HhcCCeEEEEEEcc
Confidence 345678999997654321 111234556678899999999999988766543322222 23579999999999
Q ss_pred CCCChhhHHHHHH---HHhccC-CeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 285 DLVPIWVTQRWVA---ILSKEY-PTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 285 DLv~~~~~~~wl~---~l~~~~-p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|+++......+.. ...... ...+|.+|+.++.|+..|++.|.+.
T Consensus 115 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 115 DLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred ccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 9998766655532 122222 2446777889999999998888753
No 110
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.53 E-value=1.3e-07 Score=87.32 Aligned_cols=55 Identities=40% Similarity=0.556 Sum_probs=44.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCccc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVY 394 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~ 394 (534)
+|+++|.||||||||+|+|.+... .+++.|++|+....... ...+.|+||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 689999999999999999998764 46678888877654433 24799999999853
No 111
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.53 E-value=6.6e-07 Score=94.56 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=73.1
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~-~~~~k~~IlVLNK 283 (534)
....+.||+|+.....+.+.. .++.++..+.++|+||+|+|+.+|..... ..+.+++.. ...++|+|+|+||
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie------~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK 310 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVA------AFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNK 310 (351)
T ss_pred ceEEEEecCcccccCCHHHHH------HHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEe
Confidence 357789999984321212211 14556667889999999999998865432 122344443 2247899999999
Q ss_pred CCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 284 VDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+||.+...... +...++ .+|.+|++++.|++.|.+.|.+
T Consensus 311 ~Dl~~~~~v~~----~~~~~~-~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 311 IDLLDEPRIER----LEEGYP-EAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred ecCCChHhHHH----HHhCCC-CEEEEEccCCCCHHHHHHHHHh
Confidence 99987543322 112222 2567899999999999988864
No 112
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.53 E-value=8.6e-07 Score=82.84 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=69.1
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
..+..+.||||.... .......+..+|++|+|+|+.++...........+. ..++|+|+|+||+
T Consensus 66 ~~~~~l~Dt~G~~~~--------------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~--~~~~~iiiv~NK~ 129 (179)
T cd01890 66 EYLLNLIDTPGHVDF--------------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL--ENNLEIIPVINKI 129 (179)
T ss_pred cEEEEEEECCCChhh--------------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH--HcCCCEEEEEECC
Confidence 334568899996421 122344567899999999999876543322222222 2478999999999
Q ss_pred CCCChhh---HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 285 DLVPIWV---TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 285 DLv~~~~---~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+..... ...+.+.+. ..+..+|.+|+.++.|+++|++.|...+
T Consensus 130 Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 130 DLPSADPERVKQQIEDVLG-LDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CCCcCCHHHHHHHHHHHhC-CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 9964321 123322221 1112367899999999999999887543
No 113
>KOG1423|consensus
Probab=98.53 E-value=5.9e-07 Score=91.85 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=90.4
Q ss_pred cccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEE
Q psy6781 200 NYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFF 279 (534)
Q Consensus 200 ~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~Il 279 (534)
-+..+..|.+|.||||+....... .+.+........|.++.++|+|++|+|+.++-...++.+.+.+.. ..+.|-|+
T Consensus 114 i~ts~eTQlvf~DTPGlvs~~~~r--~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~-ys~ips~l 190 (379)
T KOG1423|consen 114 IITSGETQLVFYDTPGLVSKKMHR--RHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEE-YSKIPSIL 190 (379)
T ss_pred EEecCceEEEEecCCcccccchhh--hHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHH-HhcCCcee
Confidence 355677899999999987654322 222344566788999999999999999987666666766666653 45799999
Q ss_pred EEeCCCCCChhh-H----------------HHHHHHHhccCC--------------eEEeeeccCCCCChHHHHHHHHHH
Q psy6781 280 ILNKVDLVPIWV-T----------------QRWVAILSKEYP--------------TIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 280 VLNKiDLv~~~~-~----------------~~wl~~l~~~~p--------------~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|+||+|...... + ..|.+.+.. .| .-+|.+|+++|.|+++|.++|-..
T Consensus 191 vmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~-~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq 269 (379)
T KOG1423|consen 191 VMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTD-VPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ 269 (379)
T ss_pred eccchhcchhhhHHhhhHHhccccccchhhhhHHHHhcc-CCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence 999999765421 1 234443322 11 236889999999999999999866
Q ss_pred hh
Q psy6781 329 SK 330 (534)
Q Consensus 329 ~~ 330 (534)
++
T Consensus 270 a~ 271 (379)
T KOG1423|consen 270 AP 271 (379)
T ss_pred CC
Confidence 55
No 114
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.51 E-value=1e-07 Score=99.45 Aligned_cols=56 Identities=32% Similarity=0.347 Sum_probs=44.5
Q ss_pred EEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--Ee---------------------C----ccEEEEeCCCc
Q psy6781 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TL---------------------M----RRIYLIDCPGV 392 (534)
Q Consensus 340 v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~---------------------~----~~i~liDtPGi 392 (534)
|++||.||||||||+|+|++... .++++|++|..+... .. + -.+.|+||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 58999999999999999999774 889999998765421 11 1 25899999999
Q ss_pred ccCC
Q psy6781 393 VYDM 396 (534)
Q Consensus 393 ~~p~ 396 (534)
+...
T Consensus 80 v~ga 83 (318)
T cd01899 80 VPGA 83 (318)
T ss_pred CCCc
Confidence 8654
No 115
>KOG1490|consensus
Probab=98.50 E-value=1.4e-07 Score=101.36 Aligned_cols=64 Identities=30% Similarity=0.360 Sum_probs=52.9
Q ss_pred cccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCc---cEEEEeCCCcccCCCC
Q psy6781 334 ERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMR---RIYLIDCPGVVYDMTN 398 (534)
Q Consensus 334 ~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~~p~~~ 398 (534)
+....+..++|+|||||||++|.++..++ .|.++|.||+.....+++. ...++|||||..+..+
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plE 231 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE 231 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchh
Confidence 45677889999999999999999998775 8899999999866555553 5789999999987643
No 116
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.50 E-value=3.4e-07 Score=84.73 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=72.4
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCC----CCCcHH---HHHHHHhh------
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPM----GTRCAH---IENFLRRE------ 271 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl----~s~~~~---le~~L~~~------ 271 (534)
.....+.||||+..... ..+.++.+.+..+..+|+|++|+|+.++. ...... +...+...
T Consensus 43 ~~~~~i~DtpG~~~~~~-------~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (176)
T cd01881 43 GARIQVADIPGLIEGAS-------EGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETIL 115 (176)
T ss_pred CCeEEEEeccccchhhh-------cCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHH
Confidence 34557899999742111 12234455667788899999999998874 111111 11122211
Q ss_pred --CCCCcEEEEEeCCCCCChhhHHHHHH-HHhccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 272 --KPHKHLFFILNKVDLVPIWVTQRWVA-ILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 272 --~~~k~~IlVLNKiDLv~~~~~~~wl~-~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
..++|+++|+||+|+........|.. .........++.+|+.++.|++.|++.|..
T Consensus 116 ~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 116 GLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred HHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 13689999999999987765555521 111222334677899999999998887753
No 117
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.45 E-value=1.3e-07 Score=87.46 Aligned_cols=52 Identities=40% Similarity=0.524 Sum_probs=42.2
Q ss_pred EEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e--CccEEEEeCCCccc
Q psy6781 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L--MRRIYLIDCPGVVY 394 (534)
Q Consensus 342 vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~--~~~i~liDtPGi~~ 394 (534)
++|.+|||||||+|+|.+... .+++.+++|....... . +..+.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence 589999999999999999876 6788899987654322 2 46789999999853
No 118
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.44 E-value=1.6e-07 Score=88.35 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=68.2
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
..+..+.|+||+...... ....++..+.. .-...|+|+.|+||... .++..+...+.+ .++|+|+|+||+
T Consensus 46 ~~~~~lvDlPG~ysl~~~-----s~ee~v~~~~l-~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e--~g~P~vvvlN~~ 115 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSK-----SEEERVARDYL-LSEKPDLIIVVVDATNL--ERNLYLTLQLLE--LGIPVVVVLNKM 115 (156)
T ss_dssp TEEEEEEE----SSSSSS-----SHHHHHHHHHH-HHTSSSEEEEEEEGGGH--HHHHHHHHHHHH--TTSSEEEEEETH
T ss_pred CceEEEEECCCcccCCCC-----CcHHHHHHHHH-hhcCCCEEEEECCCCCH--HHHHHHHHHHHH--cCCCEEEEEeCH
Confidence 467789999998653321 12334433332 25789999999999863 344444444443 589999999999
Q ss_pred CCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHH
Q psy6781 285 DLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLL 325 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L 325 (534)
|++......--.+.|++.....++.+|+.++.|+++|.+.+
T Consensus 116 D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 116 DEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred HHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 99876432222333443333446778999999999988754
No 119
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.44 E-value=1.2e-06 Score=95.61 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=74.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||++++.. ......++..+..+.++|++|+|+|+.+|....+. ..+.. ..++|+|+|+||+|
T Consensus 263 ~~i~l~DT~G~~~~~~------~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~---~~l~~-~~~~piiiV~NK~D 332 (449)
T PRK05291 263 IPLRLIDTAGIRETDD------EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDD---EILEE-LKDKPVIVVLNKAD 332 (449)
T ss_pred eEEEEEeCCCCCCCcc------HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHH---HHHHh-cCCCCcEEEEEhhh
Confidence 3467889999875322 12334456667789999999999999988754322 22222 35789999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|.+..... .......+.+|++++.|++.|++.|.+.+
T Consensus 333 L~~~~~~~-------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 333 LTGEIDLE-------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ccccchhh-------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 98654322 11123356789999999999999998654
No 120
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.44 E-value=1.3e-06 Score=81.57 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=71.0
Q ss_pred EecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCCh
Q psy6781 210 VRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPI 289 (534)
Q Consensus 210 ~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~ 289 (534)
+.|+||..... .+..+++...+..+|++|+|+|+.++.......+.++ ..++|+++|+||+||.+.
T Consensus 41 ~iDtpG~~~~~----------~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 41 DIDTPGEYFSH----------PRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred cccCCccccCC----------HHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCcc
Confidence 47999964322 2344556667889999999999998765443333222 246889999999999653
Q ss_pred hhHHHHHHHHhccC-CeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 290 WVTQRWVAILSKEY-PTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 290 ~~~~~wl~~l~~~~-p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
. ...+.+.+.+.. ...+|.+|+.++.|+++|.+.|.+...
T Consensus 107 ~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 107 D-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred c-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 2 233333332322 124677899999999999999987654
No 121
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.44 E-value=3.1e-07 Score=84.56 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=58.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--Ee----CccEEEEeCCCcccCCCCCcchHHHHHcc---
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TL----MRRIYLIDCPGVVYDMTNVETDTEKVLRG--- 409 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~----~~~i~liDtPGi~~p~~~~~~~~e~vL~g--- 409 (534)
.|+++|.+|||||||+|+|++.... ....+++|...... .. ...+.++||||..... ......+..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~----~~~~~~~~~~d~ 76 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT----NMRARGASLTDI 76 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH----HHHHHHHhhcCE
Confidence 4899999999999999999986643 23445666553322 22 3478999999974211 011111111
Q ss_pred ---cccccc-CCCchhhHHHHHHhhccceeeehcCCCCC
Q psy6781 410 ---VVRVEN-IDDPVQYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 410 ---vv~v~~-i~~~~~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
++.... ...........+.....+.+.+.||+|..
T Consensus 77 il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 77 AILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 111111 10111122334555667788899999865
No 122
>KOG1491|consensus
Probab=98.43 E-value=2.3e-07 Score=95.95 Aligned_cols=73 Identities=29% Similarity=0.325 Sum_probs=56.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe--------------------CccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL--------------------MRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~--------------------~~~i~liDtPGi~~p 395 (534)
..+++||||+|||||||++|+|+..... .++.|.+|.++..... +-.+.++|..|++..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 5678999999999999999999998875 8999999987643221 235889999999987
Q ss_pred CCCCcchHHHHHcc
Q psy6781 396 MTNVETDTEKVLRG 409 (534)
Q Consensus 396 ~~~~~~~~e~vL~g 409 (534)
.+.+..-.+..|.+
T Consensus 98 As~G~GLGN~FLs~ 111 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSH 111 (391)
T ss_pred cccCcCchHHHHHh
Confidence 76665544554433
No 123
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.43 E-value=1.9e-07 Score=84.97 Aligned_cols=103 Identities=26% Similarity=0.304 Sum_probs=61.4
Q ss_pred EEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEe-CccEEEEeCCCcccCCCC-Ccch-HHHHHc--cccc--
Q psy6781 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITL-MRRIYLIDCPGVVYDMTN-VETD-TEKVLR--GVVR-- 412 (534)
Q Consensus 342 vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~-~~~i~liDtPGi~~p~~~-~~~~-~e~vL~--gvv~-- 412 (534)
++|.+|||||||+|+|++.. ..++..||+|.+.+. +.+ +..+.|+||||+...... .+.. ....+. ++..
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 58999999999999999876 577888999887543 222 357899999998643210 1100 111221 1111
Q ss_pred -cccCCCchh--hHHHHHHhhccceeeehcCCCCCC
Q psy6781 413 -VENIDDPVQ--YIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 413 -v~~i~~~~~--~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
+-...++.. .....+.....+.+.+.||+|...
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 80 NVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred EEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 111112221 122223445678888999998643
No 124
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.40 E-value=3.5e-07 Score=81.35 Aligned_cols=104 Identities=28% Similarity=0.292 Sum_probs=63.7
Q ss_pred EEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe----CccEEEEeCCCcccCCCCCcc---hHHHHHccc----
Q psy6781 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL----MRRIYLIDCPGVVYDMTNVET---DTEKVLRGV---- 410 (534)
Q Consensus 342 vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~----~~~i~liDtPGi~~p~~~~~~---~~e~vL~gv---- 410 (534)
++|.+|+|||||+|+|.+......+..+++|........ ...+.++||||+......... .....+..+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999999887777888888876544332 458999999998865521111 111122221
Q ss_pred --cccccCCCc-hhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 411 --VRVENIDDP-VQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 411 --v~v~~i~~~-~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
+........ ...+...+.....+.+.+.+|+|...
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 111111111 11112233445667788899998764
No 125
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.39 E-value=6e-07 Score=89.49 Aligned_cols=57 Identities=30% Similarity=0.435 Sum_probs=45.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE---EeCccEEEEeCCCcccCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI---TLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~---~~~~~i~liDtPGi~~p~ 396 (534)
+|+++|+||||||||+|+|++.. ..++..|++|...... ..+..+.++||||+....
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~ 61 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGA 61 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCccccc
Confidence 58999999999999999999876 3578889998764432 234578999999987543
No 126
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.38 E-value=4.7e-06 Score=79.14 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=77.2
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
.+..+.||||+.......-. ......+........+.++++++|+|+..+.......+.+++.. .++|+++|+||+|
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~D 146 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEE-KEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKAD 146 (196)
T ss_pred CeEEEeCCCCCCCcCCCchH-HHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcc
Confidence 45778999996432110000 00112233333455567789999999998876554455666653 4688999999999
Q ss_pred CCChhhHHHHH----HHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 286 LVPIWVTQRWV----AILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 286 Lv~~~~~~~wl----~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+.+........ ..+... ...++.+|++++.|++++.+.|.++++
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~-~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 147 KLKKGERKKQLKKVRKALKFG-DDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCHHHHHHHHHHHHHHHHhc-CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 98765433322 222221 334567899999999999999987654
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.38 E-value=3e-06 Score=78.21 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=55.4
Q ss_pred hcCEEEEEEeCCCCCCCCcHH---HHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChH
Q psy6781 243 SSDVVVYVLDVRDPMGTRCAH---IENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKG 319 (534)
Q Consensus 243 nsDvVL~VvDAR~Pl~s~~~~---le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~ 319 (534)
.+|++|+|+|+.++....... +...++....++|+|+|+||+|+........ ...+.......+|.+|++++.|++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEEVLKISTLTEEGVD 157 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhhccCceEEEEecccCCHH
Confidence 369999999998775421112 2223333224799999999999986543332 222322223346788999999999
Q ss_pred HHHHHHHH
Q psy6781 320 SIINLLRQ 327 (534)
Q Consensus 320 ~Li~~L~~ 327 (534)
+|++.|..
T Consensus 158 ~l~~~l~~ 165 (168)
T cd01897 158 EVKNKACE 165 (168)
T ss_pred HHHHHHHH
Confidence 99988764
No 128
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.38 E-value=3.3e-06 Score=92.27 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=72.8
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCC-CCCcHHHHHHHHhhCCC-CcEEEEEe
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPM-GTRCAHIENFLRREKPH-KHLFFILN 282 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl-~s~~~~le~~L~~~~~~-k~~IlVLN 282 (534)
..+..+.|+||. ..+.+.+...+..+|++++|+||..+. .... .+.+......+ +++|+|+|
T Consensus 116 ~~~i~~IDtPGH--------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT--~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 116 KRHVSFVDCPGH--------------DILMATMLNGAAVMDAALLLIAANESCPQPQT--SEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred cceEeeeeCCCH--------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhh--HHHHHHHHHcCCCcEEEEEe
Confidence 346789999992 245667778888999999999999742 2211 11111111223 45789999
Q ss_pred CCCCCChhhHHHHHHHHhc---c---CCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 283 KVDLVPIWVTQRWVAILSK---E---YPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 283 KiDLv~~~~~~~wl~~l~~---~---~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
|+||++........+.+.+ . ....+|++|+.++.|++.|++.|.+.++.
T Consensus 180 KiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 180 KIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred cccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 9999975433222222221 1 12457889999999999999999976654
No 129
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.37 E-value=4.2e-07 Score=96.22 Aligned_cols=62 Identities=27% Similarity=0.239 Sum_probs=49.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--Ee-C-----------------ccEEEEeCCCcccCCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TL-M-----------------RRIYLIDCPGVVYDMT 397 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~-~-----------------~~i~liDtPGi~~p~~ 397 (534)
+++|+||+||||||||+|+|++.....+++.|.+|..+... .. + ..+.++|.||++....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 68999999999999999999998866889999998765432 21 1 2589999999997654
Q ss_pred CC
Q psy6781 398 NV 399 (534)
Q Consensus 398 ~~ 399 (534)
.+
T Consensus 83 ~g 84 (368)
T TIGR00092 83 KG 84 (368)
T ss_pred cc
Confidence 33
No 130
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.36 E-value=7e-07 Score=81.50 Aligned_cols=56 Identities=27% Similarity=0.371 Sum_probs=39.5
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceee--CCCCCceeeeEEE--Ee--CccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKT--APVPGETKVWQYI--TL--MRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v--~~~pgtTk~~~~~--~~--~~~i~liDtPGi~ 393 (534)
+.|+++|.||||||||+|+|++...... ...+++|....+. .+ ...+.++||||..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 3689999999999999999997543222 2345667554322 22 3478999999964
No 131
>PRK11058 GTPase HflX; Provisional
Probab=98.36 E-value=3.6e-06 Score=91.23 Aligned_cols=115 Identities=11% Similarity=0.131 Sum_probs=73.8
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH-HHHHHHHh-hCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA-HIENFLRR-EKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~-~le~~L~~-~~~~k~~IlVLNKi 284 (534)
..++.||+|+.....+.+. . .+....+.+.++|++|+|+|+.+|....+. .+.+++.. ...++|+|+|+||+
T Consensus 246 ~~~l~DTaG~~r~lp~~lv-----e-~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKi 319 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLV-----A-AFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKI 319 (426)
T ss_pred eEEEEecCcccccCCHHHH-----H-HHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcc
Confidence 5678999998432111121 1 134456678899999999999988654332 12344443 23478999999999
Q ss_pred CCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 285 DLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||.+.... ........++. .+.+|++++.|++.|++.|...+.
T Consensus 320 DL~~~~~~--~~~~~~~~~~~-~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 320 DMLDDFEP--RIDRDEENKPI-RVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred cCCCchhH--HHHHHhcCCCc-eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 99864221 11111222332 356899999999999999987653
No 132
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.36 E-value=5.9e-07 Score=88.10 Aligned_cols=59 Identities=27% Similarity=0.353 Sum_probs=39.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCC-CCCceeeeEEEE---eCccEEEEeCCCcccCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAP-VPGETKVWQYIT---LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~-~pgtTk~~~~~~---~~~~i~liDtPGi~~p~ 396 (534)
++|.++|.+|+||||++|+|++...+.++. ....|...+... -+..+.+|||||+..+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCc
Confidence 479999999999999999999998877653 234455443332 25689999999997665
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.35 E-value=8.5e-07 Score=78.85 Aligned_cols=55 Identities=35% Similarity=0.491 Sum_probs=44.2
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+|+|||||+|+|.+.. ...+..+++|.+... +..+ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 589999999999999999999988 677778888877543 2333 357889999943
No 134
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.35 E-value=2e-07 Score=90.86 Aligned_cols=55 Identities=24% Similarity=0.179 Sum_probs=38.5
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeC------------------------------CCCCceeeeEEEE---eCccEE
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTA------------------------------PVPGETKVWQYIT---LMRRIY 385 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~------------------------------~~pgtTk~~~~~~---~~~~i~ 385 (534)
+|+++|.+|+|||||+|+|+....+.++ ..+|+|.+..... .+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4799999999999999999754322110 1267777643332 245799
Q ss_pred EEeCCCcc
Q psy6781 386 LIDCPGVV 393 (534)
Q Consensus 386 liDtPGi~ 393 (534)
|+||||..
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999974
No 135
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.34 E-value=8e-07 Score=90.65 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=72.4
Q ss_pred EEEEEecCCCchhHHHHhhhCC-----CceeeC------------CCCCceeeeEEE---EeCccEEEEeCCCcccCCCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNK-----KVCKTA------------PVPGETKVWQYI---TLMRRIYLIDCPGVVYDMTN 398 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~-----~~~~v~------------~~pgtTk~~~~~---~~~~~i~liDtPGi~~p~~~ 398 (534)
+|+++|.+|+|||||+|+|+.. ....+. ...|+|.+.... +.+.++.|+||||.....
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 4899999999999999999631 111121 234666553322 235589999999976322
Q ss_pred CcchHHHHHccc------cc-cccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 399 VETDTEKVLRGV------VR-VENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 399 ~~~~~e~vL~gv------v~-v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
......+..+ +. .+.+......+...+.....+.+..+||+|... +.+..++.+....+.
T Consensus 79 --~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 79 --IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred --HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 1222233222 11 122222233445556666778889999999764 677788888877764
No 136
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.34 E-value=3.1e-06 Score=77.39 Aligned_cols=106 Identities=17% Similarity=0.258 Sum_probs=67.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh---hCCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR---EKPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~---~~~~k~~IlVL 281 (534)
...+.|+||... .+.+|. ..+.++|.+|+|+|+.++..... ..+..++.. ...++|+++|+
T Consensus 46 ~~~l~Dt~G~~~-----------~~~~~~---~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 111 (162)
T cd04157 46 SFTAFDMSGQGK-----------YRGLWE---HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFA 111 (162)
T ss_pred EEEEEECCCCHh-----------hHHHHH---HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEE
Confidence 455789999521 122333 34679999999999997743211 123333321 12479999999
Q ss_pred eCCCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 282 NKVDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
||+|+.+......+...+.- ..+..+|.+|++++.|++++++.|.
T Consensus 112 NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 112 NKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 99999764322333333221 1234468899999999999998875
No 137
>PRK13768 GTPase; Provisional
Probab=98.34 E-value=2.3e-06 Score=86.43 Aligned_cols=119 Identities=15% Similarity=0.051 Sum_probs=75.6
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhh--cCEEEEEEeCCCCCCCCcHHHHHHHH---hhCCCCcEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDS--SDVVVYVLDVRDPMGTRCAHIENFLR---REKPHKHLFFI 280 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~n--sDvVL~VvDAR~Pl~s~~~~le~~L~---~~~~~k~~IlV 280 (534)
...++.|+||.... ++ .+..|..+.+.+.. .|+|++|+|++.+....+.....++. ....++|+|+|
T Consensus 97 ~~~~~~d~~g~~~~-----~~---~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v 168 (253)
T PRK13768 97 ADYVLVDTPGQMEL-----FA---FRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPV 168 (253)
T ss_pred CCEEEEeCCcHHHH-----Hh---hhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 35789999996432 11 12334444444444 89999999998754443333333332 11357999999
Q ss_pred EeCCCCCChhhHHHHHHHHh----------------------------ccCC-eEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 281 LNKVDLVPIWVTQRWVAILS----------------------------KEYP-TIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~----------------------------~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
+||+|+++........+++. +..+ ..+|.+|+.++.|+++|++.|.++++.
T Consensus 169 ~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 169 LNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred EEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 99999987644333222222 1122 345778899999999999999987765
Q ss_pred h
Q psy6781 332 H 332 (534)
Q Consensus 332 ~ 332 (534)
+
T Consensus 249 ~ 249 (253)
T PRK13768 249 G 249 (253)
T ss_pred C
Confidence 4
No 138
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.33 E-value=6.2e-07 Score=90.69 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=66.4
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC----ceeeeEEEEeCccEEEEeCCCcccCCCCCcchHH-HHHcc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG----ETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTE-KVLRG 409 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg----tTk~~~~~~~~~~i~liDtPGi~~p~~~~~~~~e-~vL~g 409 (534)
...+.|.++|.+|+|||||||+|.......++.++- +|..++.+.. ..+.|+||||+-.... .+.+.. .++.-
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~-~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKD-KDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchh-hhHHHHHHHHHH
Confidence 467899999999999999999999766666665553 3445555544 7899999999987552 121111 11110
Q ss_pred ccccc-----------cCCCchhhHHHHHHhhc-cceeeehcCCC
Q psy6781 410 VVRVE-----------NIDDPVQYIDAVLERIK-KVHLVKTYGID 442 (534)
Q Consensus 410 vv~v~-----------~i~~~~~~i~~iL~r~~-k~~l~~~ykId 442 (534)
.-+.+ .+...++.+.+++..+. ++.|.++++.|
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D 159 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQAD 159 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhh
Confidence 00111 12234555666655554 77788877765
No 139
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.33 E-value=1.4e-06 Score=81.35 Aligned_cols=117 Identities=20% Similarity=0.086 Sum_probs=62.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCce--------e------eCCCCCceeeeEEEEe--------CccEEEEeCCCcccCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVC--------K------TAPVPGETKVWQYITL--------MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~--------~------v~~~pgtTk~~~~~~~--------~~~i~liDtPGi~~p~ 396 (534)
+|+++|.+|||||||+|+|++...+ . +....|+|...+.+.+ ...+.|+||||.....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 5899999999999999999874211 0 1112355543222111 2357899999986432
Q ss_pred CCCcchHHHHHccccccc---cCCCch--hh--HHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhC
Q psy6781 397 TNVETDTEKVLRGVVRVE---NIDDPV--QY--IDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWG 459 (534)
Q Consensus 397 ~~~~~~~e~vL~gvv~v~---~i~~~~--~~--i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g 459 (534)
......+.++..+- ...+.. +. ....+.....+.+.+.||+|... ...+.++.+++..|
T Consensus 82 ----~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~ 148 (179)
T cd01890 82 ----YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLG 148 (179)
T ss_pred ----HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhC
Confidence 12222333221111 111110 11 11122234456788999999753 34455666666554
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.32 E-value=1.3e-06 Score=84.09 Aligned_cols=59 Identities=29% Similarity=0.336 Sum_probs=43.5
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEe-C-ccEEEEeCCCccc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITL-M-RRIYLIDCPGVVY 394 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~-~-~~i~liDtPGi~~ 394 (534)
+..++|+++|.+|||||||+|+|++... .+...+++|..... +.. + ..+.++||||+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIR 101 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCcccc
Confidence 3457999999999999999999999763 44555666654332 222 2 2789999999864
No 141
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.31 E-value=1.3e-06 Score=81.69 Aligned_cols=49 Identities=24% Similarity=0.458 Sum_probs=33.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcccCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~ 396 (534)
+|+++|.||||||||+|+|.+.... ...|....+ ... .++||||.....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~~~v~~---~~~-~~iDtpG~~~~~ 51 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----ARKTQAVEF---NDK-GDIDTPGEYFSH 51 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----CccceEEEE---CCC-CcccCCccccCC
Confidence 6899999999999999999986531 112222222 111 279999986554
No 142
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.30 E-value=7.6e-07 Score=86.49 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=61.3
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC------ce---------eeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK------VC---------KTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTN 398 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~------~~---------~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~ 398 (534)
.++|+++|.+|+|||||+++|+... .. ......|+|.+...... +.++.|+||||...-.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~-- 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYI-- 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHH--
Confidence 4789999999999999999998531 00 01114677766543333 4578999999975211
Q ss_pred CcchHHHHHccc------ccc-ccCCCchhhHHHHHHhhccc-eeeehcCCCCCC
Q psy6781 399 VETDTEKVLRGV------VRV-ENIDDPVQYIDAVLERIKKV-HLVKTYGIDEWE 445 (534)
Q Consensus 399 ~~~~~e~vL~gv------v~v-~~i~~~~~~i~~iL~r~~k~-~l~~~ykId~~~ 445 (534)
......+..+ +.. +.+......+..++.....+ .+..+||+|...
T Consensus 80 --~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 80 --KNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred --HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 1111222211 111 12222233344456666655 567889999763
No 143
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.28 E-value=7.6e-06 Score=88.32 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=72.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCC-CCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPM-GTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl-~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.+..+.||||. ..+...+...+.++|++|+|+|++.|. .........++.. ...+++|+|+||+
T Consensus 85 ~~i~liDtPG~--------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i~~iiVVlNK~ 149 (411)
T PRK04000 85 RRVSFVDAPGH--------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGIKNIVIVQNKI 149 (411)
T ss_pred cEEEEEECCCH--------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEEee
Confidence 35678899992 234556777788999999999999875 2322222233322 2234689999999
Q ss_pred CCCChhhHH----HHHHHHhccC--CeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 285 DLVPIWVTQ----RWVAILSKEY--PTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 285 DLv~~~~~~----~wl~~l~~~~--p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
||++..... .....+.... ...+|.+|+.++.|++.|++.|.+.++.
T Consensus 150 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 150 DLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 998754321 1222222111 2346788999999999999999886553
No 144
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.28 E-value=1.1e-06 Score=94.86 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=44.7
Q ss_pred cccceEEEEEecCCCchhHHHHhhhCCCceee------------------------------CCCCCceeeeEEEEe---
Q psy6781 334 ERKQISVGFIGYPNVGKSSIINALRNKKVCKT------------------------------APVPGETKVWQYITL--- 380 (534)
Q Consensus 334 ~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v------------------------------~~~pgtTk~~~~~~~--- 380 (534)
.++.++|+++|.+|+|||||+|+|+....+.+ ...+|+|.+.....+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 35689999999999999999999984322111 115899988665444
Q ss_pred CccEEEEeCCCcc
Q psy6781 381 MRRIYLIDCPGVV 393 (534)
Q Consensus 381 ~~~i~liDtPGi~ 393 (534)
...+.|+||||..
T Consensus 83 ~~~i~liDtpG~~ 95 (425)
T PRK12317 83 KYYFTIVDCPGHR 95 (425)
T ss_pred CeEEEEEECCCcc
Confidence 4579999999963
No 145
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.28 E-value=1.3e-05 Score=73.73 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=67.1
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||... + ..+|. ..+..+|++++|+|+.++..........++.. .++|+++|+||+|
T Consensus 50 ~~~~iiDtpG~~~-----~------~~~~~---~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~D 113 (168)
T cd01887 50 PGITFIDTPGHEA-----F------TNMRA---RGASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKID 113 (168)
T ss_pred ceEEEEeCCCcHH-----H------HHHHH---HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEcee
Confidence 3566899999521 1 11222 24568999999999987653222222233432 5799999999999
Q ss_pred CCChh--hHHHHHHHHhcc------CCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 286 LVPIW--VTQRWVAILSKE------YPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 286 Lv~~~--~~~~wl~~l~~~------~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+.... .....+..+... ....++.+|+.++.|+.+|.+.|.+..
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 114 KPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred cccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 97532 122222222111 123467889999999999999887643
No 146
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.28 E-value=4.4e-07 Score=86.82 Aligned_cols=56 Identities=29% Similarity=0.443 Sum_probs=39.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCC------CceeeCCCCCceeeeEEE--Ee---------------CccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNK------KVCKTAPVPGETKVWQYI--TL---------------MRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~------~~~~v~~~pgtTk~~~~~--~~---------------~~~i~liDtPGi~ 393 (534)
++|+++|.+|+|||||+|+|++. .....+..+|+|....+. .+ ...+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 47999999999999999999973 112223356777653221 11 3478999999974
No 147
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.27 E-value=2.1e-06 Score=80.26 Aligned_cols=103 Identities=19% Similarity=0.118 Sum_probs=57.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeC---------------CCCCceeeeEEEEe---CccEEEEeCCCcccCCCCCc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTA---------------PVPGETKVWQYITL---MRRIYLIDCPGVVYDMTNVE 400 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~---------------~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~~~ 400 (534)
+|+++|.+|+|||||+|+|.+....... ..+|+|........ ...+.|+||||.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 4799999999999999999876543221 12344544332222 3478999999975322
Q ss_pred chHHHHHccc------ccccc-CCCchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 401 TDTEKVLRGV------VRVEN-IDDPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 401 ~~~e~vL~gv------v~v~~-i~~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
......+..+ ++... ...........+.....+.+.+.+|+|...
T Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 77 SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 1122222221 11111 111111222334445677888999999764
No 148
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.27 E-value=4.2e-06 Score=76.60 Aligned_cols=107 Identities=18% Similarity=0.215 Sum_probs=65.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCC--cHHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTR--CAHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~--~~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|++|... -..+| ...+.++|++|+|+|+.++.... ...+.+.+.. ...+.|+++|+||
T Consensus 45 ~l~i~D~~G~~~-----------~~~~~---~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 110 (160)
T cd04156 45 SLTVWDVGGQEK-----------MRTVW---KCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANK 110 (160)
T ss_pred EEEEEECCCCHh-----------HHHHH---HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEEC
Confidence 456789998421 11222 23467899999999999875221 1122233322 1257899999999
Q ss_pred CCCCChhhHHHHHHHHh-----ccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 284 VDLVPIWVTQRWVAILS-----KEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~-----~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+|+............+. ......++.+||+++.|++++++.|.+
T Consensus 111 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 111 QDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 99964322222222221 111234677899999999999888753
No 149
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.26 E-value=6.6e-06 Score=77.86 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=65.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHH----HHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWG----ELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~----el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLN 282 (534)
+..+.||||+...... ...+..|. ......+.+|.+|+|+|++.++...+..+.+++.. .++|+++|+|
T Consensus 65 ~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~n 137 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVS-----KEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLT 137 (179)
T ss_pred cEEEEeCCCCccccCC-----hhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEE
Confidence 5778999997543211 01111222 22233346789999999998877665555555543 4789999999
Q ss_pred CCCCCChhhH----HHHHHHHhccC-CeEEeeeccCCCCCh
Q psy6781 283 KVDLVPIWVT----QRWVAILSKEY-PTIAFHASMTHPFGK 318 (534)
Q Consensus 283 KiDLv~~~~~----~~wl~~l~~~~-p~v~f~~Sa~~~~gi 318 (534)
|+|+.+.... ..+.+.+.... ..-+|.+|++++.|+
T Consensus 138 K~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 138 KADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred CcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence 9999865422 33333343322 235788899998885
No 150
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.26 E-value=5.5e-06 Score=75.77 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=68.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---h-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---R-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~-~~~~k~~IlVLN 282 (534)
+..+.|+||.. +........+.++|++++|+|+.+|.+. ..+..++. . ...+.|+++|+|
T Consensus 50 ~l~~~D~~G~~--------------~~~~~~~~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~n 113 (161)
T cd01861 50 RLQLWDTAGQE--------------RFRSLIPSYIRDSSVAVVVYDITNRQSF--DNTDKWIDDVRDERGNDVIIVLVGN 113 (161)
T ss_pred EEEEEECCCcH--------------HHHHHHHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 45678999831 1112233456799999999999876443 23333332 2 223589999999
Q ss_pred CCCCCCh-hhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 283 KVDLVPI-WVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 283 KiDLv~~-~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|+|+... .....+...+.+.+....+.+|+.++.|+++|.+.|.+
T Consensus 114 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 114 KTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred ChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 9999533 22334444444444455778899999999999988865
No 151
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.25 E-value=5.6e-06 Score=89.61 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=72.7
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCC----cHHHHHHHHhh---CCCCcE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTR----CAHIENFLRRE---KPHKHL 277 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~----~~~le~~L~~~---~~~k~~ 277 (534)
..+..+.|+||+..... ..+.+..+..+-++.+|++|+|+|+.++.... ...+.+.|... ..++|.
T Consensus 205 ~~~~~laD~PGliega~-------~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~ 277 (424)
T PRK12297 205 GRSFVMADIPGLIEGAS-------EGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQ 277 (424)
T ss_pred CceEEEEECCCCccccc-------ccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcE
Confidence 34567889999864322 12233444556678999999999996432111 11222333321 147899
Q ss_pred EEEEeCCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 278 FFILNKVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 278 IlVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|||+||+||.... ....+.+.+ ...+|.+|+.++.|+++|++.|.+++.
T Consensus 278 IVV~NK~DL~~~~e~l~~l~~~l----~~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 278 IVVANKMDLPEAEENLEEFKEKL----GPKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHh----CCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999985332 222333332 234677899999999999999987654
No 152
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.25 E-value=2e-06 Score=77.15 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=38.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceee-CCCCCceeeeEEEEe---CccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v-~~~pgtTk~~~~~~~---~~~i~liDtPGi~ 393 (534)
++|+++|.||||||||+|+|.+...... .+..|.+.....+.. ...+.++||||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 4689999999999999999998765443 233333333333332 2357899999974
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=98.24 E-value=1.8e-05 Score=75.79 Aligned_cols=119 Identities=18% Similarity=0.069 Sum_probs=70.0
Q ss_pred eeEEecCCCCcCCCc--hhhhhhhhHHHHHHHHHH-HhhhcCEEEEEEeCCCCCCC-----------CcHHHHHHHHhhC
Q psy6781 207 FDIVRDNGGVTDAPR--DWVMAAGQSKRIWGELYK-VIDSSDVVVYVLDVRDPMGT-----------RCAHIENFLRREK 272 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~--~~l~~a~lskr~~~el~k-vI~nsDvVL~VvDAR~Pl~s-----------~~~~le~~L~~~~ 272 (534)
...+.||||+..... ... ...-+.++...+. .++.+|+|++|+|+...... .+..+..++..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 128 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEV--QEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-- 128 (201)
T ss_pred ceEEEeCCccccccccCHHH--HHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--
Confidence 356789999632110 000 0111223333333 56788999999998643211 11223344432
Q ss_pred CCCcEEEEEeCCCCCChh--hHHHHHHHHhc--cCC---eEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 273 PHKHLFFILNKVDLVPIW--VTQRWVAILSK--EYP---TIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 273 ~~k~~IlVLNKiDLv~~~--~~~~wl~~l~~--~~p---~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
.++|+++|+||+||.+.. ....+.+.+.. .+. ..+|.+||+++ |+++|++.|.+.++
T Consensus 129 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred cCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 579999999999997643 33444444432 110 13678899999 99999998876543
No 154
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.24 E-value=5.7e-06 Score=76.24 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=66.9
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVL 281 (534)
.....+.|+||... + ..+| ...+..+|++++|+|+.++..... ..+..++.. ...+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~~-----~------~~~~---~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQES-----L------RSLW---DKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCChh-----h------HHHH---HHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 44566789999531 1 1122 345779999999999987632110 122222221 12478999999
Q ss_pred eCCCCCChh---hHHHHHHHHhc---cCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 282 NKVDLVPIW---VTQRWVAILSK---EYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 282 NKiDLv~~~---~~~~wl~~l~~---~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
||+|+.+.. ....++..+.. .....++.+|++++.|++++++.|.
T Consensus 115 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 115 NKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred EccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 999996543 23333332211 1224577889999999999988774
No 155
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.23 E-value=2.1e-05 Score=71.28 Aligned_cols=119 Identities=14% Similarity=0.045 Sum_probs=74.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
+..+.|+||+...... .-....-..++.......++++.+++|+|+..+.......+.+++.. .+.|+++|+||+|+
T Consensus 46 ~~~~~D~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~ 122 (170)
T cd01876 46 KFRLVDLPGYGYAKVS-KEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADK 122 (170)
T ss_pred eEEEecCCCccccccC-HHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhc
Confidence 6778999997543110 00000112233344455567899999999987765544455666654 35889999999999
Q ss_pred CChhhHHHHHHH----Hh-ccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 287 VPIWVTQRWVAI----LS-KEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 287 v~~~~~~~wl~~----l~-~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
............ +. ......++.+|++++.|+.++++.|.++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 123 LKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 765433322222 22 1222345678999999999999988754
No 156
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.22 E-value=2.4e-06 Score=79.36 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=46.0
Q ss_pred HHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 322 INLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 322 i~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
+..++++.+. .+.++|+++|.+|||||||+|+|.+.......+..|.+..... ..+..+.++||||..
T Consensus 2 ~~~~~~~~~~---~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~-~~~~~~~~~D~~G~~ 69 (173)
T cd04155 2 LSLLRKLRKS---SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQ-SDGFKLNVWDIGGQR 69 (173)
T ss_pred hhHHHHhhcc---CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEE-ECCEEEEEEECCCCH
Confidence 3445544332 3478999999999999999999998755444555554432211 124578899999964
No 157
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.22 E-value=2e-06 Score=79.83 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=25.8
Q ss_pred EEEEecCCCchhHHHHhhhCCCceeeCCCCC
Q psy6781 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPG 370 (534)
Q Consensus 340 v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg 370 (534)
|+|+|..++|||||||+|.|.....++..|.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~ 31 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPC 31 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSST
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccccc
Confidence 6899999999999999999988766665554
No 158
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.22 E-value=3.9e-06 Score=94.52 Aligned_cols=112 Identities=27% Similarity=0.258 Sum_probs=66.4
Q ss_pred ecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCCCCCcchHHHHH----c--c-----
Q psy6781 344 GYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDMTNVETDTEKVL----R--G----- 409 (534)
Q Consensus 344 G~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~~~~~~~~e~vL----~--g----- 409 (534)
|.||||||||+|+|++.. ..+++.||+|.+..... .+..+.++||||..... ..+..+.+. . +
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~--~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLT--TFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccC--ccchHHHHHHHHHhhcCCCEEE
Confidence 899999999999999976 48999999998764332 24578999999987543 111111111 1 1
Q ss_pred -ccccccCCCchhhHHHHHHhhccceeeehcCCCCCCC--HHHHHHHHHHHhC
Q psy6781 410 -VVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWED--TEDFLKKLAFKWG 459 (534)
Q Consensus 410 -vv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d--~~efLe~la~k~g 459 (534)
+++...+.. ..+....+.....+.+.+.||+|..+. ...-.+.+++..|
T Consensus 78 ~VvDat~ler-~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg 129 (591)
T TIGR00437 78 NVVDASNLER-NLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLG 129 (591)
T ss_pred EEecCCcchh-hHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcC
Confidence 111111111 111122233456778888999986421 1112456666655
No 159
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.22 E-value=1.7e-05 Score=85.32 Aligned_cols=109 Identities=15% Similarity=0.105 Sum_probs=70.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCC-CCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPM-GTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl-~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
...+.|+||. .++...+...+..+|++|+|+||+.+. .........++.. ...+++|+|+||+|
T Consensus 81 ~i~liDtPGh--------------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~D 145 (406)
T TIGR03680 81 RVSFVDAPGH--------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKID 145 (406)
T ss_pred EEEEEECCCH--------------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEccc
Confidence 4568999993 123345566677899999999999765 2222222222222 22356899999999
Q ss_pred CCChhhHHHHHHHH---hccC---CeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 286 LVPIWVTQRWVAIL---SKEY---PTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 286 Lv~~~~~~~wl~~l---~~~~---p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|++........+.+ .+.+ ...+|.+|+.++.|++.|++.|..+++
T Consensus 146 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 146 LVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred cCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 98754322111221 1111 234678899999999999999988655
No 160
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.22 E-value=6.8e-06 Score=76.41 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=68.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.||+|.... ... +...+..+|++++|+|+.+|.+... ..+...+.....+.|+++|.||+
T Consensus 48 ~~~i~Dt~G~~~~-----------~~~---~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~ 113 (166)
T cd01893 48 PTTIVDTSSRPQD-----------RAN---LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKS 113 (166)
T ss_pred EEEEEeCCCchhh-----------hHH---HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEch
Confidence 4557899985311 111 2334579999999999988765432 12223344334579999999999
Q ss_pred CCCChhhH---HHHHHHHhccCC--eEEeeeccCCCCChHHHHHHHHHH
Q psy6781 285 DLVPIWVT---QRWVAILSKEYP--TIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 285 DLv~~~~~---~~wl~~l~~~~p--~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
||.+.... ...+..+...+. ...+.+|++++.|+++|.+.+...
T Consensus 114 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 114 DLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred hcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHH
Confidence 99765421 222222222221 245678999999999998887654
No 161
>CHL00071 tufA elongation factor Tu
Probab=98.20 E-value=1.4e-05 Score=86.04 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=73.6
Q ss_pred cccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCc-EE
Q psy6781 200 NYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKH-LF 278 (534)
Q Consensus 200 ~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~-~I 278 (534)
.|..+..+..+.||||.. .++..+...+..+|++++|+||..........+..++.. .++| +|
T Consensus 69 ~~~~~~~~~~~iDtPGh~--------------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iI 132 (409)
T CHL00071 69 EYETENRHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIV 132 (409)
T ss_pred EEccCCeEEEEEECCChH--------------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEE
Confidence 344456678899999932 356677788899999999999997765544444455443 4677 67
Q ss_pred EEEeCCCCCChhhHH-----HHHHHHhc-cCC---eEEeeeccCCCC------------------ChHHHHHHHHHHhh
Q psy6781 279 FILNKVDLVPIWVTQ-----RWVAILSK-EYP---TIAFHASMTHPF------------------GKGSIINLLRQFSK 330 (534)
Q Consensus 279 lVLNKiDLv~~~~~~-----~wl~~l~~-~~p---~v~f~~Sa~~~~------------------gi~~Li~~L~~~~~ 330 (534)
+|+||+|+++..... .....|.. .++ ..++++|+.++. +...|++.|..+.+
T Consensus 133 vvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 133 VFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 899999998754321 22222322 121 235567776654 24567777776543
No 162
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.20 E-value=9.1e-06 Score=74.68 Aligned_cols=106 Identities=21% Similarity=0.193 Sum_probs=65.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCC--cHHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTR--CAHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~--~~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|+||... -..+| ...+..+|++|+|+|+.++.... ...+..++.. ...++|+++|+||
T Consensus 44 ~~~i~Dt~G~~~-----------~~~~~---~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 44 KFQVWDLGGQTS-----------IRPYW---RCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEECCCCHH-----------HHHHH---HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 456789999531 11223 23567999999999998753211 1122222221 2247999999999
Q ss_pred CCCCChhhHHHHHHHHhcc----CCeEEeeeccCCCCChHHHHHHHH
Q psy6781 284 VDLVPIWVTQRWVAILSKE----YPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~~----~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
+|+............+... ....+|.+|++++.|+++|++.|.
T Consensus 110 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 110 QDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 9997543223333333211 112478899999999999988775
No 163
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.20 E-value=1.1e-05 Score=77.24 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=59.9
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||... +.......+.++|++++|+|+.+........+...+. ..++|+++|+||+
T Consensus 64 ~~~~~l~DtpG~~~--------------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~--~~~~p~iiv~NK~ 127 (194)
T cd01891 64 DTKINIVDTPGHAD--------------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKAL--ELGLKPIVVINKI 127 (194)
T ss_pred CEEEEEEECCCcHH--------------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHH--HcCCCEEEEEECC
Confidence 34556899999531 1223445678999999999998753322222223222 2478999999999
Q ss_pred CCCChh---hHHHHHHHHhc------cCCeEEeeeccCCCCCh
Q psy6781 285 DLVPIW---VTQRWVAILSK------EYPTIAFHASMTHPFGK 318 (534)
Q Consensus 285 DLv~~~---~~~~wl~~l~~------~~p~v~f~~Sa~~~~gi 318 (534)
||.... ....+.+.+.. .....++.+|++++.|.
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 128 DRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWAS 170 (194)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccc
Confidence 997432 23344444421 12334667788887665
No 164
>COG2262 HflX GTPases [General function prediction only]
Probab=98.20 E-value=4.5e-06 Score=88.52 Aligned_cols=116 Identities=28% Similarity=0.320 Sum_probs=69.5
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee----EEEEeCccEEEEeCCCcccCCCCC-----------
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW----QYITLMRRIYLIDCPGVVYDMTNV----------- 399 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~----~~~~~~~~i~liDtPGi~~p~~~~----------- 399 (534)
.+-..|++|||+|+|||||+|+|++..+ .+.+....|-+. ..+..+..+.|-||-||+..-...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 3568899999999999999999998765 445554443322 122224689999999998533100
Q ss_pred cchHHHHHccccccccCCCc--h---hhHHHHHHhh---ccceeeehcCCCCCCCHHHHHHHHHH
Q psy6781 400 ETDTEKVLRGVVRVENIDDP--V---QYIDAVLERI---KKVHLVKTYGIDEWEDTEDFLKKLAF 456 (534)
Q Consensus 400 ~~~~e~vL~gvv~v~~i~~~--~---~~i~~iL~r~---~k~~l~~~ykId~~~d~~efLe~la~ 456 (534)
..+++++ .++++. .+| . +.+..+|..+ ..+.|.+.||||...+.. .+..+..
T Consensus 269 ~~~aDll-lhVVDa---Sdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-~~~~~~~ 328 (411)
T COG2262 269 VKEADLL-LHVVDA---SDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-ILAELER 328 (411)
T ss_pred hhcCCEE-EEEeec---CChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-hhhhhhh
Confidence 0111222 223222 223 1 2344456654 368899999999876554 3444443
No 165
>CHL00071 tufA elongation factor Tu
Probab=98.19 E-value=9e-07 Score=95.29 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=62.3
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCce-------e--------eCCCCCceeeeEEEEe---CccEEEEeCCCcccCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVC-------K--------TAPVPGETKVWQYITL---MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~-------~--------v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~ 396 (534)
+..++|+++|.+|+|||||+|+|++.... . ....+|+|.+...... +.++.|+||||...-
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~- 88 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY- 88 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH-
Confidence 56899999999999999999999964211 1 1123788876433322 357899999995311
Q ss_pred CCCcchHHHHHccc------ccc-ccCCCchhhHHHHHHhhccc-eeeehcCCCCCC
Q psy6781 397 TNVETDTEKVLRGV------VRV-ENIDDPVQYIDAVLERIKKV-HLVKTYGIDEWE 445 (534)
Q Consensus 397 ~~~~~~~e~vL~gv------v~v-~~i~~~~~~i~~iL~r~~k~-~l~~~ykId~~~ 445 (534)
.......+..+ +.. +.+......+..++.....+ .+..+||+|...
T Consensus 89 ---~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 89 ---VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred ---HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC
Confidence 11111112111 111 11222222334455556656 557899999764
No 166
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.19 E-value=9.9e-06 Score=91.58 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=72.7
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCc-EEEEEeCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKH-LFFILNKVD 285 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~-~IlVLNKiD 285 (534)
..-+.|+||. .++.+.+...+..+|++++|+|+..++.........++.. .+++ +|+|+||+|
T Consensus 52 ~i~~IDtPGh--------------e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiD 115 (614)
T PRK10512 52 VLGFIDVPGH--------------EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKAD 115 (614)
T ss_pred EEEEEECCCH--------------HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCc
Confidence 3458999993 2234556677889999999999998655443333344432 3455 579999999
Q ss_pred CCChhhHH----HHHHHHhcc-C-CeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 286 LVPIWVTQ----RWVAILSKE-Y-PTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 286 Lv~~~~~~----~wl~~l~~~-~-p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+++.+... .+.+.+... + ...+|.+|+.++.|++.|++.|.++..
T Consensus 116 lv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 116 RVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 98754332 222333221 1 234678899999999999999987654
No 167
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.19 E-value=6.5e-06 Score=84.26 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=40.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCC--------CCCceee-eE--EEEeC---ccEEEEeCCCcccC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAP--------VPGETKV-WQ--YITLM---RRIYLIDCPGVVYD 395 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~--------~pgtTk~-~~--~~~~~---~~i~liDtPGi~~p 395 (534)
.++|+++|.+|+|||||||+|++........ .+.++.. .. .+... -.+.++||||+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 5789999999999999999999987655432 2333221 11 11122 25899999999754
No 168
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.18 E-value=9.3e-06 Score=77.34 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=68.9
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCC--cHHHHHHHHh-hCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTR--CAHIENFLRR-EKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~--~~~le~~L~~-~~~~k~~IlVLN 282 (534)
....+.|++|... .+.+|. ..+.++|.+|+|+|+.+|.... ...+.+++.. ...++|+++|+|
T Consensus 61 ~~~~~~D~~G~~~-----------~~~~~~---~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~N 126 (184)
T smart00178 61 IKFTTFDLGGHQQ-----------ARRLWK---DYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGN 126 (184)
T ss_pred EEEEEEECCCCHH-----------HHHHHH---HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence 3456789999531 233444 3467999999999998873221 1133333321 225789999999
Q ss_pred CCCCCC---hhhHHHHHHHHhcc--------CCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 283 KVDLVP---IWVTQRWVAILSKE--------YPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 283 KiDLv~---~~~~~~wl~~l~~~--------~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|+|+.. ...+...+...... .+..+|.+|+.++.|+++++++|.+
T Consensus 127 K~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 127 KIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred CccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 999853 33333333221111 2345888999999999999998864
No 169
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.18 E-value=8e-06 Score=76.83 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=40.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
...+|+++|.+|||||||+++|+........+..|.+... +..-...+.|+||||..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE-IVYKNIRFLMWDIGGQE 70 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE-EEECCeEEEEEECCCCH
Confidence 3578999999999999999999876554444444544321 11124578999999974
No 170
>PLN03127 Elongation factor Tu; Provisional
Probab=98.17 E-value=1.2e-05 Score=87.62 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=71.7
Q ss_pred ccccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCc-E
Q psy6781 199 ENYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKH-L 277 (534)
Q Consensus 199 ~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~-~ 277 (534)
..|..+..+..|.||||+++ ++..+...+..+|++++|+||+.........+..++.. .++| +
T Consensus 117 ~~~~~~~~~i~~iDtPGh~~--------------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~i 180 (447)
T PLN03127 117 VEYETAKRHYAHVDCPGHAD--------------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSL 180 (447)
T ss_pred EEEcCCCeEEEEEECCCccc--------------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeE
Confidence 34555667889999999642 34555556678999999999998765544444455543 4677 4
Q ss_pred EEEEeCCCCCChhhHHHHH-----HHHhc-cCC---eEEeeeccC---CCCC-------hHHHHHHHHHHhh
Q psy6781 278 FFILNKVDLVPIWVTQRWV-----AILSK-EYP---TIAFHASMT---HPFG-------KGSIINLLRQFSK 330 (534)
Q Consensus 278 IlVLNKiDLv~~~~~~~wl-----~~l~~-~~p---~v~f~~Sa~---~~~g-------i~~Li~~L~~~~~ 330 (534)
|+|+||+|+++.......+ +.+.. .++ ..++++|+. ++.+ ...|++.|.++++
T Consensus 181 IvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 181 VVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred EEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 7889999999643322222 12211 121 223444543 3333 5678888877654
No 171
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.16 E-value=8.3e-06 Score=74.40 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=57.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHccccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGVVR 412 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~ 412 (534)
++|+++|.||||||||+|+|+..... ....+++.+. .....+ ..+.++||||..... ......+.++..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~~~~~~~~ 74 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA----AIRDNYHRSGEG 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh----HHHHHHhhcCCE
Confidence 37899999999999999999975432 2333333221 112222 258899999964332 123334443221
Q ss_pred ---cccCCCc------hhhHHHHHHh---hccceeeehcCCCCCC
Q psy6781 413 ---VENIDDP------VQYIDAVLER---IKKVHLVKTYGIDEWE 445 (534)
Q Consensus 413 ---v~~i~~~------~~~i~~iL~r---~~k~~l~~~ykId~~~ 445 (534)
+-.+.++ ..+...++.. ...+.+.+.||+|...
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 75 FLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 1122232 2333333333 3567788899999754
No 172
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.15 E-value=1.3e-05 Score=75.55 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=67.0
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCC--cHHHHHHHHh-hCCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTR--CAHIENFLRR-EKPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~--~~~le~~L~~-~~~~k~~IlVL 281 (534)
.-...+.|++|... ...+|. ..+.++|.+|+|+|+.+|.... ...+.+++.. ...+.|++||+
T Consensus 56 ~~~l~l~D~~G~~~-----------~~~~~~---~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~ 121 (175)
T smart00177 56 NISFTVWDVGGQDK-----------IRPLWR---HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFA 121 (175)
T ss_pred CEEEEEEECCCChh-----------hHHHHH---HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEE
Confidence 34566889999521 112232 3467999999999998774321 1122222322 12468999999
Q ss_pred eCCCCCChhhHHHHHHHHh----ccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 282 NKVDLVPIWVTQRWVAILS----KEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~----~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
||+||..........+.+. ...+...+.+||+++.|+.++++.|.+.
T Consensus 122 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 122 NKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred eCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 9999964321122222221 1123345678999999999999988753
No 173
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.15 E-value=1.4e-05 Score=73.16 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=37.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeCc---cEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~~---~i~liDtPGi~ 393 (534)
.++|+++|.||||||||+|++.+... +...+.++.... ...+.. .+.++||||..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 47899999999999999999987653 233344443221 122322 47889999964
No 174
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.15 E-value=4.3e-06 Score=82.98 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=45.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC-CceeeCC-CCCceee-eEEEEe-----CccEEEEeCCCcccCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK-KVCKTAP-VPGETKV-WQYITL-----MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~-~~~~v~~-~pgtTk~-~~~~~~-----~~~i~liDtPGi~~p~ 396 (534)
+-..|+++|.+++|||+|+|.|.+. ..+.+++ .+.+|+. |.+... +..++|+||||+..+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~ 74 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRE 74 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccc
Confidence 4567899999999999999999998 2445554 4566664 333322 3579999999998765
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.15 E-value=1.8e-05 Score=89.02 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=71.4
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCc-EEEEEeCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKH-LFFILNKV 284 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~-~IlVLNKi 284 (534)
....+.|+||. .++...+...+.++|++++|+|+.++..........++.. .+++ +|+|+||+
T Consensus 50 ~~v~~iDtPGh--------------e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~ 113 (581)
T TIGR00475 50 YRLGFIDVPGH--------------EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKA 113 (581)
T ss_pred EEEEEEECCCH--------------HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECC
Confidence 34568899993 2234555667789999999999998543322222223332 4677 99999999
Q ss_pred CCCChhhH---HHHHHHHhcc--C--CeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 285 DLVPIWVT---QRWVAILSKE--Y--PTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 285 DLv~~~~~---~~wl~~l~~~--~--p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+++.... ...+..+.+. + ...+|.+|+.++.|++.|.+.|.+++.
T Consensus 114 Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 114 DRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence 99876532 2222222211 1 234678899999999999888876654
No 176
>PRK12736 elongation factor Tu; Reviewed
Probab=98.14 E-value=2.4e-05 Score=83.89 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=74.2
Q ss_pred cccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCc-EE
Q psy6781 200 NYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKH-LF 278 (534)
Q Consensus 200 ~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~-~I 278 (534)
.|.....+..+.||||.. .+...+...+..+|++++|+|+.............++.. .++| +|
T Consensus 69 ~~~~~~~~i~~iDtPGh~--------------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~I 132 (394)
T PRK12736 69 EYETEKRHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLV 132 (394)
T ss_pred EecCCCcEEEEEECCCHH--------------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEE
Confidence 344455677899999932 234555667789999999999997655544444455443 4677 57
Q ss_pred EEEeCCCCCChhhHHH-----HHHHHhc-cCC---eEEeeeccCCCC--------ChHHHHHHHHHHhh
Q psy6781 279 FILNKVDLVPIWVTQR-----WVAILSK-EYP---TIAFHASMTHPF--------GKGSIINLLRQFSK 330 (534)
Q Consensus 279 lVLNKiDLv~~~~~~~-----wl~~l~~-~~p---~v~f~~Sa~~~~--------gi~~Li~~L~~~~~ 330 (534)
+|+||+|+++...... ..+.+.. .+. ..++.+|+.++. +...|++.|.++++
T Consensus 133 vviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 133 VFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 8899999985432221 2222222 121 346778888763 56788888887765
No 177
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.14 E-value=3.5e-06 Score=84.27 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=69.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCCc--eeeCC---------------CCCceeeeEEE---EeCccEEEEeCCCcccCCCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKV--CKTAP---------------VPGETKVWQYI---TLMRRIYLIDCPGVVYDMTN 398 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~--~~v~~---------------~pgtTk~~~~~---~~~~~i~liDtPGi~~p~~~ 398 (534)
+|+++|.+|+|||||+++|+.... ...+. ..|.|...... .-+.++.++||||...-.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 479999999999999999985321 11111 11222222122 224579999999985322
Q ss_pred CcchHHHHHcccc-------ccccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 399 VETDTEKVLRGVV-------RVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 399 ~~~~~e~vL~gvv-------~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
......++++. ..+.+......+...+.....+.+...||+|... +..+.++.+..+.|.
T Consensus 79 --~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~ 146 (237)
T cd04168 79 --AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSS 146 (237)
T ss_pred --HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCC
Confidence 12233332221 1112222223445556666778889999999764 677888888877653
No 178
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.14 E-value=6.8e-06 Score=78.74 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=55.8
Q ss_pred eEEEEEecCCCchhHHHHhhhCCC-ceee--------------CCCCCceeeeEEE---EeCccEEEEeCCCcccCCCCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKK-VCKT--------------APVPGETKVWQYI---TLMRRIYLIDCPGVVYDMTNV 399 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~-~~~v--------------~~~pgtTk~~~~~---~~~~~i~liDtPGi~~p~~~~ 399 (534)
.+|+++|.+|||||||+|+|+... .... ....|+|...... .-...+.|+||||...-.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 378999999999999999998621 1110 1124555433222 223478999999975321
Q ss_pred cchHHHHHccccc----cccCCCch---hhHHHHHHhhccceeeehcCCCCC
Q psy6781 400 ETDTEKVLRGVVR----VENIDDPV---QYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 400 ~~~~e~vL~gvv~----v~~i~~~~---~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
......+.++.. ++....+. ..+...+.....+.+.+.||+|..
T Consensus 80 -~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 80 -GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP 130 (194)
T ss_pred -HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 122233332211 11111111 122222333456678889999975
No 179
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.13 E-value=2.5e-05 Score=72.13 Aligned_cols=107 Identities=15% Similarity=0.086 Sum_probs=66.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh-hCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR-EKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~-~~~~k~~IlVLNKi 284 (534)
...+.|+||.. ++.......+.++|++++|+|+.+|.+... ..+...+.. ...+.|+|+|.||+
T Consensus 53 ~l~i~D~~G~~--------------~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 118 (165)
T cd01864 53 KLQIWDTAGQE--------------RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKC 118 (165)
T ss_pred EEEEEECCChH--------------HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 45678999931 111122345678999999999988754321 122222222 23578899999999
Q ss_pred CCCChh-hHHHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHH
Q psy6781 285 DLVPIW-VTQRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 285 DLv~~~-~~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
||.... ........+.+.+. ...+.+|++++.|++++.+.|.+
T Consensus 119 Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 119 DLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred ccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 997542 11122223333332 34678899999999999888764
No 180
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.13 E-value=1.5e-05 Score=74.53 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=65.7
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|+||... -..+|. ..+.++|++++|+|+.++....+ ..+..++.. ...++|+++|+||
T Consensus 59 ~l~l~D~~G~~~-----------~~~~~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK 124 (173)
T cd04154 59 KLNIWDVGGQKT-----------LRPYWR---NYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANK 124 (173)
T ss_pred EEEEEECCCCHH-----------HHHHHH---HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEEC
Confidence 455789999421 112333 34679999999999988733211 123333321 2257999999999
Q ss_pred CCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 284 VDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
+||..........+.+.. ......|.+||+++.|++++++.|.
T Consensus 125 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 125 QDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred cccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 999754222222222221 1224577889999999999887764
No 181
>PRK09866 hypothetical protein; Provisional
Probab=98.13 E-value=7.2e-06 Score=91.64 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=26.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceee
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKT 365 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v 365 (534)
..+.++++|++|+|||||+|+|.|..++.+
T Consensus 68 ~~~~valvG~sgaGKSTLiNaL~G~~Vlpt 97 (741)
T PRK09866 68 LEMVLAIVGTMKAGKSTTINAIVGTEVLPN 97 (741)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCccccC
Confidence 458999999999999999999999766554
No 182
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.13 E-value=7.7e-06 Score=77.90 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=40.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|.|.+.....+.+..+.+... ...-+..+.++||||..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~G~~ 72 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEE-LAIGNIKFTTFDLGGHQ 72 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEE-EEECCEEEEEEECCCCH
Confidence 4689999999999999999999987654443333333211 11123468899999975
No 183
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.13 E-value=1.7e-05 Score=71.67 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEee
Q psy6781 230 SKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFH 309 (534)
Q Consensus 230 skr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~ 309 (534)
+++.+..+.-...++|++++|..|.+|.+...+-+.... .+|+|-|++|+||+.+..+......|.+..-..+|.
T Consensus 51 ~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-----~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~ 125 (148)
T COG4917 51 HPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-----VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFE 125 (148)
T ss_pred hhHHHHHHHHHhhccceeeeeecccCccccCCccccccc-----ccceEEEEecccccchHhHHHHHHHHHHcCCcceEE
Confidence 455667777788999999999999999888776665443 356999999999996655555555555555567888
Q ss_pred eccCCCCChHHHHHHHHH
Q psy6781 310 ASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 310 ~Sa~~~~gi~~Li~~L~~ 327 (534)
.|+.++.|+++|..+|..
T Consensus 126 ~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 126 TSAVDNQGVEELVDYLAS 143 (148)
T ss_pred EeccCcccHHHHHHHHHh
Confidence 999999999999998874
No 184
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.13 E-value=2e-05 Score=72.96 Aligned_cols=87 Identities=16% Similarity=0.237 Sum_probs=58.2
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHP 315 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~ 315 (534)
..+.++|++|+|+|+.++.+.. .+..+ +....+++|+|+|+||+||.+.. .....+ +.+.+....|.+|++++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~~~~~~~~~~~Sa~~~ 143 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYK--NLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFN-FAEKHNLPLYYVSAADG 143 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHH-HHHHcCCeEEEEeCCCC
Confidence 3567999999999998775432 23333 33334579999999999996432 222222 22222334577899999
Q ss_pred CChHHHHHHHHHHh
Q psy6781 316 FGKGSIINLLRQFS 329 (534)
Q Consensus 316 ~gi~~Li~~L~~~~ 329 (534)
.|++++++.|.+..
T Consensus 144 ~gv~~l~~~l~~~~ 157 (161)
T cd04124 144 TNVVKLFQDAIKLA 157 (161)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999988886543
No 185
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.13 E-value=3.9e-06 Score=78.53 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=40.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|.+.....+.+..|....... .-...+.++||||..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~-~~~~~l~l~D~~G~~ 69 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLE-YEGYKLNIWDVGGQK 69 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEE-ECCEEEEEEECCCCH
Confidence 467899999999999999999998765444444443222111 113468999999974
No 186
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.13 E-value=4.2e-06 Score=76.57 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=39.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEeC---ccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~~---~~i~liDtPGi~ 393 (534)
+|+++|.+|||||||+|+|++... ..+..|++|.+... +..+ -.+.++||||-.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH
Confidence 689999999999999999998764 33556666654322 2222 257899999953
No 187
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.13 E-value=1.6e-05 Score=72.62 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=66.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|+||... ....| ...+..+|++++|+|+..|..... ..+..++.. ...+.|+++|+||
T Consensus 44 ~~~i~D~~G~~~-----------~~~~~---~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd00878 44 SFTVWDVGGQDK-----------IRPLW---KHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANK 109 (158)
T ss_pred EEEEEECCCChh-----------hHHHH---HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeec
Confidence 456789999421 12223 345678999999999997632211 122222221 2357899999999
Q ss_pred CCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 284 VDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
+|+..........+.+.. .....++.+|++++.|++.+++.|.
T Consensus 110 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 110 QDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred cCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 999864322222222221 1234577889999999999988775
No 188
>PTZ00099 rab6; Provisional
Probab=98.12 E-value=1.5e-05 Score=75.97 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=68.7
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhhCCCCcEEEEEeC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~~~~k~~IlVLNK 283 (534)
-+..+-||+|.+.. ..++. ..+.++|++|+|+|+.++.+... ..+...+....++.|+|||.||
T Consensus 29 v~l~iwDt~G~e~~-----------~~~~~---~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 29 VRLQLWDTAGQERF-----------RSLIP---SYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEECCChHHh-----------hhccH---HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 34567899995321 11222 34579999999999987644322 1222232222246788999999
Q ss_pred CCCCCh-----hhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 284 VDLVPI-----WVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 284 iDLv~~-----~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
+||... .....+. ..+....|.+||+++.|+.++++.|...++.
T Consensus 95 ~DL~~~~~v~~~e~~~~~----~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQKA----QEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cccccccCCCHHHHHHHH----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999642 2222222 2234456788999999999999988876653
No 189
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.12 E-value=1.9e-05 Score=70.81 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=57.5
Q ss_pred HHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEeCCCCC-ChhhHHHHHHHHhccCCeEEeeec
Q psy6781 237 LYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILNKVDLV-PIWVTQRWVAILSKEYPTIAFHAS 311 (534)
Q Consensus 237 l~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLNKiDLv-~~~~~~~wl~~l~~~~p~v~f~~S 311 (534)
....++++|++++|+|+.++... ..+..++ .. ...+.|+++|+||+|+. +......-...+...+....+.+|
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 143 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESF--ENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETS 143 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEe
Confidence 44567899999999999875332 2333333 22 12468999999999996 322222222223333445577889
Q ss_pred cCCCCChHHHHHHHH
Q psy6781 312 MTHPFGKGSIINLLR 326 (534)
Q Consensus 312 a~~~~gi~~Li~~L~ 326 (534)
+.++.|++.+++.|.
T Consensus 144 a~~~~~i~~~~~~i~ 158 (159)
T cd00154 144 AKTGENVEELFQSLA 158 (159)
T ss_pred cCCCCCHHHHHHHHh
Confidence 999999999888764
No 190
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.12 E-value=1.7e-05 Score=73.51 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=64.4
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLN 282 (534)
-+..+.|++|... -..+| ...+.++|++|+|+|+.++..... ..+.+.+.. ...+.|++||.|
T Consensus 44 ~~~~l~D~~G~~~-----------~~~~~---~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 109 (159)
T cd04150 44 ISFTVWDVGGQDK-----------IRPLW---RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFAN 109 (159)
T ss_pred EEEEEEECCCCHh-----------HHHHH---HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEE
Confidence 3456789999421 11223 235679999999999987643211 112222221 123589999999
Q ss_pred CCCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 283 KVDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 283 KiDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
|+||.+..........+.. .....++.+||+++.|++++++.|.
T Consensus 110 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 110 KQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 9999643222222222211 1123456789999999999988775
No 191
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.12 E-value=2e-05 Score=71.99 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh----hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeec
Q psy6781 237 LYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR----EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHAS 311 (534)
Q Consensus 237 l~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~----~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~S 311 (534)
....+.++|++|+|+|+++|.+. ..+..++.. ..++.|+++|.||+|+.+... .......+.+.+....+.+|
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~--~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~S 143 (164)
T smart00175 66 TSSYYRGAVGALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETS 143 (164)
T ss_pred HHHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEe
Confidence 34557789999999999987553 233333321 225789999999999976321 11111222222333478889
Q ss_pred cCCCCChHHHHHHHHHHh
Q psy6781 312 MTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 312 a~~~~gi~~Li~~L~~~~ 329 (534)
+.++.|++.+++.|.+.+
T Consensus 144 a~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 144 AKTNTNVEEAFEELAREI 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999988887543
No 192
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.12 E-value=2.2e-05 Score=74.66 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=64.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|++|... ...+|. ..+.++|++|+|+|+.++..... ..+.++... ...++|+++|+||
T Consensus 53 ~l~l~Dt~G~~~-----------~~~~~~---~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK 118 (183)
T cd04152 53 TFHFWDVGGQEK-----------LRPLWK---SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANK 118 (183)
T ss_pred EEEEEECCCcHh-----------HHHHHH---HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEEC
Confidence 355789998421 112332 24678999999999987632111 112222221 2347899999999
Q ss_pred CCCCChhhHHHHHHHHh--cc---CCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 284 VDLVPIWVTQRWVAILS--KE---YPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~--~~---~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+|+............+. .. .+..++.+||+++.|+++|++.|.+.+
T Consensus 119 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 119 QDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred cCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 99964321122222111 11 123467889999999999988876544
No 193
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.12 E-value=2e-05 Score=72.40 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=67.1
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---hhCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---REKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~~~~~k~~IlVLN 282 (534)
-+..+.|++|.. ....++ ...+.++|++++|+|+.++... ..+..++. ....+.|.|+|.|
T Consensus 52 ~~l~i~Dt~G~~-----------~~~~~~---~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~n 115 (164)
T cd04101 52 VELFIFDSAGQE-----------LYSDMV---SNYWESPSVFILVYDVSNKASF--ENCSRWVNKVRTASKHMPGVLVGN 115 (164)
T ss_pred EEEEEEECCCHH-----------HHHHHH---HHHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEE
Confidence 345678999831 112233 3356799999999999876432 22334432 2235689999999
Q ss_pred CCCCCChhhH-HHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 283 KVDLVPIWVT-QRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 283 KiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|+|+.+.... ......+...+....+.+|+.++.|++++++.|.+
T Consensus 116 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 116 KMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred CcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 9999754321 11222233333334678899999999999888764
No 194
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.11 E-value=1.8e-05 Score=74.44 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=66.2
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVL 281 (534)
.-...+.|+||... ....|. ..+..+|++++|+|+.++..... ..+.+++.. ...++|+++|+
T Consensus 58 ~~~~~l~D~~G~~~-----------~~~~~~---~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~ 123 (174)
T cd04153 58 NIRFLMWDIGGQES-----------LRSSWN---TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLA 123 (174)
T ss_pred CeEEEEEECCCCHH-----------HHHHHH---HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEE
Confidence 34567789999521 122232 34679999999999987643211 123333332 12468999999
Q ss_pred eCCCCCChhhHHHHHHHHh----ccCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 282 NKVDLVPIWVTQRWVAILS----KEYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~----~~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
||+|+..........+.+. ......++.+||.++.|++++++.|.
T Consensus 124 NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 124 NKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred ECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHh
Confidence 9999964321222223332 11223467889999999999988875
No 195
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.11 E-value=5.8e-06 Score=75.73 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=40.2
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+|+|.+.... ...+.+|.+.....+... -.+.|+||||..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 47899999999999999999986542 245555655443333333 357899999964
No 196
>PRK00049 elongation factor Tu; Reviewed
Probab=98.10 E-value=2.1e-05 Score=84.40 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=74.8
Q ss_pred cccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEE-
Q psy6781 200 NYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLF- 278 (534)
Q Consensus 200 ~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~I- 278 (534)
.|.....+..+.||||.+ ++...+...+..+|++++|+||+.+.......+..++.. .++|.+
T Consensus 69 ~~~~~~~~i~~iDtPG~~--------------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~ii 132 (396)
T PRK00049 69 EYETEKRHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIV 132 (396)
T ss_pred EEcCCCeEEEEEECCCHH--------------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEE
Confidence 354456688899999942 355666777899999999999998765544455555543 467876
Q ss_pred EEEeCCCCCChhhHH-HH----HHHHhc-cCC---eEEeeeccCCCC----------ChHHHHHHHHHHhh
Q psy6781 279 FILNKVDLVPIWVTQ-RW----VAILSK-EYP---TIAFHASMTHPF----------GKGSIINLLRQFSK 330 (534)
Q Consensus 279 lVLNKiDLv~~~~~~-~w----l~~l~~-~~p---~v~f~~Sa~~~~----------gi~~Li~~L~~~~~ 330 (534)
+++||+|+++..... .+ .+.+.. .++ ..++.+|+.++. |...|+++|.++.+
T Consensus 133 VvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 133 VFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred EEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 589999998643221 11 222222 221 234567877653 45688888887654
No 197
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.10 E-value=1.8e-05 Score=74.32 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=65.4
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLN 282 (534)
-...+.|++|... -..+|. ..+.++|++|+|+|+.++..... ..+.+++.. ...++|++||.|
T Consensus 53 ~~~~l~Dt~G~~~-----------~~~~~~---~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 53 VKFNVWDVGGQDK-----------IRPLWR---HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFAN 118 (168)
T ss_pred EEEEEEECCCCHH-----------HHHHHH---HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence 3456789999521 112232 35679999999999998743311 112223321 124689999999
Q ss_pred CCCCCCh---hhHHHHHHHHh-ccCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 283 KVDLVPI---WVTQRWVAILS-KEYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 283 KiDLv~~---~~~~~wl~~l~-~~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
|+||... +....++..-. ...+...|.+||+++.|++++++.|.
T Consensus 119 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 119 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 9999642 33333322111 11223567889999999999888774
No 198
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.10 E-value=1.7e-05 Score=74.22 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=67.7
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCC--cHHHHHHHHh-hCCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTR--CAHIENFLRR-EKPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~--~~~le~~L~~-~~~~k~~IlVL 281 (534)
.-...+.|+||.... ..+| ...+.++|.+++|+|+.++.... ...+..++.. ...+.|++||.
T Consensus 42 ~~~i~l~Dt~G~~~~-----------~~~~---~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 42 NLKFTIWDVGGKHKL-----------RPLW---KHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CEEEEEEECCCChhc-----------chHH---HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 345667899996421 1122 23456899999999998774321 1222333322 12357999999
Q ss_pred eCCCCCCh---hhHHHHHHHHhc--cCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPI---WVTQRWVAILSK--EYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~---~~~~~wl~~l~~--~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||... .....++..... ..+..++.+||+++.|++++++.|.+.+.
T Consensus 108 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 108 NKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred eCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 99999643 222233221111 11234567899999999999998876443
No 199
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.09 E-value=2.6e-05 Score=71.91 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=56.9
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcH-HH-HHHHHhh----CCCCcEEEEEeCCCCCC-hhhHHHHHHHHhccC-CeEEeee
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCA-HI-ENFLRRE----KPHKHLFFILNKVDLVP-IWVTQRWVAILSKEY-PTIAFHA 310 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~-~l-e~~L~~~----~~~k~~IlVLNKiDLv~-~~~~~~wl~~l~~~~-p~v~f~~ 310 (534)
..+.++|.+|+|+|+.++...... .+ ..++... ..++|+++|+||+|+.+ ......-.+.+.+.. ....|.+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEE
Confidence 457789999999999877532211 11 1222211 23789999999999983 211111122222222 2457889
Q ss_pred ccCCCCChHHHHHHHHHH
Q psy6781 311 SMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 311 Sa~~~~gi~~Li~~L~~~ 328 (534)
|+.++.|++.+++.+.+.
T Consensus 148 Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 148 SAKEAINVEQAFETIARK 165 (172)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999998887754
No 200
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.09 E-value=1.5e-06 Score=98.50 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=25.7
Q ss_pred hccccceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 332 HTERKQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 332 ~~~~~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+..+..++|+++|.+|+|||||+|+|+...
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~ 48 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDS 48 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHh
Confidence 445567899999999999999999999654
No 201
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.09 E-value=2.8e-05 Score=75.39 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=68.0
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHhh----CCCCcEEEEEe
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRRE----KPHKHLFFILN 282 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~~----~~~k~~IlVLN 282 (534)
..+.||||...... .............+.++|++|+|+|+.++.+... ..+.+.+... ..++|+|+|.|
T Consensus 51 l~i~Dt~G~~~~~~------~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgN 124 (198)
T cd04142 51 LHILDVPNMQRYPG------TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124 (198)
T ss_pred EEEEeCCCcccCCc------cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 45789999753211 1122223334456789999999999987754321 1111222211 35789999999
Q ss_pred CCCCCChhhHH-HHHHHH-hccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 283 KVDLVPIWVTQ-RWVAIL-SKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 283 KiDLv~~~~~~-~wl~~l-~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|+||....... .-.+.+ .+.+....|.+|++++.|++.|++.+..
T Consensus 125 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~ 171 (198)
T cd04142 125 KRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLI 171 (198)
T ss_pred CccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 99996532111 111222 2222334678899999999998877764
No 202
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.08 E-value=7.3e-06 Score=75.09 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=38.9
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGV 392 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi 392 (534)
++|+++|.+|||||||+|+|.+..... ..+..|.+.....+..+ -.+.++||||-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence 689999999999999999999876543 44445543322222232 35789999995
No 203
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.08 E-value=2.8e-05 Score=75.79 Aligned_cols=102 Identities=20% Similarity=0.133 Sum_probs=61.5
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
...+..+.||||.. ++...+...+..+|++|+|+|+..+.......+..++.. ...+++|+|+||
T Consensus 75 ~~~~~~liDTpG~~--------------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~~iIvviNK 139 (208)
T cd04166 75 PKRKFIIADTPGHE--------------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIRHVVVAVNK 139 (208)
T ss_pred CCceEEEEECCcHH--------------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCCcEEEEEEc
Confidence 34567789999942 122344556789999999999998765443333344432 112456779999
Q ss_pred CCCCChh--hHHHHHHH----Hhc-cC-CeEEeeeccCCCCChHH
Q psy6781 284 VDLVPIW--VTQRWVAI----LSK-EY-PTIAFHASMTHPFGKGS 320 (534)
Q Consensus 284 iDLv~~~--~~~~wl~~----l~~-~~-p~v~f~~Sa~~~~gi~~ 320 (534)
+|+.... ........ +.. .+ +..+|.+|+.++.|+..
T Consensus 140 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 140 MDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 9997521 11111111 111 12 23467889999988753
No 204
>PLN03118 Rab family protein; Provisional
Probab=98.07 E-value=7e-06 Score=79.80 Aligned_cols=144 Identities=17% Similarity=0.110 Sum_probs=78.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHccccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGVVR 412 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~ 412 (534)
..++|+|+|.+|||||||+|+|++.......+..|.+.....+.++ ..+.|+||||..... ......++++..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----~~~~~~~~~~d~ 88 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR----TLTSSYYRNAQG 88 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhH----HHHHHHHhcCCE
Confidence 3689999999999999999999987654455555544333333333 257899999964322 112333332211
Q ss_pred ---cccCCCch------hhHHHHHHhh----ccceeeehcCCCCCCC---HHHHHHHHHHHhCCcc----ccCcchHHHH
Q psy6781 413 ---VENIDDPV------QYIDAVLERI----KKVHLVKTYGIDEWED---TEDFLKKLAFKWGKIK----KKGEPVITAS 472 (534)
Q Consensus 413 ---v~~i~~~~------~~i~~iL~r~----~k~~l~~~ykId~~~d---~~efLe~la~k~g~l~----kgG~pD~~~a 472 (534)
+-.+.++. ++....+... ..+.+.+.+|+|.... ..+....++...+... ....-+++.+
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC 168 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 11122222 1112223221 2345677899886421 1233344555544221 1112367777
Q ss_pred HHHHHHHHHcC
Q psy6781 473 AKMVLNDWQRG 483 (534)
Q Consensus 473 A~~vL~d~~~G 483 (534)
...++..+...
T Consensus 169 ~~~l~~~~~~~ 179 (211)
T PLN03118 169 FEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHhh
Confidence 78888777653
No 205
>PRK12735 elongation factor Tu; Reviewed
Probab=98.06 E-value=4.4e-05 Score=81.99 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=71.8
Q ss_pred ccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEE-E
Q psy6781 201 YKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLF-F 279 (534)
Q Consensus 201 ~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~I-l 279 (534)
|..+..+..+.||||.+ .+...+...+..+|++++|+||.............++. ..++|.| +
T Consensus 70 ~~~~~~~i~~iDtPGh~--------------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~--~~gi~~iiv 133 (396)
T PRK12735 70 YETANRHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR--QVGVPYIVV 133 (396)
T ss_pred EcCCCcEEEEEECCCHH--------------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHH--HcCCCeEEE
Confidence 44456678899999942 34566778888999999999998754332222223333 2467866 5
Q ss_pred EEeCCCCCChhhHHH-----HHHHHhc-cCC---eEEeeeccCCCC----------ChHHHHHHHHHHhh
Q psy6781 280 ILNKVDLVPIWVTQR-----WVAILSK-EYP---TIAFHASMTHPF----------GKGSIINLLRQFSK 330 (534)
Q Consensus 280 VLNKiDLv~~~~~~~-----wl~~l~~-~~p---~v~f~~Sa~~~~----------gi~~Li~~L~~~~~ 330 (534)
|+||+||++...... ....+.. .++ ..++.+|+.++. +...|++.|.++.+
T Consensus 134 vvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 134 FLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred EEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 799999985432221 1122222 111 335677887763 56788888887654
No 206
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.06 E-value=3.1e-05 Score=72.09 Aligned_cols=106 Identities=15% Similarity=0.079 Sum_probs=68.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh----hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR----EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~----~~~~k~~IlVLN 282 (534)
...+.|++|.. ++.......+.++|.+|+|+|+.+|.+. ..+..++.. ..++.|+|+|.|
T Consensus 54 ~~~i~Dt~G~~--------------~~~~~~~~~~~~~d~il~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pvivv~n 117 (168)
T cd01866 54 KLQIWDTAGQE--------------SFRSITRSYYRGAAGALLVYDITRRETF--NHLTSWLEDARQHSNSNMTIMLIGN 117 (168)
T ss_pred EEEEEECCCcH--------------HHHHHHHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 34577999832 1122234566799999999999876543 245555432 235789999999
Q ss_pred CCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 283 KVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 283 KiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|+|+.... ........+........|.+|+.++.|+++++..+...
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 118 KCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred CcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99997432 12222333333334457889999999999988776543
No 207
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.06 E-value=2e-05 Score=72.07 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=65.2
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH----HHh-hCCCCcEEEEEe
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF----LRR-EKPHKHLFFILN 282 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~----L~~-~~~~k~~IlVLN 282 (534)
..+.||||.... ..++ ...+.++|.+++|+|+.++.... .+..+ ... ...+.|+|+|+|
T Consensus 52 ~~i~Dt~G~~~~-----------~~~~---~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 52 LDILDTAGQEEF-----------SAMR---EQYMRTGEGFLLVFSVTDRGSFE--EVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEECCCCcch-----------hHHH---HHHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhCCCCCCEEEEee
Confidence 446799995321 1122 23456899999999998765321 22222 221 234789999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|+||..... .......+.+.+....|.+|++++.|++++++.|..
T Consensus 116 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 161 (164)
T cd04145 116 KADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVR 161 (164)
T ss_pred CccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHH
Confidence 999975421 122233333333345688999999999998887754
No 208
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.06 E-value=7e-06 Score=94.04 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=74.1
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC-----ceeeCC------------CCCceeeeEEE---EeCccEEEEeCCCcccCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK-----VCKTAP------------VPGETKVWQYI---TLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~-----~~~v~~------------~pgtTk~~~~~---~~~~~i~liDtPGi~~p~ 396 (534)
-.+|+++|.+|+|||||+|+|.... ...+.+ ..|+|...... +-+..+.|+||||.....
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 3589999999999999999997421 111211 35666553332 235689999999997433
Q ss_pred CCCcchHHHHHccc------cc-cccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 397 TNVETDTEKVLRGV------VR-VENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 397 ~~~~~~~e~vL~gv------v~-v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
. .....+..+ +. .+.+......+...+.....+.+...||+|... +..++++.+..+.+.
T Consensus 90 --~--~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 90 --V--EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGA 157 (689)
T ss_pred --H--HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 1 223333222 11 112222223444556666778888999999764 567788888877664
No 209
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.06 E-value=2.7e-05 Score=74.45 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=59.6
Q ss_pred HHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEEeCCCCCChh-hHHHHHHHHhccCCeEEeeecc
Q psy6781 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFILNKVDLVPIW-VTQRWVAILSKEYPTIAFHASM 312 (534)
Q Consensus 238 ~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa 312 (534)
...+..+|++|+|+|+.++.+.. .+..+ +.. ...+.|+++|+||+||.... ......+.+...+....+.+|+
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa 145 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFD--NIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSA 145 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeC
Confidence 34567899999999998764321 22222 222 22368999999999996432 1122333343333344678899
Q ss_pred CCCCChHHHHHHHHHHhh
Q psy6781 313 THPFGKGSIINLLRQFSK 330 (534)
Q Consensus 313 ~~~~gi~~Li~~L~~~~~ 330 (534)
+++.|++.|+..|.+.+.
T Consensus 146 ~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 146 KTGLNVELAFTAVAKELK 163 (191)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998887654
No 210
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.05 E-value=4.9e-06 Score=82.51 Aligned_cols=109 Identities=18% Similarity=0.251 Sum_probs=59.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC-CceeeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCCcchHHHHHccccccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK-KVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVE 414 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~-~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~v~ 414 (534)
.+..|+++|.||+|||||+|+|.+. ....++...|+... ....+.++.++||||...........++.++..+...+
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i--~~~~~~~i~~vDtPg~~~~~l~~ak~aDvVllviDa~~ 115 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITV--VTGKKRRLTFIECPNDINAMIDIAKVADLVLLLIDASF 115 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEEE--EecCCceEEEEeCCchHHHHHHHHHhcCEEEEEEecCc
Confidence 4677899999999999999999875 22334445564211 12235689999999854111000001111111111112
Q ss_pred cCCCchhhHHHHHHhhccc-eeeehcCCCCCCC
Q psy6781 415 NIDDPVQYIDAVLERIKKV-HLVKTYGIDEWED 446 (534)
Q Consensus 415 ~i~~~~~~i~~iL~r~~k~-~l~~~ykId~~~d 446 (534)
.+......+..++.....+ .+.+.+|+|....
T Consensus 116 ~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 116 GFEMETFEFLNILQVHGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEEeccccCCc
Confidence 2222233344455544444 4558899997643
No 211
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.05 E-value=2.4e-05 Score=71.54 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=57.9
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---HhhCCCCcEEEEEeCCCCCChhhH-HHHHHHHhccCCeEEeeeccCC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RREKPHKHLFFILNKVDLVPIWVT-QRWVAILSKEYPTIAFHASMTH 314 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~~~~~k~~IlVLNKiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~ 314 (534)
..+.++|.+++|.|+.++.+. ..+..++ .....+.|+|+|.||+||...... ..-...+.+.+....|.+|+++
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~--~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 147 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESF--EAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKD 147 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 356799999999999877543 2333433 334468999999999999753221 1112222222333467889999
Q ss_pred CCChHHHHHHHHH
Q psy6781 315 PFGKGSIINLLRQ 327 (534)
Q Consensus 315 ~~gi~~Li~~L~~ 327 (534)
+.|+++|.+.|.+
T Consensus 148 ~~~v~~l~~~l~~ 160 (162)
T cd04106 148 DFNVTELFEYLAE 160 (162)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999888764
No 212
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.05 E-value=2.9e-05 Score=84.57 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=69.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||++.... ...+..++.....+.++|++|+|+|+.++....+. +...+. ..++|+|+|+||+||
T Consensus 252 ~v~l~DTaG~~~~~~------~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~--~~~~piIlV~NK~Dl 322 (442)
T TIGR00450 252 LIKLLDTAGIREHAD------FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLN--KSKKPFILVLNKIDL 322 (442)
T ss_pred EEEEeeCCCcccchh------HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHh--hCCCCEEEEEECccC
Confidence 456889999865432 12334455667888999999999999988654332 222222 247899999999999
Q ss_pred CChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 287 VPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 287 v~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
.... ... +.+......+.+|+++ .|++.+++.|.+.
T Consensus 323 ~~~~-~~~----~~~~~~~~~~~vSak~-~gI~~~~~~L~~~ 358 (442)
T TIGR00450 323 KINS-LEF----FVSSKVLNSSNLSAKQ-LKIKALVDLLTQK 358 (442)
T ss_pred CCcc-hhh----hhhhcCCceEEEEEec-CCHHHHHHHHHHH
Confidence 7542 222 2222222245678876 5888877777654
No 213
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.05 E-value=2.4e-05 Score=72.13 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=35.0
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+|+|.+..... ..+..|.+.....+.... .+.++||||..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 478999999999999999999865311 111222221111222222 46799999963
No 214
>PRK12735 elongation factor Tu; Reviewed
Probab=98.05 E-value=4.9e-06 Score=89.30 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=42.5
Q ss_pred cccceEEEEEecCCCchhHHHHhhhCC------Cce---------eeCCCCCceeeeEEEEe---CccEEEEeCCCcc
Q psy6781 334 ERKQISVGFIGYPNVGKSSIINALRNK------KVC---------KTAPVPGETKVWQYITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 334 ~~~~~~v~vvG~pnvGKSSliN~L~~~------~~~---------~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~ 393 (534)
.++.++|+++|.+|+|||||+|+|++. ... ......|.|.+...... ..++.|+||||..
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 356899999999999999999999862 111 01124677776543333 3478999999973
No 215
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.04 E-value=4.8e-06 Score=84.32 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=66.2
Q ss_pred EEEEEecCCCchhHHHHhhhCCCce--eeCCC-CCc--------------eeeeE---EEEeCccEEEEeCCCcccCCCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVC--KTAPV-PGE--------------TKVWQ---YITLMRRIYLIDCPGVVYDMTN 398 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~--~v~~~-pgt--------------Tk~~~---~~~~~~~i~liDtPGi~~p~~~ 398 (534)
+|+++|.+|+|||||+|+|+..... ..+.+ .|+ |.... +...+..+.|+||||...-.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 4799999999999999999753211 11111 122 21111 11224578999999985321
Q ss_pred CcchHHHHHcccccc----c---cCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 399 VETDTEKVLRGVVRV----E---NIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 399 ~~~~~e~vL~gvv~v----~---~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
.....++..+..+ + ........+...+...+.+.+...||+|... +..+.++.+....|.
T Consensus 79 --~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~ 146 (268)
T cd04170 79 --GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGR 146 (268)
T ss_pred --HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCC
Confidence 1223333322111 1 1111112333445566677888999999764 566778888776653
No 216
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.03 E-value=1.9e-05 Score=72.57 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=35.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
+|+++|.+|||||||+|+|.........+.-|.+.. .+...+..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE-TVTYKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE-EEEECCEEEEEEECCCCH
Confidence 478999999999999999976654332222222211 111123468999999975
No 217
>PLN03127 Elongation factor Tu; Provisional
Probab=98.03 E-value=7.7e-06 Score=89.18 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=64.7
Q ss_pred ccccceEEEEEecCCCchhHHHHhhhCC------Cce---------eeCCCCCceeeeEEEEe---CccEEEEeCCCccc
Q psy6781 333 TERKQISVGFIGYPNVGKSSIINALRNK------KVC---------KTAPVPGETKVWQYITL---MRRIYLIDCPGVVY 394 (534)
Q Consensus 333 ~~~~~~~v~vvG~pnvGKSSliN~L~~~------~~~---------~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~ 394 (534)
..+..++|+++|.+|+|||||+++|.+. ... .....+|+|.+...... +.++.|+||||...
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3467899999999999999999999732 110 11123788887544443 34789999999742
Q ss_pred CCCC---CcchHHHHHccccccccCCCchhhHHHHHHhhccce-eeehcCCCCCC
Q psy6781 395 DMTN---VETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVH-LVKTYGIDEWE 445 (534)
Q Consensus 395 p~~~---~~~~~e~vL~gvv~v~~i~~~~~~i~~iL~r~~k~~-l~~~ykId~~~ 445 (534)
--.. ....++.++..+...+.+......+..++.....+. +..+||+|...
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 1100 000011111111111222222333445566666664 67889999764
No 218
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.03 E-value=5e-05 Score=85.71 Aligned_cols=110 Identities=14% Similarity=0.107 Sum_probs=72.2
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
.+..+.||||..+ +..+....+..+|.+|+|+|+.++..........++. ..+.|+|+|+||+|
T Consensus 70 ~~l~liDTPG~~d--------------F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~--~~~ipiIiViNKiD 133 (595)
T TIGR01393 70 YVLNLIDTPGHVD--------------FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL--ENDLEIIPVINKID 133 (595)
T ss_pred EEEEEEECCCcHH--------------HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH--HcCCCEEEEEECcC
Confidence 3567899999642 2234456788999999999999875543222212222 24789999999999
Q ss_pred CCChh---hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhh
Q psy6781 286 LVPIW---VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLH 332 (534)
Q Consensus 286 Lv~~~---~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~ 332 (534)
|.... ....+.+.+. ..+..++.+||+++.|++.|++.|.+.++..
T Consensus 134 l~~~~~~~~~~el~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 134 LPSADPERVKKEIEEVIG-LDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred CCccCHHHHHHHHHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 96432 1123333221 1112467889999999999999998877643
No 219
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.03 E-value=6.9e-06 Score=75.16 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=38.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeC--ccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM--RRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~--~~i~liDtPGi~ 393 (534)
+|+++|.+|||||||+|+|.+.......+..|.+.. .+... ..+.++||||..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQLEKHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEeCCceEEEEEECCCCH
Confidence 378999999999999999998776544444443322 22222 368999999964
No 220
>PRK00049 elongation factor Tu; Reviewed
Probab=98.02 E-value=7.5e-06 Score=87.90 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=64.1
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCc------e---------eeCCCCCceeeeEEEEe---CccEEEEeCCCcccCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKV------C---------KTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~------~---------~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~ 396 (534)
+..++|+++|.+++|||||+++|++... . .....+|+|.+...... +.++.|+||||...-.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 4689999999999999999999986310 0 01125688877544443 3578999999974110
Q ss_pred ---CCCcchHHHHHccccccccCCCchhhHHHHHHhhcccee-eehcCCCCCC
Q psy6781 397 ---TNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHL-VKTYGIDEWE 445 (534)
Q Consensus 397 ---~~~~~~~e~vL~gvv~v~~i~~~~~~i~~iL~r~~k~~l-~~~ykId~~~ 445 (534)
......++.++..+...+.+......+..++.....+.+ ..+||+|...
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 000111122221111112222222334455666666765 5789999864
No 221
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.02 E-value=1.3e-05 Score=73.84 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=35.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCce---eeCCCCCceeee--EEEEe-CccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVC---KTAPVPGETKVW--QYITL-MRRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~---~v~~~pgtTk~~--~~~~~-~~~i~liDtPGi~ 393 (534)
+|+++|.+|||||||+|+|.+.... .....+.+|... ..+.. +..+.++||||..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh
Confidence 4789999999999999999864321 111112223221 12222 3578999999975
No 222
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.02 E-value=4.6e-05 Score=83.79 Aligned_cols=103 Identities=19% Similarity=0.094 Sum_probs=63.5
Q ss_pred ccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEe
Q psy6781 203 EEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILN 282 (534)
Q Consensus 203 ~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLN 282 (534)
.+..+..+.||||.. .+.+++...+..+|++|+|+||.............++... .-+++|+|+|
T Consensus 104 ~~~~~i~~iDTPGh~--------------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvN 168 (474)
T PRK05124 104 TEKRKFIIADTPGHE--------------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVN 168 (474)
T ss_pred cCCcEEEEEECCCcH--------------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEE
Confidence 346688899999931 1234455567899999999999877654333333333221 1257889999
Q ss_pred CCCCCCh--hhHHHHHHHHh---cc---C-CeEEeeeccCCCCChHH
Q psy6781 283 KVDLVPI--WVTQRWVAILS---KE---Y-PTIAFHASMTHPFGKGS 320 (534)
Q Consensus 283 KiDLv~~--~~~~~wl~~l~---~~---~-p~v~f~~Sa~~~~gi~~ 320 (534)
|+|++.. .......+.+. +. . ...++++|+.++.|+..
T Consensus 169 KiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 169 KMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred eeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccc
Confidence 9999842 22222222221 11 1 24467889999888754
No 223
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.01 E-value=2.8e-05 Score=75.95 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=56.9
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhh----CCCCcEEEEEeCCCCCChh-hHHHHHHHHhccCCeEEeeec
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENF---LRRE----KPHKHLFFILNKVDLVPIW-VTQRWVAILSKEYPTIAFHAS 311 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~----~~~k~~IlVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~S 311 (534)
.+.++|++|+|+|+.+|.+.. .+..+ +... ..+.|+|+|.||+||.... ........+.+.+....+.+|
T Consensus 70 ~~~~ad~iilV~D~t~~~s~~--~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iS 147 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSFE--NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVS 147 (215)
T ss_pred HhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEE
Confidence 367999999999999875542 23322 3221 1235788999999997432 222222333333334456789
Q ss_pred cCCCCChHHHHHHHHHHh
Q psy6781 312 MTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 312 a~~~~gi~~Li~~L~~~~ 329 (534)
|+++.|+++|++.|...+
T Consensus 148 Aktg~gv~~lf~~l~~~l 165 (215)
T cd04109 148 AKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998887543
No 224
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.01 E-value=2.9e-05 Score=70.50 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=55.0
Q ss_pred HhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPF 316 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~ 316 (534)
.+.++|.+++|+|..++.+..+ ..+..+... ...++|+++|.||+|+........-...+.+.+....+.+|++++.
T Consensus 69 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (162)
T cd04138 69 YMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQ 148 (162)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCC
Confidence 5668999999999876543211 111222221 2357899999999999764321111222222233456788999999
Q ss_pred ChHHHHHHHHH
Q psy6781 317 GKGSIINLLRQ 327 (534)
Q Consensus 317 gi~~Li~~L~~ 327 (534)
|++++++.|.+
T Consensus 149 gi~~l~~~l~~ 159 (162)
T cd04138 149 GVEEAFYTLVR 159 (162)
T ss_pred CHHHHHHHHHH
Confidence 99999887764
No 225
>PRK12739 elongation factor G; Reviewed
Probab=98.01 E-value=6.1e-06 Score=94.58 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=75.3
Q ss_pred ceEEEEEecCCCchhHHHHhhhCC-----CceeeC------------CCCCceeeeEEEE---eCccEEEEeCCCcccCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNK-----KVCKTA------------PVPGETKVWQYIT---LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~-----~~~~v~------------~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~ 396 (534)
-.+|+++|.+|+|||||+|+|+.. ....+. ..+|+|.+..... -+..+.|+||||...-.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 467999999999999999999742 111222 2457776543332 35689999999986321
Q ss_pred CCCcchHHHHHccc-------cccccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 397 TNVETDTEKVLRGV-------VRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 397 ~~~~~~~e~vL~gv-------v~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
. +....+..+ ...+.+......+...+.....+.+..+||+|... +..++++.+....+.
T Consensus 88 --~--e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~ 155 (691)
T PRK12739 88 --I--EVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGA 155 (691)
T ss_pred --H--HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 1 223333222 11222322334455556666778889999999764 566777877776654
No 226
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.00 E-value=1.2e-05 Score=73.62 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=36.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEe---CccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~---~~~i~liDtPGi~ 393 (534)
++|+++|.||||||||+|+|++..... ...|..+.+ ...+.. .-.+.++||||..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 478999999999999999999876422 222222211 111222 2367899999963
No 227
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.00 E-value=4.2e-05 Score=68.64 Aligned_cols=107 Identities=17% Similarity=0.256 Sum_probs=65.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|+||... .+.+| ...+..+|++++|+|+.++..... ..+.+++.. ...++|+++|+||
T Consensus 45 ~~~~~D~~g~~~-----------~~~~~---~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 110 (159)
T cd04159 45 TLKVWDLGGQPR-----------FRSMW---ERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNK 110 (159)
T ss_pred EEEEEECCCCHh-----------HHHHH---HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 345778998421 12223 345678999999999987533210 112222221 1247899999999
Q ss_pred CCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 284 VDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+|+.+......+...+.. ......+.+|++++.|++.+++.|.+
T Consensus 111 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 111 NDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 999765433334333321 11234678899999999999888764
No 228
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.00 E-value=1.3e-05 Score=73.85 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=37.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~ 393 (534)
.++|+++|.||||||||+|+|.+.... ....|..+.. ...+..+. .+.++||||..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 368999999999999999999976542 2223333322 22222322 57899999975
No 229
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.99 E-value=1.4e-05 Score=74.42 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=38.8
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeC-CCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTA-PVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~-~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
.++|+++|.||||||||+|+|.+....... +..|.+.....+... ..+.++||||..
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 368999999999999999999986543322 223433332333333 268899999953
No 230
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.99 E-value=5.3e-05 Score=69.37 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=56.6
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh-hCCCCcEEEEEeCCCCCChh--hHHHHHHHHhccCCeEEeeeccCC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR-EKPHKHLFFILNKVDLVPIW--VTQRWVAILSKEYPTIAFHASMTH 314 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~-~~~~k~~IlVLNKiDLv~~~--~~~~wl~~l~~~~p~v~f~~Sa~~ 314 (534)
..+.++|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+|+.+.. ....... +...+....+.+|+++
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~ 147 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQE-YADENGLLFFETSAKT 147 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHH-HHHHcCCEEEEEECCC
Confidence 35678999999999987643211 112222222 22568899999999997421 1122222 2222234578899999
Q ss_pred CCChHHHHHHHHHH
Q psy6781 315 PFGKGSIINLLRQF 328 (534)
Q Consensus 315 ~~gi~~Li~~L~~~ 328 (534)
+.|+.++++.|.+.
T Consensus 148 ~~~v~~l~~~l~~~ 161 (163)
T cd01860 148 GENVNELFTEIAKK 161 (163)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998887654
No 231
>PRK00007 elongation factor G; Reviewed
Probab=97.99 E-value=9.1e-06 Score=93.18 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=75.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhC---C--CceeeC------------CCCCceeeeEEE---EeCccEEEEeCCCcccCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRN---K--KVCKTA------------PVPGETKVWQYI---TLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~---~--~~~~v~------------~~pgtTk~~~~~---~~~~~i~liDtPGi~~p~ 396 (534)
-.+|+++|.+|+|||||+|+|+. . ....+. ..+|+|.+.... +-+..+.|+||||...-.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 45899999999999999999973 2 111222 245777654322 235689999999976322
Q ss_pred CCCcchHHHHHccc-------cccccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 397 TNVETDTEKVLRGV-------VRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 397 ~~~~~~~e~vL~gv-------v~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
. +....+..+ ...+.+......+...+.....+.+..+||+|... +...+++.+..+.+.
T Consensus 90 --~--ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 90 --I--EVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred --H--HHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 1 222223222 11222333344455666677778889999999763 566777888777665
No 232
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.98 E-value=1e-05 Score=73.89 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=37.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCC--ceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKK--VCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~--~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
+|+++|.+|||||||+++|.+.. .....+..|.+... +......+.++||||..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCH
Confidence 37899999999999999999863 33445555544321 12223468899999975
No 233
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.98 E-value=9.4e-06 Score=74.24 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=39.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCccc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~ 394 (534)
+|+++|.+|||||||+|+|++.......+..|.+.... ......+.++||||...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETV-EYKNVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEE-EECCEEEEEEECCCChh
Confidence 47899999999999999999887444444444443321 11245789999999653
No 234
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.98 E-value=5.4e-05 Score=69.86 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=59.6
Q ss_pred HHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEEeCCCCCChh-hHHHHHHHHhccCCeEEeeecc
Q psy6781 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFILNKVDLVPIW-VTQRWVAILSKEYPTIAFHASM 312 (534)
Q Consensus 238 ~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa 312 (534)
...+..+|++++|+|+.++.... .+..+ ++. ...+.|.|+|.||+|+.+.. ......+.+.+......+.+|+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 151 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFR--CLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSA 151 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeC
Confidence 44678999999999998653321 22222 232 22368889999999997543 2233444555544455778899
Q ss_pred CCCCChHHHHHHHHH
Q psy6781 313 THPFGKGSIINLLRQ 327 (534)
Q Consensus 313 ~~~~gi~~Li~~L~~ 327 (534)
+++.|+.++++.|.+
T Consensus 152 ~~~~gv~~l~~~i~~ 166 (169)
T cd04114 152 KESDNVEKLFLDLAC 166 (169)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999888764
No 235
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.98 E-value=8e-05 Score=84.14 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=71.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||..+ +..+....+..+|.+|+|+|+.++..... +..+......+.|+|+|+||+|
T Consensus 74 ~~lnLiDTPGh~d--------------F~~~v~~sl~~aD~aILVVDas~gv~~qt--~~~~~~~~~~~lpiIvViNKiD 137 (600)
T PRK05433 74 YILNLIDTPGHVD--------------FSYEVSRSLAACEGALLVVDASQGVEAQT--LANVYLALENDLEIIPVLNKID 137 (600)
T ss_pred EEEEEEECCCcHH--------------HHHHHHHHHHHCCEEEEEEECCCCCCHHH--HHHHHHHHHCCCCEEEEEECCC
Confidence 3456889999642 12334456779999999999998755432 2222211224789999999999
Q ss_pred CCChhh---HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhh
Q psy6781 286 LVPIWV---TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLH 332 (534)
Q Consensus 286 Lv~~~~---~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~ 332 (534)
+..... ...+.+.+. ..+..++.+|+.++.|++.|++.|.+.++..
T Consensus 138 l~~a~~~~v~~ei~~~lg-~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 138 LPAADPERVKQEIEDVIG-IDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred CCcccHHHHHHHHHHHhC-CCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 964321 122222221 1123467889999999999999998877644
No 236
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.97 E-value=4e-05 Score=72.61 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=57.8
Q ss_pred HHhhhcCEEEEEEeCCCCCCCC--cHHHHHHHHh-hCCCCcEEEEEeCCCCCCh---hhHHHHHHHHhc-----------
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTR--CAHIENFLRR-EKPHKHLFFILNKVDLVPI---WVTQRWVAILSK----------- 301 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~--~~~le~~L~~-~~~~k~~IlVLNKiDLv~~---~~~~~wl~~l~~----------- 301 (534)
..+..+|.+++|+|+.++.... ...+...+.. ...+.|+++|+||+||... .....++.....
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVS 161 (190)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccccccc
Confidence 4567899999999998663221 1223333321 2356899999999999643 333333322110
Q ss_pred -cCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 302 -EYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 302 -~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
..+...|.+||+++.|++++++.|.++
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 162 GIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 122446888999999999999988754
No 237
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.97 E-value=3.5e-05 Score=73.59 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=57.2
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---HhhCCCCcEEEEEeCCCCCCh----h--hHHHHHHHHhccCCeEEeee
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---RREKPHKHLFFILNKVDLVPI----W--VTQRWVAILSKEYPTIAFHA 310 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~~~~~k~~IlVLNKiDLv~~----~--~~~~wl~~l~~~~p~v~f~~ 310 (534)
.+.++|++++|+|+.++.+..+ +..++ ....+...+|+|.||+||... . ......+.+.+.+....|.+
T Consensus 69 ~~~~a~~iilv~D~t~~~s~~~--i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~ 146 (182)
T cd04128 69 VCNDAVAILFMFDLTRKSTLNS--IKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFC 146 (182)
T ss_pred HCcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEE
Confidence 5679999999999988755432 22232 222233445889999999631 1 12233334444444556888
Q ss_pred ccCCCCChHHHHHHHHHHh
Q psy6781 311 SMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 311 Sa~~~~gi~~Li~~L~~~~ 329 (534)
||+++.|+++|.+.|.+.+
T Consensus 147 SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 147 STSHSINVQKIFKIVLAKA 165 (182)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999998876543
No 238
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.97 E-value=4.9e-05 Score=69.61 Aligned_cols=105 Identities=15% Similarity=0.066 Sum_probs=66.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh--hCCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR--EKPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~--~~~~k~~IlVL 281 (534)
+..+.|+||.... .......+.++|.+|+|+|+.++.+.. .+..++ .. ...+.|+++|.
T Consensus 50 ~~~l~D~~g~~~~--------------~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~iv~ 113 (161)
T cd01863 50 KLAIWDTAGQERF--------------RTLTSSYYRGAQGVILVYDVTRRDTFT--NLETWLNELETYSTNNDIVKMLVG 113 (161)
T ss_pred EEEEEECCCchhh--------------hhhhHHHhCCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhCCCCCCcEEEEE
Confidence 4567899994211 111233467899999999998765432 333332 22 23578899999
Q ss_pred eCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 282 NKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
||+|+........-...+...+....+.+|++++.|++++++.|.+
T Consensus 114 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 114 NKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999974332222222233333445788899999999998887753
No 239
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.97 E-value=4.2e-05 Score=70.78 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=34.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceee-CCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v-~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+++|........ .+..+.+.......++ -.+.++||||-.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 4789999999999999999987543111 1111222111112222 257799999964
No 240
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.97 E-value=5.4e-05 Score=72.10 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=67.2
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVL 281 (534)
.-...+.|++|... .+.+|. ..+.++|++|+|+|+.++..... ..+.+.+.. ...++|+|||.
T Consensus 60 ~~~~~l~D~~G~~~-----------~~~~~~---~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~ 125 (182)
T PTZ00133 60 NLKFTMWDVGGQDK-----------LRPLWR---HYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFA 125 (182)
T ss_pred CEEEEEEECCCCHh-----------HHHHHH---HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEE
Confidence 34466789998421 122333 34679999999999987643211 123333322 12468999999
Q ss_pred eCCCCCChhhHHHHHHHHhcc----CCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 282 NKVDLVPIWVTQRWVAILSKE----YPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~~~----~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||+||............+... .....+.+||+++.|++++++.|.+.+
T Consensus 126 NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 126 NKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred eCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 999996532222222333221 123455789999999999999887543
No 241
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.96 E-value=4.6e-05 Score=74.99 Aligned_cols=100 Identities=20% Similarity=0.034 Sum_probs=59.9
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCC-----C--CcHHHHHHHHhhCCCCcE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMG-----T--RCAHIENFLRREKPHKHL 277 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~-----s--~~~~le~~L~~~~~~k~~ 277 (534)
.....+.||||.. .++..+...+..+|++|+|+|+.++.. . .......++. ....+|+
T Consensus 76 ~~~i~liDtpG~~--------------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i 140 (219)
T cd01883 76 KYRFTILDAPGHR--------------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGVKQL 140 (219)
T ss_pred CeEEEEEECCChH--------------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCCCeE
Confidence 3456788999942 234555667789999999999987521 1 1111222222 2223678
Q ss_pred EEEEeCCCCCC----hhhHHHHHHH----Hhcc-C---CeEEeeeccCCCCChH
Q psy6781 278 FFILNKVDLVP----IWVTQRWVAI----LSKE-Y---PTIAFHASMTHPFGKG 319 (534)
Q Consensus 278 IlVLNKiDLv~----~~~~~~wl~~----l~~~-~---p~v~f~~Sa~~~~gi~ 319 (534)
|+|+||+|+.. ........+. +... + ...++.+||.++.|+.
T Consensus 141 iivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 141 IVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 88999999983 2222222222 2221 2 2447889999998865
No 242
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.96 E-value=5.7e-05 Score=69.96 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=57.4
Q ss_pred HHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh----hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeecc
Q psy6781 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR----EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASM 312 (534)
Q Consensus 238 ~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~----~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa 312 (534)
...+.++|.+|+|+|+.+|.+. ..+..++.. ..++.|+++|.||+||..... .......+.+......|.+|+
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 146 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSA 146 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEEC
Confidence 3456799999999999987543 234455432 235678999999999965321 112222232333445678899
Q ss_pred CCCCChHHHHHHHH
Q psy6781 313 THPFGKGSIINLLR 326 (534)
Q Consensus 313 ~~~~gi~~Li~~L~ 326 (534)
+++.|+.++...|.
T Consensus 147 ~~~~~i~e~f~~l~ 160 (166)
T cd04122 147 KTGENVEDAFLETA 160 (166)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999998776554
No 243
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.96 E-value=6.3e-06 Score=78.76 Aligned_cols=105 Identities=23% Similarity=0.226 Sum_probs=61.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce--e---------------eCCCCCceee---eEEE--EeCccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC--K---------------TAPVPGETKV---WQYI--TLMRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~--~---------------v~~~pgtTk~---~~~~--~~~~~i~liDtPGi~ 393 (534)
+.++|+++|..++|||||+++|...... . .....|.|.. ..+. .....+.|+||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4678999999999999999999853211 0 0112344443 2333 345689999999964
Q ss_pred cCCCCCcchHHHHHccc------cc-cccCCCchhhHHHHHHhhccceeeehcCCCCC
Q psy6781 394 YDMTNVETDTEKVLRGV------VR-VENIDDPVQYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 394 ~p~~~~~~~~e~vL~gv------v~-v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
.-. ......+..+ +. .+.+.........++.....+.+..+||+|..
T Consensus 82 ~f~----~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFI----KEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHH----HHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS
T ss_pred cee----ecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch
Confidence 211 1122222221 11 12222222334455666677799999999987
No 244
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.96 E-value=4.7e-05 Score=71.24 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=57.7
Q ss_pred HHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---hh--CCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeec
Q psy6781 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---RE--KPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHAS 311 (534)
Q Consensus 238 ~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~~--~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~S 311 (534)
...+.++|++|+|.|+.++.+.. .+..++. .. ..+.|+++|.||+||.+... ...-...+.+.+....|.+|
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 158 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFL--NVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETS 158 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEe
Confidence 34567999999999998765432 2333332 11 24678999999999975321 11112223222333467889
Q ss_pred cCCCCChHHHHHHHHHH
Q psy6781 312 MTHPFGKGSIINLLRQF 328 (534)
Q Consensus 312 a~~~~gi~~Li~~L~~~ 328 (534)
++++.|++++++.|.+.
T Consensus 159 ak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 159 AATGTNVEKAVERLLDL 175 (180)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999888653
No 245
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.96 E-value=4.4e-05 Score=82.53 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=66.5
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCC--CCCCcHHHHHHHHhhCCC-CcEEEE
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDP--MGTRCAHIENFLRREKPH-KHLFFI 280 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~P--l~s~~~~le~~L~~~~~~-k~~IlV 280 (534)
...+..+.||||.. .+++.+...+..+|++|+|+|+.++ ..........++.. .+ .++|+|
T Consensus 82 ~~~~i~liDtpG~~--------------~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivv 145 (425)
T PRK12317 82 DKYYFTIVDCPGHR--------------DFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVA 145 (425)
T ss_pred CCeEEEEEECCCcc--------------cchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEE
Confidence 44567789999942 1234445557899999999999983 33332233333332 24 468899
Q ss_pred EeCCCCCCh--hhHH---HHHH-HHhc-cC---CeEEeeeccCCCCChHH------------HHHHHHHH
Q psy6781 281 LNKVDLVPI--WVTQ---RWVA-ILSK-EY---PTIAFHASMTHPFGKGS------------IINLLRQF 328 (534)
Q Consensus 281 LNKiDLv~~--~~~~---~wl~-~l~~-~~---p~v~f~~Sa~~~~gi~~------------Li~~L~~~ 328 (534)
+||+||++. .... ..+. .+.. .+ ...+|.+|+.++.|+.. |+++|..+
T Consensus 146 iNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~ 215 (425)
T PRK12317 146 INKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNL 215 (425)
T ss_pred EEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcC
Confidence 999999752 1111 1222 2221 12 13478889999999865 66676553
No 246
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.95 E-value=7.7e-05 Score=79.97 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=67.0
Q ss_pred ccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEE-E
Q psy6781 201 YKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLF-F 279 (534)
Q Consensus 201 ~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~I-l 279 (534)
|..+..+..+.||||.. +++..+...+..+|++++|+||+.+..........++.. .++|.+ +
T Consensus 70 ~~~~~~~~~liDtpGh~--------------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIv 133 (394)
T TIGR00485 70 YETENRHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVV 133 (394)
T ss_pred EcCCCEEEEEEECCchH--------------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEE
Confidence 44345567899999942 233555667789999999999997544333333334432 467765 6
Q ss_pred EEeCCCCCChhhHH-----HHHHHHhcc-CC---eEEeeeccCCCC--------ChHHHHHHHHHHh
Q psy6781 280 ILNKVDLVPIWVTQ-----RWVAILSKE-YP---TIAFHASMTHPF--------GKGSIINLLRQFS 329 (534)
Q Consensus 280 VLNKiDLv~~~~~~-----~wl~~l~~~-~p---~v~f~~Sa~~~~--------gi~~Li~~L~~~~ 329 (534)
|+||+|+++.+... ...+.+... +. ..++.+|+.++. +...|++.|..+.
T Consensus 134 vvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 134 FLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred EEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 89999998753221 122222221 11 235677887653 2345666665544
No 247
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.95 E-value=8.5e-05 Score=80.06 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=69.2
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
+..+..+.||||.. .+...+...+..+|++|+|+||..+..........++... ..+++|+|+||
T Consensus 78 ~~~~~~liDtPGh~--------------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK 142 (406)
T TIGR02034 78 DKRKFIVADTPGHE--------------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNK 142 (406)
T ss_pred CCeEEEEEeCCCHH--------------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEe
Confidence 34577899999932 2334455678899999999999987765544444443321 23467889999
Q ss_pred CCCCChh--hHHHHHHHH----hc-cCC-eEEeeeccCCCCChHH------------HHHHHHHH
Q psy6781 284 VDLVPIW--VTQRWVAIL----SK-EYP-TIAFHASMTHPFGKGS------------IINLLRQF 328 (534)
Q Consensus 284 iDLv~~~--~~~~wl~~l----~~-~~p-~v~f~~Sa~~~~gi~~------------Li~~L~~~ 328 (534)
+|+++.. ......+.+ .. .+. ..++++|+.++.|+.. |+++|..+
T Consensus 143 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~ 207 (406)
T TIGR02034 143 MDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETV 207 (406)
T ss_pred cccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhc
Confidence 9998532 111112222 21 111 2467889999988764 67777654
No 248
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.95 E-value=1.6e-05 Score=72.68 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=36.4
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCcee--eeEEEEeCc---cEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK--VWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk--~~~~~~~~~---~i~liDtPGi~ 393 (534)
++|+++|.||||||||+|+|.+... .....+..+. ....+..+. .+.++||||..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 4799999999999999999998764 2222222222 222233332 57899999953
No 249
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.95 E-value=6.5e-05 Score=68.62 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=54.6
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---hh------CCCCcEEEEEeCCCCCCh-----hhHHHHHHHHhccCCe
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFLR---RE------KPHKHLFFILNKVDLVPI-----WVTQRWVAILSKEYPT 305 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~~------~~~k~~IlVLNKiDLv~~-----~~~~~wl~~l~~~~p~ 305 (534)
.+..+|++|+|+|++++.+. ..+..++. .. ..+.|+++|.||+|+.+. .....|.. ....
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~ 142 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSF--EALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE----SKGF 142 (168)
T ss_pred HhccCCEEEEEEECCCHHHH--HhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH----HcCC
Confidence 46789999999999977432 12333322 11 146899999999999732 22223332 2223
Q ss_pred EEeeeccCCCCChHHHHHHHHH
Q psy6781 306 IAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 306 v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
..|.+|++++.|+.++++.|..
T Consensus 143 ~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 143 KYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999888764
No 250
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.94 E-value=1.7e-05 Score=80.77 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=66.2
Q ss_pred eEEEEEecCCCchhHHHHhhhCCC--ceeeCCCC-----Cce--------------eee---EEEEeCccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKK--VCKTAPVP-----GET--------------KVW---QYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~--~~~v~~~p-----gtT--------------k~~---~~~~~~~~i~liDtPGi~ 393 (534)
.+|+++|.+|+|||||+|+|+... +...+.+. |.| -.. .+..-+..+.|+||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 368999999999999999998421 11111111 111 111 111224579999999975
Q ss_pred cCCCCCcchHHHHHcccc------cc-ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 394 YDMTNVETDTEKVLRGVV------RV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 394 ~p~~~~~~~~e~vL~gvv------~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
.-. .+....+.++. .. ..+......+..++...+.+.+...||+|... +..+.++.+....|.
T Consensus 83 df~----~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 83 DFS----EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGI 153 (267)
T ss_pred HHH----HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCC
Confidence 321 11222332221 11 11211123344445555677888999999653 456678888776663
No 251
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.94 E-value=5.6e-05 Score=71.41 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=57.1
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---HhhCCCCcEEEEEeCCCCCChh-----hHHHHHHHHhccCCe-EEeee
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---RREKPHKHLFFILNKVDLVPIW-----VTQRWVAILSKEYPT-IAFHA 310 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~~~~~k~~IlVLNKiDLv~~~-----~~~~wl~~l~~~~p~-v~f~~ 310 (534)
.+.++|++|+|.|+.++.+..+ ....++ ....++.|+|+|.||+||.+.. ....-...+...+.. ..|.+
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDN-VEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 4679999999999987654432 112232 2224578999999999996531 011112222222222 46888
Q ss_pred ccCCCCChHHHHHHHHHHh
Q psy6781 311 SMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 311 Sa~~~~gi~~Li~~L~~~~ 329 (534)
|++++.|+.++++.|...+
T Consensus 148 Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999888776543
No 252
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.93 E-value=1.8e-05 Score=70.32 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=62.8
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.|+||..... .+....+++....+...|+++.|+|+..+.......+.+++ ..+.|+++|+||+|+
T Consensus 51 ~~~~~D~~G~~~~~-------~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~ 120 (161)
T TIGR00231 51 KFNLLDTAGQEDYR-------AIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA---ESNVPIILVGNKIDL 120 (161)
T ss_pred EEEEEECCCcccch-------HHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc---ccCCcEEEEEEcccC
Confidence 45678999942211 12223333444445555666665555543311111222221 127899999999999
Q ss_pred CChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 287 VPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 287 v~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
............+........+.+|+.++.|+..+.++|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 121 RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 8754333333344333233478889999999999988875
No 253
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.93 E-value=2.5e-05 Score=74.21 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=37.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe----CccEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL----MRRIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~----~~~i~liDtPGi~ 393 (534)
.++|+++|.+|||||||||++.........+..|.+.....+.. .-.+.++||||..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 57899999999999999999987654322222232222111211 2368999999964
No 254
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.92 E-value=5.8e-05 Score=69.66 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=57.2
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh---h-CCCCcEEEEEeCCCCCChhhH-HHHHHHHhccCCeEEeeeccC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR---E-KPHKHLFFILNKVDLVPIWVT-QRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~---~-~~~k~~IlVLNKiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
..+.++|.+|+|+|+.++.+. ..+..++.. . ..+.|+|+|.||+|+...... ..-...+.+.+....+.+|++
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~--~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAK 147 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence 456789999999999876432 233344322 1 246899999999999654211 111222223333456788999
Q ss_pred CCCChHHHHHHHHHH
Q psy6781 314 HPFGKGSIINLLRQF 328 (534)
Q Consensus 314 ~~~gi~~Li~~L~~~ 328 (534)
++.|++++++.|.+.
T Consensus 148 ~~~~v~~~~~~i~~~ 162 (166)
T cd01869 148 NATNVEQAFMTMARE 162 (166)
T ss_pred CCcCHHHHHHHHHHH
Confidence 999999988877643
No 255
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.92 E-value=9e-05 Score=68.66 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=57.5
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh---h-CCCCcEEEEEeCCCCCChhhH-HHHHHHHhccCCeEEeeeccC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR---E-KPHKHLFFILNKVDLVPIWVT-QRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~---~-~~~k~~IlVLNKiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
..+.++|++++|+|+.++... ..+..++.. . ....|+++|.||+||.+.... ..-...+...+....|.+|++
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAK 146 (165)
T ss_pred HHccCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECC
Confidence 446799999999999866432 234444332 2 246789999999999754311 111122222333346888999
Q ss_pred CCCChHHHHHHHHHH
Q psy6781 314 HPFGKGSIINLLRQF 328 (534)
Q Consensus 314 ~~~gi~~Li~~L~~~ 328 (534)
++.|+++|++.|...
T Consensus 147 ~~~gv~~l~~~l~~~ 161 (165)
T cd01865 147 ENINVKQVFERLVDI 161 (165)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999998887654
No 256
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.92 E-value=1.7e-05 Score=89.30 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=65.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--Ee-Cc-cEEEEeCCCcccCCCCCcchHHHHHcc--
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TL-MR-RIYLIDCPGVVYDMTNVETDTEKVLRG-- 409 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~-~~-~i~liDtPGi~~p~~~~~~~~e~vL~g-- 409 (534)
+...|+++|.+|+|||||+|+|++.... ....+|.|.+.... .. +. .+.|+||||...-. ......+..
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~----~~r~rga~~aD 160 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT----SMRARGAKVTD 160 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcchh----hHHHhhhccCC
Confidence 4578999999999999999999987653 34567888764332 22 33 79999999964221 011111111
Q ss_pred ----ccccc-cCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHH
Q psy6781 410 ----VVRVE-NIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKK 453 (534)
Q Consensus 410 ----vv~v~-~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~ 453 (534)
++..+ .+..........+.....+.+...||+|... +.+++...
T Consensus 161 iaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~ 210 (587)
T TIGR00487 161 IVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQE 210 (587)
T ss_pred EEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHH
Confidence 11111 1111111122334445667888999999753 44444333
No 257
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.92 E-value=2.2e-05 Score=72.92 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=37.4
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
.++|+++|.||||||||+|++.+..... ..+..|.+.....+..+. .+.|+||||..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 4789999999999999999999765311 122223322222233332 57899999964
No 258
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.91 E-value=1.6e-05 Score=89.46 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=59.0
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCce--eeCCCCCceeeeEEE--Ee-CccEEEEeCCCcccCC---CCCcchHHHHHcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVC--KTAPVPGETKVWQYI--TL-MRRIYLIDCPGVVYDM---TNVETDTEKVLRG 409 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~--~v~~~pgtTk~~~~~--~~-~~~i~liDtPGi~~p~---~~~~~~~e~vL~g 409 (534)
+.|+++|.+|+|||||+|+|++.... .....+|+|.+..+. .+ +..+.++||||...-. ......++.++.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL- 79 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALL- 79 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEE-
Confidence 36899999999999999999975421 122346777664432 22 3478899999953110 000011111111
Q ss_pred ccccc-cCC-CchhhHHHHHHhhccc-eeeehcCCCCCC
Q psy6781 410 VVRVE-NID-DPVQYIDAVLERIKKV-HLVKTYGIDEWE 445 (534)
Q Consensus 410 vv~v~-~i~-~~~~~i~~iL~r~~k~-~l~~~ykId~~~ 445 (534)
++.+. .+. .-.+++ .++.....+ .+.+.||+|...
T Consensus 80 VVDa~~G~~~qT~ehl-~il~~lgi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 80 VVDADEGVMTQTGEHL-AVLDLLGIPHTIVVITKADRVN 117 (581)
T ss_pred EEECCCCCcHHHHHHH-HHHHHcCCCeEEEEEECCCCCC
Confidence 11111 111 111232 345555555 788999999764
No 259
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.91 E-value=9e-05 Score=64.60 Aligned_cols=107 Identities=19% Similarity=0.099 Sum_probs=67.8
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHH--HHH-HhhCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIE--NFL-RREKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le--~~L-~~~~~~k~~IlVLN 282 (534)
....+.|++|..... ......+..+|.+++|+|+..|......... ..+ .....++|.++|+|
T Consensus 45 ~~~~l~D~~g~~~~~--------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 45 VKLQIWDTAGQERFR--------------SLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred EEEEEEecCChHHHH--------------hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 345688999953211 1114566799999999999987554322211 111 22446899999999
Q ss_pred CCCCCChhhHHHH--HHHHhccCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 283 KVDLVPIWVTQRW--VAILSKEYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 283 KiDLv~~~~~~~w--l~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
|+|+.+....... ...+........|.+|+.++.|+..+++.|.
T Consensus 111 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 111 KIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 9999866433332 1222222334467788999999999888764
No 260
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.91 E-value=8.6e-05 Score=75.84 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=51.5
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
..+..+.||||.++ +..++...+..+|++|+|+|+..........+.+++.. .++|.|+++||+
T Consensus 63 ~~~i~liDTPG~~d--------------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~ 126 (270)
T cd01886 63 DHRINIIDTPGHVD--------------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKM 126 (270)
T ss_pred CEEEEEEECCCcHH--------------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 56778899999542 23456678889999999999987765554455555543 578999999999
Q ss_pred CCCC
Q psy6781 285 DLVP 288 (534)
Q Consensus 285 DLv~ 288 (534)
|+..
T Consensus 127 D~~~ 130 (270)
T cd01886 127 DRTG 130 (270)
T ss_pred CCCC
Confidence 9974
No 261
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.90 E-value=2.1e-05 Score=72.16 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=36.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+|+|.+..... ..+..|.......+..+ -.+.|+||||..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence 478999999999999999999765321 22222322222222332 257899999964
No 262
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.90 E-value=3.8e-05 Score=71.37 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=57.0
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhh-H------------HHHHHHHhccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWV-T------------QRWVAILSKEYP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~-~------------~~wl~~l~~~~p 304 (534)
.+.++|++|+|.|+.++.+.... .+...+....+++|+|+|.||+||.+... . ..-...+.+...
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG 145 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC
Confidence 46689999999999877544321 12223333456899999999999975321 1 011112222233
Q ss_pred -eEEeeeccCCCCChHHHHHHHHH
Q psy6781 305 -TIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 305 -~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
...|.+|++++.|+++|.+.|..
T Consensus 146 ~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 146 AVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHH
Confidence 24678899999999999887764
No 263
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.90 E-value=7.2e-05 Score=72.13 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=59.4
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---HhhCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccCC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RREKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTH 314 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~ 314 (534)
..+.++|.+|+|+|+.++.+.. .+..++ .......|+++|.||+||.+... .......+...+....|.+|+.+
T Consensus 74 ~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 151 (199)
T cd04110 74 TYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKE 151 (199)
T ss_pred HHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCC
Confidence 3567899999999998875432 333333 23345689999999999976422 11222223333345578899999
Q ss_pred CCChHHHHHHHHHH
Q psy6781 315 PFGKGSIINLLRQF 328 (534)
Q Consensus 315 ~~gi~~Li~~L~~~ 328 (534)
+.|+..|++.|...
T Consensus 152 ~~gi~~lf~~l~~~ 165 (199)
T cd04110 152 NINVEEMFNCITEL 165 (199)
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999888654
No 264
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.90 E-value=0.0001 Score=83.86 Aligned_cols=112 Identities=20% Similarity=0.136 Sum_probs=70.5
Q ss_pred ccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEe
Q psy6781 203 EEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILN 282 (534)
Q Consensus 203 ~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLN 282 (534)
.+..+..+.||||.. .+...+...+..+|++|+|+|+..+..........++... ..+++|+|+|
T Consensus 101 ~~~~~~~liDtPG~~--------------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvN 165 (632)
T PRK05506 101 TPKRKFIVADTPGHE--------------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVN 165 (632)
T ss_pred cCCceEEEEECCChH--------------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEE
Confidence 346678899999942 1233344568899999999999887665444444444321 2357788999
Q ss_pred CCCCCC--hhhHHHHHHHH----hc-cCC-eEEeeeccCCCCChH------------HHHHHHHHHh
Q psy6781 283 KVDLVP--IWVTQRWVAIL----SK-EYP-TIAFHASMTHPFGKG------------SIINLLRQFS 329 (534)
Q Consensus 283 KiDLv~--~~~~~~wl~~l----~~-~~p-~v~f~~Sa~~~~gi~------------~Li~~L~~~~ 329 (534)
|+|+++ .+........+ .. .+. ..++++|+.++.|+. .|+++|..+.
T Consensus 166 K~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~ 232 (632)
T PRK05506 166 KMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVE 232 (632)
T ss_pred ecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCC
Confidence 999985 22222222222 12 222 236788999998876 4777777653
No 265
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.90 E-value=8.1e-05 Score=70.93 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=66.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|++|.. .-+.+|.. .+.++|++|+|+|+.++..... ..+.+++.. ..++.|++||.||
T Consensus 62 ~~~i~D~~Gq~-----------~~~~~~~~---~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK 127 (181)
T PLN00223 62 SFTVWDVGGQD-----------KIRPLWRH---YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
T ss_pred EEEEEECCCCH-----------HHHHHHHH---HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEEC
Confidence 45567999831 11223433 4578999999999997643211 122233321 2247899999999
Q ss_pred CCCCChhhHHHHHHHHhccC----CeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 284 VDLVPIWVTQRWVAILSKEY----PTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~~~----p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
+||..........+.+.-.. +...+.+||+++.|+.++++.|.+.
T Consensus 128 ~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 128 QDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred CCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence 99965433333333332111 1235568999999999998888653
No 266
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.90 E-value=2.2e-05 Score=73.70 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=38.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-CccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-MRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi~ 393 (534)
+.++|+++|.+|||||||+++|.........+..|.+. ..+.. .-.+.|+||||..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccce--EEEEECCEEEEEEECCCCH
Confidence 46899999999999999999998654333322223222 12222 3468999999974
No 267
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.90 E-value=8.9e-05 Score=67.57 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=56.9
Q ss_pred HHhhhcCEEEEEEeCCCCCCCC--cHHHHHHHHh-hCCCCcEEEEEeCCCCCChh--hHHHHHHHHhccCCeEEeeeccC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTR--CAHIENFLRR-EKPHKHLFFILNKVDLVPIW--VTQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~--~~~le~~L~~-~~~~k~~IlVLNKiDLv~~~--~~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
..+..+|.+++|+|..+|.+.. ...+..++.. ...++|+++|+||+|+.+.. ....... +...+....|.+|+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~ 145 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-LARQWGVPYVETSAK 145 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-HHHHhCCeEEEeeCC
Confidence 4667999999999998764321 1223333332 23579999999999997621 1111111 222222346788999
Q ss_pred CCCChHHHHHHHHHH
Q psy6781 314 HPFGKGSIINLLRQF 328 (534)
Q Consensus 314 ~~~gi~~Li~~L~~~ 328 (534)
++.|+++|.+.|...
T Consensus 146 ~~~gi~~l~~~l~~~ 160 (164)
T cd04139 146 TRQNVEKAFYDLVRE 160 (164)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999998887654
No 268
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.89 E-value=7.1e-05 Score=68.40 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=56.4
Q ss_pred HhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh--hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccCCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR--EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHP 315 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~--~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~ 315 (534)
.+.++|.+++|+|..++.+... ..+...+.. ...++|+|+|.||+||.+... .......+.+.+....|.+|++++
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd04136 69 YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSK 148 (163)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence 3568999999999987654321 111122322 235789999999999975321 112222333333345688899999
Q ss_pred CChHHHHHHHHH
Q psy6781 316 FGKGSIINLLRQ 327 (534)
Q Consensus 316 ~gi~~Li~~L~~ 327 (534)
.|+.+|++.|.+
T Consensus 149 ~~v~~l~~~l~~ 160 (163)
T cd04136 149 INVDEVFADLVR 160 (163)
T ss_pred CCHHHHHHHHHH
Confidence 999999887764
No 269
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.89 E-value=4.6e-05 Score=70.63 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=65.3
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh----hCCCCcEEEEEe
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR----EKPHKHLFFILN 282 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~----~~~~k~~IlVLN 282 (534)
..+.||+|.... ..++ ...+..+|.+|+|.|..++.+... ..+..++.. ..++.|+++|.|
T Consensus 51 l~i~Dt~G~~~~-----------~~~~---~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 51 LQITDTTGSHQF-----------PAMQ---RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred EEEEECCCCCcc-----------hHHH---HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 457899996421 1122 124568999999999987754321 112222332 125789999999
Q ss_pred CCCCCChhhH-HHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 283 KVDLVPIWVT-QRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 283 KiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|+||.+.... ..-...+...+....|.+||+++.|++++++.|.++
T Consensus 117 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 117 KCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 9999753211 111122222233345788999999999998888654
No 270
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.89 E-value=0.0001 Score=70.32 Aligned_cols=88 Identities=16% Similarity=0.106 Sum_probs=56.9
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhh----CCCCcEEEEEeCCCCCChhhH-HHHHHHHhccCCeEEeeec
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENF---LRRE----KPHKHLFFILNKVDLVPIWVT-QRWVAILSKEYPTIAFHAS 311 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~----~~~k~~IlVLNKiDLv~~~~~-~~wl~~l~~~~p~v~f~~S 311 (534)
.+..+|++|+|+|..++.+.. .+..+ +... ..+.|+|+|.||+||...... ..-...+...+....|.+|
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 144 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFE--RVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEAS 144 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEec
Confidence 466899999999998765432 23333 2211 246899999999999643211 1111222232334468899
Q ss_pred cCCCCChHHHHHHHHHHh
Q psy6781 312 MTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 312 a~~~~gi~~Li~~L~~~~ 329 (534)
|+++.|++++++.|.+.+
T Consensus 145 Ak~~~~v~~l~~~l~~~l 162 (190)
T cd04144 145 AKTNVNVERAFYTLVRAL 162 (190)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999988887644
No 271
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.88 E-value=2.7e-05 Score=71.91 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=36.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeC-CCCCceeeeEEEEeCc---cEEEEeCCCc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTA-PVPGETKVWQYITLMR---RIYLIDCPGV 392 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~-~~pgtTk~~~~~~~~~---~i~liDtPGi 392 (534)
.++|+++|.+|||||||+++|......... ...|.......+..+. .+.|+||||-
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 478999999999999999999875432211 1222211222233332 6789999995
No 272
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.88 E-value=0.00012 Score=68.06 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=56.8
Q ss_pred HHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh----hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeecc
Q psy6781 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR----EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASM 312 (534)
Q Consensus 238 ~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~----~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa 312 (534)
...+.++|++|+|.|+.++.+. ..+.+++.. ...+.|+++|.||+||..... ...-...+.+......+.+|+
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSF--ENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSA 147 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 3456899999999999876442 234444421 124689999999999974321 111111122222334688899
Q ss_pred CCCCChHHHHHHHHH
Q psy6781 313 THPFGKGSIINLLRQ 327 (534)
Q Consensus 313 ~~~~gi~~Li~~L~~ 327 (534)
.++.|++++++.|..
T Consensus 148 ~~~~~v~~~~~~i~~ 162 (167)
T cd01867 148 KANINVEEAFFTLAK 162 (167)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999998887764
No 273
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.88 E-value=2.3e-05 Score=74.55 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=36.5
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCce--eeCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVC--KTAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~--~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
++|+++|.+|||||||||+|.+.... ...+..|.+.....+.++. .+.++||||..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence 37899999999999999999976532 1222223222222333332 46699999964
No 274
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.87 E-value=7.9e-05 Score=71.78 Aligned_cols=89 Identities=15% Similarity=0.075 Sum_probs=57.3
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-----hCCCCcEEEEEeCCCCCCh-hhHHHHHHHHhccCC-eEEe
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-----EKPHKHLFFILNKVDLVPI-WVTQRWVAILSKEYP-TIAF 308 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-----~~~~k~~IlVLNKiDLv~~-~~~~~wl~~l~~~~p-~v~f 308 (534)
..+.++|.+|+|+|..+|.+.. .+..++ .. ...+.|+|||.||+||.+. ......+..+.+.+. ...|
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~--~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFE--AVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWF 146 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEE
Confidence 3467999999999998875542 222221 11 1256899999999999732 111222223323233 3467
Q ss_pred eeccCCCCChHHHHHHHHHHh
Q psy6781 309 HASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 309 ~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
.+|++++.|++++++.|.+.+
T Consensus 147 e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 147 ETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 889999999999988887543
No 275
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.87 E-value=2.6e-05 Score=70.86 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=35.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~ 393 (534)
++|+++|.||||||||+|+|.+.... ...+.++... ..+.++. .+.++||||..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 57999999999999999999976531 2222222221 1122222 36789999964
No 276
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.87 E-value=0.00021 Score=80.74 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=72.5
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.+.||||.. .+..++...+..+|.+|+|+||..........+.+.+.. .++|+|+|+||+
T Consensus 63 ~~kinlIDTPGh~--------------DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKi 126 (594)
T TIGR01394 63 GTKINIVDTPGHA--------------DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKI 126 (594)
T ss_pred CEEEEEEECCCHH--------------HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECC
Confidence 4456688999942 123456778889999999999986543333333333332 578999999999
Q ss_pred CCCCh---hhHHHHHHHHhc------cCCeEEeeeccCCCC----------ChHHHHHHHHHHhhhh
Q psy6781 285 DLVPI---WVTQRWVAILSK------EYPTIAFHASMTHPF----------GKGSIINLLRQFSKLH 332 (534)
Q Consensus 285 DLv~~---~~~~~wl~~l~~------~~p~v~f~~Sa~~~~----------gi~~Li~~L~~~~~~~ 332 (534)
|+... .......+.|.. .....++.+|+.++. |+..|++.+.++++..
T Consensus 127 D~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 127 DRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred CCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 99643 223333333421 111235667888875 7888888888877644
No 277
>PRK12736 elongation factor Tu; Reviewed
Probab=97.87 E-value=1.1e-05 Score=86.54 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=42.6
Q ss_pred cccceEEEEEecCCCchhHHHHhhhCCC------ceee---------CCCCCceeeeEEEEe---CccEEEEeCCCcc
Q psy6781 334 ERKQISVGFIGYPNVGKSSIINALRNKK------VCKT---------APVPGETKVWQYITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 334 ~~~~~~v~vvG~pnvGKSSliN~L~~~~------~~~v---------~~~pgtTk~~~~~~~---~~~i~liDtPGi~ 393 (534)
.+..++|+++|.+++|||||+++|++.. .... ....|+|.+...... ...+.|+||||..
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 3568999999999999999999998621 1111 115678876544433 3578999999953
No 278
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.86 E-value=7.9e-05 Score=70.86 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=57.8
Q ss_pred HhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHhhCCCCcEEEEEeCCCCCChh-----hHHHHHHHHhccCCeEEeeeccC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRC-AHIENFLRREKPHKHLFFILNKVDLVPIW-----VTQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~~~~~k~~IlVLNKiDLv~~~-----~~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
.+.++|++|+|+|+.++.+... ..+.+.+....++.|+++|.||+||.+.. .....+..+...+....|.+|++
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 149 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSK 149 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 4568999999999987643221 11222233333578999999999997532 11122233333333446788999
Q ss_pred CCCChHHHHHHHHHHh
Q psy6781 314 HPFGKGSIINLLRQFS 329 (534)
Q Consensus 314 ~~~gi~~Li~~L~~~~ 329 (534)
++.|++.|++.|.+.+
T Consensus 150 ~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 150 TGQNVDELFQKVAEDF 165 (193)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887654
No 279
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.86 E-value=7e-05 Score=84.49 Aligned_cols=112 Identities=17% Similarity=0.078 Sum_probs=70.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
+..+.||||..+.... ....++++. +.....+|+|+.|+|+.+. .++..+...+. ..++|+++|+||+|+
T Consensus 42 ~i~lvDtPG~~~~~~~-----s~~e~v~~~-~l~~~~aDvvI~VvDat~l--er~l~l~~ql~--~~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTF-----SLEEEVARD-YLLNEKPDLVVNVVDASNL--ERNLYLTLQLL--ELGIPMILALNLVDE 111 (591)
T ss_pred EEEEEECCCccccCcc-----chHHHHHHH-HHhhcCCCEEEEEecCCcc--hhhHHHHHHHH--hcCCCEEEEEehhHH
Confidence 4568899997542210 112233332 2234589999999999863 22222222222 257999999999999
Q ss_pred CChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 287 VPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 287 v~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
........-.+.+.+.....++.+|++++.|+++|.+.+.+.
T Consensus 112 ~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 112 AEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred HHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 754332222344544444456778999999999999988764
No 280
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.85 E-value=3e-05 Score=69.63 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=35.0
Q ss_pred EEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE-eCccEEEEeCCCcc
Q psy6781 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT-LMRRIYLIDCPGVV 393 (534)
Q Consensus 340 v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~-~~~~i~liDtPGi~ 393 (534)
|+++|.+|||||||+|+|.+.... ....|.+......+. ....+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 789999999999999999987532 222333222211111 22468899999964
No 281
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.85 E-value=2.7e-05 Score=71.52 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=35.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCccc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~~ 394 (534)
+|+++|.||||||||+|+|.+..... ..+.++.+. ..+..+ -.+.++||||...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 60 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 68999999999999999999765322 222222221 112222 2577899999653
No 282
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.85 E-value=2.9e-05 Score=73.53 Aligned_cols=56 Identities=21% Similarity=0.425 Sum_probs=39.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-CccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-MRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi~ 393 (534)
...+|+++|.+|||||||+|+|.+.......+..+.+. ..+.. +..+.++||||..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCH
Confidence 46789999999999999999999866533333333322 12222 3468899999953
No 283
>KOG2486|consensus
Probab=97.85 E-value=3.1e-05 Score=78.61 Aligned_cols=61 Identities=31% Similarity=0.399 Sum_probs=50.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-eeC-CCCCceeeeEEEEeCccEEEEeCCCcccCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-KTA-PVPGETKVWQYITLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~-~~pgtTk~~~~~~~~~~i~liDtPGi~~p~ 396 (534)
+...++++|.+|||||||||.|...+.. .++ ..+|-|+..+.+..+...+++|.||+....
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~ 197 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAG 197 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCccccc
Confidence 5678999999999999999999986543 233 389999999999999999999999965433
No 284
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.85 E-value=0.00012 Score=68.85 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=56.1
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH----hhCC-CCcEEEEEeCCCCCChhh---HHHHHHHHhccCCeEEeee
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFLR----REKP-HKHLFFILNKVDLVPIWV---TQRWVAILSKEYPTIAFHA 310 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~----~~~~-~k~~IlVLNKiDLv~~~~---~~~wl~~l~~~~p~v~f~~ 310 (534)
..+..+|++|+|.|+.++.+.. .+.+++. ...+ ..|+|+|.||+||.+... ...-...+...+....+.+
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~ 145 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLE--HTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSV 145 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEE
Confidence 3467999999999998753321 2333332 2222 245789999999975432 1111222223333445778
Q ss_pred ccCCCCChHHHHHHHHHHh
Q psy6781 311 SMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 311 Sa~~~~gi~~Li~~L~~~~ 329 (534)
|++.+.|++.|.+.|.+.+
T Consensus 146 Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 146 SALSGENVREFFFRVAALT 164 (170)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999988887654
No 285
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.84 E-value=8.3e-05 Score=68.27 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=56.3
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh--hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR--EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~--~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
.+.++|.+++|+|+.++.+.. .+..+ +.. ...++|+|+|.||+||.+... ...-...+.+.+....|.+|++
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFE--EIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAK 145 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecC
Confidence 456899999999998764421 22222 221 224689999999999975321 1111222222233456888999
Q ss_pred CCCChHHHHHHHHHH
Q psy6781 314 HPFGKGSIINLLRQF 328 (534)
Q Consensus 314 ~~~gi~~Li~~L~~~ 328 (534)
++.|+++|++.|...
T Consensus 146 ~~~~i~~l~~~l~~~ 160 (164)
T smart00173 146 ERVNVDEAFYDLVRE 160 (164)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999998888654
No 286
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.84 E-value=0.00014 Score=66.01 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=55.5
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTH 314 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~ 314 (534)
.+.++|.+++|+|+.++... ..+..++ .. ...++|+|+|+||+|+..... ...-...+.+.+....|.+|+.+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 146 (162)
T cd04123 69 YYRDADGAILVYDITDADSF--QKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKT 146 (162)
T ss_pred HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 35689999999999876432 2232332 21 223689999999999975321 11122222233334467889999
Q ss_pred CCChHHHHHHHHH
Q psy6781 315 PFGKGSIINLLRQ 327 (534)
Q Consensus 315 ~~gi~~Li~~L~~ 327 (534)
+.|++++.+.|.+
T Consensus 147 ~~gi~~~~~~l~~ 159 (162)
T cd04123 147 GKGIEELFLSLAK 159 (162)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999988864
No 287
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.83 E-value=2.7e-05 Score=72.85 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=38.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
+|+++|.+|||||||+|.|.+.......+..|.+.. .+..-...+.++||||-.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~~ 54 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGGA 54 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE-EEEECCEEEEEEECCCcH
Confidence 478999999999999999998744445555565533 122224478899999953
No 288
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.83 E-value=3.3e-05 Score=71.33 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=36.9
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+|+|.+.... ....|..+... ..+... -.+.++||||..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 68999999999999999999976532 23334333222 222222 257899999954
No 289
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.83 E-value=3.9e-05 Score=71.08 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=36.0
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCC--CceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVP--GETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~p--gtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+|+|.+..... ...| |++.....+... -.+.++||||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 579999999999999999999866422 1122 221111122222 358899999965
No 290
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.83 E-value=4.9e-05 Score=72.41 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=38.1
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-CccEEEEeCCCcc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-MRRIYLIDCPGVV 393 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi~ 393 (534)
++.++|+++|.+|||||||++.+.........+..|.... .+.. .-.+.|+||||..
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYKNLKFTMWDVGGQD 72 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEECCEEEEEEECCCCH
Confidence 3568999999999999999999975443333222232211 1222 3468999999974
No 291
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.82 E-value=9e-05 Score=69.21 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=57.9
Q ss_pred hhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCC
Q psy6781 241 IDSSDVVVYVLDVRDPMGTRCAHIENF---LRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFG 317 (534)
Q Consensus 241 I~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~g 317 (534)
+..+|++|+|+|+.++.+.. .+..+ +.....+.|+|+|.||+||...... .....+.+......|.+|++++.|
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~ 146 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVTYK--NVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK-AKQITFHRKKNLQYYEISAKSNYN 146 (166)
T ss_pred hcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCcEEEEEEchhcccccCC-HHHHHHHHHcCCEEEEEeCCCCCC
Confidence 45899999999998775432 23333 3333347999999999999743221 112223333344578889999999
Q ss_pred hHHHHHHHHHHh
Q psy6781 318 KGSIINLLRQFS 329 (534)
Q Consensus 318 i~~Li~~L~~~~ 329 (534)
++.+.+.|...+
T Consensus 147 v~~~f~~l~~~~ 158 (166)
T cd00877 147 FEKPFLWLARKL 158 (166)
T ss_pred hHHHHHHHHHHH
Confidence 999998887543
No 292
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.82 E-value=0.00014 Score=78.78 Aligned_cols=103 Identities=17% Similarity=0.072 Sum_probs=62.2
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH--HHhhCCCCcEEEEE
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF--LRREKPHKHLFFIL 281 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~--L~~~~~~k~~IlVL 281 (534)
+..+..+.|+||. ..++..+...+..+|++|+|+|+.++.+........+ +.......++|+|+
T Consensus 83 ~~~~i~iiDtpGh--------------~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVvi 148 (426)
T TIGR00483 83 DKYEVTIVDCPGH--------------RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAI 148 (426)
T ss_pred CCeEEEEEECCCH--------------HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEE
Confidence 3446678999993 2345556666789999999999998743222222121 22222235788899
Q ss_pred eCCCCCC--hhhH----HHHHHHHhcc-C---CeEEeeeccCCCCChHH
Q psy6781 282 NKVDLVP--IWVT----QRWVAILSKE-Y---PTIAFHASMTHPFGKGS 320 (534)
Q Consensus 282 NKiDLv~--~~~~----~~wl~~l~~~-~---p~v~f~~Sa~~~~gi~~ 320 (534)
||+||++ .... ..+.+.+... + ...++.+|++++.|+.+
T Consensus 149 NK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred EChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 9999974 2211 2222223221 1 13467889999988864
No 293
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.81 E-value=8.3e-05 Score=70.27 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=56.8
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhh-HH------------HHHHHHhccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWV-TQ------------RWVAILSKEYP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~-~~------------~wl~~l~~~~p 304 (534)
.+.++|++|+|.|..++.+..+. .+...+....++.|+|+|.||+||.+... .. .-...+.+.+.
T Consensus 69 ~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 148 (174)
T cd01871 69 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 148 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 46699999999999987554321 12233333345789999999999964321 11 11111222333
Q ss_pred -eEEeeeccCCCCChHHHHHHHHH
Q psy6781 305 -TIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 305 -~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
...|.+||+++.|++++.+.|.+
T Consensus 149 ~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 149 AVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CcEEEEecccccCCHHHHHHHHHH
Confidence 35678899999999999887753
No 294
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.81 E-value=2.6e-05 Score=73.15 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=35.3
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEe---CccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~---~~~i~liDtPGi~ 393 (534)
.+|+++|.||||||||+|+|.+... .....| ++.. ...+.. .-.+.|+||||..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYP-TIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccccCc-chhhhEEEEEEECCEEEEEEEEECCChH
Confidence 4799999999999999999997653 222222 2211 111122 2357899999964
No 295
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.81 E-value=0.00015 Score=66.75 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=57.3
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---hhC-CCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---REK-PHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~~~-~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
..+.++|.+|+|+|+.++.+. ..+.+++. ... .+.|+++|.||+||..... .......+........+.+|+.
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL 148 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 456789999999999876543 33444443 222 2589999999999975321 1222222323234456788999
Q ss_pred CCCChHHHHHHHHH
Q psy6781 314 HPFGKGSIINLLRQ 327 (534)
Q Consensus 314 ~~~gi~~Li~~L~~ 327 (534)
++.|++.|++.|.+
T Consensus 149 ~~~~v~~l~~~l~~ 162 (165)
T cd01868 149 DGTNVEEAFKQLLT 162 (165)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999888754
No 296
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.81 E-value=4e-05 Score=71.03 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=35.4
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCC--CceeeeEEEEe---CccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVP--GETKVWQYITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~p--gtTk~~~~~~~---~~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||||++++.... ....| +.+. ...+.. ...+.++||||..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 60 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTY-RQVISCSKNICTLQITDTTGSH 60 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCcchheE-EEEEEECCEEEEEEEEECCCCC
Confidence 67999999999999999999976532 11122 1111 112222 2357899999974
No 297
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.81 E-value=0.00014 Score=66.64 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=57.8
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---h-hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---R-EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~-~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
..+.++|.+|+|+|+.++.... .+..++. . ..++.|+++|.||+|+.+... ...-...+...+....+.+|++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFE--ALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSAL 145 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECC
Confidence 4567999999999998765432 3334432 1 236889999999999975321 1111222222333557888999
Q ss_pred CCCChHHHHHHHHH
Q psy6781 314 HPFGKGSIINLLRQ 327 (534)
Q Consensus 314 ~~~gi~~Li~~L~~ 327 (534)
++.|++++++.+.+
T Consensus 146 ~~~~i~~~~~~~~~ 159 (161)
T cd04113 146 TGENVEEAFLKCAR 159 (161)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999998887753
No 298
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.80 E-value=6.1e-05 Score=69.20 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=56.2
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh--hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR--EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~--~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
.+.++|.+++|.|..++.+.. .+..+ +.. ...++|+++|.||+||.+... .......+.+.+....|.+|++
T Consensus 69 ~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (163)
T cd04176 69 YIKNGQGFIVVYSLVNQQTFQ--DIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAK 146 (163)
T ss_pred HHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCC
Confidence 356899999999998765432 22222 222 125799999999999975322 1122233333333456788999
Q ss_pred CCCChHHHHHHHHH
Q psy6781 314 HPFGKGSIINLLRQ 327 (534)
Q Consensus 314 ~~~gi~~Li~~L~~ 327 (534)
++.|+.+++..|..
T Consensus 147 ~~~~v~~l~~~l~~ 160 (163)
T cd04176 147 SKTMVNELFAEIVR 160 (163)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999998887753
No 299
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.80 E-value=0.00041 Score=67.66 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=76.2
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHH-HHHh---hhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGEL-YKVI---DSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFIL 281 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el-~kvI---~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVL 281 (534)
+...++|-||.--.. +.. -.+.-|..+ ...+ ++...+++|+|+|.|+...+..+.+|+.. .+.|+++|+
T Consensus 70 ~~~~lVDlPGYGyAk---v~k--~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~ 142 (200)
T COG0218 70 DELRLVDLPGYGYAK---VPK--EVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVL 142 (200)
T ss_pred CcEEEEeCCCccccc---CCH--HHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEE
Confidence 336688999853211 111 122223222 2222 35678999999999998888888888875 689999999
Q ss_pred eCCCCCChhhHHHHHHHHh----ccCCeE--EeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPIWVTQRWVAILS----KEYPTI--AFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~----~~~p~v--~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+|-++.....+.+.... ...+.. ++..|+..+.|+++|...|.+++.
T Consensus 143 tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 143 TKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 9999998654433333332 223321 444566778899999998887654
No 300
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.79 E-value=0.00018 Score=65.20 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=57.2
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHhhC--CCCcEEEEEeCCCCCChh-hHHHHHHHHhccCCeEEeeeccCC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRREK--PHKHLFFILNKVDLVPIW-VTQRWVAILSKEYPTIAFHASMTH 314 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~~~--~~k~~IlVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~ 314 (534)
..+..+|++++|+|..++..... ..+...+.... ...|+++|+||+|+.+.. ........+...+....+.+|+++
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 145 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKD 145 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCC
Confidence 45678999999999987643211 11112222211 479999999999998632 222333333333334467889999
Q ss_pred CCChHHHHHHHHH
Q psy6781 315 PFGKGSIINLLRQ 327 (534)
Q Consensus 315 ~~gi~~Li~~L~~ 327 (534)
+.|+..+++.|..
T Consensus 146 ~~~i~~l~~~l~~ 158 (160)
T cd00876 146 NINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999888864
No 301
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.79 E-value=3.6e-05 Score=70.45 Aligned_cols=54 Identities=31% Similarity=0.295 Sum_probs=34.9
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC-----ccEEEEeCCCc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM-----RRIYLIDCPGV 392 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~-----~~i~liDtPGi 392 (534)
++|+++|.+|||||||+|+|++..... ...|..+... ..+.+. -.+.|+||||.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 478999999999999999999754321 1122222221 112222 25889999995
No 302
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.79 E-value=2.3e-05 Score=70.58 Aligned_cols=45 Identities=29% Similarity=0.448 Sum_probs=31.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
+|+++|.||||||||+|+|.+.... .+ .|....+ . ..++||||..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~~~~~---~--~~~iDt~G~~ 46 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQAVEY---N--DGAIDTPGEY 46 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cceeEEE---c--CeeecCchhh
Confidence 6899999999999999999987541 11 1222222 1 2689999973
No 303
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.79 E-value=4.1e-05 Score=71.19 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=35.9
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeC---ccEEEEeCCCccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~---~~i~liDtPGi~~ 394 (534)
++|+++|.||||||||+|++.+..... ....++.. ...+..+ ..+.++||||...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE--SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ 61 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEeCCCccc
Confidence 579999999999999999998765321 12222221 1122233 2568999999653
No 304
>KOG1547|consensus
Probab=97.78 E-value=3.4e-05 Score=76.78 Aligned_cols=80 Identities=24% Similarity=0.406 Sum_probs=52.6
Q ss_pred CCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeC-------CCCCceeeeEEEE------e
Q psy6781 314 HPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTA-------PVPGETKVWQYIT------L 380 (534)
Q Consensus 314 ~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~-------~~pgtTk~~~~~~------~ 380 (534)
.-.|++.+++.++.-+- ...-.++|++||.+|.|||||+|+|...++..-+ ++|-||--....+ .
T Consensus 25 gyvGidtI~~Qm~~k~m--k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 25 GYVGIDTIIEQMRKKTM--KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ccccHHHHHHHHHHHHH--hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecce
Confidence 34588988888764221 1124689999999999999999999976544322 3444443221111 1
Q ss_pred CccEEEEeCCCcccC
Q psy6781 381 MRRIYLIDCPGVVYD 395 (534)
Q Consensus 381 ~~~i~liDtPGi~~p 395 (534)
.-++.+|||||+...
T Consensus 103 klkltviDTPGfGDq 117 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQ 117 (336)
T ss_pred EEEEEEecCCCcccc
Confidence 126889999999754
No 305
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.78 E-value=9.7e-05 Score=68.22 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=35.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCccc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~~ 394 (534)
+|+++|.+|||||||+++++.... ++..+.++.. ...+.++. .+.++||||...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 378999999999999999986442 2233333311 11222332 477999999874
No 306
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.78 E-value=8.1e-05 Score=70.39 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=58.0
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhhH-------------HHHHHHHhccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWVT-------------QRWVAILSKEYP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~~-------------~~wl~~l~~~~p 304 (534)
.+.++|++|+|.|..++.+..+. .+...+....++.|+|||.||+||.+.... ......+.+.+.
T Consensus 69 ~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~ 148 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148 (175)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence 45689999999999887554321 122233333457899999999999654211 112222333333
Q ss_pred -eEEeeeccCCCCChHHHHHHHHH
Q psy6781 305 -TIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 305 -~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
...|.+||+++.|++++++.+..
T Consensus 149 ~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 149 AVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHH
Confidence 45788999999999998877754
No 307
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.78 E-value=2.6e-05 Score=75.99 Aligned_cols=53 Identities=25% Similarity=0.339 Sum_probs=35.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-----CccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-----MRRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-----~~~i~liDtPGi~ 393 (534)
+|.++|.+|||||||++.|.......+ .+.++........ ...+.|+||||..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCH
Confidence 588999999999999999998653222 1222211111111 3568999999965
No 308
>KOG1191|consensus
Probab=97.78 E-value=7.9e-05 Score=80.65 Aligned_cols=114 Identities=22% Similarity=0.261 Sum_probs=78.7
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCC----------CCcE
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKP----------HKHL 277 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~----------~k~~ 277 (534)
..+.||+|+++...+ +.....++++++.+..+|+|++|+||-.-+++.+..+.+.+..+.. .++.
T Consensus 318 v~L~DTAGiRe~~~~-----~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~ 392 (531)
T KOG1191|consen 318 VRLSDTAGIREESND-----GIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRI 392 (531)
T ss_pred EEEEeccccccccCC-----hhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccce
Confidence 457899999984332 4567788999999999999999999977677777677777754321 2788
Q ss_pred EEEEeCCCCCChhhHHHH--HHHHhc----cCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 278 FFILNKVDLVPIWVTQRW--VAILSK----EYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 278 IlVLNKiDLv~~~~~~~w--l~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|++.||+|++++-....| +.+... .++.+. .+|+.++.|...|.+.|.+
T Consensus 393 i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~-~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 393 ILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVV-EVSCTTKEGCERLSTALLN 447 (531)
T ss_pred EEEechhhccCccccccCCceeccccccCcccceEE-EeeechhhhHHHHHHHHHH
Confidence 999999999876211122 222222 233322 2567777888887776654
No 309
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.78 E-value=4.6e-05 Score=70.20 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=36.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee-eEEEEe---CccEEEEeCCCccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV-WQYITL---MRRIYLIDCPGVVY 394 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~-~~~~~~---~~~i~liDtPGi~~ 394 (534)
++|+++|.+|||||||+|+|++... .....|..... ...... .-.+.++||||...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 4789999999999999999998764 12222221111 111111 12588999999763
No 310
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.77 E-value=0.00027 Score=81.29 Aligned_cols=108 Identities=10% Similarity=0.139 Sum_probs=68.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....|.||||.. .+ .......+..+|++|+|+||.+..........+++. ..++|+|+|+||+|
T Consensus 295 ~kItfiDTPGhe-----~F---------~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k--~~~iPiIVViNKiD 358 (742)
T CHL00189 295 QKIVFLDTPGHE-----AF---------SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQ--AANVPIIVAINKID 358 (742)
T ss_pred eEEEEEECCcHH-----HH---------HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHH--hcCceEEEEEECCC
Confidence 456788999931 11 112234667899999999998754432222233333 35799999999999
Q ss_pred CCChh--hHHHHHHHH---hccC--CeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 286 LVPIW--VTQRWVAIL---SKEY--PTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 286 Lv~~~--~~~~wl~~l---~~~~--p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+.... ....++..+ ...+ ...++.+||.++.|++.|++.|..+.
T Consensus 359 l~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 359 KANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 97532 222232221 1111 23467889999999999998887654
No 311
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.77 E-value=2.9e-05 Score=72.19 Aligned_cols=54 Identities=24% Similarity=0.236 Sum_probs=35.8
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCc----eeeeEEEEeCccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGE----TKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgt----Tk~~~~~~~~~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+|+|....... ..|.+ |....+....-.+.++||||..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPEITIPADVTPERVPTTIVDTSSRP 58 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence 378999999999999999999865422 23332 2211111112367899999975
No 312
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.77 E-value=2.3e-05 Score=86.15 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.0
Q ss_pred cccceEEEEEecCCCchhHHHHhhhCC
Q psy6781 334 ERKQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 334 ~~~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.+..++|+++|.+|+|||||+++|+..
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~ 50 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHD 50 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHh
Confidence 457899999999999999999999853
No 313
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.77 E-value=4.8e-05 Score=72.68 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=72.7
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccc--
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGV-- 410 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gv-- 410 (534)
++|+++|.+|||||||++.|.+.........|.++.. ...+..+. .+.|+||||-.... ......+.++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~ad~ 76 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR----SVTHAYYRDAHA 76 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH----HhhHHHccCCCE
Confidence 3689999999999999999987653211112222112 12233332 68899999953211 1111222211
Q ss_pred -cccccCCCch------hhHHHHHHhh--ccceeeehcCCCCCCC---HHHHHHHHHHHhCCc-c----ccCcchHHHHH
Q psy6781 411 -VRVENIDDPV------QYIDAVLERI--KKVHLVKTYGIDEWED---TEDFLKKLAFKWGKI-K----KKGEPVITASA 473 (534)
Q Consensus 411 -v~v~~i~~~~------~~i~~iL~r~--~k~~l~~~ykId~~~d---~~efLe~la~k~g~l-~----kgG~pD~~~aA 473 (534)
+=+-.+.++. .++..+.... ..+.+.+.||+|.... ..+-...++...+.. . +.| -++..+.
T Consensus 77 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~-~~v~~l~ 155 (191)
T cd04112 77 LLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTG-LNVELAF 155 (191)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCC-CCHHHHH
Confidence 1111112221 1222232222 3467788899986421 123355666655421 1 122 3566677
Q ss_pred HHHHHHHHcCC
Q psy6781 474 KMVLNDWQRGK 484 (534)
Q Consensus 474 ~~vL~d~~~Gk 484 (534)
..+.+.+..+.
T Consensus 156 ~~l~~~~~~~~ 166 (191)
T cd04112 156 TAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHhc
Confidence 77777776654
No 314
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.77 E-value=0.00013 Score=84.62 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=75.1
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.|+||+.+-... .....+..++.+ .+.....+|+|+.|+|+.+. .++..+...+.+ .++|+|+|+||+
T Consensus 49 ~~~i~lvDtPG~ysl~~~-~~~~s~~E~i~~-~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e--~giPvIvVlNK~ 122 (772)
T PRK09554 49 DHQVTLVDLPGTYSLTTI-SSQTSLDEQIAC-HYILSGDADLLINVVDASNL--ERNLYLTLQLLE--LGIPCIVALNML 122 (772)
T ss_pred ceEEEEEECCCccccccc-cccccHHHHHHH-HHHhccCCCEEEEEecCCcc--hhhHHHHHHHHH--cCCCEEEEEEch
Confidence 345678999997543210 000012333322 23345689999999999864 333344344433 579999999999
Q ss_pred CCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 285 DLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+..........+.+++.....++.+|+.++.|+++|.+.+.+..
T Consensus 123 Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 123 DIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred hhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 997543333334455554444456788999999999999988654
No 315
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.76 E-value=0.00014 Score=69.96 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=56.1
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh--hCCCCcEEEEEeCCCCCCh-hh--HHHHHHHHhccCCeEEeeec
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR--EKPHKHLFFILNKVDLVPI-WV--TQRWVAILSKEYPTIAFHAS 311 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~--~~~~k~~IlVLNKiDLv~~-~~--~~~wl~~l~~~~p~v~f~~S 311 (534)
.+..+|++|+|+|+.++.... .+..+ +.. ...++|+|+|+||+|+.+. .. .....+.....+....+.+|
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~S 144 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFE--EVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETS 144 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEec
Confidence 567999999999998764432 22222 211 1247999999999999763 21 11111222112223456789
Q ss_pred cCCCCChHHHHHHHHHHh
Q psy6781 312 MTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 312 a~~~~gi~~Li~~L~~~~ 329 (534)
+.++.|+..|++.|.+.+
T Consensus 145 a~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 145 AKDNENVLEVFKELLRQA 162 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999998887543
No 316
>PLN03126 Elongation factor Tu; Provisional
Probab=97.76 E-value=1.9e-05 Score=86.82 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=61.5
Q ss_pred cccceEEEEEecCCCchhHHHHhhhCCCce---------------eeCCCCCceeeeEEEE---eCccEEEEeCCCcccC
Q psy6781 334 ERKQISVGFIGYPNVGKSSIINALRNKKVC---------------KTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYD 395 (534)
Q Consensus 334 ~~~~~~v~vvG~pnvGKSSliN~L~~~~~~---------------~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p 395 (534)
.+..++|+++|.+++|||||+++|+..... .-....|.|.+..... -+..+.|+||||...-
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 457899999999999999999999953211 1122356665533222 2457999999996421
Q ss_pred CCCCcchHHHHHcc------cccc-ccCCCchhhHHHHHHhhccc-eeeehcCCCCCC
Q psy6781 396 MTNVETDTEKVLRG------VVRV-ENIDDPVQYIDAVLERIKKV-HLVKTYGIDEWE 445 (534)
Q Consensus 396 ~~~~~~~~e~vL~g------vv~v-~~i~~~~~~i~~iL~r~~k~-~l~~~ykId~~~ 445 (534)
- ......+.. ++.+ +.+.........++.....+ .+..+||+|...
T Consensus 158 ~----~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 V----KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred H----HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 1 111111111 1111 12222222233445556665 567899999764
No 317
>PLN03126 Elongation factor Tu; Provisional
Probab=97.76 E-value=0.00028 Score=77.69 Aligned_cols=74 Identities=16% Similarity=0.055 Sum_probs=51.2
Q ss_pred ccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCc-EEE
Q psy6781 201 YKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKH-LFF 279 (534)
Q Consensus 201 ~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~-~Il 279 (534)
|..+..+..+.|+||.+ .+..++...+..+|++++|+||.............++.. .++| +|+
T Consensus 139 ~~~~~~~i~liDtPGh~--------------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIv 202 (478)
T PLN03126 139 YETENRHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVV 202 (478)
T ss_pred EecCCcEEEEEECCCHH--------------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEE
Confidence 33345577889999942 244566777889999999999997654433333333332 4677 678
Q ss_pred EEeCCCCCChh
Q psy6781 280 ILNKVDLVPIW 290 (534)
Q Consensus 280 VLNKiDLv~~~ 290 (534)
++||+|+++.+
T Consensus 203 vvNK~Dl~~~~ 213 (478)
T PLN03126 203 FLNKQDQVDDE 213 (478)
T ss_pred EEecccccCHH
Confidence 99999998743
No 318
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.75 E-value=2.8e-05 Score=72.66 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=36.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeeeEEEEeC---ccEEEEeCCCccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVWQYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~ 394 (534)
++|+++|.+|||||||+|++..... ....+..|.......+... -.+.++||||...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChh
Confidence 3789999999999999999985432 2222333322222112222 2578999999753
No 319
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.75 E-value=0.00013 Score=67.11 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=55.9
Q ss_pred HhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh--hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccCCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR--EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHP 315 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~--~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~ 315 (534)
.+.++|.+++|+|..++.+..+ ..+...+.. ...+.|+|+|.||+||.+... .......+.+.+....+.+||+++
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (164)
T cd04175 69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAK 148 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCC
Confidence 4568999999999876644321 111122221 235789999999999975321 111122333333344678899999
Q ss_pred CChHHHHHHHHH
Q psy6781 316 FGKGSIINLLRQ 327 (534)
Q Consensus 316 ~gi~~Li~~L~~ 327 (534)
.|+++++..|.+
T Consensus 149 ~~v~~~~~~l~~ 160 (164)
T cd04175 149 INVNEIFYDLVR 160 (164)
T ss_pred CCHHHHHHHHHH
Confidence 999999888764
No 320
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.75 E-value=7.1e-05 Score=86.64 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=67.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e-CccEEEEeCCCcccCCCCCcchHHHHHcc---
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L-MRRIYLIDCPGVVYDMTNVETDTEKVLRG--- 409 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~-~~~i~liDtPGi~~p~~~~~~~~e~vL~g--- 409 (534)
....|+|+|.+|+|||||+++|++..+. .+..+|.|.+...+. + +..+.|+||||...-. ......+..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~----~m~~rga~~aDi 363 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT----AMRARGAQVTDI 363 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch----hHHHhhhhhCCE
Confidence 5678999999999999999999986653 445677776643322 2 4579999999964211 111111111
Q ss_pred ---cccc-ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHH
Q psy6781 410 ---VVRV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLA 455 (534)
Q Consensus 410 ---vv~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la 455 (534)
++.. +.+..........+.....+.+...||+|... +.+.+...+.
T Consensus 364 aILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~ 414 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELS 414 (787)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHH
Confidence 1111 11111111122334445567888999999753 4445544443
No 321
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.75 E-value=5.4e-05 Score=69.19 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=35.5
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~ 393 (534)
++|+++|.||||||||+|++...... ...+.++... ..+..+. .+.|+||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 57999999999999999999975432 2222333221 1222332 46789999964
No 322
>PLN03118 Rab family protein; Provisional
Probab=97.75 E-value=0.00019 Score=69.71 Aligned_cols=107 Identities=13% Similarity=0.022 Sum_probs=67.1
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHH----HHHh--hCCCCcEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIEN----FLRR--EKPHKHLFFI 280 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~----~L~~--~~~~k~~IlV 280 (534)
+..+.||||.... ..++ ...+.++|++|+|+|+.++.... .+.. .+.. .....+.|+|
T Consensus 63 ~l~l~Dt~G~~~~-----------~~~~---~~~~~~~d~~vlv~D~~~~~sf~--~~~~~~~~~~~~~~~~~~~~~ilv 126 (211)
T PLN03118 63 KLTIWDTAGQERF-----------RTLT---SSYYRNAQGIILVYDVTRRETFT--NLSDVWGKEVELYSTNQDCVKMLV 126 (211)
T ss_pred EEEEEECCCchhh-----------HHHH---HHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4567899995311 1122 23467899999999998764432 2222 2221 1235789999
Q ss_pred EeCCCCCChhhH-HHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 281 LNKVDLVPIWVT-QRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 281 LNKiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
.||+||...... ......+........|.+|++++.|++++++.|...+
T Consensus 127 ~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 127 GNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred EECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999753221 2222223333344567889999999999998887654
No 323
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.74 E-value=3.5e-05 Score=69.81 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=36.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeC---ccEEEEeCCCccc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~---~~i~liDtPGi~~ 394 (534)
+|+++|.+|||||||+|+|++.. ..+..+.++.+.. ....+ -.+.++||||...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence 47899999999999999999765 2333333433321 12222 3578999999754
No 324
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.74 E-value=0.00017 Score=67.47 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=64.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|++|.. ..+.+|. ..+.++|++|+|+|+.++..... ..+..++.. ...++|++||+||
T Consensus 44 ~~~i~D~~G~~-----------~~~~~~~---~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK 109 (167)
T cd04161 44 EVCIFDLGGGA-----------NFRGIWV---NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANK 109 (167)
T ss_pred EEEEEECCCcH-----------HHHHHHH---HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeC
Confidence 45578999942 1123343 45679999999999988743211 112222221 1247899999999
Q ss_pred CCCCChhhHHHHHHHHh-----c--cCCeEEeeeccCCC------CChHHHHHHHH
Q psy6781 284 VDLVPIWVTQRWVAILS-----K--EYPTIAFHASMTHP------FGKGSIINLLR 326 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~-----~--~~p~v~f~~Sa~~~------~gi~~Li~~L~ 326 (534)
+||..........+.+. + ..+..++.+||.++ .|+.+-+++|.
T Consensus 110 ~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 110 QDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 99975433333333321 1 12445677899887 67877777764
No 325
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.74 E-value=5.1e-05 Score=81.37 Aligned_cols=59 Identities=22% Similarity=0.404 Sum_probs=42.4
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCC------Cceee---------CCCCCceeeeEEEEe---CccEEEEeCCCcc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNK------KVCKT---------APVPGETKVWQYITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~------~~~~v---------~~~pgtTk~~~~~~~---~~~i~liDtPGi~ 393 (534)
++.++|+++|.+++|||||+++|++. ..... ....|+|.+...+.. ...+.|+||||..
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 56899999999999999999999842 11111 113688877554444 3468999999974
No 326
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.74 E-value=5.6e-05 Score=71.79 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=37.0
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+|+|.+..... ..+..|.+.....+..+. .+.++||||..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 478999999999999999999765422 222333322222233332 46799999964
No 327
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.73 E-value=3.7e-05 Score=87.03 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=59.5
Q ss_pred EEEEEecCCCchhHHHHhhhCCCce--eeCCCCCceeeeEEEEe----CccEEEEeCCCcccCC---CCCcchHHHHHcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVC--KTAPVPGETKVWQYITL----MRRIYLIDCPGVVYDM---TNVETDTEKVLRG 409 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~--~v~~~pgtTk~~~~~~~----~~~i~liDtPGi~~p~---~~~~~~~e~vL~g 409 (534)
.|+++|.+++|||||+|+|++.... ......|.|.+..+... +..+.|+||||...-. ..+....+.++.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL- 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL- 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE-
Confidence 5899999999999999999985422 22344688876544332 2357899999963110 000001111111
Q ss_pred ccccc-cCCCchhhHHHHHHhhccc-eeeehcCCCCCC
Q psy6781 410 VVRVE-NIDDPVQYIDAVLERIKKV-HLVKTYGIDEWE 445 (534)
Q Consensus 410 vv~v~-~i~~~~~~i~~iL~r~~k~-~l~~~ykId~~~ 445 (534)
++.++ .+.........++.....+ .+.+.||+|...
T Consensus 81 VVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 81 VVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD 118 (614)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC
Confidence 12211 1211122233456655545 468999999764
No 328
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.73 E-value=9.1e-05 Score=69.29 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=55.4
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhh-------------HHHHHHHHhccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWV-------------TQRWVAILSKEYP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~-------------~~~wl~~l~~~~p 304 (534)
.+.++|++|+|.|+.++.+.... .+...+....++.|+++|.||+||.+... ...-...+.+.+.
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 147 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence 45799999999999987654321 12233333335789999999999975321 0111112222222
Q ss_pred -eEEeeeccCCCCChHHHHHHH
Q psy6781 305 -TIAFHASMTHPFGKGSIINLL 325 (534)
Q Consensus 305 -~v~f~~Sa~~~~gi~~Li~~L 325 (534)
...+.+|++++.|+++|.+.+
T Consensus 148 ~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 148 ACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred CCeEEEEeCCCCCCHHHHHHHH
Confidence 356788999999999987765
No 329
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.73 E-value=0.00015 Score=68.24 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=65.7
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHH-HHHHHHh--hCCCCcEEEEEeCC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAH-IENFLRR--EKPHKHLFFILNKV 284 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~-le~~L~~--~~~~k~~IlVLNKi 284 (534)
..+.|++|... -..+|.. .+..+|.+|+|.|..++.+..... +...+.. ..++.|+|+|.||+
T Consensus 52 l~i~Dt~G~~~-----------~~~l~~~---~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~ 117 (172)
T cd04141 52 LDILDTAGQAE-----------FTAMRDQ---YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKV 117 (172)
T ss_pred EEEEeCCCchh-----------hHHHhHH---HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEECh
Confidence 44679998421 1223333 355899999999999886653311 1222332 23578999999999
Q ss_pred CCCChhhH-HHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 285 DLVPIWVT-QRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 285 DLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
||.....+ ..-...+.+......|.+||+++.|++++++.|..
T Consensus 118 Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 118 DLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred hhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99543211 11112222333445678899999999998887764
No 330
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.73 E-value=0.00023 Score=68.75 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=59.5
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---HhhCCCCcEEEEEeCCCCCCh-----hhHHHHHHHHhccCCeEEeeec
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---RREKPHKHLFFILNKVDLVPI-----WVTQRWVAILSKEYPTIAFHAS 311 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~~~~~k~~IlVLNKiDLv~~-----~~~~~wl~~l~~~~p~v~f~~S 311 (534)
.+.++|++|+|.|..++.+.. .+..++ ....++.|+|||.||+||... +....|.+ ......|.+|
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~--~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~----~~~~~~~e~S 148 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFD--GIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAE----RNGMTFFEVS 148 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHH----HcCCEEEEec
Confidence 346999999999999886653 333433 334578999999999999642 23334433 2334467889
Q ss_pred cCCCCChHHHHHHHHHHh
Q psy6781 312 MTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 312 a~~~~gi~~Li~~L~~~~ 329 (534)
|+++.|++++++.|...+
T Consensus 149 Ak~g~~V~~~F~~l~~~i 166 (189)
T cd04121 149 PLCNFNITESFTELARIV 166 (189)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999888886543
No 331
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.72 E-value=7.5e-05 Score=69.17 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=36.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCcee---eeEEEEeCc---cEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK---VWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk---~~~~~~~~~---~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+++|.+.... ...+.++. ....+.... .+.++||||..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 68999999999999999999976432 22222221 112223332 57899999964
No 332
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.72 E-value=0.00034 Score=78.84 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=66.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
+..+.||||... + ..++ ...+..+|++++|+|+.+..........+++.. .++|.|+|+||+|+
T Consensus 70 ~l~~iDTpG~e~-----f------~~l~---~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl 133 (590)
T TIGR00491 70 GLLFIDTPGHEA-----F------TNLR---KRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDR 133 (590)
T ss_pred cEEEEECCCcHh-----H------HHHH---HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCc
Confidence 467899999421 1 1112 224568999999999987544333333344443 47899999999999
Q ss_pred CChhhH------------------HHH-------HHHHhc-------------cC-CeEEeeeccCCCCChHHHHHHHHH
Q psy6781 287 VPIWVT------------------QRW-------VAILSK-------------EY-PTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 287 v~~~~~------------------~~w-------l~~l~~-------------~~-p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
.+.+.. ..+ +..+.+ .+ ...++++||.++.|+++|+..|..
T Consensus 134 ~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 134 IPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred cchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 864311 000 011111 01 245688999999999999988764
Q ss_pred H
Q psy6781 328 F 328 (534)
Q Consensus 328 ~ 328 (534)
+
T Consensus 214 l 214 (590)
T TIGR00491 214 L 214 (590)
T ss_pred H
Confidence 3
No 333
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.71 E-value=5.4e-05 Score=73.44 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=37.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~ 393 (534)
++|+++|.||||||||||.+.+..... ...|.++... ..+..+. .+.|+||||..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 368999999999999999999765322 2344443221 1233333 46799999975
No 334
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.71 E-value=0.00027 Score=67.09 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=58.0
Q ss_pred HHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh----hCCCCcEEEEEeCCCCCChhhH-HHHHHHHhccCCeEEeeecc
Q psy6781 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR----EKPHKHLFFILNKVDLVPIWVT-QRWVAILSKEYPTIAFHASM 312 (534)
Q Consensus 238 ~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~----~~~~k~~IlVLNKiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa 312 (534)
...+.++|.+|+|+|+.++.+. ..+..++.. .....|+|+|.||+||.+.... ......+........+.+|+
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~--~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 144 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESF--ENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSA 144 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeC
Confidence 3456799999999999876442 233344321 1235789999999999743211 11112222222234677899
Q ss_pred CCCCChHHHHHHHHHHhh
Q psy6781 313 THPFGKGSIINLLRQFSK 330 (534)
Q Consensus 313 ~~~~gi~~Li~~L~~~~~ 330 (534)
+++.|++.++..|...+.
T Consensus 145 ~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 145 KQSINVEEAFILLVKLII 162 (188)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999998888766543
No 335
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.71 E-value=8.7e-05 Score=68.36 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=56.0
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhhHHH------------HHHHHhccCC-
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWVTQR------------WVAILSKEYP- 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~------------wl~~l~~~~p- 304 (534)
.+.++|++++|+|+.++.+.... .+...+.....++|+++|.||+||.+...... -...+...+.
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 34689999999999876443211 11222333345799999999999976543211 1122222233
Q ss_pred eEEeeeccCCCCChHHHHHHHH
Q psy6781 305 TIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 305 ~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
...|.+|++++.|+++|++.|.
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHh
Confidence 2567889999999999888765
No 336
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.70 E-value=3.1e-05 Score=88.94 Aligned_cols=114 Identities=15% Similarity=0.214 Sum_probs=65.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--Ee-----CccEEEEeCCCcccCCCCCcchHHHHHc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TL-----MRRIYLIDCPGVVYDMTNVETDTEKVLR 408 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~-----~~~i~liDtPGi~~p~~~~~~~~e~vL~ 408 (534)
+...|+++|.+|+|||||+++|+.... ..+..+|.|.+...+ .+ ...+.|+||||...-. ......+.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~----~mr~rg~~ 317 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS----SMRSRGAN 317 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH----HHHHHHHH
Confidence 467899999999999999999997654 334556777553221 11 2578999999964211 11111111
Q ss_pred c------cccc-ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHH
Q psy6781 409 G------VVRV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKL 454 (534)
Q Consensus 409 g------vv~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~l 454 (534)
+ ++.+ +.+..........+.....+.+...||+|... +.+++.+.+
T Consensus 318 ~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL 371 (742)
T CHL00189 318 VTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQL 371 (742)
T ss_pred HCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHH
Confidence 1 1111 11111111122334445667888999999753 334444443
No 337
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.70 E-value=7.8e-05 Score=69.08 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=36.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||++++.+..... ...|..+... ..+... -.+.|+||||..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCc-CcCCceeeEEEEEEEEECCeEEEEEEEeCCChH
Confidence 45899999999999999999998754321 1222222111 122222 256789999954
No 338
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.70 E-value=0.00023 Score=66.01 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=55.7
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeCCCCCChhhHHHHHHHHhcc-C---CeEEeeec
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNKVDLVPIWVTQRWVAILSKE-Y---PTIAFHAS 311 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~-~---p~v~f~~S 311 (534)
..+.++|++++|+|+.++..... ..+...+.. ...++|+++|+||+|+..........+.+.-. . ...++.+|
T Consensus 77 ~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 156 (173)
T cd04155 77 NYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACS 156 (173)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeE
Confidence 35679999999999986532211 112122221 12468999999999997654334444443221 1 12356789
Q ss_pred cCCCCChHHHHHHHH
Q psy6781 312 MTHPFGKGSIINLLR 326 (534)
Q Consensus 312 a~~~~gi~~Li~~L~ 326 (534)
++++.|++++++.|.
T Consensus 157 a~~~~gi~~~~~~l~ 171 (173)
T cd04155 157 AKTGEGLQEGMNWVC 171 (173)
T ss_pred CCCCCCHHHHHHHHh
Confidence 999999999988875
No 339
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.70 E-value=7.7e-05 Score=71.94 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=73.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccc-
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGV- 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gv- 410 (534)
..++|+++|.+|||||||++.|.+.... ...+..|.......+.++. .+.|+||||-.... ......+.++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----~~~~~~~~~a~ 80 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR----TITSTYYRGTH 80 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH----HHHHHHhCCCc
Confidence 3578999999999999999999976532 1222223222111222222 57899999964222 1112222222
Q ss_pred --cccccCCCch--hhHHHHHHhhc-----cceeeehcCCCCCCC---HHHHHHHHHHHhCCc-----cccCcchHHHHH
Q psy6781 411 --VRVENIDDPV--QYIDAVLERIK-----KVHLVKTYGIDEWED---TEDFLKKLAFKWGKI-----KKKGEPVITASA 473 (534)
Q Consensus 411 --v~v~~i~~~~--~~i~~iL~r~~-----k~~l~~~ykId~~~d---~~efLe~la~k~g~l-----~kgG~pD~~~aA 473 (534)
+=+-.+.++. +.+..++..+. .+.+.+.+|+|.... ..+....++...+.. .+.| .++..+-
T Consensus 81 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~gi~~lf 159 (199)
T cd04110 81 GVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKEN-INVEEMF 159 (199)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCC-cCHHHHH
Confidence 1111122322 22222332221 345677899986532 123344455554421 0122 2666666
Q ss_pred HHHHHHHHcCC
Q psy6781 474 KMVLNDWQRGK 484 (534)
Q Consensus 474 ~~vL~d~~~Gk 484 (534)
..++..+...+
T Consensus 160 ~~l~~~~~~~~ 170 (199)
T cd04110 160 NCITELVLRAK 170 (199)
T ss_pred HHHHHHHHHhh
Confidence 77666665443
No 340
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.70 E-value=3.8e-05 Score=69.75 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=35.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~ 393 (534)
.+|+++|.+|||||||+|+|.+..... ...+.++... ..+... -.+.++||||-.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 368999999999999999999865422 2222222221 122222 257899999954
No 341
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.69 E-value=7.4e-05 Score=83.19 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=71.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhC--CCceeeCCCC-------------------CceeeeEEE---EeCccEEEEeCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRN--KKVCKTAPVP-------------------GETKVWQYI---TLMRRIYLIDCPG 391 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~--~~~~~v~~~p-------------------gtTk~~~~~---~~~~~i~liDtPG 391 (534)
...+|++||.+|+|||||+++|+- ..+...+.+. |.|...... .-+..+.|+||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 456899999999999999999863 2221111111 222221111 2245789999999
Q ss_pred cccCCCCCcchHHHHHccccc-------cccCCCchhhHHHHHHhhccceeeehcCCCCC-CCHHHHHHHHHHHhCC
Q psy6781 392 VVYDMTNVETDTEKVLRGVVR-------VENIDDPVQYIDAVLERIKKVHLVKTYGIDEW-EDTEDFLKKLAFKWGK 460 (534)
Q Consensus 392 i~~p~~~~~~~~e~vL~gvv~-------v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~-~d~~efLe~la~k~g~ 460 (534)
...-. .+....+.++.. ...+......+..++.....+.+...||+|.. .+..++++.+....|.
T Consensus 90 ~~df~----~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 90 HEDFS----EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred hhhHH----HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 84221 122333332211 11122222344455555567888999999975 3778888988887764
No 342
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.69 E-value=0.00025 Score=84.14 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=67.3
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLV 287 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv 287 (534)
..|.||||.. .+ .. .....+..+|++++|+|+.+.+..........+.. .++|+|+|+||+|++
T Consensus 528 i~fiDTPGhe-----~F-~~--------lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 528 LLFIDTPGHE-----AF-TS--------LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEECCCcH-----HH-HH--------HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCc
Confidence 6789999932 11 11 01224567999999999987655443333444443 478999999999998
Q ss_pred ChhhH--------------HHHHH-----------HHhcc-------------C-CeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 288 PIWVT--------------QRWVA-----------ILSKE-------------Y-PTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 288 ~~~~~--------------~~wl~-----------~l~~~-------------~-p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
+.|.. ..... .|.+. + ...++++||.+|.|++.|+.+|..+
T Consensus 592 ~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 592 PGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 64321 00011 11111 1 2456889999999999999888654
Q ss_pred hh
Q psy6781 329 SK 330 (534)
Q Consensus 329 ~~ 330 (534)
.+
T Consensus 672 ~~ 673 (1049)
T PRK14845 672 AQ 673 (1049)
T ss_pred hH
Confidence 43
No 343
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.69 E-value=0.00023 Score=71.63 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
....+++||..|+||||++++|.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 34578999999999999999999864
No 344
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.68 E-value=0.0003 Score=70.22 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 274 HKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 274 ~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
.+|.++|+||+|+++......| ....+ .+.+|+.++.|+++|.+.|-+.+
T Consensus 176 y~p~iiV~NK~Dl~~~~~~~~~----~~~~~--~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 176 YIPCLYVYNKIDLISIEELDLL----ARQPN--SVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EeeEEEEEECccCCCHHHHHHH----hcCCC--EEEEcCCCCCCHHHHHHHHHHHh
Confidence 3688999999999887655433 22222 46679999999999998887644
No 345
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.68 E-value=9.4e-05 Score=73.48 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~ 360 (534)
+|+++|.++.|||||+++|+..
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~ 23 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLAS 23 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
No 346
>PLN03110 Rab GTPase; Provisional
Probab=97.68 E-value=0.00028 Score=69.20 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=60.5
Q ss_pred HHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---h-hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeecc
Q psy6781 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---R-EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASM 312 (534)
Q Consensus 238 ~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~-~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa 312 (534)
...+.++|.+|+|.|+.++.+. ..+..++. . ...+.|+|+|.||+||..... .......+...+....+.+|+
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA 156 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTF--DNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSA 156 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHH--HHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 3456799999999999877543 23444432 2 124689999999999964322 122333444444455778899
Q ss_pred CCCCChHHHHHHHHHHh
Q psy6781 313 THPFGKGSIINLLRQFS 329 (534)
Q Consensus 313 ~~~~gi~~Li~~L~~~~ 329 (534)
+++.|++++++.|...+
T Consensus 157 ~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 157 LEATNVEKAFQTILLEI 173 (216)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999888876544
No 347
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.68 E-value=8.1e-05 Score=69.14 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=34.7
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~ 394 (534)
++|+++|.+|||||||+|++...... .....++... ..+..+. .+.++||||-..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 47899999999999999999876532 1111121111 1122332 367899999643
No 348
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.67 E-value=0.00027 Score=69.11 Aligned_cols=91 Identities=18% Similarity=0.137 Sum_probs=59.4
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh---h--CCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeecc
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR---E--KPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASM 312 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~---~--~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa 312 (534)
..+.++|++|+|.|..++.+.. .+.+++.. . ....++|||.||+||.+... ...-...+.+.+....+.+|+
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf~--~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 148 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESFE--HVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSA 148 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeC
Confidence 3567899999999998874432 33333321 1 12456788999999975321 122233333434455678899
Q ss_pred CCCCChHHHHHHHHHHhhh
Q psy6781 313 THPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 313 ~~~~gi~~Li~~L~~~~~~ 331 (534)
+++.|++++++.|.+.+..
T Consensus 149 k~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 149 RTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999988865543
No 349
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.67 E-value=0.00056 Score=68.47 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=50.1
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
...+..+.||||..+ +..+....+..+|.+++|+|+.+........+.+++.. .++|.++|+||
T Consensus 62 ~~~~i~liDTPG~~~--------------f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK 125 (237)
T cd04168 62 EDTKVNLIDTPGHMD--------------FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNK 125 (237)
T ss_pred CCEEEEEEeCCCccc--------------hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEEC
Confidence 345677899999642 12345567789999999999998765443445555543 47999999999
Q ss_pred CCCCC
Q psy6781 284 VDLVP 288 (534)
Q Consensus 284 iDLv~ 288 (534)
+|+..
T Consensus 126 ~D~~~ 130 (237)
T cd04168 126 IDRAG 130 (237)
T ss_pred ccccC
Confidence 99974
No 350
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.66 E-value=0.00026 Score=65.35 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=63.8
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHhh---CCCCcEEEEEeC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRRE---KPHKHLFFILNK 283 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~~---~~~k~~IlVLNK 283 (534)
.-+.|+||...... ......+..+|++|+|+|+.++.+... ..+...+... ..+.|+|+|.||
T Consensus 49 ~~i~D~~g~~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 49 LEILDTAGQQQADT-------------EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEECCCCccccc-------------chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 44789999542111 112234678999999999987744321 1122223321 347999999999
Q ss_pred CCCCChhh-HHHHHHHHhccCCeEEeeeccCCCC-ChHHHHHHHHHH
Q psy6781 284 VDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPF-GKGSIINLLRQF 328 (534)
Q Consensus 284 iDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~-gi~~Li~~L~~~ 328 (534)
+||..... .......+.+.+....|.+|+.++. |++++.+.|.+.
T Consensus 116 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 116 ADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred CchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHH
Confidence 99964321 1111222222233446788999884 899888777643
No 351
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.66 E-value=0.00046 Score=69.52 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=58.2
Q ss_pred HhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh----------hCCCCcEEEEEeCCCCCChh--hHHHHHHHHhccCCeE
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR----------EKPHKHLFFILNKVDLVPIW--VTQRWVAILSKEYPTI 306 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~----------~~~~k~~IlVLNKiDLv~~~--~~~~wl~~l~~~~p~v 306 (534)
.+.++|++|+|.|..++.+... ..+.+.+.. ...++|+|+|.||+||.... ......+.+.......
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 3568999999999987643221 111122211 12478999999999997421 1122222222222345
Q ss_pred EeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 307 AFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 307 ~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
.|.+||+++.|+++|++.|.+++..
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 6888999999999999999876543
No 352
>KOG0462|consensus
Probab=97.66 E-value=0.00022 Score=78.10 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=74.3
Q ss_pred EecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCC-
Q psy6781 210 VRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVP- 288 (534)
Q Consensus 210 ~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~- 288 (534)
++||||..+-. .|.-+++..+|-+|.||||...... .-+..+-.+...+..+|.||||+||-.
T Consensus 129 LIDTPGHvDFs--------------~EVsRslaac~G~lLvVDA~qGvqA--QT~anf~lAfe~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 129 LIDTPGHVDFS--------------GEVSRSLAACDGALLVVDASQGVQA--QTVANFYLAFEAGLAIIPVLNKIDLPSA 192 (650)
T ss_pred eecCCCccccc--------------ceehehhhhcCceEEEEEcCcCchH--HHHHHHHHHHHcCCeEEEeeeccCCCCC
Confidence 68999965432 2456688899999999999864432 344443222235789999999999953
Q ss_pred -hhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 289 -IWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 289 -~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
++.+...+..+-..-+..++.+||+.|.|.++|++++-+-.|.
T Consensus 193 dpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 193 DPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred CHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 3444444444434445678889999999999999988776553
No 353
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.66 E-value=0.00021 Score=82.74 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=67.1
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.|.||||... + . .++ ...+..+|++|+|+|+.+...........++. ..+.|+|+|+||+
T Consensus 336 ~~~ItfiDTPGhe~-----F-~-----~m~---~rga~~aDiaILVVdAddGv~~qT~e~i~~a~--~~~vPiIVviNKi 399 (787)
T PRK05306 336 GGKITFLDTPGHEA-----F-T-----AMR---ARGAQVTDIVVLVVAADDGVMPQTIEAINHAK--AAGVPIIVAINKI 399 (787)
T ss_pred CEEEEEEECCCCcc-----c-h-----hHH---HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHH--hcCCcEEEEEECc
Confidence 34567899999532 1 1 122 23467899999999998765433323333333 3579999999999
Q ss_pred CCCCh--hhHHHHHHHH---hccC--CeEEeeeccCCCCChHHHHHHHHH
Q psy6781 285 DLVPI--WVTQRWVAIL---SKEY--PTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 285 DLv~~--~~~~~wl~~l---~~~~--p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|+... ......+..+ .+.+ ...+|.+|+.++.|++.|++.|..
T Consensus 400 Dl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 400 DKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred cccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 99642 2222222211 1111 134678899999999999988864
No 354
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.66 E-value=0.00033 Score=69.08 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=58.4
Q ss_pred hcCEEEEEEeCCCCCCCCc-HHHHHHHHhh--CCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCCh
Q psy6781 243 SSDVVVYVLDVRDPMGTRC-AHIENFLRRE--KPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGK 318 (534)
Q Consensus 243 nsDvVL~VvDAR~Pl~s~~-~~le~~L~~~--~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi 318 (534)
++|++|+|+|+.++.+... ..+...+... ..++|+|+|.||+||.+... .......+...+....+.+|+.++.|+
T Consensus 72 ~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv 151 (221)
T cd04148 72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNV 151 (221)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 8999999999998754321 1222223322 24789999999999975432 111122233333334577899999999
Q ss_pred HHHHHHHHHHhhhh
Q psy6781 319 GSIINLLRQFSKLH 332 (534)
Q Consensus 319 ~~Li~~L~~~~~~~ 332 (534)
++|++.|.+.+...
T Consensus 152 ~~l~~~l~~~~~~~ 165 (221)
T cd04148 152 DELLEGIVRQIRLR 165 (221)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999888766543
No 355
>KOG1486|consensus
Probab=97.66 E-value=3.6e-05 Score=77.11 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=45.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee---EEEEeCccEEEEeCCCcccCCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW---QYITLMRRIYLIDCPGVVYDMTN 398 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~---~~~~~~~~i~liDtPGi~~p~~~ 398 (534)
+.-+|++||+|.||||||+..|+.... ..+.+..||-.. .....+..|.++|.|||+.....
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsq 125 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQ 125 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCccccccccc
Confidence 567899999999999999999997653 344444555332 12233568999999999987643
No 356
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.65 E-value=0.00011 Score=69.03 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=54.7
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh--hCCCCcEEEEEeCCCCCChhhH-HHHHHHHhccCC-eEEeeeccCCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFLRR--EKPHKHLFFILNKVDLVPIWVT-QRWVAILSKEYP-TIAFHASMTHP 315 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~--~~~~k~~IlVLNKiDLv~~~~~-~~wl~~l~~~~p-~v~f~~Sa~~~ 315 (534)
.+.++|++|+|+|+.+|... ..+..++.. ...++|+++|+||+||.+.... ..-.+.+.+.+. ...+.+|+.++
T Consensus 74 ~~~~~d~~llv~d~~~~~s~--~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSF--SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG 151 (169)
T ss_pred hhhcCCEEEEEEeCCCHHHH--HHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence 35799999999999877332 223333332 1246899999999999754211 001122222222 12367799999
Q ss_pred CChHHHHHHHHHH
Q psy6781 316 FGKGSIINLLRQF 328 (534)
Q Consensus 316 ~gi~~Li~~L~~~ 328 (534)
.|+++|++.|.+.
T Consensus 152 ~~v~~lf~~l~~~ 164 (169)
T cd01892 152 DSSNELFTKLATA 164 (169)
T ss_pred ccHHHHHHHHHHH
Confidence 9999988888754
No 357
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.65 E-value=8.7e-05 Score=68.82 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=35.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-CccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-MRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+++|....... ..|.+......+.. .-.+.|+||||..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~--~~pt~g~~~~~~~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYKNISFTVWDVGGQD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc--cCCCCCcceEEEEECCEEEEEEECCCCH
Confidence 478999999999999999996543322 22322111111222 3468999999974
No 358
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.65 E-value=9.1e-05 Score=67.99 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=34.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCcee-e--eEEEEeC----ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK-V--WQYITLM----RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk-~--~~~~~~~----~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+++|......-......++. + ...+... -.+.++||||..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH
Confidence 478999999999999999998642111112211221 1 1112221 368899999964
No 359
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.65 E-value=7.4e-05 Score=69.83 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=34.9
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEe-CccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITL-MRRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~-~~~i~liDtPGi~ 393 (534)
+|+++|.+|||||||+|+|.+.... . +..|..... +.. .-.+.++||||..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKH 54 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCceeEEEEEECCEEEEEEECCCCh
Confidence 4789999999999999999986432 1 223332222 222 3468999999975
No 360
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.65 E-value=2.9e-05 Score=75.83 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~ 360 (534)
+|+++|.+|+|||||+++|+..
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~ 23 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQ 23 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999864
No 361
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.65 E-value=0.00023 Score=66.15 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=55.1
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhhHHH-----------H--HHHHhccC-
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWVTQR-----------W--VAILSKEY- 303 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~-----------w--l~~l~~~~- 303 (534)
.+.++|++++|.|+.++.+..+. .+...+.....++|+++|.||+||.+.+.... | ...+.+.+
T Consensus 69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 148 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG 148 (175)
T ss_pred ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC
Confidence 35789999999999876432211 11122232335799999999999976432111 1 01111112
Q ss_pred CeEEeeeccCCCCChHHHHHHHHH
Q psy6781 304 PTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 304 p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
....+.+||+.+.|+++|+..|.+
T Consensus 149 ~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 149 AFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred CcEEEEeccccCcCHHHHHHHHHH
Confidence 234678899999999999888864
No 362
>PTZ00369 Ras-like protein; Provisional
Probab=97.65 E-value=0.00031 Score=67.03 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=37.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeCc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||++++.+.... ...+..|.+... .+.++. .+.++||||...
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~ 65 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRK-QCVIDEETCLLDILDTAGQEE 65 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEE-EEEECCEEEEEEEEeCCCCcc
Confidence 3578999999999999999999975432 122222222211 122222 467899999653
No 363
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.64 E-value=0.00013 Score=68.11 Aligned_cols=105 Identities=17% Similarity=0.254 Sum_probs=61.8
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhhCCCCcEEEEEeC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~~~~k~~IlVLNK 283 (534)
....+.|++|... -+.+|. ..+.++|.+|+|+|+.++..... ..+.+++. ..+++|+++|.||
T Consensus 44 ~~l~i~Dt~G~~~-----------~~~~~~---~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~-~~~~~piilv~NK 108 (164)
T cd04162 44 AIMELLEIGGSQN-----------LRKYWK---RYLSGSQGLIFVVDSADSERLPLARQELHQLLQ-HPPDLPLVVLANK 108 (164)
T ss_pred eEEEEEECCCCcc-----------hhHHHH---HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHh-CCCCCcEEEEEeC
Confidence 3456779998421 122333 35779999999999988753211 11222322 2368999999999
Q ss_pred CCCCChhhHHHHH-----HHHhccCCeEEeeeccCC------CCChHHHHHHH
Q psy6781 284 VDLVPIWVTQRWV-----AILSKEYPTIAFHASMTH------PFGKGSIINLL 325 (534)
Q Consensus 284 iDLv~~~~~~~wl-----~~l~~~~p~v~f~~Sa~~------~~gi~~Li~~L 325 (534)
+||.......... ..+.+......|.+|+.. ++|+.++.+.|
T Consensus 109 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~ 161 (164)
T cd04162 109 QDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQL 161 (164)
T ss_pred cCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHH
Confidence 9996543322222 223233334456666655 77777766655
No 364
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.64 E-value=0.00048 Score=63.77 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=53.2
Q ss_pred HhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh----hCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCC-eEEeeecc
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR----EKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYP-TIAFHASM 312 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~----~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p-~v~f~~Sa 312 (534)
.+..+|++|+|.|..++.+... ..+..++.. ...+.|+|+|.||+||........-...+.+.+. ...|.+|+
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 153 (170)
T cd04116 74 FYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSA 153 (170)
T ss_pred HhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEEC
Confidence 4568999999999887643321 111122221 1246799999999999643211111222222222 34678899
Q ss_pred CCCCChHHHHHHHH
Q psy6781 313 THPFGKGSIINLLR 326 (534)
Q Consensus 313 ~~~~gi~~Li~~L~ 326 (534)
+++.|+.++++.+.
T Consensus 154 ~~~~~v~~~~~~~~ 167 (170)
T cd04116 154 KDATNVAAAFEEAV 167 (170)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999998887765
No 365
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.64 E-value=0.00017 Score=70.39 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=45.6
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||..+ +.......+..+|++|+|+|+..........+.+.+.. .++|.++|+||+|
T Consensus 71 ~~i~iiDtpG~~~--------------f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D 134 (213)
T cd04167 71 YLFNIIDTPGHVN--------------FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKID 134 (213)
T ss_pred EEEEEEECCCCcc--------------hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 3466889999542 12345567789999999999987654433333333322 4689999999999
Q ss_pred CC
Q psy6781 286 LV 287 (534)
Q Consensus 286 Lv 287 (534)
++
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 86
No 366
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.64 E-value=0.00028 Score=79.48 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=66.7
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||... +. .++ ...+..+|++|+|+|+.+..........+++. ..+.|+|+++||+|+
T Consensus 136 ~i~~iDTPGhe~-----F~------~~r---~rga~~aDiaILVVda~dgv~~qT~e~i~~~~--~~~vPiIVviNKiDl 199 (587)
T TIGR00487 136 MITFLDTPGHEA-----FT------SMR---ARGAKVTDIVVLVVAADDGVMPQTIEAISHAK--AANVPIIVAINKIDK 199 (587)
T ss_pred EEEEEECCCCcc-----hh------hHH---HhhhccCCEEEEEEECCCCCCHhHHHHHHHHH--HcCCCEEEEEECccc
Confidence 677899999421 10 112 23467899999999998765433222223333 257899999999999
Q ss_pred CC--hhhHHHHHHHHh---ccC--CeEEeeeccCCCCChHHHHHHHHH
Q psy6781 287 VP--IWVTQRWVAILS---KEY--PTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 287 v~--~~~~~~wl~~l~---~~~--p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
.. ......++..+. ..+ ...+|.+||+++.|++.|++.|..
T Consensus 200 ~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 200 PEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred ccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 54 223333332211 111 134688999999999999888753
No 367
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.64 E-value=0.00011 Score=68.51 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=35.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
.++|+++|.+||||||||++++..... ...+..|.......+.++ -.+.++||||..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence 468999999999999999999875421 111111211111122222 268899999964
No 368
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.63 E-value=7.3e-05 Score=71.38 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=34.2
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~ 393 (534)
+|+++|.+|||||||+|+|+..... ...+.++.. ...+.++. .+.|+||||..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 3789999999999999999865432 222333221 11222332 47889999964
No 369
>PRK10218 GTP-binding protein; Provisional
Probab=97.63 E-value=0.0007 Score=76.62 Aligned_cols=112 Identities=17% Similarity=0.129 Sum_probs=72.9
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||..+ +..++...+..+|.+|+|+|+.+........+.+.+.. .++|.|+|+||+
T Consensus 67 ~~~inliDTPG~~d--------------f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKi 130 (607)
T PRK10218 67 DYRINIVDTPGHAD--------------FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKV 130 (607)
T ss_pred CEEEEEEECCCcch--------------hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECc
Confidence 34566789999532 12234557789999999999987544444444444332 578999999999
Q ss_pred CCCCh---hhHHHHHHHHhcc------CCeEEeeeccCCCC----------ChHHHHHHHHHHhhhh
Q psy6781 285 DLVPI---WVTQRWVAILSKE------YPTIAFHASMTHPF----------GKGSIINLLRQFSKLH 332 (534)
Q Consensus 285 DLv~~---~~~~~wl~~l~~~------~p~v~f~~Sa~~~~----------gi~~Li~~L~~~~~~~ 332 (534)
|+... +......+.|... ....++.+|+.++. |+..|++.+..+++..
T Consensus 131 D~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 131 DRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 98632 3344444444320 11225677888887 5778888888777644
No 370
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.63 E-value=7.9e-05 Score=76.59 Aligned_cols=59 Identities=22% Similarity=0.427 Sum_probs=35.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeC-CCC-------Cceee-eEEEEe-----CccEEEEeCCCcccC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTA-PVP-------GETKV-WQYITL-----MRRIYLIDCPGVVYD 395 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~-~~p-------gtTk~-~~~~~~-----~~~i~liDtPGi~~p 395 (534)
.++|+++|.+|+|||||||+|++....... ..+ .++.. .....+ .-.+.++||||+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~ 76 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN 76 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc
Confidence 578999999999999999999997654432 111 11111 111111 126889999998643
No 371
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.62 E-value=0.0001 Score=67.85 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=35.7
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+|+++.... ....+.++.+. ..+.+. ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence 5799999999999999999986532 22233333321 122232 246789999975
No 372
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.62 E-value=0.00032 Score=67.30 Aligned_cols=89 Identities=12% Similarity=0.075 Sum_probs=57.5
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHH--HHHHHHhhCCCCcEEEEEeCCCCCChhh-------------HHHHHHHHhccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAH--IENFLRREKPHKHLFFILNKVDLVPIWV-------------TQRWVAILSKEYP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~--le~~L~~~~~~k~~IlVLNKiDLv~~~~-------------~~~wl~~l~~~~p 304 (534)
.+.++|++|+|.|..++.+..+.. +...+....++.|+|||.||+||..... .....+.+.+...
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 150 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 356899999999998876543211 1122332346799999999999964321 0111222323232
Q ss_pred -eEEeeeccCCCCChHHHHHHHHHH
Q psy6781 305 -TIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 305 -~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
...|.+||+.+.|++++++.|.+.
T Consensus 151 ~~~~~e~SAk~g~~v~e~f~~l~~~ 175 (191)
T cd01875 151 AVKYLECSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 356788999999999988888654
No 373
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.62 E-value=0.00012 Score=67.33 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=34.8
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~ 393 (534)
++|+++|.||||||||++.+....... ..+.++... ..+.++. .+.|+||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 579999999999999999998754322 112222111 1222222 47789999963
No 374
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.61 E-value=3.7e-05 Score=86.52 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=56.1
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC-ceeeeE--EEEeC-------------------ccEEEEeCCCccc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG-ETKVWQ--YITLM-------------------RRIYLIDCPGVVY 394 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg-tTk~~~--~~~~~-------------------~~i~liDtPGi~~ 394 (534)
...|+++|.+|+|||||||+|++.... ...|| +|.+.- ++..+ .++.|+||||...
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 346899999999999999999987542 23344 444311 11110 2488999999532
Q ss_pred CCCCCcchHHHHHcc------ccccc-cCCCchhhHHHHHHhhccceeeehcCCCCC
Q psy6781 395 DMTNVETDTEKVLRG------VVRVE-NIDDPVQYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 395 p~~~~~~~~e~vL~g------vv~v~-~i~~~~~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
-. ......... ++... .+.........++.....+.+...||+|..
T Consensus 82 f~----~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 82 FT----NLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred HH----HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 11 011111111 11111 111112222334555567788899999864
No 375
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.61 E-value=0.00034 Score=68.22 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=57.4
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENF---LRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPF 316 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~ 316 (534)
.+.++|++|+|.|+.++.+.. .+..+ +.....+.|+|||.||+||........-+. +........|.+||+++.
T Consensus 64 ~~~~ad~~ilV~D~t~~~S~~--~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~-~~~~~~~~~~e~SAk~~~ 140 (200)
T smart00176 64 YYIQGQCAIIMFDVTARVTYK--NVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSIT-FHRKKNLQYYDISAKSNY 140 (200)
T ss_pred HhcCCCEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHH-HHHHcCCEEEEEeCCCCC
Confidence 566999999999998765432 23333 333346789999999999964321111121 222334456788999999
Q ss_pred ChHHHHHHHHHH
Q psy6781 317 GKGSIINLLRQF 328 (534)
Q Consensus 317 gi~~Li~~L~~~ 328 (534)
|+.++.+.|...
T Consensus 141 ~v~~~F~~l~~~ 152 (200)
T smart00176 141 NFEKPFLWLARK 152 (200)
T ss_pred CHHHHHHHHHHH
Confidence 999998888653
No 376
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.61 E-value=0.00028 Score=69.90 Aligned_cols=87 Identities=14% Similarity=0.202 Sum_probs=56.3
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH----HhhCCCCcEEEEEeCCCCCC------------------------hhh
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL----RREKPHKHLFFILNKVDLVP------------------------IWV 291 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L----~~~~~~k~~IlVLNKiDLv~------------------------~~~ 291 (534)
.+.++|++|+|+|+.++.+.. .+..++ .....+.|+|||.||+||.. .+.
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~--~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLE--ELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 366999999999999875543 232222 21234689999999999975 122
Q ss_pred HHHHHHHHhcc----------CCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 292 TQRWVAILSKE----------YPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 292 ~~~wl~~l~~~----------~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
...|.+.+... .....|.+||+++.|+++++..+.+.
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~ 188 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL 188 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence 33444333210 01245778999999999988777643
No 377
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.61 E-value=0.00038 Score=69.65 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=56.4
Q ss_pred HhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhhCCCCcEEEEEeCCCCCCh-------------hhHHHHHHHHhccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRC--AHIENFLRREKPHKHLFFILNKVDLVPI-------------WVTQRWVAILSKEYP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~~~~k~~IlVLNKiDLv~~-------------~~~~~wl~~l~~~~p 304 (534)
.+.++|++|+|.|..++.+..+ ..+...+....++.|+|||.||+||... .....-.+.|.+.+.
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 4679999999999998766532 1122334333467899999999999531 111112223333333
Q ss_pred e-EEeeeccCCCC-ChHHHHHHHHH
Q psy6781 305 T-IAFHASMTHPF-GKGSIINLLRQ 327 (534)
Q Consensus 305 ~-v~f~~Sa~~~~-gi~~Li~~L~~ 327 (534)
. ..|.+||+++. |++++...+..
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~ 185 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASL 185 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHH
Confidence 3 35778999997 79888776654
No 378
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.61 E-value=0.00043 Score=67.60 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=57.6
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhh-CCCCcEEEEEeCCCCCChhhH-HHHHHHHhccC-CeEEeeecc
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRRE-KPHKHLFFILNKVDLVPIWVT-QRWVAILSKEY-PTIAFHASM 312 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~-~~~k~~IlVLNKiDLv~~~~~-~~wl~~l~~~~-p~v~f~~Sa 312 (534)
..+.++|.+|+|.|..++.+.. .+..+ +... ..+.|+|+|.||+||.+...+ ..-...+.+.. ....|.+||
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~--~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA 145 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFD--DLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA 145 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence 3466999999999999876543 23333 3222 346899999999999653321 12222232222 234678899
Q ss_pred CCCCChHHHHHHHHHH
Q psy6781 313 THPFGKGSIINLLRQF 328 (534)
Q Consensus 313 ~~~~gi~~Li~~L~~~ 328 (534)
+++.|++++.+.|...
T Consensus 146 ktg~gV~e~F~~l~~~ 161 (202)
T cd04120 146 KDNFNVDEIFLKLVDD 161 (202)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999988777643
No 379
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00055 Score=74.99 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=69.2
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
..+.|.||||.. -|.+ +-.| =.+-+|++++|+|+.+-.-..-.+-.+++++ .+.|+|+.+||+|
T Consensus 55 ~~itFiDTPGHe------AFt~-mRaR-------Ga~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiD 118 (509)
T COG0532 55 PGITFIDTPGHE------AFTA-MRAR-------GASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKID 118 (509)
T ss_pred ceEEEEcCCcHH------HHHH-HHhc-------CCccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEeccc
Confidence 468899999931 1221 1111 1256899999999998766543333344554 7899999999999
Q ss_pred CCChhhHHHHHHHHh-----ccC--CeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 286 LVPIWVTQRWVAILS-----KEY--PTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~-----~~~--p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
..+.....-..+..+ +.| .+.++++||++++|+++|+..+.-+
T Consensus 119 k~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 119 KPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred CCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 975432111111111 112 2567889999999999998887644
No 380
>PTZ00369 Ras-like protein; Provisional
Probab=97.60 E-value=0.00017 Score=68.78 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=55.4
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh--hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR--EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~--~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
.+..+|++|+|+|+.++.+.. .+..+ +.. ...+.|+|+|.||+||.+... .......+.+.+....|.+|++
T Consensus 73 ~~~~~d~iilv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak 150 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRSSFE--EIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAK 150 (189)
T ss_pred HhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCC
Confidence 456899999999998775421 22222 221 234789999999999964321 1111222222233346888999
Q ss_pred CCCChHHHHHHHHHH
Q psy6781 314 HPFGKGSIINLLRQF 328 (534)
Q Consensus 314 ~~~gi~~Li~~L~~~ 328 (534)
++.|++.+++.|.+.
T Consensus 151 ~~~gi~~~~~~l~~~ 165 (189)
T PTZ00369 151 QRVNVDEAFYELVRE 165 (189)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999988877644
No 381
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.59 E-value=0.00026 Score=78.85 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=70.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhC--CCceeeCCCC-------------------CceeeeE---EEEeCccEEEEeCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRN--KKVCKTAPVP-------------------GETKVWQ---YITLMRRIYLIDCPG 391 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~--~~~~~v~~~p-------------------gtTk~~~---~~~~~~~i~liDtPG 391 (534)
...+|+++|.+|+|||||+++|+- ..+...+.+. |.|-... +..-+..+.|+||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 356899999999999999999963 2111122111 2221111 222245799999999
Q ss_pred cccCCCCCcchHHHHHccccc-------cccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 392 VVYDMTNVETDTEKVLRGVVR-------VENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 392 i~~p~~~~~~~~e~vL~gvv~-------v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
...-. .+....+..+.. .+.+......+..++.....+.+...||+|... +..++++.+....|.
T Consensus 89 ~~df~----~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 89 HEDFS----EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred chhhH----HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 75322 122333332211 112222223344455556678889999999754 677888888777663
No 382
>PLN03110 Rab GTPase; Provisional
Probab=97.59 E-value=0.00013 Score=71.56 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=73.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHcccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGVV 411 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gvv 411 (534)
..++|+++|.+||||||||++|.+..... ..+..|.......+.++. .+.|+||||-.... ......++++.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~----~~~~~~~~~~~ 86 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR----AITSAYYRGAV 86 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHH----HHHHHHhCCCC
Confidence 35789999999999999999999865421 122223222222333333 67899999964221 12233333332
Q ss_pred cc---ccCCCch--hhHHHHHHh---h---ccceeeehcCCCCCC---CHHHHHHHHHHHhCCcc----ccCcchHHHHH
Q psy6781 412 RV---ENIDDPV--QYIDAVLER---I---KKVHLVKTYGIDEWE---DTEDFLKKLAFKWGKIK----KKGEPVITASA 473 (534)
Q Consensus 412 ~v---~~i~~~~--~~i~~iL~r---~---~k~~l~~~ykId~~~---d~~efLe~la~k~g~l~----kgG~pD~~~aA 473 (534)
.+ ..+.++. +.+..++.. . ..+.+.+.+|+|... -.++....++...+.-. ....-++..+.
T Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 87 GALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166 (216)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 11 1122221 122222221 1 245677889998642 22345667776554311 11113455555
Q ss_pred HHHHHHHHc
Q psy6781 474 KMVLNDWQR 482 (534)
Q Consensus 474 ~~vL~d~~~ 482 (534)
..+++....
T Consensus 167 ~~l~~~i~~ 175 (216)
T PLN03110 167 QTILLEIYH 175 (216)
T ss_pred HHHHHHHHH
Confidence 555555433
No 383
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.59 E-value=0.00029 Score=68.27 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=55.6
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCCh--------------------hhHHHHHH
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPI--------------------WVTQRWVA 297 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~--------------------~~~~~wl~ 297 (534)
.+.++|++|+|.|..++.+..+. .+...+....++.|+|+|.||+||... .....-.+
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~ 163 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR 163 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence 46799999999999887654321 122223333457899999999999631 11111122
Q ss_pred HHhccCCeEEeeeccCCCCChHHHHHHHH
Q psy6781 298 ILSKEYPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 298 ~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
.+.+.+....|.+||+++.|++++.+.+.
T Consensus 164 ~~a~~~~~~~~E~SAkt~~~V~e~F~~~~ 192 (195)
T cd01873 164 AVAKELGIPYYETSVVTQFGVKDVFDNAI 192 (195)
T ss_pred HHHHHhCCEEEEcCCCCCCCHHHHHHHHH
Confidence 23232333457789999999998877665
No 384
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.58 E-value=0.00045 Score=64.79 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=62.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee-e--EEEEeCc---cEEEEeCCCcccCCCCCc---chHHHH
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV-W--QYITLMR---RIYLIDCPGVVYDMTNVE---TDTEKV 406 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~-~--~~~~~~~---~i~liDtPGi~~p~~~~~---~~~e~v 406 (534)
+.++|+++|.+|||||||++++++.... +.....|+.. . ..+.++. .+.++||+|-........ ..++.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 5789999999999999999999986532 1233333321 1 2233332 467889998643220000 011111
Q ss_pred HccccccccCCCch--hhHHHHHHhh----ccceeeehcCCCCCCCHH---HHHHHHHHHhC
Q psy6781 407 LRGVVRVENIDDPV--QYIDAVLERI----KKVHLVKTYGIDEWEDTE---DFLKKLAFKWG 459 (534)
Q Consensus 407 L~gvv~v~~i~~~~--~~i~~iL~r~----~k~~l~~~ykId~~~d~~---efLe~la~k~g 459 (534)
+. ++. +.++. +.+..++... ..+.+.+.||+|...... +-.+.+++..|
T Consensus 82 ll-v~d---~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 139 (169)
T cd01892 82 CL-VYD---SSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG 139 (169)
T ss_pred EE-EEe---CCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcC
Confidence 11 111 22332 2233444333 457788999998643221 12345565555
No 385
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.58 E-value=0.00029 Score=69.35 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=56.9
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---HhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---RREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPF 316 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~ 316 (534)
...++|.+|+|+|..++.+.. .+..++ .....+.|+|||.||+||........-+ .+........|.+||+++.
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~--~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~ 158 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNY 158 (219)
T ss_pred HcccccEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCC
Confidence 356899999999998775442 333333 3334679999999999996432211112 2223333446788999999
Q ss_pred ChHHHHHHHHH
Q psy6781 317 GKGSIINLLRQ 327 (534)
Q Consensus 317 gi~~Li~~L~~ 327 (534)
|++++++.|..
T Consensus 159 ~i~~~f~~l~~ 169 (219)
T PLN03071 159 NFEKPFLYLAR 169 (219)
T ss_pred CHHHHHHHHHH
Confidence 99998877764
No 386
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.58 E-value=0.00012 Score=70.43 Aligned_cols=141 Identities=20% Similarity=0.161 Sum_probs=73.4
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC----ccEEEEeCCCcccCCCCCcchHHHHHccccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM----RRIYLIDCPGVVYDMTNVETDTEKVLRGVVR 412 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~----~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~ 412 (534)
++|+++|.+|||||||+|+|.+..... ..+..|.......+..+ -.+.|+||||..... ......+.++..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~----~~~~~~~~~a~~ 76 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG----GMTRVYYRGAVG 76 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh----hhHHHHhCCCCE
Confidence 478999999999999999999754311 11111211112223333 257899999963221 112333333221
Q ss_pred ---cccCCCch--hh----HHHHHHh------hccceeeehcCCCCCC---CHHHHHHHHHHHhCCc------cccCcch
Q psy6781 413 ---VENIDDPV--QY----IDAVLER------IKKVHLVKTYGIDEWE---DTEDFLKKLAFKWGKI------KKKGEPV 468 (534)
Q Consensus 413 ---v~~i~~~~--~~----i~~iL~r------~~k~~l~~~ykId~~~---d~~efLe~la~k~g~l------~kgG~pD 468 (534)
+-.+.++. +. ...+... ...+.+.+.+|+|... -..+-+..+++..+.. .+.| -+
T Consensus 77 ~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~-~~ 155 (201)
T cd04107 77 AIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEG-IN 155 (201)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCC-CC
Confidence 12223332 11 1222211 2346688889999642 2233456777776631 1222 35
Q ss_pred HHHHHHHHHHHHHcC
Q psy6781 469 ITASAKMVLNDWQRG 483 (534)
Q Consensus 469 ~~~aA~~vL~d~~~G 483 (534)
+..+-..+++.....
T Consensus 156 v~e~f~~l~~~l~~~ 170 (201)
T cd04107 156 IEEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666666543
No 387
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.57 E-value=0.00015 Score=67.78 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
.++|+++|.+|||||||+|+|.+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999999999998754
No 388
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.56 E-value=0.00017 Score=66.58 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=35.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeC---ccEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~---~~i~liDtPGi~ 393 (534)
-.+|+++|.+|||||||+++|....... ...+..+.... .+... ..+.++||||..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4789999999999999999998654311 11122222211 12222 247789999964
No 389
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.55 E-value=0.00095 Score=74.45 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=48.5
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
..+..+.||||.. .+..+++..+..+|.+|+|+|+..........+.+.+.. .++|+|+++||+
T Consensus 79 ~~~inliDTPG~~--------------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNKi 142 (527)
T TIGR00503 79 DCLVNLLDTPGHE--------------DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNKL 142 (527)
T ss_pred CeEEEEEECCChh--------------hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECc
Confidence 4567789999942 233567778899999999999987544333344444332 578999999999
Q ss_pred CCC
Q psy6781 285 DLV 287 (534)
Q Consensus 285 DLv 287 (534)
|+.
T Consensus 143 D~~ 145 (527)
T TIGR00503 143 DRD 145 (527)
T ss_pred ccc
Confidence 995
No 390
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.55 E-value=0.00014 Score=68.72 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=34.8
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee-EEEEeC----ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW-QYITLM----RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~-~~~~~~----~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+|+|.+.... ....|.+..+. ..+... -.+.++||||..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch
Confidence 47899999999999999999976532 11122211111 112222 157899999953
No 391
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.54 E-value=0.0003 Score=74.03 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=62.7
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
...-.++.||+|+..... .++..+|++++|++. |.+. .+...... --...-|+|+||
T Consensus 147 ~g~d~viieT~Gv~qs~~-----------------~i~~~aD~vlvv~~p--~~gd---~iq~~k~g-i~E~aDIiVVNK 203 (332)
T PRK09435 147 AGYDVILVETVGVGQSET-----------------AVAGMVDFFLLLQLP--GAGD---ELQGIKKG-IMELADLIVINK 203 (332)
T ss_pred cCCCEEEEECCCCccchh-----------------HHHHhCCEEEEEecC--CchH---HHHHHHhh-hhhhhheEEeeh
Confidence 345578999999863221 146689999999762 2222 22111110 011223899999
Q ss_pred CCCCChhhHHHHHHHHhcc----------CCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 284 VDLVPIWVTQRWVAILSKE----------YPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~~----------~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+|+.+..........+... +...++.+|+.++.|+++|.+.|.++.+
T Consensus 204 aDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 204 ADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9998754333333322211 1123566789999999999999987654
No 392
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.53 E-value=0.00024 Score=62.25 Aligned_cols=72 Identities=24% Similarity=0.390 Sum_probs=51.1
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
......+.||||+.+..... .....+.++.+.+..+|++++|+|+..+.......+.++|+ .++|+++|+||
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~-----~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQD-----NDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHH-----HHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred ceeeEEEEeCCCCcccchhh-----HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 34455799999987654311 11135667778889999999999998754433445555563 57999999998
No 393
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.53 E-value=0.00026 Score=67.48 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=37.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-CccEEEEeCCCc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-MRRIYLIDCPGV 392 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi 392 (534)
..++|.++|.+|||||||++.|.........+..|.+. ..+.. .-.+.|+||||-
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~--~~~~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeE--EEEEECCEEEEEEECCCC
Confidence 46899999999999999999998644333333333322 11222 346899999995
No 394
>PRK12739 elongation factor G; Reviewed
Probab=97.52 E-value=0.00056 Score=78.62 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=54.1
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
...+..+.||||.++ +..++...+..+|++|+|+||..........+..++.. .++|.|+++||
T Consensus 71 ~~~~i~liDTPG~~~--------------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK 134 (691)
T PRK12739 71 KGHRINIIDTPGHVD--------------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNK 134 (691)
T ss_pred CCEEEEEEcCCCHHH--------------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEEC
Confidence 456788999999532 22367888999999999999998776555556565543 57999999999
Q ss_pred CCCCCh
Q psy6781 284 VDLVPI 289 (534)
Q Consensus 284 iDLv~~ 289 (534)
+|+.+.
T Consensus 135 ~D~~~~ 140 (691)
T PRK12739 135 MDRIGA 140 (691)
T ss_pred CCCCCC
Confidence 999864
No 395
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.52 E-value=0.00017 Score=62.95 Aligned_cols=56 Identities=20% Similarity=0.165 Sum_probs=36.2
Q ss_pred EEEEEecCCCchhHHHHhhhCCCce---eeCCCCCceeeeEEEEeC---ccEEEEeCCCccc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVC---KTAPVPGETKVWQYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~---~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~ 394 (534)
+|.++|.+||||||||++|++.... ......+.+......... ..+.++|++|-..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 62 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE 62 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccce
Confidence 5899999999999999999987654 122333444433333322 2478899999753
No 396
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.52 E-value=0.00016 Score=69.54 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=35.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCccc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~~ 394 (534)
+|+++|.+|||||||+++|++.... ..++.++... ..+.+. -.+.|+||||...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 59 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchh
Confidence 4789999999999999999986532 2222222211 112222 2578999999653
No 397
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.52 E-value=0.00018 Score=67.93 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=36.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-CccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-MRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||++.|....... ..|.+......+.. .-.+.|+||||..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~l~l~D~~G~~ 68 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT--TIPTIGFNVETVTYKNISFTVWDVGGQD 68 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC--cCCccccceEEEEECCEEEEEEECCCCh
Confidence 46899999999999999999996443322 23322222211222 3468899999964
No 398
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.51 E-value=0.001 Score=75.04 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=64.8
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLV 287 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv 287 (534)
..+.||||... + . ......+..+|++++|+|+.+...........++.. .+.|+|+++||+|+.
T Consensus 73 i~~iDTPG~e~-----f-~--------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEA-----F-T--------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHH-----H-H--------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCc
Confidence 56899999521 1 1 111235578999999999987543332233344443 578999999999997
Q ss_pred ChhhH------------------H-------HHHHHHhc-c-------------CCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 288 PIWVT------------------Q-------RWVAILSK-E-------------YPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 288 ~~~~~------------------~-------~wl~~l~~-~-------------~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+.|.. . ....+|.. . ....++.+|+.++.|+++|++.+..
T Consensus 137 ~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 137 PGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 53320 0 01112221 1 1134678899999999998877754
No 399
>PLN03108 Rab family protein; Provisional
Probab=97.51 E-value=0.00064 Score=66.32 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=55.0
Q ss_pred HHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH----hhCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccC
Q psy6781 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFLR----REKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 239 kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~----~~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
..+.++|.+|+|+|+.++.... .+.+++. ....+.|+|+|.||+||..... .....+.+.+.+....|.+|++
T Consensus 74 ~~~~~ad~~vlv~D~~~~~s~~--~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 151 (210)
T PLN03108 74 SYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 151 (210)
T ss_pred HHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 4556899999999998765432 3333322 1235789999999999975321 1122222333333456788999
Q ss_pred CCCChHHHHHHHH
Q psy6781 314 HPFGKGSIINLLR 326 (534)
Q Consensus 314 ~~~gi~~Li~~L~ 326 (534)
++.|++++++.+.
T Consensus 152 ~~~~v~e~f~~l~ 164 (210)
T PLN03108 152 TAQNVEEAFIKTA 164 (210)
T ss_pred CCCCHHHHHHHHH
Confidence 9999998665554
No 400
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.50 E-value=0.0002 Score=66.42 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=35.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||++.+.+..... ...|....+ ...+... -.+.++||||..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 368999999999999999998765321 112222211 1122232 257899999954
No 401
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.49 E-value=0.0014 Score=71.77 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=67.2
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC----CcHHHHHHHH-hhCCCCc-E
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT----RCAHIENFLR-REKPHKH-L 277 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s----~~~~le~~L~-~~~~~k~-~ 277 (534)
......+.|+||. .++..++...+..+|++|+|+||...... ......+++. ....+++ +
T Consensus 83 ~~~~i~lIDtPGh--------------~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~i 148 (446)
T PTZ00141 83 PKYYFTIIDAPGH--------------RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQM 148 (446)
T ss_pred CCeEEEEEECCCh--------------HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeE
Confidence 3456678999993 23466777888999999999999876421 0112222221 1224665 5
Q ss_pred EEEEeCCCC--CC--hhhH----HHHHHHHhc-cC---CeEEeeeccCCCCChH------------HHHHHHHHH
Q psy6781 278 FFILNKVDL--VP--IWVT----QRWVAILSK-EY---PTIAFHASMTHPFGKG------------SIINLLRQF 328 (534)
Q Consensus 278 IlVLNKiDL--v~--~~~~----~~wl~~l~~-~~---p~v~f~~Sa~~~~gi~------------~Li~~L~~~ 328 (534)
|+++||+|+ ++ .... ....+.|.. .+ ...++++|+.++.|+. .|++.|..+
T Consensus 149 iv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~ 223 (446)
T PTZ00141 149 IVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL 223 (446)
T ss_pred EEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence 789999994 32 1222 222223322 12 1346788999988874 477777654
No 402
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.49 E-value=9.1e-05 Score=64.56 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=33.8
Q ss_pred EEecCCCchhHHHHhhhCCCceeeCCCCCcee-ee--EEEE---eCccEEEEeCCCcccCC
Q psy6781 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETK-VW--QYIT---LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 342 vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk-~~--~~~~---~~~~i~liDtPGi~~p~ 396 (534)
++|.+|+|||||+|+|.+....... ...|. .. .... ....+.++||||.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 59 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE--YETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR 59 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc--cccchhheeeEEEEECCEEEEEEEEecCChHHHH
Confidence 5899999999999999987652111 11221 11 1111 13478999999976433
No 403
>KOG1489|consensus
Probab=97.49 E-value=0.00067 Score=70.22 Aligned_cols=112 Identities=19% Similarity=0.248 Sum_probs=71.1
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HH---HHHH---HhhCCCCcE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HI---ENFL---RREKPHKHL 277 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~l---e~~L---~~~~~~k~~ 277 (534)
.|+-+-|-||+..-.. +.+|+. -+..+-|+.++++++|+|...+.. +++ .+ ..-| .+.-..+|.
T Consensus 244 ~q~tVADiPGiI~GAh---~nkGlG----~~FLrHiER~~~l~fVvD~s~~~~-~~p~~~~~lL~~ELe~yek~L~~rp~ 315 (366)
T KOG1489|consen 244 SQITVADIPGIIEGAH---MNKGLG----YKFLRHIERCKGLLFVVDLSGKQL-RNPWQQLQLLIEELELYEKGLADRPA 315 (366)
T ss_pred ceeEeccCcccccccc---ccCccc----HHHHHHHHhhceEEEEEECCCccc-CCHHHHHHHHHHHHHHHhhhhccCce
Confidence 3455678899865433 223333 345567889999999999986622 211 11 1111 112357899
Q ss_pred EEEEeCCCCCChhhHHHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHH
Q psy6781 278 FFILNKVDLVPIWVTQRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 278 IlVLNKiDLv~~~~~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+||+||+|+.+.+ +..+..|.+... ..+|.+||+.++|...|++.|++
T Consensus 316 liVaNKiD~~eae--~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 316 LIVANKIDLPEAE--KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EEEEeccCchhHH--HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 9999999995322 223344433333 24788899999999999999885
No 404
>PTZ00416 elongation factor 2; Provisional
Probab=97.49 E-value=0.00012 Score=85.67 Aligned_cols=120 Identities=16% Similarity=0.096 Sum_probs=69.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCcee---------------ee---EEEEe----------CccEEEE
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK---------------VW---QYITL----------MRRIYLI 387 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk---------------~~---~~~~~----------~~~i~li 387 (534)
.-.+|+++|.+++|||||+++|+....+......|.|+ .. .+... +..+.|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34589999999999999999998643322223334333 11 11111 2358999
Q ss_pred eCCCcccCCCCCcchHHHHHccc-------cccccCCCchhhHHHHHHhhccceeeehcCCCCC------------CCHH
Q psy6781 388 DCPGVVYDMTNVETDTEKVLRGV-------VRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEW------------EDTE 448 (534)
Q Consensus 388 DtPGi~~p~~~~~~~~e~vL~gv-------v~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~------------~d~~ 448 (534)
||||...-. .+...++..+ ...+.+......+...+.....+.+..+||+|.. .+..
T Consensus 98 DtPG~~~f~----~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~ 173 (836)
T PTZ00416 98 DSPGHVDFS----SEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFV 173 (836)
T ss_pred cCCCHHhHH----HHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHH
Confidence 999986422 1223333322 1223333334444555555556778899999976 3445
Q ss_pred HHHHHHHHHhC
Q psy6781 449 DFLKKLAFKWG 459 (534)
Q Consensus 449 efLe~la~k~g 459 (534)
.+++.+....+
T Consensus 174 ~ii~~in~~l~ 184 (836)
T PTZ00416 174 KTIENVNVIIA 184 (836)
T ss_pred HHHHHHHHHHH
Confidence 56666665443
No 405
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.49 E-value=6.1e-05 Score=74.09 Aligned_cols=55 Identities=24% Similarity=0.170 Sum_probs=37.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCc------------------------------eeeCCCCCceeeeEEEE---eCccEE
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKV------------------------------CKTAPVPGETKVWQYIT---LMRRIY 385 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~------------------------------~~v~~~pgtTk~~~~~~---~~~~i~ 385 (534)
+|+++|.+++|||||+.+|+.... .......|+|.+..... .+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 479999999999999999963200 00111357777654333 356899
Q ss_pred EEeCCCcc
Q psy6781 386 LIDCPGVV 393 (534)
Q Consensus 386 liDtPGi~ 393 (534)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999974
No 406
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.49 E-value=0.00016 Score=67.09 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=34.1
Q ss_pred EEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee-EEEEeCc---cEEEEeCCCccc
Q psy6781 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW-QYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 340 v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~-~~~~~~~---~i~liDtPGi~~ 394 (534)
|+++|.+|||||||+|++.+... .....|...... ..+.++. .+.++||||...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcc
Confidence 57999999999999999998653 222222221111 1122222 478999999653
No 407
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.48 E-value=0.001 Score=74.11 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=48.0
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||..+ +..+.+..+..+|.+|+|+|+.+........+.++.. ..++|+|+++||+
T Consensus 78 ~~~inliDTPG~~d--------------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~--~~~iPiiv~iNK~ 141 (526)
T PRK00741 78 DCLINLLDTPGHED--------------FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCR--LRDTPIFTFINKL 141 (526)
T ss_pred CEEEEEEECCCchh--------------hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHH--hcCCCEEEEEECC
Confidence 45567889999521 2245667788999999999998765433333434333 3589999999999
Q ss_pred CCCC
Q psy6781 285 DLVP 288 (534)
Q Consensus 285 DLv~ 288 (534)
|+..
T Consensus 142 D~~~ 145 (526)
T PRK00741 142 DRDG 145 (526)
T ss_pred cccc
Confidence 9864
No 408
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.48 E-value=0.0002 Score=70.54 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=35.3
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCce--eeCCCCCceeeeEEEEe---CccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVC--KTAPVPGETKVWQYITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~--~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+++++..... ...+..+.......+.+ ...+.++||||..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 36899999999999999999754432 11111111111112222 2468899999986
No 409
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.48 E-value=0.00035 Score=66.64 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=58.7
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---HhhCCCCcEEEEEeCCCCCChh-----------hHHHHHHHHhccCCe
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---RREKPHKHLFFILNKVDLVPIW-----------VTQRWVAILSKEYPT 305 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~~~~~k~~IlVLNKiDLv~~~-----------~~~~wl~~l~~~~p~ 305 (534)
.+.++|.+|+|.|..++.+..+. ...|+ ....++.|+|||.||+||.+.. ....-...+.+.+..
T Consensus 69 ~~~~a~~~ilvyd~~~~~Sf~~~-~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENV-LKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred hcCCCcEEEEEEEcCCHHHHHHH-HHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 45699999999999988765431 12333 3334678999999999996531 112222233333333
Q ss_pred -EEeeeccCCCCChHHHHHHHHHH
Q psy6781 306 -IAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 306 -v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
..|.+||+++.|++++.+.+.+.
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHHHH
Confidence 46788999999999988877653
No 410
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.47 E-value=0.00018 Score=70.29 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=36.9
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC----ccEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM----RRIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~----~~i~liDtPGi~ 393 (534)
+++|+++|.+|||||||||+|.+....... .|.++.+. ..+.+. -.+.++||||..
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 478999999999999999999986543222 23222221 112221 257899999954
No 411
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.46 E-value=0.0011 Score=69.27 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=80.0
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH---------HHHHHHHhhCCC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA---------HIENFLRREKPH 274 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~---------~le~~L~~~~~~ 274 (534)
.....++-|-||+.+-..+ .+|+..++.+- |+.+-++++|+|+. |...+++ +++.|=. .-..
T Consensus 205 ~~~sfv~ADIPGLIEGAs~---G~GLG~~FLrH----IERt~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~-~L~~ 275 (369)
T COG0536 205 GGESFVVADIPGLIEGASE---GVGLGLRFLRH----IERTRVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSP-KLAE 275 (369)
T ss_pred CCCcEEEecCccccccccc---CCCccHHHHHH----HHhhheeEEEEecC-cccCCCHHHHHHHHHHHHHHhhH-Hhcc
Confidence 3455678899998765543 34777766654 56778999999986 3332222 1222211 1247
Q ss_pred CcEEEEEeCCCC-CChhhHHHHHHHHhccCCeEEee-eccCCCCChHHHHHHHHHHhh
Q psy6781 275 KHLFFILNKVDL-VPIWVTQRWVAILSKEYPTIAFH-ASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 275 k~~IlVLNKiDL-v~~~~~~~wl~~l~~~~p~v~f~-~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||.|||+||+|+ .+.+..+...+++.+......+. +|+.++.|++.|+..+.+++.
T Consensus 276 K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~ 333 (369)
T COG0536 276 KPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLE 333 (369)
T ss_pred CceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHH
Confidence 999999999994 46667777777777654433332 899999999999988887655
No 412
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.45 E-value=0.00021 Score=69.78 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=73.9
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC----ccEEEEeCCCcccCCCCCcchHHHHHcccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM----RRIYLIDCPGVVYDMTNVETDTEKVLRGVV 411 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~----~~i~liDtPGi~~p~~~~~~~~e~vL~gvv 411 (534)
++|+++|.+|||||||||.|.+... .....|-.+.+. ..+.++ -.+.|+||||...+. ......++++.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~----~l~~~~~~~ad 75 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG----KMLDKYIYGAH 75 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH----HHHHHHhhcCC
Confidence 4689999999999999999997543 222223222222 122332 257899999964322 11222222221
Q ss_pred c---cccCCCch--hhHH---HHHHhh------ccceeeehcCCCCCCC---HHHHHHHHHHHhCCcc-----ccCcchH
Q psy6781 412 R---VENIDDPV--QYID---AVLERI------KKVHLVKTYGIDEWED---TEDFLKKLAFKWGKIK-----KKGEPVI 469 (534)
Q Consensus 412 ~---v~~i~~~~--~~i~---~iL~r~------~k~~l~~~ykId~~~d---~~efLe~la~k~g~l~-----kgG~pD~ 469 (534)
. +-.+.++. +.+. ..+.+. ..+.+.+.||+|.... ..+.+..+++..|.-. +.| -++
T Consensus 76 ~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg-~gv 154 (215)
T cd04109 76 AVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTG-DRV 154 (215)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCC-CCH
Confidence 1 11122321 1111 122222 1246778899997532 1244566777665311 223 366
Q ss_pred HHHHHHHHHHHHcCCCC
Q psy6781 470 TASAKMVLNDWQRGKLP 486 (534)
Q Consensus 470 ~~aA~~vL~d~~~Gkl~ 486 (534)
..+-..+.+.+..-+++
T Consensus 155 ~~lf~~l~~~l~~~~~~ 171 (215)
T cd04109 155 NLLFQQLAAELLGVDLS 171 (215)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 66666666666553333
No 413
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.44 E-value=0.00066 Score=65.37 Aligned_cols=123 Identities=14% Similarity=0.082 Sum_probs=75.8
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhh---CCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRRE---KPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~---~~~k~~IlVL 281 (534)
..+..++||||+.+.... .....+.+.+.++.....+|+||+|+|++. +...+..+.+.+... ...++.|+|+
T Consensus 48 ~~~i~viDTPG~~d~~~~---~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVS---PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred CeEEEEEECcCCCCccCC---hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEE
Confidence 456789999999875421 112345566666666788999999999987 555555555555432 1237899999
Q ss_pred eCCCCCChhhHHHH-------HHHHhccCC--eEEeeec---cCCCCChHHHHHHHHHHhhh
Q psy6781 282 NKVDLVPIWVTQRW-------VAILSKEYP--TIAFHAS---MTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 282 NKiDLv~~~~~~~w-------l~~l~~~~p--~v~f~~S---a~~~~gi~~Li~~L~~~~~~ 331 (534)
|++|-+....+..+ +..+-+.+. ...|... +.+..++..|++.+.++++.
T Consensus 124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 124 TRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred ECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 99997654322222 222222221 2344332 34556777888888877664
No 414
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.44 E-value=0.00095 Score=66.21 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=58.6
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEE-EEEeC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLF-FILNK 283 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~I-lVLNK 283 (534)
..+..+.||||.. ..+...++.+|+|++|+|+..++...+..+..++.. .++|.+ +|+||
T Consensus 82 ~~~i~~vDtPg~~-----------------~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK 142 (225)
T cd01882 82 KRRLTFIECPNDI-----------------NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTH 142 (225)
T ss_pred CceEEEEeCCchH-----------------HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEec
Confidence 4456788999721 344556788999999999998776665566666653 467755 49999
Q ss_pred CCCCChh-hHHHHHHHHhc-----cCC-eEEeeeccCCC
Q psy6781 284 VDLVPIW-VTQRWVAILSK-----EYP-TIAFHASMTHP 315 (534)
Q Consensus 284 iDLv~~~-~~~~wl~~l~~-----~~p-~v~f~~Sa~~~ 315 (534)
+|+++.. ......+.+.+ .++ .-++.+|++++
T Consensus 143 ~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 143 LDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 9998533 23333333322 222 34566777665
No 415
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.44 E-value=0.00027 Score=66.44 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=34.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeC---ccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~---~~i~liDtPGi~ 393 (534)
+|+++|.+|||||||++++.+.... -...|....... .+.+. ..+.++||||..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 5899999999999999999986431 111222211211 12222 368999999964
No 416
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.44 E-value=0.00028 Score=65.52 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=34.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
.+|+++|.+|||||||+++|.+..... ..+..+..... .+.++ -.+.++||||..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECCEEEEEEEEeCCCch
Confidence 478999999999999999999754311 11111111111 12222 257899999964
No 417
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.44 E-value=0.00055 Score=65.20 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=56.5
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhhCCCCcEEEEEeCCCCCCh-------------hhHHHHHHHHhccC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENF---LRREKPHKHLFFILNKVDLVPI-------------WVTQRWVAILSKEY 303 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~~~~k~~IlVLNKiDLv~~-------------~~~~~wl~~l~~~~ 303 (534)
.+.++|++|+|.|..++.+..+ .+..| +....++.|+|||.||+||.+. .......+.+.+.+
T Consensus 69 ~~~~a~~~ilvfdit~~~Sf~~-~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 147 (178)
T cd04131 69 CYPDSDAVLICFDISRPETLDS-VLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred hcCCCCEEEEEEECCChhhHHH-HHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 4679999999999988766532 12333 3334568899999999999541 01112223333334
Q ss_pred Ce-EEeeeccCCCCC-hHHHHHHHHH
Q psy6781 304 PT-IAFHASMTHPFG-KGSIINLLRQ 327 (534)
Q Consensus 304 p~-v~f~~Sa~~~~g-i~~Li~~L~~ 327 (534)
.. ..|.+||+++.+ ++++...+-.
T Consensus 148 ~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CCCEEEECccCcCCcCHHHHHHHHHH
Confidence 43 457889999984 8887766543
No 418
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.43 E-value=6.5e-05 Score=80.98 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchhHHHHhhhC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~ 359 (534)
++|+++|.+++|||||+++|+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~ 22 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLH 22 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHH
Confidence 3689999999999999999974
No 419
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.42 E-value=0.00018 Score=77.89 Aligned_cols=59 Identities=31% Similarity=0.422 Sum_probs=41.2
Q ss_pred cccceEEEEEecCCCchhHHHHhhhCCCce------------------------------eeCCCCCceeeeEEEEe---
Q psy6781 334 ERKQISVGFIGYPNVGKSSIINALRNKKVC------------------------------KTAPVPGETKVWQYITL--- 380 (534)
Q Consensus 334 ~~~~~~v~vvG~pnvGKSSliN~L~~~~~~------------------------------~v~~~pgtTk~~~~~~~--- 380 (534)
++..++|+++|.+++|||||+++|+..... ......|+|.+.....+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 346789999999999999999999842100 01123477776544333
Q ss_pred CccEEEEeCCCc
Q psy6781 381 MRRIYLIDCPGV 392 (534)
Q Consensus 381 ~~~i~liDtPGi 392 (534)
...+.|+||||.
T Consensus 84 ~~~i~iiDtpGh 95 (426)
T TIGR00483 84 KYEVTIVDCPGH 95 (426)
T ss_pred CeEEEEEECCCH
Confidence 347899999994
No 420
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.42 E-value=0.00052 Score=65.50 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=56.6
Q ss_pred hhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHH-------------HHHHhccCC-
Q psy6781 241 IDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWVTQRW-------------VAILSKEYP- 304 (534)
Q Consensus 241 I~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~w-------------l~~l~~~~p- 304 (534)
+..+|++|+|.|..++.+.... .+...+....++.|+|||.||+||......... ...+.....
T Consensus 69 ~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 148 (189)
T cd04134 69 YADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINA 148 (189)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 5689999999999887554321 122223333467899999999999754221100 111111222
Q ss_pred eEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 305 TIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 305 ~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
...|.+||+++.|++++...|...+
T Consensus 149 ~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 149 LRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred CEEEEccCCcCCCHHHHHHHHHHHH
Confidence 3467889999999999988887543
No 421
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.41 E-value=0.00052 Score=77.56 Aligned_cols=118 Identities=19% Similarity=0.076 Sum_probs=66.2
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCce--------eeC------CCCCceeeeEEEEe-----C---ccEEEEeCCCcccC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVC--------KTA------PVPGETKVWQYITL-----M---RRIYLIDCPGVVYD 395 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~--------~v~------~~pgtTk~~~~~~~-----~---~~i~liDtPGi~~p 395 (534)
.+++++|.+++|||||+++|+....+ .+. ...|.|.....+.+ + ..+.|+||||...-
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 47899999999999999999863211 111 12466655332222 2 36899999998743
Q ss_pred CCCCcchHHHHHccccccccC---CC---ch--hhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 396 MTNVETDTEKVLRGVVRVENI---DD---PV--QYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 396 ~~~~~~~~e~vL~gvv~v~~i---~~---~~--~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
. ......+.++..+-.+ .+ .. .++... .....+.+.+.||+|... +.+++++.++...|.
T Consensus 84 ~----~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~-~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~ 152 (595)
T TIGR01393 84 S----YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLA-LENDLEIIPVINKIDLPSADPERVKKEIEEVIGL 152 (595)
T ss_pred H----HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHH-HHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC
Confidence 2 1223333332111111 11 11 122222 223456788999999753 455666777776653
No 422
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.41 E-value=0.00073 Score=67.15 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=48.9
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
..+..+.||||..+ +..+....+..+|.+|+|+|+..........+.+.+.. .++|+|+|+||+
T Consensus 72 ~~~i~iiDTPG~~~--------------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKi 135 (222)
T cd01885 72 EYLINLIDSPGHVD--------------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKI 135 (222)
T ss_pred ceEEEEECCCCccc--------------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 34566899999642 23466778899999999999987765544444444332 468999999999
Q ss_pred CCC
Q psy6781 285 DLV 287 (534)
Q Consensus 285 DLv 287 (534)
|+.
T Consensus 136 D~~ 138 (222)
T cd01885 136 DRL 138 (222)
T ss_pred Ccc
Confidence 986
No 423
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.41 E-value=0.0012 Score=61.46 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=52.2
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh--hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR--EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~--~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
.+.++|++++|+|+.+|.+.. .+..++ .. ...+.|+|+|.||+||..... .......+.+.+....|.+|++
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (170)
T cd04115 72 YYRNVHAVVFVYDVTNMASFH--SLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAK 149 (170)
T ss_pred hhcCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEecc
Confidence 457899999999998775543 233333 22 124689999999999964321 1223333333333345677888
Q ss_pred C---CCChHHHHHHHH
Q psy6781 314 H---PFGKGSIINLLR 326 (534)
Q Consensus 314 ~---~~gi~~Li~~L~ 326 (534)
+ +.++++++..|.
T Consensus 150 ~~~~~~~i~~~f~~l~ 165 (170)
T cd04115 150 DPSENDHVEAIFMTLA 165 (170)
T ss_pred CCcCCCCHHHHHHHHH
Confidence 8 556666555544
No 424
>KOG1249|consensus
Probab=97.41 E-value=0.00041 Score=75.79 Aligned_cols=130 Identities=24% Similarity=0.300 Sum_probs=81.0
Q ss_pred HHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhc--------------
Q psy6781 236 ELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSK-------------- 301 (534)
Q Consensus 236 el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~-------------- 301 (534)
+..+..++--++..|+|..+-..+..+.+...+. .+..++++||+||.+....--..+.+..
T Consensus 103 ~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~----~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en 178 (572)
T KOG1249|consen 103 EKSEKQENPALARKVVDLSDEPCSIDPLLTNDVG----SPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGEN 178 (572)
T ss_pred hhhhhhhcccceEEeeecccCccccccchhhccc----CCceEeeccccccccccccchHHHHHHhhcccceeecccccC
Confidence 3344445544566777766554454455555443 2337999999999987542222222211
Q ss_pred cCCeEEe----eeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCce-----------eeC
Q psy6781 302 EYPTIAF----HASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVC-----------KTA 366 (534)
Q Consensus 302 ~~p~v~f----~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~-----------~v~ 366 (534)
.+|...| .++++.+.|+++|+-.|....... =.+.++|..|||||+++|+|+..+-| .++
T Consensus 179 ~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df~-----Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~ 253 (572)
T KOG1249|consen 179 LNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVDFR-----GDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATIS 253 (572)
T ss_pred CCcccchhhhhhhhhhhcccHHHHHHHhhheeecc-----CceeeeeecccchhhHHHHHhhhccccccccceeeeeecc
Confidence 1221112 346777999999988886433221 14678999999999999999986544 467
Q ss_pred CCCCceee
Q psy6781 367 PVPGETKV 374 (534)
Q Consensus 367 ~~pgtTk~ 374 (534)
+.||||..
T Consensus 254 dwpgTtls 261 (572)
T KOG1249|consen 254 DWPGTTLS 261 (572)
T ss_pred cCCccccc
Confidence 78888754
No 425
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.41 E-value=0.00027 Score=68.29 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=38.0
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeC----ccEEEEeCCCccc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM----RRIYLIDCPGVVY 394 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~----~~i~liDtPGi~~ 394 (534)
.++|+++|.+|||||||+|+|.+............+......... -.+.++||+|...
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~ 66 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE 66 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH
Confidence 378999999999999999999987654322211121222122222 2488999999754
No 426
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.40 E-value=0.00013 Score=82.22 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKV 362 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~ 362 (534)
...|+++|.+|+|||||+|+|++..+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v 31 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAV 31 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc
Confidence 45689999999999999999987653
No 427
>PLN03108 Rab family protein; Provisional
Probab=97.40 E-value=0.00033 Score=68.31 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=72.3
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceee-CCCCCceeeeEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccc--
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGV-- 410 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v-~~~pgtTk~~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gv-- 410 (534)
.++|+++|.+|||||||+|.|++...... .+..|.+.....+.++. .+.++||||...-. ......++++
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~----~~~~~~~~~ad~ 81 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR----SITRSYYRGAAG 81 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH----HHHHHHhccCCE
Confidence 47899999999999999999997643222 12223222222223322 57799999964221 1112222221
Q ss_pred -cccccCCCch------hhHHHHHHhh--ccceeeehcCCCCCCC---HHHHHHHHHHHhCCcc------cc-Ccch-HH
Q psy6781 411 -VRVENIDDPV------QYIDAVLERI--KKVHLVKTYGIDEWED---TEDFLKKLAFKWGKIK------KK-GEPV-IT 470 (534)
Q Consensus 411 -v~v~~i~~~~------~~i~~iL~r~--~k~~l~~~ykId~~~d---~~efLe~la~k~g~l~------kg-G~pD-~~ 470 (534)
+-+..+.++. .++..+.... ..+.+.+.+|+|.... ..+..+.+++..+... .+ |.-+ ..
T Consensus 82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 1111122222 2222222222 2456778899886532 2234556666655321 12 2122 34
Q ss_pred HHHHHHHHHHHcC
Q psy6781 471 ASAKMVLNDWQRG 483 (534)
Q Consensus 471 ~aA~~vL~d~~~G 483 (534)
.+++.+++.+..+
T Consensus 162 ~l~~~~~~~~~~~ 174 (210)
T PLN03108 162 KTAAKIYKKIQDG 174 (210)
T ss_pred HHHHHHHHHhhhc
Confidence 5566666665544
No 428
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.40 E-value=0.00047 Score=65.38 Aligned_cols=87 Identities=20% Similarity=0.272 Sum_probs=57.9
Q ss_pred hhhcCEEEEEEeCCCCCCC--CcHHHHHHHHh-hCCCCcEEEEEeCCCCCChhhHHHHHHHHh-----ccCCeEEeeecc
Q psy6781 241 IDSSDVVVYVLDVRDPMGT--RCAHIENFLRR-EKPHKHLFFILNKVDLVPIWVTQRWVAILS-----KEYPTIAFHASM 312 (534)
Q Consensus 241 I~nsDvVL~VvDAR~Pl~s--~~~~le~~L~~-~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~-----~~~p~v~f~~Sa 312 (534)
..++|.||+|+|+.++... .-..+.+++.. ...++|++|++||+|+.+.-........+. ...+..++.+|+
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeec
Confidence 4589999999999876421 11223344432 235799999999999865422233333332 134566788899
Q ss_pred CCCCChHHHHHHHHH
Q psy6781 313 THPFGKGSIINLLRQ 327 (534)
Q Consensus 313 ~~~~gi~~Li~~L~~ 327 (534)
.++.|+.+.+++|.+
T Consensus 159 ~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIE 173 (175)
T ss_dssp TTTBTHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHh
Confidence 999999999988875
No 429
>PLN00023 GTP-binding protein; Provisional
Probab=97.39 E-value=0.0021 Score=67.46 Aligned_cols=146 Identities=18% Similarity=0.076 Sum_probs=80.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeC----------------ccEEEEeCCCcccCCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLM----------------RRIYLIDCPGVVYDMTN 398 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~----------------~~i~liDtPGi~~p~~~ 398 (534)
..++|+++|..||||||||+.|.+.... ...+.-|.+.....+.++ -.+.|+||+|-..-.
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr-- 97 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK-- 97 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh--
Confidence 4689999999999999999999975431 122233333222222221 137899999963221
Q ss_pred CcchHHHHHccc---cccccCCCch------hhHHHHHHhh--------------ccceeeehcCCCCCCC---------
Q psy6781 399 VETDTEKVLRGV---VRVENIDDPV------QYIDAVLERI--------------KKVHLVKTYGIDEWED--------- 446 (534)
Q Consensus 399 ~~~~~e~vL~gv---v~v~~i~~~~------~~i~~iL~r~--------------~k~~l~~~ykId~~~d--------- 446 (534)
......+.++ +-+..+.+.. .++..+.... ....+.+-||+|....
T Consensus 98 --sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 98 --DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred --hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 1112222222 2222222221 1222222211 1346778899986432
Q ss_pred HHHHHHHHHHHhCCcc---------------------ccCcchHHHHHHHHHHHHHcCCC
Q psy6781 447 TEDFLKKLAFKWGKIK---------------------KKGEPVITASAKMVLNDWQRGKL 485 (534)
Q Consensus 447 ~~efLe~la~k~g~l~---------------------kgG~pD~~~aA~~vL~d~~~Gkl 485 (534)
..+....+|++.|.+- |-+..|.+.+-+.|..-.++-.+
T Consensus 176 ~~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (334)
T PLN00023 176 LVDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYF 235 (334)
T ss_pred cHHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhh
Confidence 3567788888888662 23456777776766666666443
No 430
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.37 E-value=0.00088 Score=77.01 Aligned_cols=70 Identities=19% Similarity=0.075 Sum_probs=52.2
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
...+..+.||||.++. ..++...+..+|++|+|+|+.+........+.+++.. .++|.|+|+||
T Consensus 73 ~~~~i~liDTPG~~~~--------------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK 136 (689)
T TIGR00484 73 KGHRINIIDTPGHVDF--------------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNK 136 (689)
T ss_pred CCeEEEEEECCCCcch--------------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEEC
Confidence 3567889999997531 1245567889999999999998766555555555543 47899999999
Q ss_pred CCCCCh
Q psy6781 284 VDLVPI 289 (534)
Q Consensus 284 iDLv~~ 289 (534)
+|+...
T Consensus 137 ~D~~~~ 142 (689)
T TIGR00484 137 MDKTGA 142 (689)
T ss_pred CCCCCC
Confidence 999854
No 431
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.37 E-value=0.00082 Score=64.39 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=56.2
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCCh-------------hhHHHHHHHHhccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPI-------------WVTQRWVAILSKEYP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~-------------~~~~~wl~~l~~~~p 304 (534)
.+.++|++|+|.|..++.+..+. .+...+....++.|+|||.||+||.+. .....-.+.+.+.+.
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 46799999999999887554321 122223334567899999999999531 011122233333334
Q ss_pred e-EEeeeccCCCCC-hHHHHHHHHH
Q psy6781 305 T-IAFHASMTHPFG-KGSIINLLRQ 327 (534)
Q Consensus 305 ~-v~f~~Sa~~~~g-i~~Li~~L~~ 327 (534)
. ..|.+||+++.| +.++...+-.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHH
Confidence 2 456789999998 9887766543
No 432
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.37 E-value=0.00041 Score=68.29 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=39.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeeeEEEEeC---ccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVWQYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+++++.... ....+..|.+.....+... -.+.++||||...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 568999999999999999999875432 2334444544332222222 3688999999753
No 433
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.36 E-value=0.00041 Score=65.30 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=69.3
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE-EEEeC---ccEEEEeCCCcccCCCCCcchHHHHHcccc-
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ-YITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGVV- 411 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~-~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gvv- 411 (534)
.++|+++|.+|||||||++.+........ ..|....... .+..+ -.+.|+||||..... ......+.++.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~l~~~~~~~~d~ 76 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDY-HDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT----AMRDQYMRCGEG 76 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC-cCCcccceEEEEEEECCEEEEEEEEeCCCchhhH----HHhHHHhhcCCE
Confidence 46899999999999999999987543211 1111111111 12222 257899999964322 11222233221
Q ss_pred --ccccCCCch--hhHH---HHHHhh----ccceeeehcCCCCCCC---HHHHHHHHHHHhCCcc-----ccCcchHHHH
Q psy6781 412 --RVENIDDPV--QYID---AVLERI----KKVHLVKTYGIDEWED---TEDFLKKLAFKWGKIK-----KKGEPVITAS 472 (534)
Q Consensus 412 --~v~~i~~~~--~~i~---~iL~r~----~k~~l~~~ykId~~~d---~~efLe~la~k~g~l~-----kgG~pD~~~a 472 (534)
-+-.+.++. +.+. ..+.+. ..+.+.+.||+|.... ..+-...+|+..+... +.| .+++.+
T Consensus 77 ~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~-~~v~~~ 155 (172)
T cd04141 77 FIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALR-HYIDDA 155 (172)
T ss_pred EEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCC-CCHHHH
Confidence 111122221 1111 223322 3466788899885421 1222345565555311 222 356666
Q ss_pred HHHHHHHHH
Q psy6781 473 AKMVLNDWQ 481 (534)
Q Consensus 473 A~~vL~d~~ 481 (534)
-..++..+.
T Consensus 156 f~~l~~~~~ 164 (172)
T cd04141 156 FHGLVREIR 164 (172)
T ss_pred HHHHHHHHH
Confidence 666665554
No 434
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.36 E-value=0.00028 Score=69.92 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=35.4
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-CccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-MRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||++.|........ .|-.......... .-.+.|+||||..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~--~~Tig~~~~~~~~~~~~l~iwDt~G~e 55 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT--VSTVGGAFYLKQWGPYNISIWDTAGRE 55 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC--CCccceEEEEEEeeEEEEEEEeCCCcc
Confidence 4689999999999999999998664322 2211111111111 2368899999964
No 435
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.36 E-value=0.0017 Score=60.19 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=56.4
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---hhC-CCCcEEEEEeCCCCCChh-hHHHHHHHHhccCCeEEeeeccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFLR---REK-PHKHLFFILNKVDLVPIW-VTQRWVAILSKEYPTIAFHASMTH 314 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~~~-~~k~~IlVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~ 314 (534)
.+.++|++++|.|..++.+. ..+..++. ... .+.|+++|.||+||.... ........+.+.+....|.+|+++
T Consensus 69 ~~~~~~~~i~v~d~~~~~sf--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 146 (161)
T cd04117 69 YYRRAQGIFLVYDISSERSY--QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACT 146 (161)
T ss_pred HhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 45699999999999876443 23444433 222 368999999999996432 112233333333333457889999
Q ss_pred CCChHHHHHHHHH
Q psy6781 315 PFGKGSIINLLRQ 327 (534)
Q Consensus 315 ~~gi~~Li~~L~~ 327 (534)
+.|++++...|.+
T Consensus 147 ~~~v~~~f~~l~~ 159 (161)
T cd04117 147 NSNIKESFTRLTE 159 (161)
T ss_pred CCCHHHHHHHHHh
Confidence 9999988877753
No 436
>PRK00007 elongation factor G; Reviewed
Probab=97.35 E-value=0.001 Score=76.50 Aligned_cols=70 Identities=16% Similarity=0.042 Sum_probs=54.6
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
..+..+.||||..+ +..++...+..+|++|+|+||..........+.+++.. .++|.|+++||+
T Consensus 74 ~~~~~liDTPG~~~--------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p~iv~vNK~ 137 (693)
T PRK00007 74 DHRINIIDTPGHVD--------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVPRIAFVNKM 137 (693)
T ss_pred CeEEEEEeCCCcHH--------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECC
Confidence 55778999999531 22357888899999999999998877666666666654 578999999999
Q ss_pred CCCChh
Q psy6781 285 DLVPIW 290 (534)
Q Consensus 285 DLv~~~ 290 (534)
|+.+..
T Consensus 138 D~~~~~ 143 (693)
T PRK00007 138 DRTGAD 143 (693)
T ss_pred CCCCCC
Confidence 998643
No 437
>PRK10218 GTP-binding protein; Provisional
Probab=97.34 E-value=0.0009 Score=75.76 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=66.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCce--e-------------eCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVC--K-------------TAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTN 398 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~--~-------------v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~ 398 (534)
-.+|+++|.+++|||||+++|+..... . .....|.|.......+ +..+.|+||||...-.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG-- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH--
Confidence 357999999999999999999963111 0 1123455654333322 4578999999975432
Q ss_pred CcchHHHHHcccccc----c---cCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHH
Q psy6781 399 VETDTEKVLRGVVRV----E---NIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFK 457 (534)
Q Consensus 399 ~~~~~e~vL~gvv~v----~---~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k 457 (534)
......+..+..+ + .+......+...+.....+.+..+||+|... +.++.++.+...
T Consensus 83 --~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l 147 (607)
T PRK10218 83 --GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDL 147 (607)
T ss_pred --HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHH
Confidence 1233344332211 1 1111123334444556677788999999753 444444444443
No 438
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.0011 Score=71.86 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=73.2
Q ss_pred EEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHH-HHHHhhCCCCcEEEEEeCCCCC
Q psy6781 209 IVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIE-NFLRREKPHKHLFFILNKVDLV 287 (534)
Q Consensus 209 l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le-~~L~~~~~~k~~IlVLNKiDLv 287 (534)
-++||||..+-.+ |.-+.++.+.-.|.||||...... .-+. -|++-+ .+..+|-||||+||-
T Consensus 79 nlIDTPGHVDFsY--------------EVSRSLAACEGalLvVDAsQGveA--QTlAN~YlAle-~~LeIiPViNKIDLP 141 (603)
T COG0481 79 NLIDTPGHVDFSY--------------EVSRSLAACEGALLVVDASQGVEA--QTLANVYLALE-NNLEIIPVLNKIDLP 141 (603)
T ss_pred EEcCCCCccceEE--------------EehhhHhhCCCcEEEEECccchHH--HHHHHHHHHHH-cCcEEEEeeecccCC
Confidence 3689999766544 233567788999999999865433 3343 355543 478899999999995
Q ss_pred C--hhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhc
Q psy6781 288 P--IWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHT 333 (534)
Q Consensus 288 ~--~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~ 333 (534)
. ++.+..-++..--.-..-++.+||++|.|++++++.+-+..|...
T Consensus 142 ~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 142 AADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred CCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 3 333333333322222345677899999999999999988766543
No 439
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.32 E-value=0.00075 Score=68.36 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=49.2
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||.. .+..++...+..+|.+++|+|+..........+.+++.. .++|.++|+||+
T Consensus 63 ~~~i~liDtPG~~--------------~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~ 126 (268)
T cd04170 63 GHKINLIDTPGYA--------------DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKM 126 (268)
T ss_pred CEEEEEEECcCHH--------------HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 3456789999952 123456677889999999999987655433344444433 478999999999
Q ss_pred CCCCh
Q psy6781 285 DLVPI 289 (534)
Q Consensus 285 DLv~~ 289 (534)
|+...
T Consensus 127 D~~~~ 131 (268)
T cd04170 127 DRERA 131 (268)
T ss_pred ccCCC
Confidence 99754
No 440
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.32 E-value=0.00027 Score=82.91 Aligned_cols=105 Identities=18% Similarity=0.121 Sum_probs=60.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCcee---------------ee---EEEEe----------------C
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK---------------VW---QYITL----------------M 381 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk---------------~~---~~~~~----------------~ 381 (534)
.-.+|+++|..++|||||+++|+...........|.|+ .. .+.+. +
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 35689999999999999999998543222222233222 11 11111 2
Q ss_pred ccEEEEeCCCcccCCCCCcchHHHHHcc-------ccccccCCCchhhHHHHHHhhccceeeehcCCCCC
Q psy6781 382 RRIYLIDCPGVVYDMTNVETDTEKVLRG-------VVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 382 ~~i~liDtPGi~~p~~~~~~~~e~vL~g-------vv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
..+.||||||...-. . +....+.. +...+.+......+...+.....+.+..+||+|..
T Consensus 98 ~~inliDtPGh~dF~--~--e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFS--S--EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHH--H--HHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 357899999975322 1 12222222 12223333334445555556667778899999976
No 441
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.31 E-value=0.00027 Score=71.17 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=35.2
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~ 393 (534)
++|+++|.+||||||||+++++..... ....|+.+ ...+.+.. .+.|+||+|..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 368999999999999999998654321 22222221 11223332 57799999964
No 442
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.31 E-value=0.0016 Score=60.98 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=55.5
Q ss_pred HhhhcCEEEEEEeCCCCCCCCc-HHH-HHHHHh-hCCCCcEEEEEeCCCCCChhhH-HHHHHHHhccCCeEEeeeccCCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRC-AHI-ENFLRR-EKPHKHLFFILNKVDLVPIWVT-QRWVAILSKEYPTIAFHASMTHP 315 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~-~~l-e~~L~~-~~~~k~~IlVLNKiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~ 315 (534)
.+..+|.+++|+|+.+...... ..+ ..++.. ...+.|+|+|.||+|+...... ......+...+....+.+|+.++
T Consensus 69 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (180)
T cd04137 69 YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAREN 148 (180)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4558999999999886432110 111 122221 2246799999999999643211 11223333333345678899999
Q ss_pred CChHHHHHHHHHHh
Q psy6781 316 FGKGSIINLLRQFS 329 (534)
Q Consensus 316 ~gi~~Li~~L~~~~ 329 (534)
.|+..+++.|....
T Consensus 149 ~gv~~l~~~l~~~~ 162 (180)
T cd04137 149 ENVEEAFELLIEEI 162 (180)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888887543
No 443
>KOG2655|consensus
Probab=97.31 E-value=0.00073 Score=71.44 Aligned_cols=152 Identities=21% Similarity=0.230 Sum_probs=81.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceee------CCCCCceeeeEEE--EeC-----ccEEEEeCCCcccCCCCCcchH
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKT------APVPGETKVWQYI--TLM-----RRIYLIDCPGVVYDMTNVETDT 403 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v------~~~pgtTk~~~~~--~~~-----~~i~liDtPGi~~p~~~~~~~~ 403 (534)
.++++++|.+|.|||||||+|+......- +..+-.|..+... .+. -++.++||||+...-. .....
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vd-ns~~w 99 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVD-NSNCW 99 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccc-ccccc
Confidence 58999999999999999999998743321 1122223333221 111 2678999999975431 11111
Q ss_pred HHHHccccccccCC-CchhhHHHH--HHh---hccceeeehcCCCCCCC---HH--HHHHHHHHHhCCc---cccC---c
Q psy6781 404 EKVLRGVVRVENID-DPVQYIDAV--LER---IKKVHLVKTYGIDEWED---TE--DFLKKLAFKWGKI---KKKG---E 466 (534)
Q Consensus 404 e~vL~gvv~v~~i~-~~~~~i~~i--L~r---~~k~~l~~~ykId~~~d---~~--efLe~la~k~g~l---~kgG---~ 466 (534)
+-++. .+. .-++|+.+- +.| ....+=+.+|=|.+|.. +. +++..++.+...+ .|.. .
T Consensus 100 ~pi~~------yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVN------YIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhH------HHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccccccceeeccccCCH
Confidence 11110 000 001111110 111 00122234566776653 22 4566666655432 1222 1
Q ss_pred chHHHHHHHHHHHHHcCCCCcccCCCCCC
Q psy6781 467 PVITASAKMVLNDWQRGKLPYYTVPEGFE 495 (534)
Q Consensus 467 pD~~~aA~~vL~d~~~Gkl~~~~~pp~~e 495 (534)
-.+...-..|..+...-.|+.|.+|...+
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 23455667899999999999998777665
No 444
>KOG1487|consensus
Probab=97.30 E-value=8.9e-05 Score=74.65 Aligned_cols=68 Identities=28% Similarity=0.422 Sum_probs=47.5
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEE-EeCccEEEEeCCCcccCCCCCcchHHHH
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYI-TLMRRIYLIDCPGVVYDMTNVETDTEKV 406 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~-~~~~~i~liDtPGi~~p~~~~~~~~e~v 406 (534)
-+|+++|+|.|||||+++-|.+... .++..-++|-.. -.+ .-+..+.|.|.|||+....++......+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qv 130 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQV 130 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEE
Confidence 3899999999999999999998653 555555655321 122 2356899999999998764443333333
No 445
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.30 E-value=0.002 Score=61.91 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=71.9
Q ss_pred EEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCC
Q psy6781 209 IVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVP 288 (534)
Q Consensus 209 l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~ 288 (534)
=+.+|||.. .-++||+-+. ..++-+|++||++.|.......+.+++....+ .|+++..||.||-+
T Consensus 71 ~LfgtPGq~-----------RF~fm~~~l~---~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~-ip~vVa~NK~DL~~ 135 (187)
T COG2229 71 HLFGTPGQE-----------RFKFMWEILS---RGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP-IPVVVAINKQDLFD 135 (187)
T ss_pred EEecCCCcH-----------HHHHHHHHHh---CCcceEEEEEecCCCcchHHHHHHHHHhhccC-CCEEEEeeccccCC
Confidence 356888831 2245665554 46899999999999988766677777765322 89999999999987
Q ss_pred hhhHHHHHHHHhcc-CCeEEeeeccCCCCChHHHHHHHH
Q psy6781 289 IWVTQRWVAILSKE-YPTIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 289 ~~~~~~wl~~l~~~-~p~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
.+..+...++|... ....+|..++.++.+..+.+..|.
T Consensus 136 a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 136 ALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLL 174 (187)
T ss_pred CCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHH
Confidence 66556666666554 244566778887877766555554
No 446
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.002 Score=69.34 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=74.7
Q ss_pred cccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCC-CcEE
Q psy6781 200 NYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPH-KHLF 278 (534)
Q Consensus 200 ~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~-k~~I 278 (534)
.+..++...-|+|.||. .+.+..+...+.-+|..++|||+.+.+... ..|-++...--+ ++-|
T Consensus 44 y~~~~d~~~~fIDvpgh--------------~~~i~~miag~~~~d~alLvV~~deGl~~q--tgEhL~iLdllgi~~gi 107 (447)
T COG3276 44 YRKLEDGVMGFIDVPGH--------------PDFISNLLAGLGGIDYALLVVAADEGLMAQ--TGEHLLILDLLGIKNGI 107 (447)
T ss_pred eccCCCCceEEeeCCCc--------------HHHHHHHHhhhcCCceEEEEEeCccCcchh--hHHHHHHHHhcCCCceE
Confidence 33445555678898883 223445556677899999999996544432 222221111123 4459
Q ss_pred EEEeCCCCCChhhHHHHHHHHhccC--C-eEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 279 FILNKVDLVPIWVTQRWVAILSKEY--P-TIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 279 lVLNKiDLv~~~~~~~wl~~l~~~~--p-~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+|+||+|++++..+....+.+.... + ..+|..|+..+.|+++|.+.|.++.
T Consensus 108 ivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 108 IVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred EEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 9999999998765555444443322 2 3458889999999999999999887
No 447
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.28 E-value=0.00046 Score=64.36 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=34.3
Q ss_pred EEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 340 VGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 340 v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
|+++|.+|||||||++.|.+... ....+..|... ..+..-...+.++||||-.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~-~~i~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS-VAIPTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce-EEEeeCCeEEEEEECCCCc
Confidence 68999999999999999997642 11222223221 1111123468999999964
No 448
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.27 E-value=0.00063 Score=63.26 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=55.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCCcchHHHHHccccccc---c
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVE---N 415 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~v~---~ 415 (534)
+|++||.+++|||||+++|.+... ....|...++ .. .+|||||=+.... .....++.-+..++ .
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~---~~--~~IDTPGEyiE~~---~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEY---YD--NTIDTPGEYIENP---RFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEe---cc--cEEECChhheeCH---HHHHHHHHHHhhCCEEEE
Confidence 689999999999999999998653 1223433332 22 3499999764431 11111111111111 1
Q ss_pred C---CCch-hhHHHHHHhhccceeeehcCCCCCCCHH
Q psy6781 416 I---DDPV-QYIDAVLERIKKVHLVKTYGIDEWEDTE 448 (534)
Q Consensus 416 i---~~~~-~~i~~iL~r~~k~~l~~~ykId~~~d~~ 448 (534)
+ .++. -+-..+..-..++.+-++.|+|...+..
T Consensus 70 l~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~ 106 (143)
T PF10662_consen 70 LQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDA 106 (143)
T ss_pred EecCCCCCccCCchhhcccCCCEEEEEECccCccchh
Confidence 1 1111 2333455566788899999999874433
No 449
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.26 E-value=0.00063 Score=63.12 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=55.7
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhhHH-------------HHHHHHhccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWVTQ-------------RWVAILSKEYP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~-------------~wl~~l~~~~p 304 (534)
.+.++|++|+|.|..++.+..+. .+...+....+++|+++|.||+||.+..... .....+.+.+.
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 35689999999999877543221 1223333335689999999999996532111 11122222222
Q ss_pred -eEEeeeccCCCCChHHHHHHHH
Q psy6781 305 -TIAFHASMTHPFGKGSIINLLR 326 (534)
Q Consensus 305 -~v~f~~Sa~~~~gi~~Li~~L~ 326 (534)
...|.+||+++.|++++.+.+.
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~ 170 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAI 170 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHH
Confidence 2467889999999999887665
No 450
>PRK12740 elongation factor G; Reviewed
Probab=97.25 E-value=0.0018 Score=74.18 Aligned_cols=68 Identities=16% Similarity=0.091 Sum_probs=48.1
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||..+ +..++...+..+|++|+|+|+..........+.+++.. .++|.|+|+||+
T Consensus 59 ~~~i~liDtPG~~~--------------~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~ 122 (668)
T PRK12740 59 GHKINLIDTPGHVD--------------FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKM 122 (668)
T ss_pred CEEEEEEECCCcHH--------------HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 45677899999531 22345667889999999999987654433333344433 478999999999
Q ss_pred CCCC
Q psy6781 285 DLVP 288 (534)
Q Consensus 285 DLv~ 288 (534)
|+..
T Consensus 123 D~~~ 126 (668)
T PRK12740 123 DRAG 126 (668)
T ss_pred CCCC
Confidence 9874
No 451
>PRK13351 elongation factor G; Reviewed
Probab=97.23 E-value=0.00042 Score=79.55 Aligned_cols=120 Identities=19% Similarity=0.197 Sum_probs=69.1
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC--ceeeCC---------------CCCceeee---EEEEeCccEEEEeCCCcccCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK--VCKTAP---------------VPGETKVW---QYITLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~--~~~v~~---------------~pgtTk~~---~~~~~~~~i~liDtPGi~~p~ 396 (534)
..+|+++|..|+|||||+++|+... ....+. ..|.|... .+......+.|+||||...-.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 4689999999999999999998521 111111 12333221 122234579999999985322
Q ss_pred CCCcchHHHHHcccc------cc-ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 397 TNVETDTEKVLRGVV------RV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 397 ~~~~~~~e~vL~gvv------~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
......+.++. .. +........+...+.....+.+...||+|... +..+.++.+..+.+.
T Consensus 88 ----~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 155 (687)
T PRK13351 88 ----GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGK 155 (687)
T ss_pred ----HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
Confidence 12233333221 11 11111122333445556677888999999764 566778887766554
No 452
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.23 E-value=0.00063 Score=64.95 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=34.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee-eEEEEeC---ccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV-WQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~-~~~~~~~---~~i~liDtPGi~ 393 (534)
+|+++|.+|||||||++.+.+...... ..|..... ...+..+ ..+.|+||||..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV-YEPTVFENYVHDIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc-cCCcceeeeEEEEEECCEEEEEEEEECCCCh
Confidence 689999999999999999997643221 11211111 1112222 257899999964
No 453
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.23 E-value=0.0022 Score=64.60 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=59.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhh-cCEEEEEEeCCCCCCCCc-HHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDS-SDVVVYVLDVRDPMGTRC-AHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~n-sDvVL~VvDAR~Pl~s~~-~~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.|+||+.......- ...+...+-+.+...+++ .++||+|+||+..+...+ ..+.+++.. .+++.|+|+||+
T Consensus 126 ~ltLIDlPGl~~~~~~~~-~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~ 202 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQ-PPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL 202 (240)
T ss_pred ceEEEeCCCccccccCCc-cHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence 456899999853211000 012345566667788884 569999999987666544 345555543 578999999999
Q ss_pred CCCChhhHHHHHHHHhc
Q psy6781 285 DLVPIWVTQRWVAILSK 301 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~ 301 (534)
|+.++. ..|+..+..
T Consensus 203 D~~~~~--~~~~~~~~~ 217 (240)
T smart00053 203 DLMDEG--TDARDILEN 217 (240)
T ss_pred CCCCcc--HHHHHHHhC
Confidence 998653 227776654
No 454
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0007 Score=70.96 Aligned_cols=109 Identities=21% Similarity=0.219 Sum_probs=69.9
Q ss_pred cccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC---CcHHHHHHHHhhCCCCcEE
Q psy6781 202 KEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT---RCAHIENFLRREKPHKHLF 278 (534)
Q Consensus 202 ~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s---~~~~le~~L~~~~~~k~~I 278 (534)
.+++..-|+-||||.....++.. --+..+|+.|+++|||..+.. |...|..+|. =+++|
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMa--------------TGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG----Irhvv 143 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMA--------------TGASTADLAILLVDARKGVLEQTRRHSFIASLLG----IRHVV 143 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhh--------------cccccccEEEEEEecchhhHHHhHHHHHHHHHhC----CcEEE
Confidence 35777788999999544333322 334589999999999976543 3334444443 37899
Q ss_pred EEEeCCCCCChh--hHHHHHHHHh----c--cCCeEEeeeccCCCCCh------------HHHHHHHHHH
Q psy6781 279 FILNKVDLVPIW--VTQRWVAILS----K--EYPTIAFHASMTHPFGK------------GSIINLLRQF 328 (534)
Q Consensus 279 lVLNKiDLv~~~--~~~~wl~~l~----~--~~p~v~f~~Sa~~~~gi------------~~Li~~L~~~ 328 (534)
+.+||+||++-. ......+.|. + ......+++||..|.++ ..|++.|...
T Consensus 144 vAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v 213 (431)
T COG2895 144 VAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETV 213 (431)
T ss_pred EEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhc
Confidence 999999999742 2233333222 2 12356788899877654 3577777643
No 455
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.20 E-value=0.00066 Score=64.15 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=35.5
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE-EEEeC---ccEEEEeCCCccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ-YITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~-~~~~~---~~i~liDtPGi~~ 394 (534)
++|+++|.+|||||||++.+..... .....|....... .+..+ -.+.|+||||-..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence 5799999999999999999997543 1111222111111 12222 2578999999753
No 456
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.17 E-value=0.00078 Score=62.96 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=35.8
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeC---ccEEEEeCCCccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~---~~i~liDtPGi~~ 394 (534)
++|+++|.+|||||||++++.+... ....+.++.+.. .+.++ ..+.++||||...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChh
Confidence 4689999999999999999986432 222333332211 12222 2578999999743
No 457
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.13 E-value=0.0047 Score=63.03 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=48.5
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
......+.||||..+ +..+.+..+..+|.+|+|+|+..........+.+++. ..++|+++++||
T Consensus 69 ~~~~i~liDTPG~~d--------------f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~--~~~~P~iivvNK 132 (267)
T cd04169 69 RDCVINLLDTPGHED--------------FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCR--LRGIPIITFINK 132 (267)
T ss_pred CCEEEEEEECCCchH--------------HHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHH--hcCCCEEEEEEC
Confidence 345567889999521 2234566778999999999998765433333444433 257899999999
Q ss_pred CCCCCh
Q psy6781 284 VDLVPI 289 (534)
Q Consensus 284 iDLv~~ 289 (534)
+|+...
T Consensus 133 ~D~~~a 138 (267)
T cd04169 133 LDREGR 138 (267)
T ss_pred CccCCC
Confidence 998654
No 458
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.13 E-value=0.0014 Score=74.18 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=64.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCc-----eee----------CCCCCceeeeEE---EEeCccEEEEeCCCcccCCCCCc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKV-----CKT----------APVPGETKVWQY---ITLMRRIYLIDCPGVVYDMTNVE 400 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~-----~~v----------~~~pgtTk~~~~---~~~~~~i~liDtPGi~~p~~~~~ 400 (534)
+|+++|..++|||||+++|+...- ..+ ....|.|..... .+-+..+.||||||...-.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 689999999999999999985211 111 112355544322 2235579999999974321
Q ss_pred chHHHHHcccccc----ccCCCc---hhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHH
Q psy6781 401 TDTEKVLRGVVRV----ENIDDP---VQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAF 456 (534)
Q Consensus 401 ~~~e~vL~gvv~v----~~i~~~---~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~ 456 (534)
.+.+..+..+..+ +....+ ...+...+...+.+.+.+.||+|... +..++++.+..
T Consensus 79 ~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~ 142 (594)
T TIGR01394 79 GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFD 142 (594)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHH
Confidence 1233344332211 111111 22334444555667789999999753 44455544443
No 459
>PRK13351 elongation factor G; Reviewed
Probab=97.12 E-value=0.0046 Score=71.12 Aligned_cols=69 Identities=20% Similarity=0.154 Sum_probs=49.6
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
..+..+.||||..+ +..+....+..+|.+|+|+|+..+.......+.+.+.. .++|+++|+||+
T Consensus 72 ~~~i~liDtPG~~d--------------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~ 135 (687)
T PRK13351 72 NHRINLIDTPGHID--------------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKM 135 (687)
T ss_pred CEEEEEEECCCcHH--------------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECC
Confidence 45677899999532 22345667889999999999987765443444444433 478999999999
Q ss_pred CCCCh
Q psy6781 285 DLVPI 289 (534)
Q Consensus 285 DLv~~ 289 (534)
|+...
T Consensus 136 D~~~~ 140 (687)
T PRK13351 136 DRVGA 140 (687)
T ss_pred CCCCC
Confidence 99753
No 460
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.11 E-value=0.0013 Score=61.18 Aligned_cols=86 Identities=8% Similarity=0.096 Sum_probs=55.7
Q ss_pred hhhcCEEEEEEeCCCCCCCCc-HHHHHHHHhhC--CCCcEEEEEeCCCCCC---hhhHHHHHHHHhccC-CeEEeeeccC
Q psy6781 241 IDSSDVVVYVLDVRDPMGTRC-AHIENFLRREK--PHKHLFFILNKVDLVP---IWVTQRWVAILSKEY-PTIAFHASMT 313 (534)
Q Consensus 241 I~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~~~--~~k~~IlVLNKiDLv~---~~~~~~wl~~l~~~~-p~v~f~~Sa~ 313 (534)
..++|++++|.|..++.+... ..+...+.... .+.|+++|.||+||.. ........+.+.+.. ....|.+||+
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 142 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCAT 142 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecC
Confidence 357999999999998766543 12222232222 4679999999999842 222223333343332 3456788999
Q ss_pred CCCChHHHHHHHH
Q psy6781 314 HPFGKGSIINLLR 326 (534)
Q Consensus 314 ~~~gi~~Li~~L~ 326 (534)
++.|++++...+.
T Consensus 143 ~~~~i~~~f~~~~ 155 (158)
T cd04103 143 YGLNVERVFQEAA 155 (158)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999887765
No 461
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.11 E-value=0.00098 Score=62.93 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=33.9
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+||||||||.++..... ....+..+..... .+..+ -.+.++||||-.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~ 60 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 60 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEE-EEEECCEEEEEEEEECCCch
Confidence 6799999999999999999986432 1111111111111 11222 257899999963
No 462
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.11 E-value=0.0048 Score=67.56 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=66.8
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC----CcHHHHHHHH-hhCCCCc-EE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT----RCAHIENFLR-REKPHKH-LF 278 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s----~~~~le~~L~-~~~~~k~-~I 278 (534)
....-+.|+||. ..+...+...+..+|.+|+|+||...... ......+++. ....++| +|
T Consensus 84 ~~~i~liDtPGh--------------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iI 149 (447)
T PLN00043 84 KYYCTVIDAPGH--------------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149 (447)
T ss_pred CEEEEEEECCCH--------------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEE
Confidence 445668999993 33456667778899999999999864211 1123333332 2234675 57
Q ss_pred EEEeCCCCCCh-hh-------HHHHHHHHhc-cCC---eEEeeeccCCCCChH------------HHHHHHHHH
Q psy6781 279 FILNKVDLVPI-WV-------TQRWVAILSK-EYP---TIAFHASMTHPFGKG------------SIINLLRQF 328 (534)
Q Consensus 279 lVLNKiDLv~~-~~-------~~~wl~~l~~-~~p---~v~f~~Sa~~~~gi~------------~Li~~L~~~ 328 (534)
+++||+|+.+. +. ......++.+ .+. ...+++|+.++.|+. .|++.|.++
T Consensus 150 V~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i 223 (447)
T PLN00043 150 CCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQI 223 (447)
T ss_pred EEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhhc
Confidence 88999998732 11 2222233332 221 346788999888763 477877765
No 463
>KOG0410|consensus
Probab=97.07 E-value=0.0003 Score=72.88 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=38.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCC----CCceeeeEEEEeCccEEEEeCCCcccC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPV----PGETKVWQYITLMRRIYLIDCPGVVYD 395 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~----pgtTk~~~~~~~~~~i~liDtPGi~~p 395 (534)
...|++|||+|+|||||||+|++... ...+. -.+|.+.-...-+.-+.+.||-||...
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal-~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAAL-YPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD 239 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhc-CccchhheeccchhhhccCCCCcEEEEeechhhhhh
Confidence 45789999999999999999995322 11111 224444322233456899999999853
No 464
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.07 E-value=0.0021 Score=59.64 Aligned_cols=87 Identities=15% Similarity=0.123 Sum_probs=53.8
Q ss_pred hhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh--hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCC-eEEeeeccCCC
Q psy6781 241 IDSSDVVVYVLDVRDPMGTRC-AHIENFLRR--EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYP-TIAFHASMTHP 315 (534)
Q Consensus 241 I~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~--~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p-~v~f~~Sa~~~ 315 (534)
+..+|.+++|+|..++..... ..+...+.. ...+.|+|+|.||+|+.+... ...-...+.+.+. ...|.+||+++
T Consensus 70 ~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 70 IKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 457899999999887643321 111122221 235789999999999975421 1111122222333 34678899999
Q ss_pred CChHHHHHHHHH
Q psy6781 316 FGKGSIINLLRQ 327 (534)
Q Consensus 316 ~gi~~Li~~L~~ 327 (534)
.|++.+++.|-.
T Consensus 150 ~~i~~~f~~i~~ 161 (168)
T cd04177 150 TNVDEVFIDLVR 161 (168)
T ss_pred CCHHHHHHHHHH
Confidence 999988877753
No 465
>KOG0075|consensus
Probab=97.07 E-value=0.013 Score=54.82 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=79.9
Q ss_pred cccccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCC---CCcHHHHHHHHh-hCC
Q psy6781 198 NENYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMG---TRCAHIENFLRR-EKP 273 (534)
Q Consensus 198 ~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~---s~~~~le~~L~~-~~~ 273 (534)
.-+|+...-.+.+-|-+|- ...+.||+..++ .+|+|++||||.+|.. ++ .++..+|-+ .-.
T Consensus 57 mrk~tkgnvtiklwD~gGq-----------~rfrsmWerycR---~v~aivY~VDaad~~k~~~sr-~EL~~LL~k~~l~ 121 (186)
T KOG0075|consen 57 MRKVTKGNVTIKLWDLGGQ-----------PRFRSMWERYCR---GVSAIVYVVDAADPDKLEASR-SELHDLLDKPSLT 121 (186)
T ss_pred eEEeccCceEEEEEecCCC-----------ccHHHHHHHHhh---cCcEEEEEeecCCcccchhhH-HHHHHHhcchhhc
Confidence 4455533334455666663 236778988877 7899999999998753 23 345555543 345
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHHHHh--cc--CCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 274 HKHLFFILNKVDLVPIWVTQRWVAILS--KE--YPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 274 ~k~~IlVLNKiDLv~~~~~~~wl~~l~--~~--~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
++|++++-||.|+-..-.-.+.++.+. .. -....|.+|+++..+++.++++|.+.++
T Consensus 122 gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 122 GIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred CCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 899999999999965433334444432 11 1256799999999999999999987654
No 466
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.06 E-value=0.0031 Score=60.94 Aligned_cols=112 Identities=11% Similarity=0.054 Sum_probs=64.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
+..+.|+||+..... ....+.+++ .+..+|++++|.|. ++...+..+.+.+.. .++++++|+||||+
T Consensus 53 ~l~l~DtpG~~~~~~-------~~~~~l~~~--~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~ 119 (197)
T cd04104 53 NVTLWDLPGIGSTAF-------PPDDYLEEM--KFSEYDFFIIISST--RFSSNDVKLAKAIQC--MGKKFYFVRTKVDR 119 (197)
T ss_pred CceEEeCCCCCcccC-------CHHHHHHHh--CccCcCEEEEEeCC--CCCHHHHHHHHHHHH--hCCCEEEEEecccc
Confidence 456889999864322 112222222 25678999998654 455555556666654 36899999999999
Q ss_pred CChhh---------HHHHHHH----Hh----cc--CCeEEeeeccC--CCCChHHHHHHHHHHhhh
Q psy6781 287 VPIWV---------TQRWVAI----LS----KE--YPTIAFHASMT--HPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 287 v~~~~---------~~~wl~~----l~----~~--~p~v~f~~Sa~--~~~gi~~Li~~L~~~~~~ 331 (534)
..+.. ....++. +. .. ....+|.+|+. .+++...|.+.+..-++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 120 DLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred hhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 53211 1121221 11 11 11235556665 457888888877765554
No 467
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.05 E-value=0.0034 Score=65.75 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=40.1
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHHHHhccC-CeEEeeeccCCCCChHHHHH-HHHHHhhhh
Q psy6781 274 HKHLFFILNKVDLVPIWVTQRWVAILSKEY-PTIAFHASMTHPFGKGSIIN-LLRQFSKLH 332 (534)
Q Consensus 274 ~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~-p~v~f~~Sa~~~~gi~~Li~-~L~~~~~~~ 332 (534)
.+|.|+|+||+|+........++. ..+ ...++.+||..+.++..|.+ .+.++++..
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~~~~l~---~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 214 SKPMVIAANKADIPDAENNISKLR---LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred CCcEEEEEEHHHccChHHHHHHHH---hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 479999999999875543333222 222 34578889999999999997 588887643
No 468
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.05 E-value=0.0051 Score=64.10 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=67.8
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhh-cCEEEEEEeCCCCCCCCcH---HHHHHHHhhCCCCcEEEEEeC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDS-SDVVVYVLDVRDPMGTRCA---HIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~n-sDvVL~VvDAR~Pl~s~~~---~le~~L~~~~~~k~~IlVLNK 283 (534)
.-++||||+.+-+-+ -...+-+++--+|.. .|+||+++|++.--+..-+ .|.+-++... ..|+++|+||
T Consensus 217 ~QvIDTPGlLDRPl~------ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-~~p~v~V~nK 289 (346)
T COG1084 217 IQVIDTPGLLDRPLE------ERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-KAPIVVVINK 289 (346)
T ss_pred EEEecCCcccCCChH------HhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 446899999875432 122333444444444 4799999999733222111 1222233333 4899999999
Q ss_pred CCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 284 VDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
+|++..+.......++...........++..+.+.+.+...+...
T Consensus 290 ~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 290 IDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 999988777666666555443333445566667777666555543
No 469
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.03 E-value=0.0015 Score=63.64 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=35.3
Q ss_pred cceEEEEEecCCCchhHHHHhhh-CCCceeeCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALR-NKKVCKTAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~-~~~~~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||++.+. +.......+..|.......+..+ -.+.++||||-.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 46899999999999999997654 33221222223332221112122 257899999963
No 470
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.02 E-value=0.0014 Score=62.52 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=35.5
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||++.++...... ..+.-|..-....+.++ -.+.++||+|-.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch
Confidence 468999999999999999998754321 11222222111223333 257899999964
No 471
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.02 E-value=0.00096 Score=70.30 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=75.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeC---CCCCc----eeeeEEE--Ee-----CccEEEEeCCCcccCCCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTA---PVPGE----TKVWQYI--TL-----MRRIYLIDCPGVVYDMTNVET 401 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~---~~pgt----Tk~~~~~--~~-----~~~i~liDtPGi~~p~~~~~~ 401 (534)
-.++|+++|.+|.||||+||+|++....... +..+. |...... .+ .-++.+|||||+..--. ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id-Ns~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID-NSK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc-ccc
Confidence 4789999999999999999999987432221 22221 1111111 11 12689999999975431 222
Q ss_pred hHHHHHccccccccCCCchhhHHHHH--Hhh----ccceeeehcCCCCCCC---H--HHHHHHHHHHhCCc---cccCc-
Q psy6781 402 DTEKVLRGVVRVENIDDPVQYIDAVL--ERI----KKVHLVKTYGIDEWED---T--EDFLKKLAFKWGKI---KKKGE- 466 (534)
Q Consensus 402 ~~e~vL~gvv~v~~i~~~~~~i~~iL--~r~----~k~~l~~~ykId~~~d---~--~efLe~la~k~g~l---~kgG~- 466 (534)
-.+-++.-+. . .-+.|+..-. .|. ...+=+.+|=|.+..+ + .+++..++.+...+ .|...
T Consensus 101 ~we~I~~yI~-~----q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYID-D----QFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHH-H----HHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcccCeeeeeeccccC
Confidence 2222221110 0 0011221110 111 0111123344544332 2 24455555554422 23222
Q ss_pred --chHHHHHHHHHHHHHcCCCCccc
Q psy6781 467 --PVITASAKMVLNDWQRGKLPYYT 489 (534)
Q Consensus 467 --pD~~~aA~~vL~d~~~Gkl~~~~ 489 (534)
..+...-..|.+++..-.|+.|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 23344557899999999999998
No 472
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.00 E-value=0.00063 Score=78.55 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCC---------------CceeeCCCCCceeeeEEEEe----
Q psy6781 320 SIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNK---------------KVCKTAPVPGETKVWQYITL---- 380 (534)
Q Consensus 320 ~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~---------------~~~~v~~~pgtTk~~~~~~~---- 380 (534)
.+.+.+.+++.... ...+|+++|..++|||||+++|+.. .........|.|.....+..
T Consensus 4 ~~~~~~~~~~~~~~--~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 81 (720)
T TIGR00490 4 KMIDKIKELMWKPK--FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY 81 (720)
T ss_pred hHHHHHHHHhhCcc--cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee
Q ss_pred ---CccEEEEeCCCcccCCCC---CcchHHHHHccccccccCCCchhhHHHHHHhhccceeeehcCCCC-CCCHHHHHHH
Q psy6781 381 ---MRRIYLIDCPGVVYDMTN---VETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDE-WEDTEDFLKK 453 (534)
Q Consensus 381 ---~~~i~liDtPGi~~p~~~---~~~~~e~vL~gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~-~~d~~efLe~ 453 (534)
+..+.|+||||...-... .-..++.++..+...+.+......+...+.....+.+...||+|. ..+....++.
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~ 161 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQE 161 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHH
Q ss_pred HHHHhC
Q psy6781 454 LAFKWG 459 (534)
Q Consensus 454 la~k~g 459 (534)
+..+.+
T Consensus 162 ~~~~~~ 167 (720)
T TIGR00490 162 LQERFI 167 (720)
T ss_pred HHHHHh
No 473
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.00 E-value=0.0016 Score=61.99 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=34.7
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee-EEEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW-QYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~-~~~~~~---~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||++.+.+... .....|...... ..+.++ -.+.++||||-.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~ 60 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFEIDEQRIELSLWDTSGSP 60 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCch
Confidence 5799999999999999999987542 111112111111 112222 257899999963
No 474
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0036 Score=65.08 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=69.8
Q ss_pred EEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH-hh-CCCCcEEEEEeCCCC
Q psy6781 209 IVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR-RE-KPHKHLFFILNKVDL 286 (534)
Q Consensus 209 l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~-~~-~~~k~~IlVLNKiDL 286 (534)
-|.|.|| ++-+|+. +..-.+-.|-.|.|++|..|-.. +.-.++|. .+ -.-+++|+|=||+||
T Consensus 89 SfVDaPG-----He~LMAT---------MLsGAAlMDgAlLvIaANEpcPQ--PQT~EHl~AleIigik~iiIvQNKIDl 152 (415)
T COG5257 89 SFVDAPG-----HETLMAT---------MLSGAALMDGALLVIAANEPCPQ--PQTREHLMALEIIGIKNIIIVQNKIDL 152 (415)
T ss_pred EEeeCCc-----hHHHHHH---------HhcchhhhcceEEEEecCCCCCC--CchHHHHHHHhhhccceEEEEecccce
Confidence 3788898 3445543 22334567999999999977543 22222222 11 123788999999999
Q ss_pred CChhhHHHHHHH---HhccC---CeEEeeeccCCCCChHHHHHHHHHHhhhh
Q psy6781 287 VPIWVTQRWVAI---LSKEY---PTIAFHASMTHPFGKGSIINLLRQFSKLH 332 (534)
Q Consensus 287 v~~~~~~~wl~~---l~~~~---p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~ 332 (534)
+..+....-.+. |-+.. ..-++++||.+..+++.|+++|..+.+..
T Consensus 153 V~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 153 VSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred ecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 987643322222 22211 13467889999999999999999988754
No 475
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.98 E-value=0.00071 Score=73.96 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.6
Q ss_pred ccceEEEEEecCCCchhHHHHhhhC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
+..++|+++|..++|||||+.+|+.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~ 29 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIY 29 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHH
Confidence 4678999999999999999999974
No 476
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.97 E-value=0.0013 Score=62.25 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=41.8
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-CccEEEEeCCCcc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-MRRIYLIDCPGVV 393 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi~ 393 (534)
.+..+|.++|.+|+||||+++.|.......+.+.-|.... .+.. +..+.++|.+|=.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~~~~~~~~d~gG~~ 69 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYKGYSLTIWDLGGQE 69 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEETTEEEEEEEESSSG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeCcEEEEEEeccccc
Confidence 4689999999999999999999998766555544443322 2222 4478999999953
No 477
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.96 E-value=0.0051 Score=61.10 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=53.7
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhh-------------HHHHHHHHhccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWV-------------TQRWVAILSKEYP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~-------------~~~wl~~l~~~~p 304 (534)
.+.++|++|+|.|..++.+..+. .+...+....++.|+|||.||+||..... ...-...+.+...
T Consensus 69 ~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~ 148 (222)
T cd04173 69 AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG 148 (222)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC
Confidence 46799999999999988544321 11122233446799999999999964211 1111222333333
Q ss_pred e-EEeeeccCCCC-ChHHHHHHHHH
Q psy6781 305 T-IAFHASMTHPF-GKGSIINLLRQ 327 (534)
Q Consensus 305 ~-v~f~~Sa~~~~-gi~~Li~~L~~ 327 (534)
. ..|..||+++. |+.++......
T Consensus 149 ~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 149 AVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred CCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 2 45677998877 48877665543
No 478
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.96 E-value=0.0022 Score=72.60 Aligned_cols=119 Identities=18% Similarity=0.081 Sum_probs=64.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCce--------ee------CCCCCceeeeEEEEe--------CccEEEEeCCCccc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVC--------KT------APVPGETKVWQYITL--------MRRIYLIDCPGVVY 394 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~--------~v------~~~pgtTk~~~~~~~--------~~~i~liDtPGi~~ 394 (534)
-.+++++|..++|||||+++|+..... .+ ....|.|...+.+.+ ...+.|+||||...
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 347899999999999999999753110 11 112355543322221 23588999999874
Q ss_pred CCCCCcchHHHHHcccc------cc-ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhC
Q psy6781 395 DMTNVETDTEKVLRGVV------RV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWG 459 (534)
Q Consensus 395 p~~~~~~~~e~vL~gvv------~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g 459 (534)
-. ......+.++. .. +.+..........+.....+.+.+.||+|... +.++.++.++...|
T Consensus 87 F~----~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg 155 (600)
T PRK05433 87 FS----YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIG 155 (600)
T ss_pred HH----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhC
Confidence 32 12223333221 11 11111111111222334566788999999753 45555666666554
No 479
>KOG1145|consensus
Probab=96.93 E-value=0.012 Score=64.92 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=67.7
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
..+-|.||||. .-|++ ++ .+-+.-.|+|++||.|.|.....-.+..++.+ ..+.|+|+.+||||
T Consensus 201 ~~iTFLDTPGH------aAF~a--MR------aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk--~A~VpiVvAinKiD 264 (683)
T KOG1145|consen 201 KSITFLDTPGH------AAFSA--MR------ARGANVTDIVVLVVAADDGVMPQTLEAIKHAK--SANVPIVVAINKID 264 (683)
T ss_pred CEEEEecCCcH------HHHHH--HH------hccCccccEEEEEEEccCCccHhHHHHHHHHH--hcCCCEEEEEeccC
Confidence 44679999993 23333 11 12344679999999998766543323333343 36899999999999
Q ss_pred CCChhhHHHHHHHHhc-c-------CCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 286 LVPIWVTQRWVAILSK-E-------YPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~-~-------~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
-...+ ..+....|.. . ..+-++.+||+++.|++.|.+.+.-+
T Consensus 265 kp~a~-pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 265 KPGAN-PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred CCCCC-HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHH
Confidence 75332 2233333322 1 23567899999999999998876543
No 480
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.91 E-value=0.0021 Score=62.02 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=63.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHcccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGVV 411 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gvv 411 (534)
..++|+++|.+|||||||+.++...... ...+.+|..-....+..+ -.+.|+||||-.... .......+++.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~----~l~~~~~~~ad 80 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC----TIFRSYSRGAQ 80 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH----HHHHHHhcCCC
Confidence 3578999999999999999999975321 111222221111122223 257899999974322 11122222221
Q ss_pred ---ccccCCCc------hhhHHHHHHhh-ccceeeehcCCCCCCC---HHHHHHHHHHHhCC
Q psy6781 412 ---RVENIDDP------VQYIDAVLERI-KKVHLVKTYGIDEWED---TEDFLKKLAFKWGK 460 (534)
Q Consensus 412 ---~v~~i~~~------~~~i~~iL~r~-~k~~l~~~ykId~~~d---~~efLe~la~k~g~ 460 (534)
=+-.+.++ ..++..+.... ..+.+.+-||+|.... ..+-...+|++.+.
T Consensus 81 ~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~ 142 (189)
T cd04121 81 GIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM 142 (189)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCC
Confidence 11122222 12233332221 2455778899886431 23446777776663
No 481
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.91 E-value=0.0016 Score=59.54 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=0.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCC-ceeeCCCCCceeeeEEEEeCc---cEEEEeCCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLMR---RIYLIDCPG 391 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~-~~~v~~~pgtTk~~~~~~~~~---~i~liDtPG 391 (534)
+|+++|.++||||||+++|.+.. .-...+..|.......+.... .+.|+|++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 57 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSG 57 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccc
No 482
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.89 E-value=0.001 Score=76.93 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCcee----------------------eeE
Q psy6781 319 GSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK----------------------VWQ 376 (534)
Q Consensus 319 ~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk----------------------~~~ 376 (534)
....+.+.+++.... .-.+|+++|..++|||||+.+|+...-.......|.++ .|+
T Consensus 4 ~~~~~~~~~~~~~~~--~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~ 81 (731)
T PRK07560 4 KKMVEKILELMKNPE--QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHE 81 (731)
T ss_pred hHHHHHHHHHhhchh--cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEE
Q ss_pred EEEeCccEEEEeCCCcccCCCCCcch-----HHHHHccccccccCCCchhhHHHHHHhhccceeeehcCCC
Q psy6781 377 YITLMRRIYLIDCPGVVYDMTNVETD-----TEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGID 442 (534)
Q Consensus 377 ~~~~~~~i~liDtPGi~~p~~~~~~~-----~e~vL~gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId 442 (534)
+...+..+.|+||||...-. .+.. ++.++..+...+.+......+...+.....+.+..+||+|
T Consensus 82 ~~~~~~~i~liDtPG~~df~--~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D 150 (731)
T PRK07560 82 YEGKEYLINLIDTPGHVDFG--GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVD 150 (731)
T ss_pred ecCCcEEEEEEcCCCccChH--HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECch
No 483
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.88 E-value=0.0022 Score=61.05 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=33.2
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE-EEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ-YITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~-~~~~~---~~i~liDtPGi~ 393 (534)
.+|+++|.+|||||||+|.|....... ...|....... .+.+. ..+.++||||..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 60 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQE 60 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCCh
Confidence 478999999999999999998433211 11121111111 11222 246799999964
No 484
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.87 E-value=0.0023 Score=60.83 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=55.4
Q ss_pred hhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhhH-----------HHHHHHHhccCC-eE
Q psy6781 241 IDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWVT-----------QRWVAILSKEYP-TI 306 (534)
Q Consensus 241 I~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~~-----------~~wl~~l~~~~p-~v 306 (534)
+.++|.+++|.|..++.+.... .+...+....++.|+|+|.||+||.+.... ..-...+.+.+. ..
T Consensus 70 ~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (187)
T cd04129 70 YSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKK 149 (187)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcE
Confidence 4689999999999766533211 122223333457999999999999642100 011122222232 24
Q ss_pred EeeeccCCCCChHHHHHHHHHH
Q psy6781 307 AFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 307 ~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
.|.+|++++.|++++++.|.+.
T Consensus 150 ~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 150 YMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHH
Confidence 5778999999999999888753
No 485
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.84 E-value=0.0015 Score=64.94 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.2
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy6781 339 SVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~ 359 (534)
+|+++|.+++|||||+++|..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~ 21 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ 21 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999985
No 486
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.80 E-value=0.0025 Score=62.24 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=71.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHcccc---
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGVV--- 411 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gvv--- 411 (534)
.|+++|.+||||||||+.+....... ..+..|..-....+.++ -.+.++||+|-..-. ......++++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~----~l~~~y~~~ad~iI 77 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN----SITSAYYRSAKGII 77 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH----HHHHHHhcCCCEEE
Confidence 58899999999999999998654311 11122211111223333 357899999964211 11223333322
Q ss_pred ccccCCCch--hhHH---HHHHhh---ccceeeehcCCCCCCC---HHHHHHHHHHHh-CCc-----cccCcchHHHHHH
Q psy6781 412 RVENIDDPV--QYID---AVLERI---KKVHLVKTYGIDEWED---TEDFLKKLAFKW-GKI-----KKKGEPVITASAK 474 (534)
Q Consensus 412 ~v~~i~~~~--~~i~---~iL~r~---~k~~l~~~ykId~~~d---~~efLe~la~k~-g~l-----~kgG~pD~~~aA~ 474 (534)
=+-.+.++. +.+. ..+... ..+.+.+.||+|.... ..+..+.+|+.. +.. .+.|. ++..+-.
T Consensus 78 lVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~-gV~e~F~ 156 (202)
T cd04120 78 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNF-NVDEIFL 156 (202)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCC-CHHHHHH
Confidence 122223332 1122 223322 2456778899986432 123445666653 321 13332 6667777
Q ss_pred HHHHHHHc
Q psy6781 475 MVLNDWQR 482 (534)
Q Consensus 475 ~vL~d~~~ 482 (534)
.+++.+..
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 77776654
No 487
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.70 E-value=0.022 Score=61.96 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=68.5
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHH-HHHHhhCCCCcEEEEEeCCCC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIE-NFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le-~~L~~~~~~k~~IlVLNKiDL 286 (534)
+-+.||||.-+- =.+..+++..+|-|+.||||.......-.++. +.|+ .+.++|+|+||+|-
T Consensus 70 INIvDTPGHADF--------------GGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~---~gL~PIVVvNKiDr 132 (603)
T COG1217 70 INIVDTPGHADF--------------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA---LGLKPIVVINKIDR 132 (603)
T ss_pred EEEecCCCcCCc--------------cchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH---cCCCcEEEEeCCCC
Confidence 446899995331 25777899999999999999865444434443 3343 57889999999997
Q ss_pred C---ChhhHHHHHHHHhcc------CCeEEeeeccCCCC----------ChHHHHHHHHHHhhhh
Q psy6781 287 V---PIWVTQRWVAILSKE------YPTIAFHASMTHPF----------GKGSIINLLRQFSKLH 332 (534)
Q Consensus 287 v---~~~~~~~wl~~l~~~------~p~v~f~~Sa~~~~----------gi~~Li~~L~~~~~~~ 332 (534)
. |.|+.......|-.. ...-++.+|+.+|. ....|.+.|-+..|..
T Consensus 133 p~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 133 PDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 5 346666655555431 11223456665543 3445666666655543
No 488
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.69 E-value=0.0035 Score=59.81 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=35.6
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~ 394 (534)
++|+++|.++||||||+..+....... ..+.-|.+-.. .+..+ -.+.++||+|-..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~-~~~~~~~~v~l~i~Dt~G~~~ 61 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVSVDGNTVNLGLWDTAGQED 61 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEE-EEEECCEEEEEEEEECCCCcc
Confidence 579999999999999999999754311 11111221111 12222 2578999999643
No 489
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.68 E-value=0.0032 Score=60.30 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=35.3
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
.++|+++|.+|||||||++.+...... ...+.-|..... .+.++. .+.++||||-.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAVDGRTVSLNLWDTAGQE 62 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEECCEEEEEEEEECCCch
Confidence 478999999999999999999865321 111111211111 122332 47899999964
No 490
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.68 E-value=0.0025 Score=61.91 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.7
Q ss_pred eEEEEEecCCCchhHHHHhhhCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
++||++|..++|||||+.+|.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999764
No 491
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.68 E-value=0.0033 Score=61.52 Aligned_cols=56 Identities=23% Similarity=0.188 Sum_probs=35.3
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC--------ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM--------RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~--------~~i~liDtPGi~ 393 (534)
++|+++|.++||||||++.+.+..... ..+..|.+.....+... -.+.|+||+|-.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 478999999999999999999764321 11122222211222221 147899999964
No 492
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.67 E-value=0.0036 Score=62.20 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=35.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE-EEEeC---ccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ-YITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~-~~~~~---~~i~liDtPGi~ 393 (534)
++|++||.+||||||||+.+..... .....|.+..... .+.++ -.+.|+||+|-.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e 60 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSS 60 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEEECCEEEEEEEEeCCCcH
Confidence 5799999999999999999987542 1122232211111 12232 257889999963
No 493
>PRK12740 elongation factor G; Reviewed
Probab=96.62 E-value=0.0016 Score=74.43 Aligned_cols=114 Identities=20% Similarity=0.176 Sum_probs=62.1
Q ss_pred EecCCCchhHHHHhhhCCCce--eeCC---------------CCCceeeeE---EEEeCccEEEEeCCCcccCCCCCcch
Q psy6781 343 IGYPNVGKSSIINALRNKKVC--KTAP---------------VPGETKVWQ---YITLMRRIYLIDCPGVVYDMTNVETD 402 (534)
Q Consensus 343 vG~pnvGKSSliN~L~~~~~~--~v~~---------------~pgtTk~~~---~~~~~~~i~liDtPGi~~p~~~~~~~ 402 (534)
||.+|+|||||+|+|...... ..+. .+|.|.... +...+..+.|+||||...-. ..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~----~~ 76 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT----GE 76 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH----HH
Confidence 689999999999999543211 1111 134443322 22234579999999986321 11
Q ss_pred HHHHHcccc----ccc---cCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 403 TEKVLRGVV----RVE---NIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 403 ~e~vL~gvv----~v~---~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
....+..+. -++ .+......+...+.....+.+...||+|... +..+.++.+....|.
T Consensus 77 ~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~ 142 (668)
T PRK12740 77 VERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGA 142 (668)
T ss_pred HHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
Confidence 222222211 111 1111112223344445667788999999763 455677888776553
No 494
>PTZ00416 elongation factor 2; Provisional
Probab=96.57 E-value=0.006 Score=71.73 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=52.4
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
..+.+.||||.++ +..++...+..+|.+|+|+||..........+.+.+.. .++|.|+++||+|
T Consensus 92 ~~i~liDtPG~~~--------------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--~~~p~iv~iNK~D 155 (836)
T PTZ00416 92 FLINLIDSPGHVD--------------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--ERIRPVLFINKVD 155 (836)
T ss_pred eEEEEEcCCCHHh--------------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--cCCCEEEEEEChh
Confidence 3567899999642 34567788899999999999998777666666666654 4689999999999
Q ss_pred CC
Q psy6781 286 LV 287 (534)
Q Consensus 286 Lv 287 (534)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 97
No 495
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.56 E-value=0.0055 Score=58.67 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=35.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeCc---cEEEEeCCCc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLMR---RIYLIDCPGV 392 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~~---~i~liDtPGi 392 (534)
..++|+++|.+|||||||++.+....-.. ..+..|.... ..+.++. .+.|+||+|-
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~ 63 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGS 63 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCc
Confidence 36789999999999999999998754211 1111121111 1122332 5889999996
No 496
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.50 E-value=0.0058 Score=63.67 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=72.8
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC-------------------------
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT------------------------- 259 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s------------------------- 259 (534)
..++-+.|.||+..... .++-.=+++..++.++|.|++|+|+..+...
T Consensus 109 ga~IQild~Pgii~gas-------~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~ 181 (365)
T COG1163 109 GAQIQLLDLPGIIEGAS-------SGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIK 181 (365)
T ss_pred CceEEEEcCcccccCcc-------cCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEE
Confidence 44666789999865332 2333345677889999999999999866321
Q ss_pred -----------------Cc-HHHHHHHHh-------------------------hCCCCcEEEEEeCCCCCChhhHHHHH
Q psy6781 260 -----------------RC-AHIENFLRR-------------------------EKPHKHLFFILNKVDLVPIWVTQRWV 296 (534)
Q Consensus 260 -----------------~~-~~le~~L~~-------------------------~~~~k~~IlVLNKiDLv~~~~~~~wl 296 (534)
.+ ..+..+|.+ ...-+|.|+|+||+|+...+.+....
T Consensus 182 kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~ 261 (365)
T COG1163 182 KKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLA 261 (365)
T ss_pred EeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHH
Confidence 11 111111111 11237899999999999865544443
Q ss_pred HHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 297 AILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 297 ~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+.+ ..+.+|+..+.|++.|.+.|-..+
T Consensus 262 ~~~------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 262 RKP------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred hcc------ceEEEecccCCCHHHHHHHHHHhh
Confidence 332 356678999999999988887654
No 497
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.49 E-value=0.0017 Score=70.14 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
+..++|+++|..++|||||+.+|.+.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCe
Confidence 46799999999999999999999763
No 498
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.46 E-value=0.0078 Score=58.61 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=42.8
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhc-CEEEEEEeCCCCCCCCcHHHH----HHHHh---hCCCCcEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSS-DVVVYVLDVRDPMGTRCAHIE----NFLRR---EKPHKHLF 278 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~ns-DvVL~VvDAR~Pl~s~~~~le----~~L~~---~~~~k~~I 278 (534)
...+.|+||... +...+...+.++ +.||+|+|+.+.... ...+. .++.. ..++.|++
T Consensus 49 ~~~l~D~pG~~~--------------~~~~~~~~~~~~~~~vV~VvD~~~~~~~-~~~~~~~l~~il~~~~~~~~~~pvl 113 (203)
T cd04105 49 KFRLVDVPGHPK--------------LRDKLLETLKNSAKGIVFVVDSATFQKN-LKDVAEFLYDILTDLEKVKNKIPVL 113 (203)
T ss_pred eEEEEECCCCHH--------------HHHHHHHHHhccCCEEEEEEECccchhH-HHHHHHHHHHHHHHHhhccCCCCEE
Confidence 356789999421 112334455676 999999999875321 12222 22221 12579999
Q ss_pred EEEeCCCCCChh
Q psy6781 279 FILNKVDLVPIW 290 (534)
Q Consensus 279 lVLNKiDLv~~~ 290 (534)
+|.||+||....
T Consensus 114 iv~NK~Dl~~a~ 125 (203)
T cd04105 114 IACNKQDLFTAK 125 (203)
T ss_pred EEecchhhcccC
Confidence 999999997543
No 499
>KOG0094|consensus
Probab=96.46 E-value=0.022 Score=55.59 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=61.4
Q ss_pred HHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH----HhhCC-CCcEEEEEeCCCCCChhhHHH-HHHHHhccCCeEEeee
Q psy6781 237 LYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL----RREKP-HKHLFFILNKVDLVPIWVTQR-WVAILSKEYPTIAFHA 310 (534)
Q Consensus 237 l~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L----~~~~~-~k~~IlVLNKiDLv~~~~~~~-wl~~l~~~~p~v~f~~ 310 (534)
+-..+.+++++|+|-|..+-.+.. ...+|| .+..+ +.-++||-||.||+++.+... --+...+++....+..
T Consensus 88 ipsY~Rds~vaviVyDit~~~Sfe--~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~et 165 (221)
T KOG0094|consen 88 IPSYIRDSSVAVIVYDITDRNSFE--NTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIET 165 (221)
T ss_pred hhhhccCCeEEEEEEeccccchHH--HHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEe
Confidence 445788999999999998765543 444554 33222 345667899999998753321 1112233455566778
Q ss_pred ccCCCCChHHHHHHHHHHhh
Q psy6781 311 SMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 311 Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|++.|+++..|...+...++
T Consensus 166 sak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred cccCCCCHHHHHHHHHHhcc
Confidence 99999999988887776554
No 500
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.46 E-value=0.014 Score=60.35 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=62.2
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
....+++||+|+.... ..++..+|.+++|.+ |... ..+..+... -..++.++|+||+
T Consensus 126 g~D~viidT~G~~~~e-----------------~~i~~~aD~i~vv~~---~~~~--~el~~~~~~-l~~~~~ivv~NK~ 182 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE-----------------VDIANMADTFVVVTI---PGTG--DDLQGIKAG-LMEIADIYVVNKA 182 (300)
T ss_pred CCCEEEEeCCCCchhh-----------------hHHHHhhceEEEEec---CCcc--HHHHHHHHH-HhhhccEEEEEcc
Confidence 4457899999964211 135678899998864 3322 234444321 1357889999999
Q ss_pred CCCChhhHHH-------HHHHHhcc---CCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 285 DLVPIWVTQR-------WVAILSKE---YPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 285 DLv~~~~~~~-------wl~~l~~~---~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|+.+...... -+..+... ....++.+|+.++.|++.|.+.|..+
T Consensus 183 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 183 DGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred cccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 9986542111 11112121 11235778999999999999988764
Done!