Query psy6781
Match_columns 534
No_of_seqs 511 out of 3506
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 18:14:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 2.9E-44 1E-48 364.2 25.6 257 229-492 9-279 (282)
2 3cnl_A YLQF, putative uncharac 100.0 3.2E-41 1.1E-45 338.5 13.6 245 223-493 3-248 (262)
3 1t9h_A YLOQ, probable GTPase E 99.9 5.6E-25 1.9E-29 225.5 4.8 200 154-396 17-238 (307)
4 2rcn_A Probable GTPase ENGC; Y 99.9 3.1E-24 1.1E-28 224.1 8.1 207 154-395 54-281 (358)
5 3h2y_A GTPase family protein; 99.9 8E-23 2.7E-27 214.2 11.1 150 237-396 63-225 (368)
6 3ec1_A YQEH GTPase; atnos1, at 99.9 4.4E-22 1.5E-26 208.6 14.3 150 237-396 65-226 (369)
7 1mky_A Probable GTP-binding pr 99.9 1.4E-20 4.8E-25 201.0 21.7 244 207-458 50-323 (439)
8 2hjg_A GTP-binding protein ENG 99.9 7.9E-22 2.7E-26 210.4 11.8 242 206-458 51-317 (436)
9 2yv5_A YJEQ protein; hydrolase 99.8 6E-21 2E-25 194.7 12.9 200 154-396 13-230 (302)
10 4dcu_A GTP-binding protein ENG 99.8 2.2E-20 7.4E-25 200.4 15.0 241 206-457 71-336 (456)
11 1u0l_A Probable GTPase ENGC; p 99.7 3.5E-17 1.2E-21 166.6 13.0 144 240-396 81-235 (301)
12 2e87_A Hypothetical protein PH 99.5 1.1E-15 3.7E-20 158.8 -3.4 151 245-396 59-228 (357)
13 1wf3_A GTP-binding protein; GT 99.1 1.2E-10 4E-15 118.6 7.0 111 337-447 7-133 (301)
14 4a9a_A Ribosome-interacting GT 99.1 8.7E-11 3E-15 123.4 5.3 60 337-397 72-134 (376)
15 3iev_A GTP-binding protein ERA 99.1 7.7E-10 2.6E-14 112.6 12.2 121 205-331 58-182 (308)
16 3iev_A GTP-binding protein ERA 99.0 7.6E-11 2.6E-15 120.0 4.5 147 336-483 9-183 (308)
17 1ega_A Protein (GTP-binding pr 99.0 3.2E-10 1.1E-14 115.1 8.4 123 337-460 8-148 (301)
18 4dhe_A Probable GTP-binding pr 99.0 2.8E-10 9.6E-15 108.1 6.5 110 336-445 28-158 (223)
19 1svi_A GTP-binding protein YSX 99.0 6.3E-10 2.2E-14 103.1 7.8 110 336-445 22-148 (195)
20 1wf3_A GTP-binding protein; GT 99.0 1.6E-09 5.5E-14 110.2 10.9 119 204-330 53-172 (301)
21 1mky_A Probable GTP-binding pr 99.0 2.7E-10 9.2E-15 121.4 4.5 106 339-444 3-123 (439)
22 2cxx_A Probable GTP-binding pr 98.9 3.3E-09 1.1E-13 97.4 10.9 121 338-460 2-151 (190)
23 3lxw_A GTPase IMAP family memb 98.9 1.5E-09 5E-14 106.9 9.0 61 336-396 20-84 (247)
24 3pqc_A Probable GTP-binding pr 98.9 1.7E-09 5.8E-14 99.6 8.0 110 336-445 22-147 (195)
25 3gee_A MNME, tRNA modification 98.9 9.7E-10 3.3E-14 118.8 5.8 62 335-396 231-295 (476)
26 4dhe_A Probable GTP-binding pr 98.9 2.2E-08 7.6E-13 94.9 13.3 124 205-331 78-211 (223)
27 2hjg_A GTP-binding protein ENG 98.9 4.7E-10 1.6E-14 119.4 1.8 108 338-445 4-125 (436)
28 1x3s_A RAS-related protein RAB 98.8 7.8E-09 2.7E-13 95.3 9.1 125 207-352 65-194 (195)
29 3i8s_A Ferrous iron transport 98.8 1.9E-09 6.5E-14 107.8 5.1 59 337-396 3-64 (274)
30 4dcu_A GTP-binding protein ENG 98.8 1E-09 3.5E-14 117.4 2.4 108 337-444 23-144 (456)
31 3iby_A Ferrous iron transport 98.8 5E-09 1.7E-13 104.0 6.6 121 339-460 3-141 (256)
32 3def_A T7I23.11 protein; chlor 98.8 4.4E-08 1.5E-12 96.8 13.1 61 336-396 35-98 (262)
33 2qtf_A Protein HFLX, GTP-bindi 98.8 4.2E-10 1.4E-14 117.6 -2.0 147 228-394 69-238 (364)
34 3pqc_A Probable GTP-binding pr 98.8 4.4E-08 1.5E-12 90.1 11.7 121 207-330 69-193 (195)
35 1svi_A GTP-binding protein YSX 98.8 8.3E-08 2.8E-12 88.7 13.3 120 207-329 70-193 (195)
36 3t5d_A Septin-7; GTP-binding p 98.8 3.7E-08 1.3E-12 98.1 11.6 59 336-394 7-77 (274)
37 3lxx_A GTPase IMAP family memb 98.7 2.7E-08 9.1E-13 96.5 10.1 60 336-396 28-92 (239)
38 2xtp_A GTPase IMAP family memb 98.7 8.9E-09 3E-13 101.0 6.8 61 336-396 21-85 (260)
39 1xzp_A Probable tRNA modificat 98.7 2.1E-09 7E-14 116.4 2.3 61 336-396 242-306 (482)
40 2dyk_A GTP-binding protein; GT 98.7 6.3E-09 2.2E-13 92.8 3.4 107 338-445 2-122 (161)
41 3k53_A Ferrous iron transport 98.7 2.5E-08 8.5E-13 99.0 7.9 59 337-396 3-64 (271)
42 3geh_A MNME, tRNA modification 98.7 3.4E-09 1.2E-13 114.1 1.7 60 336-395 223-285 (462)
43 2gj8_A MNME, tRNA modification 98.7 2.2E-08 7.5E-13 92.1 6.9 60 336-395 3-65 (172)
44 1jwy_B Dynamin A GTPase domain 98.7 1.8E-08 6.2E-13 101.3 6.5 34 336-369 23-61 (315)
45 3a1s_A Iron(II) transport prot 98.7 2.9E-08 9.9E-13 98.5 7.7 60 336-396 4-66 (258)
46 1ega_A Protein (GTP-binding pr 98.7 1.9E-08 6.4E-13 102.1 6.4 117 205-330 55-174 (301)
47 1h65_A Chloroplast outer envel 98.6 5.7E-08 2E-12 96.3 8.8 61 336-396 38-101 (270)
48 1pui_A ENGB, probable GTP-bind 98.6 3.6E-08 1.2E-12 92.6 5.9 59 336-394 25-84 (210)
49 3q72_A GTP-binding protein RAD 98.6 1.6E-07 5.3E-12 84.2 9.9 119 337-459 2-137 (166)
50 1wxq_A GTP-binding protein; st 98.6 1.6E-08 5.5E-13 106.8 3.8 57 338-395 1-84 (397)
51 2ged_A SR-beta, signal recogni 98.6 6E-08 2.1E-12 89.7 6.9 141 316-460 24-187 (193)
52 3b1v_A Ferrous iron uptake tra 98.6 6.1E-08 2.1E-12 97.1 7.0 58 337-395 3-62 (272)
53 1lnz_A SPO0B-associated GTP-bi 98.6 6.8E-08 2.3E-12 100.1 7.4 119 339-459 160-301 (342)
54 2qpt_A EH domain-containing pr 98.5 5.9E-08 2E-12 106.6 6.4 39 336-374 64-104 (550)
55 2nzj_A GTP-binding protein REM 98.5 1.2E-07 4.2E-12 85.5 7.4 59 336-394 3-64 (175)
56 2j69_A Bacterial dynamin-like 98.5 8.1E-08 2.8E-12 108.3 7.4 36 336-371 68-103 (695)
57 2gj8_A MNME, tRNA modification 98.5 3.4E-07 1.2E-11 84.1 10.2 112 207-330 53-165 (172)
58 2dyk_A GTP-binding protein; GT 98.5 1.8E-07 6.1E-12 83.2 7.7 111 206-328 49-159 (161)
59 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 5.5E-08 1.9E-12 102.6 4.5 61 336-396 19-99 (392)
60 1upt_A ARL1, ADP-ribosylation 98.5 7.2E-08 2.5E-12 86.7 4.7 58 336-394 6-63 (171)
61 2ohf_A Protein OLA1, GTP-bindi 98.5 4.4E-08 1.5E-12 103.5 3.5 60 336-396 21-100 (396)
62 1jal_A YCHF protein; nucleotid 98.5 4.1E-08 1.4E-12 102.6 3.2 58 337-395 2-79 (363)
63 1zj6_A ADP-ribosylation factor 98.5 8.4E-07 2.9E-11 81.7 11.6 115 335-454 14-142 (187)
64 3qq5_A Small GTP-binding prote 98.5 1.4E-07 4.9E-12 100.4 7.1 124 336-459 33-169 (423)
65 1f5n_A Interferon-induced guan 98.5 1.5E-07 5E-12 104.2 7.4 62 335-396 36-105 (592)
66 3r7w_A Gtpase1, GTP-binding pr 98.5 2E-07 6.8E-12 94.6 7.4 124 336-459 2-152 (307)
67 2wji_A Ferrous iron transport 98.5 1.5E-07 5.2E-12 85.4 5.8 58 337-395 3-63 (165)
68 4dsu_A GTPase KRAS, isoform 2B 98.5 7.1E-07 2.4E-11 81.4 10.3 118 336-459 3-139 (189)
69 2qu8_A Putative nucleolar GTP- 98.4 1.9E-07 6.5E-12 89.6 6.6 59 336-395 28-89 (228)
70 2wjg_A FEOB, ferrous iron tran 98.4 2.4E-07 8.3E-12 85.0 6.9 59 336-395 6-67 (188)
71 2aka_B Dynamin-1; fusion prote 98.4 2.4E-07 8.2E-12 92.1 7.2 35 336-370 25-64 (299)
72 3t5g_A GTP-binding protein RHE 98.4 1.2E-06 4.1E-11 79.8 11.4 145 336-482 5-169 (181)
73 3cph_A RAS-related protein SEC 98.4 1E-06 3.5E-11 82.5 11.0 119 336-459 19-155 (213)
74 3cb4_D GTP-binding protein LEP 98.4 5.7E-07 2E-11 99.7 10.7 137 207-360 72-216 (599)
75 2qu8_A Putative nucleolar GTP- 98.4 1.3E-06 4.6E-11 83.6 11.9 120 206-330 76-204 (228)
76 2fg5_A RAB-22B, RAS-related pr 98.4 4.8E-07 1.6E-11 84.0 8.5 58 336-393 22-83 (192)
77 1ek0_A Protein (GTP-binding pr 98.4 6.5E-07 2.2E-11 80.0 9.0 57 337-393 3-63 (170)
78 4djt_A GTP-binding nuclear pro 98.4 2E-06 6.8E-11 81.1 12.6 149 336-488 10-181 (218)
79 1z2a_A RAS-related protein RAB 98.4 8.3E-07 2.8E-11 79.2 9.3 59 336-394 4-66 (168)
80 3sjy_A Translation initiation 98.4 1E-06 3.5E-11 92.6 11.5 124 206-344 75-207 (403)
81 2h17_A ADP-ribosylation factor 98.4 2.5E-07 8.5E-12 85.0 5.8 58 336-394 20-77 (181)
82 4bas_A ADP-ribosylation factor 98.4 1.3E-06 4.3E-11 80.7 10.5 111 205-331 62-189 (199)
83 1upt_A ARL1, ADP-ribosylation 98.4 8.9E-07 3E-11 79.5 9.1 112 205-330 50-168 (171)
84 1r8s_A ADP-ribosylation factor 98.4 8E-07 2.7E-11 79.4 8.7 108 206-329 44-160 (164)
85 3clv_A RAB5 protein, putative; 98.4 1.8E-06 6.3E-11 79.1 11.4 27 336-362 6-32 (208)
86 3t5g_A GTP-binding protein RHE 98.4 3.3E-07 1.1E-11 83.6 6.2 120 207-352 55-180 (181)
87 3cph_A RAS-related protein SEC 98.4 6.6E-07 2.2E-11 83.8 8.3 109 207-331 70-182 (213)
88 1xzp_A Probable tRNA modificat 98.4 6E-07 2.1E-11 97.1 8.9 110 207-328 292-402 (482)
89 3gee_A MNME, tRNA modification 98.4 5.5E-07 1.9E-11 97.3 8.6 114 206-329 281-396 (476)
90 2ce2_X GTPase HRAS; signaling 98.4 2.4E-06 8.2E-11 75.6 11.4 117 337-459 3-138 (166)
91 2lkc_A Translation initiation 98.4 6E-07 2E-11 81.3 7.4 59 335-394 6-67 (178)
92 1zd9_A ADP-ribosylation factor 98.4 1.2E-06 4.2E-11 81.0 9.6 108 206-329 67-183 (188)
93 3tkl_A RAS-related protein RAB 98.4 1.8E-06 6.3E-11 79.4 10.8 142 336-482 15-179 (196)
94 1zj6_A ADP-ribosylation factor 98.4 9.3E-07 3.2E-11 81.4 8.6 109 206-330 60-177 (187)
95 3tkl_A RAS-related protein RAB 98.4 9E-07 3.1E-11 81.6 8.5 110 207-332 66-180 (196)
96 2x77_A ADP-ribosylation factor 98.4 9.5E-07 3.3E-11 81.4 8.6 59 335-394 20-78 (189)
97 2x77_A ADP-ribosylation factor 98.4 1.1E-06 3.6E-11 81.0 8.9 112 205-330 65-183 (189)
98 2f7s_A C25KG, RAS-related prot 98.3 1.1E-06 3.9E-11 82.8 9.3 107 207-329 85-197 (217)
99 2ce2_X GTPase HRAS; signaling 98.3 1.1E-06 3.8E-11 77.8 8.5 107 207-329 52-163 (166)
100 1g16_A RAS-related protein SEC 98.3 1E-06 3.5E-11 78.8 8.4 108 207-330 53-164 (170)
101 2gf9_A RAS-related protein RAB 98.3 4.4E-07 1.5E-11 83.8 6.0 59 336-394 21-83 (189)
102 2x2e_A Dynamin-1; nitration, h 98.3 5.3E-07 1.8E-11 93.1 7.3 35 336-370 30-69 (353)
103 4bas_A ADP-ribosylation factor 98.3 1.6E-06 5.4E-11 80.1 9.8 59 335-394 15-75 (199)
104 1moz_A ARL1, ADP-ribosylation 98.3 8.6E-07 2.9E-11 80.8 7.9 59 335-394 16-74 (183)
105 3gj0_A GTP-binding nuclear pro 98.3 7.1E-07 2.4E-11 84.7 7.6 153 336-493 14-186 (221)
106 2efe_B Small GTP-binding prote 98.3 2.2E-06 7.4E-11 77.8 10.5 120 336-459 11-148 (181)
107 1ksh_A ARF-like protein 2; sma 98.3 9.1E-07 3.1E-11 81.1 8.0 112 205-330 61-179 (186)
108 2dby_A GTP-binding protein; GD 98.3 1.5E-07 5.2E-12 98.5 3.0 58 338-396 2-83 (368)
109 1g16_A RAS-related protein SEC 98.3 2.2E-06 7.4E-11 76.6 10.2 118 337-459 3-138 (170)
110 1z0j_A RAB-22, RAS-related pro 98.3 4.9E-07 1.7E-11 80.9 5.7 58 336-393 5-66 (170)
111 3q85_A GTP-binding protein REM 98.3 7.3E-06 2.5E-10 73.4 13.5 124 337-460 2-141 (169)
112 3t1o_A Gliding protein MGLA; G 98.3 2.1E-06 7.1E-11 78.7 10.0 109 207-330 75-191 (198)
113 3zvr_A Dynamin-1; hydrolase, D 98.3 1E-06 3.6E-11 99.9 9.5 56 311-366 19-80 (772)
114 1f6b_A SAR1; gtpases, N-termin 98.3 1.8E-06 6E-11 81.1 9.5 57 336-394 24-81 (198)
115 2oil_A CATX-8, RAS-related pro 98.3 1.5E-06 5.2E-11 80.2 8.8 120 336-459 24-161 (193)
116 2h57_A ADP-ribosylation factor 98.3 1.9E-06 6.6E-11 79.5 9.5 110 206-329 67-185 (190)
117 1r2q_A RAS-related protein RAB 98.3 1E-06 3.5E-11 78.6 7.3 107 207-329 56-167 (170)
118 1c1y_A RAS-related protein RAP 98.3 1.9E-06 6.5E-11 76.8 9.1 102 337-444 3-121 (167)
119 1kao_A RAP2A; GTP-binding prot 98.3 9.3E-07 3.2E-11 78.5 7.0 117 337-459 3-139 (167)
120 2a5j_A RAS-related protein RAB 98.3 5.3E-06 1.8E-10 76.7 12.4 121 336-460 20-158 (191)
121 3kkq_A RAS-related protein M-R 98.3 2.8E-06 9.7E-11 77.4 10.2 119 335-459 16-154 (183)
122 2h57_A ADP-ribosylation factor 98.3 8.3E-07 2.8E-11 82.0 6.5 56 336-393 20-78 (190)
123 2efe_B Small GTP-binding prote 98.3 1.7E-06 5.8E-11 78.5 8.4 108 207-330 62-174 (181)
124 2b6h_A ADP-ribosylation factor 98.3 1.6E-06 5.6E-11 80.8 8.5 108 206-329 73-189 (192)
125 1c1y_A RAS-related protein RAP 98.3 2.7E-06 9.4E-11 75.7 9.6 108 207-328 52-164 (167)
126 1fzq_A ADP-ribosylation factor 98.3 7.3E-07 2.5E-11 82.2 5.9 58 335-393 14-71 (181)
127 1ek0_A Protein (GTP-binding pr 98.3 7.4E-07 2.5E-11 79.6 5.7 106 207-328 53-166 (170)
128 3clv_A RAB5 protein, putative; 98.3 2.3E-06 7.7E-11 78.4 9.2 107 206-329 93-202 (208)
129 1z0j_A RAB-22, RAS-related pro 98.3 1.4E-06 4.9E-11 77.9 7.4 108 206-329 55-167 (170)
130 1wb1_A Translation elongation 98.3 3.7E-06 1.3E-10 90.8 12.0 111 205-331 72-189 (482)
131 2fv8_A H6, RHO-related GTP-bin 98.3 6.1E-06 2.1E-10 77.5 12.1 58 336-394 24-85 (207)
132 2b6h_A ADP-ribosylation factor 98.3 3.7E-06 1.3E-10 78.4 10.5 105 335-445 27-144 (192)
133 3oes_A GTPase rhebl1; small GT 98.3 1.7E-06 5.9E-11 80.8 8.0 141 336-482 23-187 (201)
134 3bc1_A RAS-related protein RAB 98.3 9.7E-07 3.3E-11 80.6 6.2 108 207-330 71-184 (195)
135 1z0f_A RAB14, member RAS oncog 98.3 1.9E-06 6.4E-11 77.8 7.9 106 207-328 65-175 (179)
136 4dsu_A GTPase KRAS, isoform 2B 98.2 2.3E-06 8E-11 77.9 8.6 107 208-330 54-165 (189)
137 1moz_A ARL1, ADP-ribosylation 98.2 4.9E-06 1.7E-10 75.7 10.5 109 206-330 62-179 (183)
138 2y8e_A RAB-protein 6, GH09086P 98.2 1.3E-06 4.5E-11 78.8 6.5 106 207-329 64-175 (179)
139 1jwy_B Dynamin A GTPase domain 98.2 3.1E-06 1E-10 84.9 9.8 124 205-331 130-262 (315)
140 1ksh_A ARF-like protein 2; sma 98.2 1.1E-06 3.9E-11 80.5 6.2 58 335-393 16-73 (186)
141 1u8z_A RAS-related protein RAL 98.2 1.7E-06 5.9E-11 76.8 7.0 56 336-393 3-63 (168)
142 2h17_A ADP-ribosylation factor 98.2 5.3E-06 1.8E-10 76.1 10.4 106 206-327 65-179 (181)
143 1wms_A RAB-9, RAB9, RAS-relate 98.2 1.4E-06 4.9E-11 78.7 6.4 58 336-393 6-67 (177)
144 1z0f_A RAB14, member RAS oncog 98.2 1.6E-06 5.4E-11 78.2 6.6 58 336-393 14-75 (179)
145 2fn4_A P23, RAS-related protei 98.2 4.7E-06 1.6E-10 75.2 9.8 118 336-459 8-145 (181)
146 2oil_A CATX-8, RAS-related pro 98.2 3.3E-06 1.1E-10 78.0 8.8 107 207-329 75-186 (193)
147 2g6b_A RAS-related protein RAB 98.2 1.5E-06 5.1E-11 78.8 6.2 108 207-330 61-173 (180)
148 2g6b_A RAS-related protein RAB 98.2 1.9E-06 6.6E-11 78.1 7.0 58 336-393 9-71 (180)
149 3geh_A MNME, tRNA modification 98.2 1.3E-06 4.4E-11 94.0 6.7 110 206-329 272-382 (462)
150 3tw8_B RAS-related protein RAB 98.2 1.6E-06 5.4E-11 78.4 6.2 58 336-394 8-70 (181)
151 2fn4_A P23, RAS-related protei 98.2 4.4E-06 1.5E-10 75.4 9.1 110 207-330 58-171 (181)
152 1fzq_A ADP-ribosylation factor 98.2 3.2E-06 1.1E-10 77.9 8.3 108 206-329 60-176 (181)
153 1z2a_A RAS-related protein RAB 98.2 1.6E-06 5.3E-11 77.4 5.9 109 207-329 55-165 (168)
154 3mca_A HBS1, elongation factor 98.2 4.9E-07 1.7E-11 100.2 3.1 112 334-445 174-329 (592)
155 1u8z_A RAS-related protein RAL 98.2 2.4E-06 8.4E-11 75.8 7.1 106 207-329 53-165 (168)
156 3j2k_7 ERF3, eukaryotic polype 98.2 1.3E-06 4.3E-11 93.3 6.1 59 335-393 15-106 (439)
157 2lkc_A Translation initiation 98.2 4.8E-06 1.7E-10 75.2 9.1 109 206-330 55-170 (178)
158 1r2q_A RAS-related protein RAB 98.2 2.1E-06 7.1E-11 76.6 6.6 58 336-393 5-66 (170)
159 3con_A GTPase NRAS; structural 98.2 2.2E-06 7.6E-11 78.8 6.9 108 207-330 70-182 (190)
160 2gf0_A GTP-binding protein DI- 98.2 1.7E-06 5.8E-11 79.9 6.2 110 207-330 57-170 (199)
161 1vg8_A RAS-related protein RAB 98.2 3E-06 1E-10 78.9 7.6 110 207-330 58-174 (207)
162 3reg_A RHO-like small GTPase; 98.2 1.5E-06 5.2E-11 80.4 5.6 109 208-330 73-187 (194)
163 4djt_A GTP-binding nuclear pro 98.2 5.3E-06 1.8E-10 78.2 9.5 108 207-330 62-174 (218)
164 2www_A Methylmalonic aciduria 98.2 6.3E-07 2.1E-11 92.8 3.2 24 336-359 73-96 (349)
165 1mh1_A RAC1; GTP-binding, GTPa 98.2 2.7E-06 9.1E-11 77.4 7.0 110 207-330 54-179 (186)
166 2il1_A RAB12; G-protein, GDP, 98.2 2.9E-06 1E-10 78.8 7.5 109 207-329 76-188 (192)
167 3tw8_B RAS-related protein RAB 98.2 1.8E-06 6E-11 78.1 5.7 108 207-330 59-170 (181)
168 2hup_A RAS-related protein RAB 98.2 4.2E-06 1.4E-10 78.5 8.4 108 207-330 79-192 (201)
169 3qq5_A Small GTP-binding prote 98.2 1.5E-06 5E-11 92.6 5.9 112 207-330 84-195 (423)
170 2erx_A GTP-binding protein DI- 98.2 2.7E-06 9.2E-11 76.0 6.8 110 207-330 52-166 (172)
171 1kk1_A EIF2gamma; initiation o 98.2 9E-06 3.1E-10 85.6 11.9 111 206-331 83-200 (410)
172 2q3h_A RAS homolog gene family 98.2 2.9E-06 1E-10 78.8 7.3 109 208-330 70-194 (201)
173 2gf9_A RAS-related protein RAB 98.2 4.8E-06 1.6E-10 76.7 8.7 108 207-330 72-184 (189)
174 2j1l_A RHO-related GTP-binding 98.2 3.2E-06 1.1E-10 80.1 7.6 110 207-330 83-208 (214)
175 2cxx_A Probable GTP-binding pr 98.2 2.2E-05 7.6E-10 71.6 13.1 122 207-331 45-184 (190)
176 3zvr_A Dynamin-1; hydrolase, D 98.2 4E-06 1.4E-10 95.2 9.6 117 206-327 150-274 (772)
177 3bwd_D RAC-like GTP-binding pr 98.2 2.3E-06 7.8E-11 77.7 6.3 107 208-328 58-178 (182)
178 3j2k_7 ERF3, eukaryotic polype 98.2 9.9E-06 3.4E-10 86.4 12.2 102 204-321 93-215 (439)
179 2p5s_A RAS and EF-hand domain 98.2 2E-06 6.7E-11 80.3 6.0 58 336-393 27-88 (199)
180 2fg5_A RAB-22B, RAS-related pr 98.1 3.1E-06 1.1E-10 78.5 7.3 108 207-330 73-185 (192)
181 2a9k_A RAS-related protein RAL 98.1 4.1E-06 1.4E-10 76.0 7.9 107 207-330 67-180 (187)
182 1m2o_B GTP-binding protein SAR 98.1 2.4E-06 8E-11 79.5 6.4 58 336-394 22-79 (190)
183 3iby_A Ferrous iron transport 98.1 7.1E-07 2.4E-11 88.4 2.9 116 206-327 48-163 (256)
184 2gco_A H9, RHO-related GTP-bin 98.1 6.4E-06 2.2E-10 77.0 9.2 57 336-393 24-84 (201)
185 2a5j_A RAS-related protein RAB 98.1 5.5E-06 1.9E-10 76.6 8.7 107 207-329 71-182 (191)
186 1z06_A RAS-related protein RAB 98.1 3.2E-06 1.1E-10 77.9 6.9 121 336-459 19-158 (189)
187 2erx_A GTP-binding protein DI- 98.1 4.5E-06 1.5E-10 74.5 7.7 57 336-393 2-62 (172)
188 2bme_A RAB4A, RAS-related prot 98.1 2.4E-06 8.1E-11 78.0 5.9 107 207-330 60-172 (186)
189 3kkq_A RAS-related protein M-R 98.1 3.5E-06 1.2E-10 76.8 7.1 90 240-329 86-180 (183)
190 1wms_A RAB-9, RAB9, RAS-relate 98.1 5.3E-06 1.8E-10 74.9 8.1 109 207-329 57-172 (177)
191 2fv8_A H6, RHO-related GTP-bin 98.1 5.6E-06 1.9E-10 77.8 8.5 109 207-329 74-198 (207)
192 3tr5_A RF-3, peptide chain rel 98.1 5.8E-07 2E-11 98.2 1.9 121 336-460 12-164 (528)
193 1z08_A RAS-related protein RAB 98.1 4.5E-06 1.5E-10 74.7 7.5 57 336-393 5-66 (170)
194 2a9k_A RAS-related protein RAL 98.1 3.7E-06 1.3E-10 76.3 7.0 56 336-393 17-77 (187)
195 1nrj_B SR-beta, signal recogni 98.1 3.2E-06 1.1E-10 79.8 6.7 57 335-395 10-68 (218)
196 2yc2_C IFT27, small RAB-relate 98.1 2.7E-06 9.4E-11 78.9 6.2 108 206-329 73-190 (208)
197 3dz8_A RAS-related protein RAB 98.1 3.6E-06 1.2E-10 77.9 6.9 94 237-330 89-185 (191)
198 1r8s_A ADP-ribosylation factor 98.1 2.2E-06 7.5E-11 76.5 5.3 54 338-393 1-55 (164)
199 1z06_A RAS-related protein RAB 98.1 3.7E-06 1.3E-10 77.5 7.0 108 207-327 70-184 (189)
200 1zbd_A Rabphilin-3A; G protein 98.1 3.8E-06 1.3E-10 78.2 7.1 121 336-460 7-145 (203)
201 2iwr_A Centaurin gamma 1; ANK 98.1 2.8E-06 9.4E-11 77.2 5.9 58 336-394 6-66 (178)
202 3izq_1 HBS1P, elongation facto 98.1 1.1E-06 3.6E-11 97.8 3.7 59 335-393 165-256 (611)
203 3c5c_A RAS-like protein 12; GD 98.1 8.4E-06 2.9E-10 75.4 9.3 117 336-459 20-158 (187)
204 1x3s_A RAS-related protein RAB 98.1 2.9E-06 9.9E-11 77.9 6.0 143 336-482 14-178 (195)
205 2atx_A Small GTP binding prote 98.1 4.6E-06 1.6E-10 77.0 7.4 108 207-328 67-190 (194)
206 2hxs_A RAB-26, RAS-related pro 98.1 3.6E-06 1.2E-10 76.1 6.4 108 206-329 56-171 (178)
207 2il1_A RAB12; G-protein, GDP, 98.1 3.6E-06 1.2E-10 78.1 6.5 58 336-393 25-86 (192)
208 3p32_A Probable GTPase RV1496/ 98.1 3.1E-06 1.1E-10 87.5 6.6 104 204-330 170-283 (355)
209 2bcg_Y Protein YP2, GTP-bindin 98.1 7.4E-06 2.5E-10 76.5 8.6 108 207-330 58-170 (206)
210 3t1o_A Gliding protein MGLA; G 98.1 1.8E-05 6E-10 72.5 10.9 121 336-460 13-165 (198)
211 3con_A GTPase NRAS; structural 98.1 4.2E-06 1.4E-10 76.9 6.8 56 336-393 20-80 (190)
212 2y8e_A RAB-protein 6, GH09086P 98.1 4.7E-06 1.6E-10 75.1 7.0 58 336-394 13-75 (179)
213 3i8s_A Ferrous iron transport 98.1 5.8E-07 2E-11 89.7 1.0 119 205-329 49-167 (274)
214 2nzj_A GTP-binding protein REM 98.1 5.2E-06 1.8E-10 74.7 7.2 110 207-330 53-168 (175)
215 3q85_A GTP-binding protein REM 98.1 7.5E-06 2.6E-10 73.3 8.2 110 207-329 52-165 (169)
216 3q72_A GTP-binding protein RAD 98.1 7.2E-06 2.5E-10 73.2 8.1 107 207-329 50-162 (166)
217 1f6b_A SAR1; gtpases, N-termin 98.1 7.3E-06 2.5E-10 76.8 8.4 108 206-327 69-195 (198)
218 1m2o_B GTP-binding protein SAR 98.1 6.7E-06 2.3E-10 76.4 8.1 108 206-327 67-188 (190)
219 2bov_A RAla, RAS-related prote 98.1 4.3E-06 1.5E-10 77.6 6.7 139 336-481 13-176 (206)
220 2p5s_A RAS and EF-hand domain 98.1 3.1E-06 1.1E-10 79.0 5.7 107 207-329 78-195 (199)
221 2fu5_C RAS-related protein RAB 98.1 2.7E-06 9.1E-11 77.6 5.1 105 206-330 57-170 (183)
222 2j0v_A RAC-like GTP-binding pr 98.1 1.5E-05 5.2E-10 74.7 10.5 57 336-394 8-69 (212)
223 1s0u_A EIF-2-gamma, translatio 98.1 9.9E-06 3.4E-10 85.3 10.2 110 206-331 81-198 (408)
224 3tr5_A RF-3, peptide chain rel 98.1 9.5E-06 3.2E-10 88.7 10.3 69 205-289 81-149 (528)
225 2gco_A H9, RHO-related GTP-bin 98.1 7.3E-06 2.5E-10 76.6 8.2 108 207-328 74-197 (201)
226 3reg_A RHO-like small GTPase; 98.1 5.4E-06 1.9E-10 76.7 7.2 142 335-482 21-188 (194)
227 3cbq_A GTP-binding protein REM 98.1 6.4E-06 2.2E-10 77.1 7.8 142 336-481 22-187 (195)
228 1vg8_A RAS-related protein RAB 98.1 3.8E-06 1.3E-10 78.1 6.2 58 336-394 7-69 (207)
229 2wji_A Ferrous iron transport 98.1 2.9E-06 1E-10 76.9 5.2 108 207-328 51-162 (165)
230 3a1s_A Iron(II) transport prot 98.1 3.9E-06 1.3E-10 83.1 6.5 115 206-330 52-166 (258)
231 1zbd_A Rabphilin-3A; G protein 98.1 4E-06 1.4E-10 78.0 6.2 108 207-330 58-170 (203)
232 4gzl_A RAS-related C3 botulinu 98.1 4.1E-06 1.4E-10 78.8 6.3 107 207-327 79-201 (204)
233 1kao_A RAP2A; GTP-binding prot 98.1 3.3E-06 1.1E-10 74.9 5.4 109 207-329 52-164 (167)
234 1ky3_A GTP-binding protein YPT 98.1 7.6E-06 2.6E-10 73.9 7.9 109 207-329 59-176 (182)
235 1ky3_A GTP-binding protein YPT 98.1 2.9E-06 9.8E-11 76.7 5.0 58 336-393 7-69 (182)
236 2j0v_A RAC-like GTP-binding pr 98.1 3.1E-06 1E-10 79.5 5.2 110 207-330 58-179 (212)
237 2e87_A Hypothetical protein PH 98.1 2E-05 6.8E-10 81.4 11.8 118 207-330 215-335 (357)
238 2bme_A RAB4A, RAS-related prot 98.1 4.2E-06 1.4E-10 76.3 5.9 57 336-393 9-70 (186)
239 3o47_A ADP-ribosylation factor 98.0 6.4E-06 2.2E-10 84.4 7.8 110 206-329 209-325 (329)
240 3llu_A RAS-related GTP-binding 98.0 2.3E-05 7.8E-10 72.9 11.0 110 206-327 69-193 (196)
241 1lnz_A SPO0B-associated GTP-bi 98.0 1.6E-06 5.3E-11 89.9 3.1 117 206-331 206-330 (342)
242 1zd9_A ADP-ribosylation factor 98.0 3.9E-06 1.3E-10 77.6 5.5 106 335-445 20-138 (188)
243 2atv_A RERG, RAS-like estrogen 98.0 6.9E-06 2.3E-10 76.3 7.1 58 336-394 27-88 (196)
244 2fh5_B SR-beta, signal recogni 98.0 4.7E-06 1.6E-10 78.3 6.0 56 336-393 6-65 (214)
245 2o52_A RAS-related protein RAB 98.0 6.4E-06 2.2E-10 77.1 6.9 107 206-329 74-186 (200)
246 2gf0_A GTP-binding protein DI- 98.0 7E-06 2.4E-10 75.7 7.0 141 336-481 7-170 (199)
247 3l0i_B RAS-related protein RAB 98.0 3E-06 1E-10 79.1 4.4 57 336-393 32-93 (199)
248 3p26_A Elongation factor 1 alp 98.0 3.5E-06 1.2E-10 90.8 5.6 60 334-393 30-122 (483)
249 2xtp_A GTPase IMAP family memb 98.0 3.5E-06 1.2E-10 82.4 5.1 121 205-330 70-207 (260)
250 2bov_A RAla, RAS-related prote 98.0 7.9E-06 2.7E-10 75.8 7.3 107 207-330 63-176 (206)
251 2aka_B Dynamin-1; fusion prote 98.0 1.1E-05 3.8E-10 80.0 8.8 120 206-328 125-250 (299)
252 2atv_A RERG, RAS-like estrogen 98.0 1.2E-05 4.1E-10 74.6 8.5 108 207-329 77-189 (196)
253 2atx_A Small GTP binding prote 98.0 3.1E-05 1.1E-09 71.4 11.3 57 336-394 17-78 (194)
254 3p26_A Elongation factor 1 alp 98.0 1.1E-05 3.8E-10 86.9 9.4 105 201-319 106-226 (483)
255 2bcg_Y Protein YP2, GTP-bindin 98.0 6.2E-06 2.1E-10 77.0 6.5 58 336-394 7-69 (206)
256 2o52_A RAS-related protein RAB 98.0 6.4E-06 2.2E-10 77.1 6.6 57 336-393 24-85 (200)
257 3o47_A ADP-ribosylation factor 98.0 1.1E-05 3.9E-10 82.5 9.0 111 336-454 164-291 (329)
258 1udx_A The GTP-binding protein 98.0 1.2E-05 4.1E-10 85.4 9.4 56 338-394 158-217 (416)
259 1z08_A RAS-related protein RAB 98.0 2.9E-06 1E-10 75.9 3.9 107 207-329 56-167 (170)
260 3bc1_A RAS-related protein RAB 98.0 6.3E-06 2.2E-10 75.1 6.2 58 336-393 10-81 (195)
261 2cjw_A GTP-binding protein GEM 98.0 1.3E-05 4.3E-10 74.9 8.3 59 336-394 5-68 (192)
262 2hxs_A RAB-26, RAS-related pro 98.0 4.3E-06 1.5E-10 75.6 5.0 59 336-394 5-68 (178)
263 3t5d_A Septin-7; GTP-binding p 98.0 1.7E-05 5.9E-10 78.6 9.6 120 207-330 66-203 (274)
264 2iwr_A Centaurin gamma 1; ANK 98.0 3.1E-05 1.1E-09 70.1 10.5 85 240-329 69-167 (178)
265 3k53_A Ferrous iron transport 98.0 3.5E-06 1.2E-10 83.5 4.4 114 206-329 50-164 (271)
266 3dpu_A RAB family protein; roc 98.0 2.5E-05 8.6E-10 85.0 11.5 125 316-445 14-164 (535)
267 2ywe_A GTP-binding protein LEP 98.0 1.7E-05 5.8E-10 87.9 10.2 109 207-332 74-185 (600)
268 2c78_A Elongation factor TU-A; 98.0 6.9E-06 2.3E-10 86.3 6.7 114 201-330 70-211 (405)
269 3lvq_E ARF-GAP with SH3 domain 98.0 6.5E-06 2.2E-10 88.4 6.6 57 336-394 321-378 (497)
270 2fh5_B SR-beta, signal recogni 98.0 3.7E-05 1.3E-09 72.2 10.8 108 206-327 54-212 (214)
271 2ew1_A RAS-related protein RAB 98.0 4.8E-06 1.6E-10 78.7 4.7 108 207-330 76-188 (201)
272 2j1l_A RHO-related GTP-binding 98.0 1.2E-05 4E-10 76.2 7.4 56 336-393 33-93 (214)
273 3cpj_B GTP-binding protein YPT 98.0 8.9E-06 3E-10 77.4 6.5 109 207-331 63-176 (223)
274 1zun_B Sulfate adenylate trans 98.0 2.3E-05 7.8E-10 83.2 10.3 109 204-328 102-233 (434)
275 2yc2_C IFT27, small RAB-relate 98.0 3.6E-06 1.2E-10 78.0 3.6 58 336-393 19-84 (208)
276 3th5_A RAS-related C3 botulinu 97.2 1.1E-06 3.7E-11 82.3 0.0 88 240-327 98-201 (204)
277 1mh1_A RAC1; GTP-binding, GTPa 98.0 1.1E-05 3.9E-10 73.1 6.9 57 336-394 4-65 (186)
278 4gzl_A RAS-related C3 botulinu 98.0 9E-06 3.1E-10 76.4 6.3 58 335-394 28-90 (204)
279 3cpj_B GTP-binding protein YPT 97.9 8.2E-06 2.8E-10 77.7 6.1 58 336-393 12-73 (223)
280 2elf_A Protein translation elo 97.9 3.4E-05 1.2E-09 80.5 11.1 112 201-330 55-179 (370)
281 3izy_P Translation initiation 97.9 7.8E-07 2.7E-11 97.4 -1.4 108 336-444 3-117 (537)
282 3q3j_B RHO-related GTP-binding 97.9 3E-05 1E-09 73.6 9.8 57 336-393 26-86 (214)
283 2qtf_A Protein HFLX, GTP-bindi 97.9 3.4E-05 1.2E-09 80.4 10.9 120 206-331 226-354 (364)
284 2ew1_A RAS-related protein RAB 97.9 1.1E-05 3.6E-10 76.3 6.3 57 336-393 25-86 (201)
285 3lvq_E ARF-GAP with SH3 domain 97.9 1.6E-05 5.3E-10 85.4 8.3 111 206-330 366-483 (497)
286 2q3h_A RAS homolog gene family 97.9 1.1E-05 3.8E-10 74.9 6.1 57 336-394 19-80 (201)
287 3q3j_B RHO-related GTP-binding 97.9 7.6E-06 2.6E-10 77.7 5.0 87 240-330 95-202 (214)
288 3dz8_A RAS-related protein RAB 97.9 3.5E-06 1.2E-10 77.9 2.4 121 336-460 22-160 (191)
289 2hup_A RAS-related protein RAB 97.9 1.2E-05 4.1E-10 75.4 6.1 120 336-460 28-166 (201)
290 2h5e_A Peptide chain release f 97.9 1.2E-05 4.2E-10 87.8 6.9 120 336-459 12-163 (529)
291 2fu5_C RAS-related protein RAB 97.9 3.7E-06 1.3E-10 76.7 2.2 57 336-393 7-68 (183)
292 1d2e_A Elongation factor TU (E 97.9 3.2E-05 1.1E-09 81.2 9.2 112 204-331 64-195 (397)
293 3oes_A GTPase rhebl1; small GT 97.9 1.3E-05 4.4E-10 74.8 5.5 108 207-330 73-186 (201)
294 3ihw_A Centg3; RAS, centaurin, 97.9 2.5E-05 8.6E-10 72.2 7.4 85 240-329 82-178 (184)
295 2xex_A Elongation factor G; GT 97.9 2.6E-05 8.9E-10 87.8 8.9 120 336-459 9-156 (693)
296 3gj0_A GTP-binding nuclear pro 97.8 9.5E-06 3.2E-10 76.9 4.5 108 207-329 65-173 (221)
297 1zun_B Sulfate adenylate trans 97.8 7.1E-06 2.4E-10 87.1 3.9 27 334-360 21-47 (434)
298 1wb1_A Translation elongation 97.8 4.6E-06 1.6E-10 90.1 2.4 106 336-445 18-139 (482)
299 3b1v_A Ferrous iron uptake tra 97.8 8.1E-06 2.8E-10 81.6 3.9 109 207-329 50-162 (272)
300 3llu_A RAS-related GTP-binding 97.8 1.7E-05 5.9E-10 73.7 5.9 108 335-445 18-143 (196)
301 1g7s_A Translation initiation 97.8 6.3E-05 2.1E-09 83.3 11.2 108 207-330 71-217 (594)
302 2wjg_A FEOB, ferrous iron tran 97.8 2E-05 6.8E-10 72.0 6.1 111 206-331 54-169 (188)
303 1m7b_A RND3/RHOE small GTP-bin 97.8 2.2E-05 7.7E-10 72.0 6.4 57 336-393 6-66 (184)
304 1d2e_A Elongation factor TU (E 97.8 5.9E-06 2E-10 86.7 2.7 58 336-393 2-77 (397)
305 2zej_A Dardarin, leucine-rich 97.8 1.8E-05 6.3E-10 72.8 5.7 57 337-393 2-67 (184)
306 3cbq_A GTP-binding protein REM 97.8 9.7E-05 3.3E-09 69.0 10.6 89 240-330 93-187 (195)
307 3c5h_A Glucocorticoid receptor 97.8 3.8E-05 1.3E-09 75.4 7.8 84 243-328 162-252 (255)
308 3lxw_A GTPase IMAP family memb 97.8 2.3E-05 8E-10 76.7 6.2 124 205-331 69-208 (247)
309 2j69_A Bacterial dynamin-like 97.8 3.4E-05 1.2E-09 86.9 8.1 111 207-330 175-324 (695)
310 2c78_A Elongation factor TU-A; 97.8 4.2E-06 1.5E-10 87.9 0.6 108 335-446 9-143 (405)
311 1yrb_A ATP(GTP)binding protein 97.8 3.7E-05 1.3E-09 74.7 7.2 115 206-331 109-257 (262)
312 2f7s_A C25KG, RAS-related prot 97.8 1.2E-05 4.2E-10 75.6 3.6 119 336-459 24-172 (217)
313 1zo1_I IF2, translation initia 97.8 5.9E-06 2E-10 89.8 1.5 108 336-444 3-116 (501)
314 2zej_A Dardarin, leucine-rich 97.7 6.8E-05 2.3E-09 69.0 8.4 90 240-330 76-177 (184)
315 3th5_A RAS-related C3 botulinu 96.9 4.3E-06 1.5E-10 78.1 0.0 57 335-393 28-89 (204)
316 2wkq_A NPH1-1, RAS-related C3 97.7 2.1E-05 7.2E-10 78.6 5.1 108 208-329 205-328 (332)
317 2g3y_A GTP-binding protein GEM 97.7 2.9E-05 1E-09 74.5 5.8 58 336-393 36-98 (211)
318 1gwn_A RHO-related GTP-binding 97.7 2.7E-05 9.1E-10 73.6 5.4 57 336-393 27-87 (205)
319 2f9l_A RAB11B, member RAS onco 97.7 4.4E-05 1.5E-09 71.1 6.8 58 337-394 5-66 (199)
320 3ihw_A Centg3; RAS, centaurin, 97.7 4E-05 1.4E-09 70.9 6.4 58 335-393 18-78 (184)
321 3bwd_D RAC-like GTP-binding pr 97.7 1.2E-05 4E-10 72.9 2.5 56 336-393 7-67 (182)
322 2elf_A Protein translation elo 97.7 1E-05 3.6E-10 84.4 2.4 46 339-393 23-71 (370)
323 3t34_A Dynamin-related protein 97.7 4.7E-05 1.6E-09 78.6 7.3 25 338-362 35-59 (360)
324 1m7b_A RND3/RHOE small GTP-bin 97.7 1.5E-05 5.3E-10 73.1 3.3 105 207-328 56-180 (184)
325 3izy_P Translation initiation 97.7 2.2E-05 7.4E-10 86.0 4.6 132 207-354 53-211 (537)
326 3l0i_B RAS-related protein RAB 97.7 5.4E-06 1.8E-10 77.3 -0.2 103 207-329 83-194 (199)
327 3c5c_A RAS-like protein 12; GD 97.7 4.4E-05 1.5E-09 70.5 6.0 101 207-328 70-183 (187)
328 1dar_A EF-G, elongation factor 97.7 7.8E-05 2.7E-09 83.9 8.9 120 336-459 11-158 (691)
329 3avx_A Elongation factor TS, e 97.7 0.00015 5.1E-09 85.5 11.4 114 201-330 354-485 (1289)
330 2www_A Methylmalonic aciduria 97.7 9.6E-05 3.3E-09 76.4 8.9 102 205-329 166-277 (349)
331 2qm8_A GTPase/ATPase; G protei 97.6 4.1E-05 1.4E-09 78.8 5.8 23 336-358 54-76 (337)
332 3sjy_A Translation initiation 97.6 1.1E-05 3.7E-10 84.8 1.5 27 335-361 6-32 (403)
333 1gwn_A RHO-related GTP-binding 97.6 2.2E-05 7.6E-10 74.2 3.4 108 207-328 77-201 (205)
334 3q5d_A Atlastin-1; G protein, 97.6 3.5E-05 1.2E-09 82.5 5.3 25 336-360 66-90 (447)
335 2xex_A Elongation factor G; GT 97.6 0.00031 1E-08 79.1 12.9 69 205-289 74-142 (693)
336 1oix_A RAS-related protein RAB 97.6 7.1E-05 2.4E-09 69.6 6.5 58 337-394 29-90 (191)
337 2x2e_A Dynamin-1; nitration, h 97.6 6.2E-05 2.1E-09 77.6 6.6 117 206-327 130-254 (353)
338 1g7s_A Translation initiation 97.6 1.4E-05 4.6E-10 88.7 1.7 107 336-444 4-135 (594)
339 2p67_A LAO/AO transport system 97.6 8.1E-05 2.8E-09 76.5 7.4 102 205-329 148-259 (341)
340 1r5b_A Eukaryotic peptide chai 97.6 0.00023 8E-09 76.3 11.2 101 204-320 119-241 (467)
341 3lxx_A GTPase IMAP family memb 97.6 0.00011 3.9E-09 70.7 7.9 83 205-291 77-162 (239)
342 3izq_1 HBS1P, elongation facto 97.6 8E-05 2.7E-09 82.7 7.5 105 202-320 241-361 (611)
343 2rdo_7 EF-G, elongation factor 97.6 6.6E-05 2.3E-09 84.7 7.0 120 336-459 9-163 (704)
344 3mca_A HBS1, elongation factor 97.6 1.7E-05 5.7E-10 87.9 2.0 110 205-330 254-396 (592)
345 3cb4_D GTP-binding protein LEP 97.6 3.6E-05 1.2E-09 85.4 4.4 120 337-460 4-153 (599)
346 1jny_A EF-1-alpha, elongation 97.6 0.00016 5.5E-09 76.7 9.3 111 204-328 82-222 (435)
347 2wkq_A NPH1-1, RAS-related C3 97.6 0.00014 4.8E-09 72.6 8.4 58 335-394 153-215 (332)
348 2qag_A Septin-2, protein NEDD5 97.6 5.3E-05 1.8E-09 78.7 5.2 59 336-394 36-107 (361)
349 1dar_A EF-G, elongation factor 97.6 0.00029 9.9E-09 79.3 11.5 69 205-289 76-144 (691)
350 1pui_A ENGB, probable GTP-bind 97.5 0.00094 3.2E-08 62.1 13.0 121 207-330 73-198 (210)
351 2p67_A LAO/AO transport system 97.5 4.1E-05 1.4E-09 78.7 3.9 39 335-373 54-98 (341)
352 3dpu_A RAB family protein; roc 97.5 0.00015 5.2E-09 78.8 8.6 108 206-330 98-207 (535)
353 2h5e_A Peptide chain release f 97.5 0.00029 9.8E-09 77.0 10.7 69 205-289 81-149 (529)
354 2dy1_A Elongation factor G; tr 97.5 0.00026 8.9E-09 79.3 10.4 120 336-459 8-154 (665)
355 3p32_A Probable GTPase RV1496/ 97.5 0.00012 4E-09 75.7 6.7 36 336-371 78-119 (355)
356 2qpt_A EH domain-containing pr 97.5 9.4E-05 3.2E-09 81.2 6.0 86 207-299 155-243 (550)
357 1f60_A Elongation factor EEF1A 97.5 9.9E-05 3.4E-09 79.0 6.0 102 202-319 81-200 (458)
358 1kk1_A EIF2gamma; initiation o 97.5 9.8E-05 3.4E-09 77.6 5.7 59 335-393 8-94 (410)
359 3r7w_A Gtpase1, GTP-binding pr 97.5 0.00022 7.4E-09 72.1 8.0 108 206-323 52-173 (307)
360 4dkx_A RAS-related protein RAB 97.4 0.00017 5.9E-09 69.4 6.4 140 336-480 12-174 (216)
361 4dkx_A RAS-related protein RAB 97.4 0.00014 4.7E-09 70.1 5.7 84 240-329 82-174 (216)
362 2ywe_A GTP-binding protein LEP 97.4 0.00012 4E-09 81.2 5.9 121 336-460 5-155 (600)
363 1s0u_A EIF-2-gamma, translatio 97.4 0.00014 4.8E-09 76.4 6.0 40 336-375 7-48 (408)
364 1f60_A Elongation factor EEF1A 97.4 2.9E-05 9.9E-10 83.2 0.6 25 336-360 6-30 (458)
365 3vqt_A RF-3, peptide chain rel 97.4 0.00056 1.9E-08 75.0 10.8 68 205-288 99-166 (548)
366 1zo1_I IF2, translation initia 97.4 0.00013 4.3E-09 79.3 5.6 106 206-327 51-163 (501)
367 2dy1_A Elongation factor G; tr 97.4 0.00061 2.1E-08 76.3 11.0 65 207-287 75-139 (665)
368 2rdo_7 EF-G, elongation factor 97.4 0.00068 2.3E-08 76.5 11.4 68 206-289 82-149 (704)
369 1r5b_A Eukaryotic peptide chai 97.4 0.0001 3.6E-09 79.0 4.5 25 335-359 41-65 (467)
370 1n0u_A EF-2, elongation factor 97.3 0.00025 8.4E-09 81.6 7.6 25 336-360 18-42 (842)
371 3sop_A Neuronal-specific septi 97.3 0.00013 4.5E-09 72.8 4.7 59 337-395 2-73 (270)
372 2qm8_A GTPase/ATPase; G protei 97.3 0.00036 1.2E-08 71.8 7.9 102 204-329 146-259 (337)
373 3vqt_A RF-3, peptide chain rel 97.3 0.00078 2.7E-08 73.8 11.0 121 336-460 30-182 (548)
374 3avx_A Elongation factor TS, e 97.3 0.00012 4.3E-09 86.1 4.9 111 335-446 294-427 (1289)
375 3t34_A Dynamin-related protein 97.3 0.00035 1.2E-08 72.0 7.0 82 207-290 137-219 (360)
376 1tq4_A IIGP1, interferon-induc 97.2 0.00061 2.1E-08 72.2 8.8 60 336-395 68-133 (413)
377 2wsm_A Hydrogenase expression/ 97.2 8.5E-05 2.9E-09 70.1 1.9 37 336-372 29-70 (221)
378 1jny_A EF-1-alpha, elongation 97.2 0.0001 3.6E-09 78.2 2.1 59 335-393 4-95 (435)
379 2qnr_A Septin-2, protein NEDD5 97.2 0.00023 7.9E-09 72.0 4.5 57 337-393 18-87 (301)
380 2qag_C Septin-7; cell cycle, c 97.2 0.0002 6.7E-09 76.1 3.9 58 337-395 31-101 (418)
381 1wxq_A GTP-binding protein; st 97.1 0.0002 6.8E-09 75.5 3.8 43 207-256 72-114 (397)
382 1nrj_B SR-beta, signal recogni 97.1 0.001 3.6E-08 62.3 8.2 75 207-291 56-137 (218)
383 2qag_B Septin-6, protein NEDD5 97.1 0.00046 1.6E-08 73.5 5.8 58 338-395 43-108 (427)
384 1udx_A The GTP-binding protein 97.0 0.00064 2.2E-08 72.1 6.5 117 206-331 205-325 (416)
385 2g3y_A GTP-binding protein GEM 97.0 0.0006 2E-08 65.2 5.5 90 241-330 109-202 (211)
386 2ged_A SR-beta, signal recogni 97.0 0.00083 2.8E-08 61.5 6.2 84 206-299 91-181 (193)
387 3j25_A Tetracycline resistance 97.0 0.00078 2.7E-08 75.1 6.7 68 205-288 66-133 (638)
388 2hf9_A Probable hydrogenase ni 96.9 0.0013 4.3E-08 62.2 6.8 25 336-360 37-61 (226)
389 2cjw_A GTP-binding protein GEM 96.9 0.0014 4.9E-08 60.7 6.6 89 241-329 78-170 (192)
390 2j37_W Signal recognition part 96.8 0.0012 4.1E-08 71.7 6.6 32 336-367 100-137 (504)
391 1h65_A Chloroplast outer envel 96.8 0.0024 8.2E-08 62.8 7.6 79 205-290 86-170 (270)
392 1yrb_A ATP(GTP)binding protein 96.8 0.00036 1.2E-08 67.6 1.5 36 335-370 12-52 (262)
393 3c5h_A Glucocorticoid receptor 96.7 0.0012 4.1E-08 64.6 5.2 26 335-360 17-51 (255)
394 4fn5_A EF-G 1, elongation fact 96.7 0.0078 2.7E-07 67.8 12.0 65 207-287 86-150 (709)
395 2wsm_A Hydrogenase expression/ 96.7 0.0012 4.1E-08 62.1 4.3 82 243-330 129-213 (221)
396 2f9l_A RAB11B, member RAS onco 96.5 0.0053 1.8E-07 56.8 7.7 91 240-330 74-167 (199)
397 1ko7_A HPR kinase/phosphatase; 96.5 0.0025 8.6E-08 65.2 5.6 91 263-362 72-169 (314)
398 4fn5_A EF-G 1, elongation fact 96.5 0.0048 1.6E-07 69.5 8.3 119 337-459 13-166 (709)
399 2qag_A Septin-2, protein NEDD5 96.4 0.0065 2.2E-07 62.9 7.9 71 244-317 146-220 (361)
400 3j25_A Tetracycline resistance 96.3 0.0022 7.6E-08 71.4 4.6 118 338-459 3-148 (638)
401 3r7w_B Gtpase2, GTP-binding pr 96.3 0.0024 8.4E-08 65.7 4.5 55 339-393 1-57 (331)
402 3l82_B F-box only protein 4; T 96.2 0.015 5.1E-07 56.5 9.1 94 232-328 117-220 (227)
403 4ido_A Atlastin-1; GTPase, GTP 96.2 0.0071 2.4E-07 64.8 7.2 61 336-396 66-154 (457)
404 3def_A T7I23.11 protein; chlor 96.1 0.011 3.9E-07 57.7 7.8 78 205-289 83-166 (262)
405 4a9a_A Ribosome-interacting GT 96.1 0.0025 8.4E-08 66.8 3.1 75 205-287 118-195 (376)
406 2v3c_C SRP54, signal recogniti 95.9 0.0045 1.6E-07 65.8 4.0 23 337-359 99-121 (432)
407 1oix_A RAS-related protein RAB 95.8 0.014 4.7E-07 53.9 6.7 87 240-328 98-189 (191)
408 1cip_A Protein (guanine nucleo 95.8 0.0037 1.3E-07 64.8 3.1 90 240-329 213-342 (353)
409 3c8u_A Fructokinase; YP_612366 95.7 0.0082 2.8E-07 56.5 4.8 41 319-360 5-45 (208)
410 1zcb_A G alpha I/13; GTP-bindi 95.6 0.0059 2E-07 63.5 3.5 90 240-329 221-351 (362)
411 3ney_A 55 kDa erythrocyte memb 95.5 0.0048 1.7E-07 58.9 2.3 39 337-375 19-58 (197)
412 3dm5_A SRP54, signal recogniti 95.4 0.032 1.1E-06 59.6 8.4 23 336-358 99-121 (443)
413 1n0u_A EF-2, elongation factor 95.3 0.016 5.4E-07 66.6 6.0 66 206-287 98-163 (842)
414 3l2o_B F-box only protein 4; s 95.1 0.063 2.1E-06 54.5 9.1 96 231-329 201-306 (312)
415 3szr_A Interferon-induced GTP- 95.1 0.019 6.6E-07 63.5 5.7 23 339-361 47-69 (608)
416 1kgd_A CASK, peripheral plasma 95.0 0.007 2.4E-07 55.8 1.5 38 337-374 5-43 (180)
417 2hf9_A Probable hydrogenase ni 94.9 0.034 1.2E-06 52.2 6.0 81 243-329 139-222 (226)
418 3r7w_B Gtpase2, GTP-binding pr 94.6 0.078 2.7E-06 54.5 8.4 85 240-325 69-168 (331)
419 1zp6_A Hypothetical protein AT 94.6 0.019 6.6E-07 52.5 3.5 25 336-360 8-32 (191)
420 1rz3_A Hypothetical protein rb 94.4 0.038 1.3E-06 51.7 5.0 25 335-359 20-44 (201)
421 1ye8_A Protein THEP1, hypothet 94.3 0.015 5.3E-07 54.0 2.2 23 339-361 2-24 (178)
422 3kl4_A SRP54, signal recogniti 94.3 0.038 1.3E-06 58.8 5.4 23 336-358 96-118 (433)
423 2j37_W Signal recognition part 94.3 0.1 3.5E-06 56.5 8.9 107 205-328 183-310 (504)
424 1lvg_A Guanylate kinase, GMP k 94.3 0.013 4.5E-07 55.0 1.6 24 337-360 4-27 (198)
425 3ec2_A DNA replication protein 94.1 0.031 1.1E-06 50.9 3.6 43 318-360 19-61 (180)
426 3tr0_A Guanylate kinase, GMP k 94.0 0.022 7.4E-07 52.7 2.4 24 337-360 7-30 (205)
427 2xtz_A Guanine nucleotide-bind 93.9 0.05 1.7E-06 56.3 5.2 89 240-328 203-342 (354)
428 3tau_A Guanylate kinase, GMP k 93.8 0.027 9.2E-07 53.1 2.6 26 336-361 7-32 (208)
429 1znw_A Guanylate kinase, GMP k 93.5 0.028 9.7E-07 52.7 2.3 25 336-360 19-43 (207)
430 3asz_A Uridine kinase; cytidin 93.5 0.034 1.1E-06 51.9 2.8 25 336-360 5-29 (211)
431 2qnr_A Septin-2, protein NEDD5 93.4 0.11 3.6E-06 52.3 6.4 94 244-345 127-223 (301)
432 3a00_A Guanylate kinase, GMP k 93.4 0.027 9.3E-07 51.9 1.9 21 340-360 4-24 (186)
433 2j41_A Guanylate kinase; GMP, 93.3 0.033 1.1E-06 51.4 2.4 25 337-361 6-30 (207)
434 1z6g_A Guanylate kinase; struc 93.3 0.029 1E-06 53.4 2.0 24 337-360 23-46 (218)
435 2pcj_A ABC transporter, lipopr 93.1 0.043 1.5E-06 52.8 2.9 25 337-361 30-54 (224)
436 1sq5_A Pantothenate kinase; P- 93.1 0.07 2.4E-06 53.6 4.6 26 335-360 78-103 (308)
437 3tqc_A Pantothenate kinase; bi 93.0 0.059 2E-06 55.0 4.0 41 319-359 74-114 (321)
438 1s96_A Guanylate kinase, GMP k 92.9 0.04 1.4E-06 52.9 2.3 26 336-361 15-40 (219)
439 4fid_A G protein alpha subunit 92.8 0.032 1.1E-06 57.6 1.6 55 231-288 175-242 (340)
440 4gp7_A Metallophosphoesterase; 92.8 0.061 2.1E-06 49.1 3.3 23 337-359 9-31 (171)
441 4eun_A Thermoresistant glucoki 92.7 0.044 1.5E-06 51.0 2.3 24 336-359 28-51 (200)
442 1azs_C GS-alpha; complex (lyas 92.7 0.13 4.5E-06 54.2 6.1 48 240-287 237-297 (402)
443 3tif_A Uncharacterized ABC tra 92.7 0.057 2E-06 52.3 3.1 25 337-361 31-55 (235)
444 2qor_A Guanylate kinase; phosp 92.7 0.048 1.6E-06 50.9 2.5 25 336-360 11-35 (204)
445 1kag_A SKI, shikimate kinase I 92.6 0.051 1.8E-06 48.8 2.5 23 338-360 5-27 (173)
446 2qag_C Septin-7; cell cycle, c 92.6 0.081 2.8E-06 56.0 4.3 82 243-327 138-223 (418)
447 1odf_A YGR205W, hypothetical 3 92.6 0.12 4.1E-06 51.9 5.4 26 335-360 29-54 (290)
448 2dby_A GTP-binding protein; GD 92.5 0.15 5.1E-06 53.0 6.3 43 206-255 69-111 (368)
449 3lw7_A Adenylate kinase relate 92.4 0.06 2E-06 47.6 2.7 20 338-357 2-21 (179)
450 1g6h_A High-affinity branched- 92.4 0.057 2E-06 53.0 2.7 25 337-361 33-57 (257)
451 2bdt_A BH3686; alpha-beta prot 92.3 0.068 2.3E-06 48.9 3.0 21 339-359 4-24 (189)
452 2onk_A Molybdate/tungstate ABC 92.3 0.059 2E-06 52.6 2.7 23 339-361 26-48 (240)
453 2cbz_A Multidrug resistance-as 92.3 0.069 2.4E-06 51.8 3.1 25 337-361 31-55 (237)
454 1knq_A Gluconate kinase; ALFA/ 92.2 0.075 2.6E-06 47.9 3.1 23 337-359 8-30 (175)
455 1sgw_A Putative ABC transporte 92.2 0.063 2.1E-06 51.5 2.7 23 339-361 37-59 (214)
456 4g1u_C Hemin import ATP-bindin 92.2 0.061 2.1E-06 53.3 2.7 25 337-361 37-61 (266)
457 3kb2_A SPBC2 prophage-derived 92.2 0.063 2.1E-06 47.8 2.6 21 339-359 3-23 (173)
458 3gfo_A Cobalt import ATP-bindi 92.2 0.062 2.1E-06 53.6 2.7 25 337-361 34-58 (275)
459 3uie_A Adenylyl-sulfate kinase 92.2 0.064 2.2E-06 49.9 2.7 25 336-360 24-48 (200)
460 1mv5_A LMRA, multidrug resista 92.2 0.086 2.9E-06 51.2 3.7 25 337-361 28-52 (243)
461 3cm0_A Adenylate kinase; ATP-b 92.2 0.076 2.6E-06 48.2 3.1 24 336-359 3-26 (186)
462 3lnc_A Guanylate kinase, GMP k 92.2 0.049 1.7E-06 51.8 1.9 24 337-360 27-51 (231)
463 1jjv_A Dephospho-COA kinase; P 92.1 0.078 2.7E-06 49.2 3.1 22 338-359 3-24 (206)
464 1b0u_A Histidine permease; ABC 92.0 0.076 2.6E-06 52.3 3.1 25 337-361 32-56 (262)
465 1ji0_A ABC transporter; ATP bi 92.0 0.068 2.3E-06 51.9 2.7 25 337-361 32-56 (240)
466 2qt1_A Nicotinamide riboside k 92.0 0.093 3.2E-06 48.8 3.6 25 336-360 20-44 (207)
467 2rhm_A Putative kinase; P-loop 92.0 0.091 3.1E-06 47.8 3.4 23 337-359 5-27 (193)
468 1ex7_A Guanylate kinase; subst 92.0 0.05 1.7E-06 51.3 1.6 21 340-360 4-24 (186)
469 2d2e_A SUFC protein; ABC-ATPas 92.0 0.068 2.3E-06 52.2 2.7 24 337-360 29-52 (250)
470 2bbw_A Adenylate kinase 4, AK4 92.0 0.078 2.7E-06 51.0 3.0 25 337-361 27-54 (246)
471 2ff7_A Alpha-hemolysin translo 91.9 0.075 2.6E-06 51.9 2.9 25 337-361 35-59 (247)
472 1ly1_A Polynucleotide kinase; 91.9 0.086 2.9E-06 47.3 3.0 22 338-359 3-24 (181)
473 2qi9_C Vitamin B12 import ATP- 91.8 0.074 2.5E-06 52.2 2.7 25 337-361 26-50 (249)
474 2pze_A Cystic fibrosis transme 91.7 0.081 2.8E-06 51.0 2.9 25 337-361 34-58 (229)
475 2ghi_A Transport protein; mult 91.7 0.086 3E-06 51.9 3.1 25 337-361 46-70 (260)
476 2if2_A Dephospho-COA kinase; a 91.7 0.084 2.9E-06 48.8 2.9 21 339-359 3-23 (204)
477 3aez_A Pantothenate kinase; tr 91.7 0.073 2.5E-06 53.9 2.7 26 335-360 88-113 (312)
478 2olj_A Amino acid ABC transpor 91.7 0.088 3E-06 52.1 3.1 25 337-361 50-74 (263)
479 2v9p_A Replication protein E1; 91.6 0.068 2.3E-06 54.3 2.3 25 336-360 125-149 (305)
480 1cke_A CK, MSSA, protein (cyti 91.6 0.083 2.8E-06 49.6 2.8 24 337-360 5-28 (227)
481 2ixe_A Antigen peptide transpo 91.6 0.09 3.1E-06 52.1 3.1 25 337-361 45-69 (271)
482 2ihy_A ABC transporter, ATP-bi 91.6 0.086 2.9E-06 52.6 3.0 25 337-361 47-71 (279)
483 1nks_A Adenylate kinase; therm 91.6 0.099 3.4E-06 47.3 3.2 21 339-359 3-23 (194)
484 2xxa_A Signal recognition part 91.5 0.21 7.3E-06 52.9 6.1 30 336-365 99-135 (433)
485 3b85_A Phosphate starvation-in 91.5 0.069 2.4E-06 50.9 2.1 24 337-360 22-45 (208)
486 1vpl_A ABC transporter, ATP-bi 91.5 0.094 3.2E-06 51.6 3.1 25 337-361 41-65 (256)
487 2nq2_C Hypothetical ABC transp 91.5 0.083 2.8E-06 51.9 2.7 25 337-361 31-55 (253)
488 1np6_A Molybdopterin-guanine d 91.5 0.083 2.8E-06 49.1 2.5 23 338-360 7-29 (174)
489 2jaq_A Deoxyguanosine kinase; 91.5 0.088 3E-06 48.2 2.7 21 339-359 2-22 (205)
490 2zu0_C Probable ATP-dependent 91.4 0.096 3.3E-06 51.8 3.1 24 337-360 46-69 (267)
491 1kht_A Adenylate kinase; phosp 91.4 0.093 3.2E-06 47.5 2.8 23 337-359 3-25 (192)
492 1nn5_A Similar to deoxythymidy 91.3 0.11 3.6E-06 48.2 3.2 24 336-359 8-31 (215)
493 2wwf_A Thymidilate kinase, put 91.3 0.11 3.6E-06 48.2 3.2 24 336-359 9-32 (212)
494 2yz2_A Putative ABC transporte 91.3 0.1 3.5E-06 51.5 3.1 25 337-361 33-57 (266)
495 1qhx_A CPT, protein (chloramph 91.3 0.097 3.3E-06 47.1 2.8 22 338-359 4-25 (178)
496 2plr_A DTMP kinase, probable t 91.2 0.11 3.8E-06 47.8 3.1 23 337-359 4-26 (213)
497 3nh6_A ATP-binding cassette SU 91.2 0.075 2.6E-06 53.9 2.1 26 336-361 79-104 (306)
498 2jeo_A Uridine-cytidine kinase 91.1 0.094 3.2E-06 50.5 2.7 25 336-360 24-48 (245)
499 2f1r_A Molybdopterin-guanine d 91.1 0.051 1.8E-06 50.3 0.7 22 339-360 4-25 (171)
500 3t61_A Gluconokinase; PSI-biol 91.1 0.095 3.3E-06 48.6 2.5 22 338-359 19-40 (202)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-44 Score=364.21 Aligned_cols=257 Identities=24% Similarity=0.367 Sum_probs=208.4
Q ss_pred hHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhc-cCCeEE
Q psy6781 229 QSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSK-EYPTIA 307 (534)
Q Consensus 229 lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~-~~p~v~ 307 (534)
++.++++++++.++++|+|++|+|||+|.+++++.+++++ .++|.|+|+||+||++.+....|.+++.+ .++ +
T Consensus 9 hm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~--~ 82 (282)
T 1puj_A 9 HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIR--S 82 (282)
T ss_dssp CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCC--E
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCc--E
Confidence 4677899999999999999999999999999999999887 36999999999999998888899999965 343 4
Q ss_pred eeeccCCCCChHHHHHHHHHHhhhhc--------cccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE
Q psy6781 308 FHASMTHPFGKGSIINLLRQFSKLHT--------ERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT 379 (534)
Q Consensus 308 f~~Sa~~~~gi~~Li~~L~~~~~~~~--------~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~ 379 (534)
+.+|+.++.|++.|++.+.++++... ....++|+++|+||||||||||+|.+...+.+++.||+|++.+++.
T Consensus 83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~ 162 (282)
T 1puj_A 83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK 162 (282)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE
Confidence 55688999999999998888765331 2356899999999999999999999999999999999999999888
Q ss_pred eCccEEEEeCCCcccCCCCCc-chHHHHHccccccccCCCchh---hHHHHHHhhccceeeehcCCCCC-CCHHHHHHHH
Q psy6781 380 LMRRIYLIDCPGVVYDMTNVE-TDTEKVLRGVVRVENIDDPVQ---YIDAVLERIKKVHLVKTYGIDEW-EDTEDFLKKL 454 (534)
Q Consensus 380 ~~~~i~liDtPGi~~p~~~~~-~~~e~vL~gvv~v~~i~~~~~---~i~~iL~r~~k~~l~~~ykId~~-~d~~efLe~l 454 (534)
++..+.|+||||+..+..... .....++.+++..+.+ ++.+ ++.++|.+..+..|...|+++.+ .+..+||+.+
T Consensus 163 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~y~~~~~~~~~~~~l~~~ 241 (282)
T 1puj_A 163 VGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSII-NLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAI 241 (282)
T ss_dssp ETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSS-CHHHHHHHHHHHHHHHCHHHHHHHTTCSSCCSSHHHHHHHH
T ss_pred eCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhC-CHHHHHHHHHHHHHHhChHHHHHHcCCCCCCCCHHHHHHHH
Confidence 888999999999998874221 2245677888876655 4443 56666777777888899999855 5889999999
Q ss_pred HHHhCCccccCcchHHHHHHHHHHHHHcCCCCcccCCC
Q psy6781 455 AFKWGKIKKKGEPVITASAKMVLNDWQRGKLPYYTVPE 492 (534)
Q Consensus 455 a~k~g~l~kgG~pD~~~aA~~vL~d~~~Gkl~~~~~pp 492 (534)
|+++|++.|||+||+++||+.||+||++||||+|++++
T Consensus 242 a~~~g~~~kgg~~d~~~aa~~~l~d~~~Gklg~~~l~~ 279 (282)
T 1puj_A 242 GEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQ 279 (282)
T ss_dssp HHHHTCBCSTTCBCHHHHHHHHHHHHHTTTTCSCCSCC
T ss_pred HHHhCCcccCCcccHHHHHHHHHHHHHcCCCCceECCC
Confidence 99999999999999999999999999999999999763
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=3.2e-41 Score=338.55 Aligned_cols=245 Identities=24% Similarity=0.332 Sum_probs=190.2
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhc-
Q psy6781 223 WVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSK- 301 (534)
Q Consensus 223 ~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~- 301 (534)
|++ |++.++|++++..++++|+||+|+|||+|.+++++.++ ++ ++|.|+|+||+||++......|.+++.+
T Consensus 3 w~P--Ghm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 3 WYP--GHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp --------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred CCc--hHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence 555 35778899999999999999999999999999988777 54 6999999999999998888899999965
Q ss_pred cCCeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeC
Q psy6781 302 EYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM 381 (534)
Q Consensus 302 ~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~ 381 (534)
.++. .+|+.++.|++.|++.|.+.+ ++|+++|.||||||||||+|.+...+.++++||+|+..+++.++
T Consensus 75 g~~v---~iSa~~~~gi~~L~~~l~~~~--------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~ 143 (262)
T 3cnl_A 75 GKRV---ITTHKGEPRKVLLKKLSFDRL--------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE 143 (262)
T ss_dssp TCCE---EECCTTSCHHHHHHHHCCCTT--------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT
T ss_pred CCeE---EEECCCCcCHHHHHHHHHHhh--------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC
Confidence 3553 568899999998888776322 68999999999999999999999988999999999999988888
Q ss_pred ccEEEEeCCCcccCCCCCcchHHHHHccccccccCCCchhhHHHHHHhhccceeeehcCCCCCCCHHHHHHHHHHHhCCc
Q psy6781 382 RRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFKWGKI 461 (534)
Q Consensus 382 ~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~~efLe~la~k~g~l 461 (534)
..+.|+||||+..+... . +.+.....++. ..+...++.+.|.+..+..+...|+++. .+ .+||+.+|+++|++
T Consensus 144 ~~~~l~DtpG~~~~~~~-~-~~~~~~~~~~d---~~~~~~~~~~~l~~~~~~~l~~~y~i~~-~d-~~~l~~ia~~~g~~ 216 (262)
T 3cnl_A 144 NGVKILDTPGILYKNIF-S-EDLAAKLLLVG---SLPVERIEDQRIFERAFEIFARSIGIES-SF-SEFFEDFARKRGLL 216 (262)
T ss_dssp TSCEEESSCEECCCCCC-S-HHHHHHHHHTT---SSCGGGCCCHHHHHHHHHHHHHHHTCCC-CH-HHHHHHHHHHTTCB
T ss_pred CCEEEEECCCcccCcCC-C-ChhhcccccCC---HHHHHHHHHHHHHHhCHHHHHHHcCcCC-Cc-HHHHHHHHHHhCCc
Confidence 89999999999988731 1 11221111111 2233455666677777778888999984 44 89999999999999
Q ss_pred cccCcchHHHHHHHHHHHHHcCCCCcccCCCC
Q psy6781 462 KKKGEPVITASAKMVLNDWQRGKLPYYTVPEG 493 (534)
Q Consensus 462 ~kgG~pD~~~aA~~vL~d~~~Gkl~~~~~pp~ 493 (534)
.|||+||+++||+.||+||+.|+|++|++|+-
T Consensus 217 ~kgg~~d~~~aa~~~l~d~~~g~l~~~~l~~~ 248 (262)
T 3cnl_A 217 KKGGVPDIERALMLFFTEVAQGKAGRVSFERP 248 (262)
T ss_dssp CGGGCBCHHHHHHHHHHHHHTTTTCSCCSCCT
T ss_pred cCCCcccHHHHHHHHHHHHHcCCCCceECCCC
Confidence 99999999999999999999999999998853
No 3
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.90 E-value=5.6e-25 Score=225.54 Aligned_cols=200 Identities=19% Similarity=0.170 Sum_probs=143.6
Q ss_pred ccccceEEEecCc---cccccccccCCCC----CCCccCCHHHHHHhh--hcccccccccCceeEEecCCCCcCCCchhh
Q psy6781 154 RKHERVHVLDTES---YESVFGKKKQRKK----ANLSITNESELAALV--QTSNENYKEEKDFDIVRDNGGVTDAPRDWV 224 (534)
Q Consensus 154 ~~~~~~~~~~~e~---~~~~f~~~~~rkr----~~l~~gd~~~l~~~~--~~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l 224 (534)
+.++..|.|.+++ +. .+.|+.+++- ...+|||||++.... ...++++. +|.+.+.+.
T Consensus 17 ~~~~~~y~v~~~~~~~~~-~~~~~~rg~~~~~~~~~~vGD~V~~~~~~~~~~~i~~i~-~R~~~l~R~------------ 82 (307)
T 1t9h_A 17 KALSGFYYVLDESEDSDK-VIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIK-ERTNELIRP------------ 82 (307)
T ss_dssp EEETTEEEEEECSSSSCE-EEEEESCSSCCSCCCCCCBTCEEEEECCTTSCEEEEEEC-CCSCEETTT------------
T ss_pred EEECCEEEEEEcCCCCCc-EEEEEEcccccccCCCCCCCeEEEEEEcCCCceEEEEEc-chhhhhhHH------------
Confidence 3467788887764 43 6788877653 347899999997433 23466666 666665441
Q ss_pred hhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH-hhCCCCcEEEEEeCCCCCChhh----HHHHHHHH
Q psy6781 225 MAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR-REKPHKHLFFILNKVDLVPIWV----TQRWVAIL 299 (534)
Q Consensus 225 ~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~-~~~~~k~~IlVLNKiDLv~~~~----~~~wl~~l 299 (534)
+++|+|+|++|+|+++|.++.+ .|++||. .+..++++||||||+||+++.. +..|.++|
T Consensus 83 ---------------~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y 146 (307)
T 1t9h_A 83 ---------------PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY 146 (307)
T ss_dssp ---------------TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred ---------------HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH
Confidence 4679999999999999999987 8999985 3667999999999999998754 68899988
Q ss_pred hc-cCCeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCC-------Cc
Q psy6781 300 SK-EYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVP-------GE 371 (534)
Q Consensus 300 ~~-~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~p-------gt 371 (534)
.. .++. +.+|+.++.|++.|++.+. +-.++|+|.||||||||||+|.+.....++.++ ++
T Consensus 147 ~~~g~~v--~~~sa~~~~g~~~L~~~~~----------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 147 RNIGYDV--YLTSSKDQDSLADIIPHFQ----------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT 214 (307)
T ss_dssp HHHTCCE--EECCHHHHTTCTTTGGGGT----------TSEEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred HhCCCeE--EEEecCCCCCHHHHHhhcC----------CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc
Confidence 65 5543 4457777888777665442 457799999999999999999997766677666 46
Q ss_pred eeeeEEEEeCccEEEEeCCCcccCC
Q psy6781 372 TKVWQYITLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 372 Tk~~~~~~~~~~i~liDtPGi~~p~ 396 (534)
|+..+++... ..+++||||+....
T Consensus 215 t~~~~~~~~~-~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 215 TRHVELIHTS-GGLVADTPGFSSLE 238 (307)
T ss_dssp CCCCCEEEET-TEEEESSCSCSSCC
T ss_pred ccHHHHhhcC-CEEEecCCCccccc
Confidence 6666666655 67999999998654
No 4
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.89 E-value=3.1e-24 Score=224.12 Aligned_cols=207 Identities=21% Similarity=0.142 Sum_probs=153.9
Q ss_pred ccccceEEEecCccccccccccCCCCCCCccCCHHHHHHhhh--------cccccccccCceeEEecCCCCcCCCchhhh
Q psy6781 154 RKHERVHVLDTESYESVFGKKKQRKKANLSITNESELAALVQ--------TSNENYKEEKDFDIVRDNGGVTDAPRDWVM 225 (534)
Q Consensus 154 ~~~~~~~~~~~e~~~~~f~~~~~rkr~~l~~gd~~~l~~~~~--------~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~ 225 (534)
+.++..+.|++++++ .+.|..+++-..++|||||++....+ ..++++. +|.+.+.+.+.+-
T Consensus 54 ~~~~~~~~v~~~~g~-~~~~~~r~~~~~~~vGD~V~~~~~~~~~~~~~~~~~I~~i~-~R~~~l~R~~~~~--------- 122 (358)
T 2rcn_A 54 SRFGMHADVESADGE-VHRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVKGIVEAVH-ERTSVLTRPDFYD--------- 122 (358)
T ss_dssp EEETTEEEEEETTSC-EEEEEECTTCCCCCBTCEEEEECBC-------CCEEEEEEC-CCSCEEEEC-------------
T ss_pred EEECCEEEEEeCCCc-EEEEEecCCCCCCCCCcEEEEEeCCCccccccccceEeEEe-CCcCcccCcchhh---------
Confidence 356778888877765 67898888877799999999964322 3477777 8999998853321
Q ss_pred hhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH-hhCCCCcEEEEEeCCCCCChhh---HHHHHHHHhc
Q psy6781 226 AAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR-REKPHKHLFFILNKVDLVPIWV---TQRWVAILSK 301 (534)
Q Consensus 226 ~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~-~~~~~k~~IlVLNKiDLv~~~~---~~~wl~~l~~ 301 (534)
+++.+++|+|+|++| ||+.|..+.+ .|++||. .+..++++||||||+||+++.. +..|+.+|..
T Consensus 123 ----------~~~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~ 190 (358)
T 2rcn_A 123 ----------GVKPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN 190 (358)
T ss_dssp -----------CEEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHh
Confidence 222356799999965 7788988876 7999985 3456899999999999998765 6789998876
Q ss_pred -cCCeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCc-eeeCCCC---C----ce
Q psy6781 302 -EYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKV-CKTAPVP---G----ET 372 (534)
Q Consensus 302 -~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~p---g----tT 372 (534)
.|+ ++.+|+.++.|++.|...+. +-.++|+|.||||||||||+|.+... ..++.++ | +|
T Consensus 191 ~G~~--v~~~Sa~~~~gl~~L~~~~~----------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt 258 (358)
T 2rcn_A 191 IGYR--VLMVSSHTQDGLKPLEEALT----------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTT 258 (358)
T ss_dssp TTCC--EEECBTTTTBTHHHHHHHHT----------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------
T ss_pred CCCc--EEEEecCCCcCHHHHHHhcC----------CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccce
Confidence 455 45578899999888776542 44679999999999999999999776 6666554 3 46
Q ss_pred eeeEEEEeCccEEEEeCCCcccC
Q psy6781 373 KVWQYITLMRRIYLIDCPGVVYD 395 (534)
Q Consensus 373 k~~~~~~~~~~i~liDtPGi~~p 395 (534)
+..++..+.....++||||+...
T Consensus 259 ~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 259 TAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp CCCEEEECTTSCEEEECHHHHTC
T ss_pred EEEEEEEECCCCEecCcccHHHh
Confidence 66677777777889999999763
No 5
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.88 E-value=8e-23 Score=214.22 Aligned_cols=150 Identities=25% Similarity=0.364 Sum_probs=117.5
Q ss_pred HHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChh----hHHHHHHHHhccCC---eEEee
Q psy6781 237 LYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIW----VTQRWVAILSKEYP---TIAFH 309 (534)
Q Consensus 237 l~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~----~~~~wl~~l~~~~p---~v~f~ 309 (534)
+..+...+|+||+|+|+++|..+..+.+.+++ .++|+|+|+||+||++.. ....|+..+.+... ..+|.
T Consensus 63 l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 138 (368)
T 3h2y_A 63 LNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFL 138 (368)
T ss_dssp HHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHHhccCcEEEEEEECCCCcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 33455577899999999998776666776664 368999999999998754 45677765533222 25677
Q ss_pred eccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCC------ceeeCCCCCceeeeEEEEeCcc
Q psy6781 310 ASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKK------VCKTAPVPGETKVWQYITLMRR 383 (534)
Q Consensus 310 ~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~------~~~v~~~pgtTk~~~~~~~~~~ 383 (534)
+||.++.|+++|++.|.++.. ..+|+++|.||||||||||+|++.. .+.+++.||+|+....+.++.+
T Consensus 139 iSA~~g~gi~~L~~~l~~~~~------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~ 212 (368)
T 3h2y_A 139 ISAAKGQGIAELADAIEYYRG------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE 212 (368)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS
T ss_pred EeCCCCcCHHHHHhhhhhhcc------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC
Confidence 899999999999999987642 4679999999999999999999853 5668999999999988888888
Q ss_pred EEEEeCCCcccCC
Q psy6781 384 IYLIDCPGVVYDM 396 (534)
Q Consensus 384 i~liDtPGi~~p~ 396 (534)
+.|+||||+..+.
T Consensus 213 ~~liDtPG~~~~~ 225 (368)
T 3h2y_A 213 SSLYDTPGIINHH 225 (368)
T ss_dssp CEEEECCCBCCTT
T ss_pred eEEEeCCCcCcHH
Confidence 9999999998765
No 6
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.87 E-value=4.4e-22 Score=208.62 Aligned_cols=150 Identities=25% Similarity=0.374 Sum_probs=124.6
Q ss_pred HHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChh----hHHHHHHHHhcc--CC-eEEee
Q psy6781 237 LYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIW----VTQRWVAILSKE--YP-TIAFH 309 (534)
Q Consensus 237 l~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~----~~~~wl~~l~~~--~p-~v~f~ 309 (534)
+..+...+|+||+|+|+++|.++..+.+.+++. ++|+|+|+||+||++.. ....|+..+.+. +. ..+|.
T Consensus 65 L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~----~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 140 (369)
T 3ec1_A 65 LHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA----DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCL 140 (369)
T ss_dssp HHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCT----TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred HHHhhccCcEEEEEEECCCCCCchhhHHHHHhC----CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 444557889999999999999888888888763 68999999999998763 456777654332 21 35677
Q ss_pred eccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCC-----CceeeCCCCCceeeeEEEEeCccE
Q psy6781 310 ASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNK-----KVCKTAPVPGETKVWQYITLMRRI 384 (534)
Q Consensus 310 ~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~-----~~~~v~~~pgtTk~~~~~~~~~~i 384 (534)
+||.++.|++.|++.|.++.. ..+|+++|.||||||||||+|++. ..+.+++.||+|+....+.++.++
T Consensus 141 iSA~~g~gi~~L~~~I~~~~~------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~ 214 (369)
T 3ec1_A 141 VSAAKGIGMAKVMEAINRYRE------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGA 214 (369)
T ss_dssp CBTTTTBTHHHHHHHHHHHHT------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTC
T ss_pred EECCCCCCHHHHHHHHHhhcc------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCe
Confidence 899999999999999987653 457999999999999999999987 677899999999999888888899
Q ss_pred EEEeCCCcccCC
Q psy6781 385 YLIDCPGVVYDM 396 (534)
Q Consensus 385 ~liDtPGi~~p~ 396 (534)
.|+||||+..+.
T Consensus 215 ~liDtPG~~~~~ 226 (369)
T 3ec1_A 215 TLYDTPGIINHH 226 (369)
T ss_dssp EEEECCSCCCCS
T ss_pred EEEeCCCcCcHH
Confidence 999999998765
No 7
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=1.4e-20 Score=200.96 Aligned_cols=244 Identities=20% Similarity=0.278 Sum_probs=156.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||+.....+ .+..++..++...++++|+||+|+|+++++...+..+.+++.. .++|+|+|+||+|+
T Consensus 50 ~~~l~DT~G~~~~~~~-----~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~ 122 (439)
T 1mky_A 50 TFKLVDTCGVFDNPQD-----IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAEN 122 (439)
T ss_dssp EEEEEECTTTTSSGGG-----CCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCS
T ss_pred EEEEEECCCccccccc-----hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCC
Confidence 4567899997643211 2344566777888999999999999999888777777777764 47999999999999
Q ss_pred CChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhc--------cccceEEEEEecCCCchhHHHHhhh
Q psy6781 287 VPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHT--------ERKQISVGFIGYPNVGKSSIINALR 358 (534)
Q Consensus 287 v~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~--------~~~~~~v~vvG~pnvGKSSliN~L~ 358 (534)
........+.+.+...+ ...+.+||.++.|+++|++.|.+.++... ....++|+++|.||||||||+|+|+
T Consensus 123 ~~~~~~~~~~~~~~lg~-~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 123 LREFEREVKPELYSLGF-GEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp HHHHHHHTHHHHGGGSS-CSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCC-CCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHh
Confidence 64311112133332222 12467899999999999999877665322 1245899999999999999999999
Q ss_pred CCCceeeCCCCCceeeeEE--EEe-CccEEEEeCCCcccCCC------CCcc--hHHHHHccc---c---cc-ccCCCch
Q psy6781 359 NKKVCKTAPVPGETKVWQY--ITL-MRRIYLIDCPGVVYDMT------NVET--DTEKVLRGV---V---RV-ENIDDPV 420 (534)
Q Consensus 359 ~~~~~~v~~~pgtTk~~~~--~~~-~~~i~liDtPGi~~p~~------~~~~--~~e~vL~gv---v---~v-~~i~~~~ 420 (534)
+.....+++.||+|++... +.+ +..+.++||||+..... +... .....+..+ + .. +.....+
T Consensus 202 g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~ 281 (439)
T 1mky_A 202 NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD 281 (439)
T ss_dssp TSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred CCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH
Confidence 9988889999999987532 223 45788999999853220 0000 111122211 1 11 1111122
Q ss_pred hhHHHHHHhhccceeeehcCCCCCCC----HHHHHHHHHHHh
Q psy6781 421 QYIDAVLERIKKVHLVKTYGIDEWED----TEDFLKKLAFKW 458 (534)
Q Consensus 421 ~~i~~iL~r~~k~~l~~~ykId~~~d----~~efLe~la~k~ 458 (534)
..+...+.......+.+.||+|.... .+++.+.+++..
T Consensus 282 ~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 323 (439)
T 1mky_A 282 QRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKL 323 (439)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHh
Confidence 34555666777888899999987542 344555565544
No 8
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=7.9e-22 Score=210.44 Aligned_cols=242 Identities=19% Similarity=0.236 Sum_probs=146.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||+|+..... .+..++..++...+.++|+||+|+|++++....+..+.+++.. .++|+|+|+||+|
T Consensus 51 ~~~~l~DT~G~~~~~~------~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D 122 (436)
T 2hjg_A 51 YDFNLIDTGGIDIGDE------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLD 122 (436)
T ss_dssp SCCEEEC---------------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCC
T ss_pred ceEEEEECCCCCCcch------hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 3567889999753322 2345677777888999999999999999888766667777754 6899999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhc----cccceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHT----ERKQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~----~~~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+.+... ...+.+...+ ...+.+||.++.|+++|++.|.+.++... +...++|+++|.||||||||+|+|++..
T Consensus 123 ~~~~~~--~~~~~~~lg~-~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 123 NTEMRA--NIYDFYSLGF-GEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp C-------CCCSSGGGSS-CCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred Cccchh--hHHHHHHcCC-CCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 975421 1111222122 23577899999999999999988765322 2356899999999999999999999998
Q ss_pred ceeeCCCCCceeeeEE---EEeCccEEEEeCCCcccCCCCC---cch----HHHHHccc------ccc-ccCCCchhhHH
Q psy6781 362 VCKTAPVPGETKVWQY---ITLMRRIYLIDCPGVVYDMTNV---ETD----TEKVLRGV------VRV-ENIDDPVQYID 424 (534)
Q Consensus 362 ~~~v~~~pgtTk~~~~---~~~~~~i~liDtPGi~~p~~~~---~~~----~e~vL~gv------v~v-~~i~~~~~~i~ 424 (534)
...+++.||+|++... ...+..+.|+||||+....... +.. ....+..+ +.+ +........+.
T Consensus 200 ~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~ 279 (436)
T 2hjg_A 200 RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIA 279 (436)
T ss_dssp TEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHH
T ss_pred ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHH
Confidence 8889999999987532 2234579999999996543100 100 00122211 111 11111112233
Q ss_pred HHHHhhccceeeehcCCCCCCC----HHHHHHHHHHHh
Q psy6781 425 AVLERIKKVHLVKTYGIDEWED----TEDFLKKLAFKW 458 (534)
Q Consensus 425 ~iL~r~~k~~l~~~ykId~~~d----~~efLe~la~k~ 458 (534)
..+.....+.+.+.||+|.... .+++.+.+++..
T Consensus 280 ~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 280 GYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF 317 (436)
T ss_dssp HHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHC
T ss_pred HHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhc
Confidence 3444556778889999986542 345666666654
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.84 E-value=6e-21 Score=194.70 Aligned_cols=200 Identities=19% Similarity=0.195 Sum_probs=141.9
Q ss_pred ccccceE--EEecCccccccccccCCCCCC---CccCCHHHHHHhh--hcccccccccCceeEEecCCCCcCCCchhhhh
Q psy6781 154 RKHERVH--VLDTESYESVFGKKKQRKKAN---LSITNESELAALV--QTSNENYKEEKDFDIVRDNGGVTDAPRDWVMA 226 (534)
Q Consensus 154 ~~~~~~~--~~~~e~~~~~f~~~~~rkr~~---l~~gd~~~l~~~~--~~~~~~~~~~r~q~l~~Dt~Gi~~~~~~~l~~ 226 (534)
+.++..| .|. +++. .+.|+.+++-.. .+||||+.+.... ...+.++. +|.+.+.+.
T Consensus 13 ~~~~~~~~~~v~-~~~~-~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~g~I~~i~-er~~~l~r~-------------- 75 (302)
T 2yv5_A 13 DREAQMIGVYLF-EDGK-TYRGIPRGKVLKKTKIYAGDYVWGEVVDPNTFAIEEVE-ERKNLLIRP-------------- 75 (302)
T ss_dssp EEETTEEEEEET-TTCC-EEEEEECSSSTTSSCCCBTCEEEEEEEETTEEEEEEEC-CCSCEEETT--------------
T ss_pred EeeCCeEEEEEe-cCCE-EEEEEEcCCcccCCCCcCceEEEEEEccCCeEEEEeeC-ChHHHHhHH--------------
Confidence 3456677 665 4443 567777654322 7899999886432 22355555 555554431
Q ss_pred hhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hCCCCcEEEEEeCCCCCChhh---HHHHHHHHhcc
Q psy6781 227 AGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EKPHKHLFFILNKVDLVPIWV---TQRWVAILSKE 302 (534)
Q Consensus 227 a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~~~k~~IlVLNKiDLv~~~~---~~~wl~~l~~~ 302 (534)
.++++|+||+|+|+++|..+.+ .+++|+.. +..++|+|||+||+||+++.. ...|.+.+...
T Consensus 76 -------------~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 76 -------------KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA 141 (302)
T ss_dssp -------------EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred -------------HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence 3569999999999999975543 67788743 346899999999999998652 56677766543
Q ss_pred CCeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC-------ceeee
Q psy6781 303 YPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG-------ETKVW 375 (534)
Q Consensus 303 ~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg-------tTk~~ 375 (534)
. ..+|.+||+++.|+++|.+.+. +..++++|.+|||||||+|+|. .....++.+.. +|+..
T Consensus 142 g-~~~~~~SA~~g~gi~~L~~~l~----------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~ 209 (302)
T 2yv5_A 142 G-YDVLKVSAKTGEGIDELVDYLE----------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV 209 (302)
T ss_dssp T-CEEEECCTTTCTTHHHHHHHTT----------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE
T ss_pred C-CeEEEEECCCCCCHHHHHhhcc----------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE
Confidence 2 2467789999999999887764 4467899999999999999999 76666777664 56666
Q ss_pred EEEEeCccEEEEeCCCcccCC
Q psy6781 376 QYITLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 376 ~~~~~~~~i~liDtPGi~~p~ 396 (534)
..+......+++||||+....
T Consensus 210 ~~~~~~~~g~v~d~pg~~~~~ 230 (302)
T 2yv5_A 210 RLIPFGKGSFVGDTPGFSKVE 230 (302)
T ss_dssp EEEEETTTEEEESSCCCSSCC
T ss_pred EEEEcCCCcEEEECcCcCcCc
Confidence 666655678999999997433
No 10
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=2.2e-20 Score=200.41 Aligned_cols=241 Identities=20% Similarity=0.262 Sum_probs=151.9
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||+..... ....++..++...+.++|+||+|+|++.++...+..+.+++.. .++|+|+|+||+|
T Consensus 71 ~~~~liDT~G~~~~~~------~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 71 YDFNLIDTGGIDIGDE------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp SCCEEECCCC------------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-
T ss_pred ceEEEEECCCCCCcch------HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 4567889999753222 3456677778889999999999999999888777777777764 6899999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhc----cccceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHT----ERKQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~----~~~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+.... ..+.+.+...+. ..+.+||.++.|+++|++.+.+.++... ....++|+++|.||||||||+|+|++..
T Consensus 143 ~~~~~--~~~~e~~~lg~~-~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 143 NTEMR--ANIYDFYSLGFG-EPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp ----------CCSGGGSSS-SEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred chhhh--hhHHHHHHcCCC-ceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC
Confidence 97532 222223333322 3467899999999999999887654321 2357899999999999999999999988
Q ss_pred ceeeCCCCCceeee---EEEEeCccEEEEeCCCcccCCCCCc-ch---HH---HHHcc------ccc-cccCCCchhhHH
Q psy6781 362 VCKTAPVPGETKVW---QYITLMRRIYLIDCPGVVYDMTNVE-TD---TE---KVLRG------VVR-VENIDDPVQYID 424 (534)
Q Consensus 362 ~~~v~~~pgtTk~~---~~~~~~~~i~liDtPGi~~p~~~~~-~~---~e---~vL~g------vv~-v~~i~~~~~~i~ 424 (534)
.+.+++.||+|++. .+...+..+.|+||||+.......+ .+ .. ..+.. ++. .+.+......+.
T Consensus 220 ~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~ 299 (456)
T 4dcu_A 220 RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIA 299 (456)
T ss_dssp TEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHH
T ss_pred ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHH
Confidence 88999999999874 2222345799999999875431100 11 00 11111 111 111222234445
Q ss_pred HHHHhhccceeeehcCCCCCCC----HHHHHHHHHHH
Q psy6781 425 AVLERIKKVHLVKTYGIDEWED----TEDFLKKLAFK 457 (534)
Q Consensus 425 ~iL~r~~k~~l~~~ykId~~~d----~~efLe~la~k 457 (534)
..+.....+.+.+.||+|.... .+++.+.+.+.
T Consensus 300 ~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 300 GYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDH 336 (456)
T ss_dssp HHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence 5556667788889999996532 34555555544
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=3.5e-17 Score=166.60 Aligned_cols=144 Identities=24% Similarity=0.262 Sum_probs=106.8
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hCCCCcEEEEEeCCCCCChhh---HHHHHHHHhccCCeEEeeeccCCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EKPHKHLFFILNKVDLVPIWV---TQRWVAILSKEYPTIAFHASMTHP 315 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~~~k~~IlVLNKiDLv~~~~---~~~wl~~l~~~~p~v~f~~Sa~~~ 315 (534)
.+.++|++|+|+|+++|..+. ..+++++.. ...++|+|||+||+||.+... ...|.+.+... ...|.+||+++
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~--~~~~~~SAktg 157 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL--YPIVKTSAKTG 157 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT--SCEEECCTTTC
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh--CcEEEEECCCC
Confidence 467999999999999987554 356677642 225799999999999987644 45677766543 34677899999
Q ss_pred CChHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC-------ceeeeEEEEeCccEEEEe
Q psy6781 316 FGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG-------ETKVWQYITLMRRIYLID 388 (534)
Q Consensus 316 ~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg-------tTk~~~~~~~~~~i~liD 388 (534)
.|+++|.+.+. +-.++++|.||+|||||+|+|.+.....++.+.. +|+..+.+.+....+++|
T Consensus 158 ~gv~~lf~~l~----------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q 227 (301)
T 1u0l_A 158 MGIEELKEYLK----------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVD 227 (301)
T ss_dssp TTHHHHHHHHS----------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEES
T ss_pred cCHHHHHHHhc----------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEE
Confidence 99999887774 4467899999999999999999977666665553 555555555555679999
Q ss_pred CCCcccCC
Q psy6781 389 CPGVVYDM 396 (534)
Q Consensus 389 tPGi~~p~ 396 (534)
+||+....
T Consensus 228 ~p~~~~~~ 235 (301)
T 1u0l_A 228 TPGFANLE 235 (301)
T ss_dssp SCSSTTCC
T ss_pred CcCCCccC
Confidence 99987655
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.48 E-value=1.1e-15 Score=158.80 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=107.0
Q ss_pred CEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhc-cCCeEEeeeccCCCCChHHHHH
Q psy6781 245 DVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSK-EYPTIAFHASMTHPFGKGSIIN 323 (534)
Q Consensus 245 DvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~-~~p~v~f~~Sa~~~~gi~~Li~ 323 (534)
|.+..|++++.|+.+.++.+++++.....+++.+++|||+||+++.....|..+++. .++.-...+++....+.+.+.+
T Consensus 59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (357)
T 2e87_A 59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS 138 (357)
T ss_dssp HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 455567788888888889988887432245788899999999999988999999876 4332222223333334444544
Q ss_pred HHHHHhhh--------------hc-cccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeC---ccEE
Q psy6781 324 LLRQFSKL--------------HT-ERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM---RRIY 385 (534)
Q Consensus 324 ~L~~~~~~--------------~~-~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~---~~i~ 385 (534)
+++++... .. ....++|+++|+||||||||||+|++.. ..++..|++|+..+...+. ..+.
T Consensus 139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~ 217 (357)
T 2e87_A 139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQ 217 (357)
T ss_dssp HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEE
Confidence 43332111 01 2356899999999999999999999987 5678899999887665442 4589
Q ss_pred EEeCCCcccCC
Q psy6781 386 LIDCPGVVYDM 396 (534)
Q Consensus 386 liDtPGi~~p~ 396 (534)
++||||+....
T Consensus 218 l~Dt~G~~~~~ 228 (357)
T 2e87_A 218 IIDTPGLLDRP 228 (357)
T ss_dssp EEECTTTSSSC
T ss_pred EEeCCCccccc
Confidence 99999997654
No 13
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.07 E-value=1.2e-10 Score=118.56 Aligned_cols=111 Identities=24% Similarity=0.290 Sum_probs=73.3
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCCCCCc----chHHHHHcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDMTNVE----TDTEKVLRG 409 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~~~~~----~~~e~vL~g 409 (534)
...|+++|.||||||||+|+|++.+.+.+++.|++|++..... .+.++.|+||||+..+..... ......+.+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 3469999999999999999999999888899999998754322 245799999999986641100 011222332
Q ss_pred cc------cc-ccCCCchhhHHHHHHhh--ccceeeehcCCCCCCCH
Q psy6781 410 VV------RV-ENIDDPVQYIDAVLERI--KKVHLVKTYGIDEWEDT 447 (534)
Q Consensus 410 vv------~v-~~i~~~~~~i~~iL~r~--~k~~l~~~ykId~~~d~ 447 (534)
+. .+ +.+...+..+...+... ..+.+.+.||+|.....
T Consensus 87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP 133 (301)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCch
Confidence 21 11 11222233444556655 66788999999986543
No 14
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.05 E-value=8.7e-11 Score=123.39 Aligned_cols=60 Identities=30% Similarity=0.454 Sum_probs=49.9
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDMT 397 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~~ 397 (534)
..+|++||+||||||||+|+|++.+ ..++++|++|++..... .+.++.|+||||++....
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~ 134 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK 134 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch
Confidence 4689999999999999999999977 57899999999876432 356899999999986553
No 15
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.05 E-value=7.7e-10 Score=112.59 Aligned_cols=121 Identities=16% Similarity=0.262 Sum_probs=95.0
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHH-HHHHHhhCCCCcEEEEEeC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHI-ENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~l-e~~L~~~~~~k~~IlVLNK 283 (534)
..+.++.||||++..... ..++..+...+...+..+|+||+|+|+.++.+..+..+ .+.+.. .+.|+|+|+||
T Consensus 58 ~~~i~lvDTPG~~~~~~~----~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK 131 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKS----DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINK 131 (308)
T ss_dssp TEEEEEEECCCCCCCCTT----CHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEEC
T ss_pred CCeEEEEECcCCCccccc----hhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEEC
Confidence 567889999999865410 14678888889999999999999999998877655444 444543 47899999999
Q ss_pred CCCC-ChhhHHHHHHHHhccCC--eEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 284 VDLV-PIWVTQRWVAILSKEYP--TIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 284 iDLv-~~~~~~~wl~~l~~~~p--~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
+|++ +......+++.+.+.+. ..+|.+||.++.|++.|++.|...++.
T Consensus 132 ~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 132 IDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp GGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred ccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 9998 66666777777766553 457889999999999999999887653
No 16
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.05 E-value=7.6e-11 Score=120.04 Aligned_cols=147 Identities=22% Similarity=0.303 Sum_probs=91.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e--CccEEEEeCCCcccCCCCCc------chHHH
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L--MRRIYLIDCPGVVYDMTNVE------TDTEK 405 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~--~~~i~liDtPGi~~p~~~~~------~~~e~ 405 (534)
..-.|+++|.||||||||+|+|++.+.+.+++.|++|++..... . +.++.|+||||+..+..... .....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 45678999999999999999999999888999999998754332 2 45799999999986541000 01112
Q ss_pred HHccc------ccccc-CCCchhhH-HHHHHhhccceeeehcCCCCCC---CHHHHHHHHHHHhCCcc-------ccCcc
Q psy6781 406 VLRGV------VRVEN-IDDPVQYI-DAVLERIKKVHLVKTYGIDEWE---DTEDFLKKLAFKWGKIK-------KKGEP 467 (534)
Q Consensus 406 vL~gv------v~v~~-i~~~~~~i-~~iL~r~~k~~l~~~ykId~~~---d~~efLe~la~k~g~l~-------kgG~p 467 (534)
.+..+ +.+.. .......+ ...+.....+.+.+.||+|... ...+.++.++...+... +.| -
T Consensus 89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g-~ 167 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKG-A 167 (308)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTT-B
T ss_pred HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCC-C
Confidence 22221 11111 11112222 4455555678889999999762 23456677777765111 112 3
Q ss_pred hHHHHHHHHHHHHHcC
Q psy6781 468 VITASAKMVLNDWQRG 483 (534)
Q Consensus 468 D~~~aA~~vL~d~~~G 483 (534)
.++.....+...+..|
T Consensus 168 gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 168 NLDELVKTILKYLPEG 183 (308)
T ss_dssp SHHHHHHHHHHHSCBC
T ss_pred CHHHHHHHHHHhCccC
Confidence 5566666666666555
No 17
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.03 E-value=3.2e-10 Score=115.11 Aligned_cols=123 Identities=22% Similarity=0.204 Sum_probs=77.8
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--E-eCccEEEEeCCCcc-cCCC-----------CCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--T-LMRRIYLIDCPGVV-YDMT-----------NVET 401 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~-~~~~i~liDtPGi~-~p~~-----------~~~~ 401 (534)
...|+++|.||||||||+|+|++.+.+.+++.|++|++.... . .+.++.++||||+. .+.. ..-.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 447999999999999999999999988889999999865332 2 24578999999987 2210 0001
Q ss_pred hHHHHHccccccccCCCchhhHHHHHHhhccceeeehcCCCCCCCHHHH---HHHHHHHhCC
Q psy6781 402 DTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDF---LKKLAFKWGK 460 (534)
Q Consensus 402 ~~e~vL~gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~~ef---Le~la~k~g~ 460 (534)
.++.++.. +....+......+...+.....+.+...||+|...+..++ ++.++...|+
T Consensus 88 ~~D~vl~V-vd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 88 DVELVIFV-VEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNF 148 (301)
T ss_dssp CEEEEEEE-EETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC
T ss_pred cCCEEEEE-EeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCc
Confidence 11111111 1111133333445555555567888899999987644544 4444444443
No 18
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.01 E-value=2.8e-10 Score=108.10 Aligned_cols=110 Identities=22% Similarity=0.245 Sum_probs=74.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC-ceeeCCCCCceeeeEEEEeC----ccEEEEeCCCcccCCCCCcc------hHH
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLM----RRIYLIDCPGVVYDMTNVET------DTE 404 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~-~~~v~~~pgtTk~~~~~~~~----~~i~liDtPGi~~p~~~~~~------~~e 404 (534)
..++|+++|.+|||||||+|+|++.. .+.++..||+|+...+.... ..+.|+||||+..+...... ...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 46899999999999999999999987 56889999999987766655 68999999998765421111 011
Q ss_pred HHHcc------cc---ccc-cCCCchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 405 KVLRG------VV---RVE-NIDDPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 405 ~vL~g------vv---~v~-~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
..+.. ++ ... .+......+...+.....+.+.+.||+|...
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 22222 11 111 1111223344555556678888999999764
No 19
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.99 E-value=6.3e-10 Score=103.08 Aligned_cols=110 Identities=22% Similarity=0.329 Sum_probs=64.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC-ceeeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCCc--ch----HHHHHc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVE--TD----TEKVLR 408 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~-~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~~--~~----~e~vL~ 408 (534)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|........+..+.|+||||+..+..... .. ....+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYIT 101 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999876 567888999999888777788999999999865542110 00 112222
Q ss_pred cc------cccccCCCc----hhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 409 GV------VRVENIDDP----VQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 409 gv------v~v~~i~~~----~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
++ +-+-...++ ...+...+.....+.+.+.+|+|...
T Consensus 102 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 102 TREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred hhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 21 111111111 12234455556677888999998764
No 20
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.97 E-value=1.6e-09 Score=110.18 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=89.7
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
...+..+.||||++.+.. .++..+.......+..+|++|+|+|+.+++...+..+.+.+.....++|+|+|+||
T Consensus 53 ~~~~l~l~DTpG~~~~~~------~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK 126 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMD------ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNK 126 (301)
T ss_dssp TTEEEEEEECCCCCCCCS------HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEEC
T ss_pred CCcEEEEecCccccchhh------HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEEC
Confidence 356788999999987544 45677888888999999999999999988765555555555543347999999999
Q ss_pred CCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 284 VDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 284 iDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+||.+... ...+++.+ .. ....|.+||.++.|++.|++.|...++
T Consensus 127 ~Dl~~~~~~~~~~~~~~-~~-~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 127 LDAAKYPEEAMKAYHEL-LP-EAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp GGGCSSHHHHHHHHHHT-ST-TSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred cccCCchHHHHHHHHHh-cC-cCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 99987554 44555544 11 234688999999999999999987654
No 21
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.95 E-value=2.7e-10 Score=121.39 Aligned_cols=106 Identities=23% Similarity=0.231 Sum_probs=60.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCCCCCc-----chHHHHHccc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDMTNVE-----TDTEKVLRGV 410 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~~~~~-----~~~e~vL~gv 410 (534)
+|++||.||||||||+|+|++...+.+++.||+|++..+.. .+..+.|+||||+........ ......+.++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 68999999999999999999988778899999998754432 245799999999874321111 1123334332
Q ss_pred ccc-------ccCCCchhhHHHHHHhhccceeeehcCCCCC
Q psy6781 411 VRV-------ENIDDPVQYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 411 v~v-------~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
.-+ ..+...+..+..+|.+..++.+.+.||+|..
T Consensus 83 d~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 83 DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 211 1122223456667777788889999999964
No 22
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.95 E-value=3.3e-09 Score=97.44 Aligned_cols=121 Identities=22% Similarity=0.275 Sum_probs=77.1
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCC---cch----HHHHHc--
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNV---ETD----TEKVLR-- 408 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~---~~~----~e~vL~-- 408 (534)
++|+++|.+|||||||+|+|++.. +.++..||+|.....+... .+.++||||+....... ... ....+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 479999999999999999999876 5677889998877666655 89999999976433100 000 111111
Q ss_pred --cccccccCCCchhh------------------HHHHHHhhccceeeehcCCCCCCCHHHHHHHHHHHhCC
Q psy6781 409 --GVVRVENIDDPVQY------------------IDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFKWGK 460 (534)
Q Consensus 409 --gvv~v~~i~~~~~~------------------i~~iL~r~~k~~l~~~ykId~~~d~~efLe~la~k~g~ 460 (534)
+++-+-.+.++... +...+.....+.+.+.+|+|......+.++.++...|.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEV 151 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTC
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhh
Confidence 11111111222111 11223334567888999999876666667788877774
No 23
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.94 E-value=1.5e-09 Score=106.90 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=43.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCC-CceeeeEEEE---eCccEEEEeCCCcccCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVP-GETKVWQYIT---LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~p-gtTk~~~~~~---~~~~i~liDtPGi~~p~ 396 (534)
..++|+++|.||||||||+|+|++.....+...+ |+|+..+... .+..+.|+||||+..+.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTT
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCC
Confidence 5799999999999999999999998876655444 5776654332 24579999999997544
No 24
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.92 E-value=1.7e-09 Score=99.63 Aligned_cols=110 Identities=23% Similarity=0.350 Sum_probs=75.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCCcc------hHHHHHcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVET------DTEKVLRG 409 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~~~------~~e~vL~g 409 (534)
..++|+++|.+|||||||+|+|++.....+++.+|+|........+..+.++||||+......... .....+.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKN 101 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhc
Confidence 467899999999999999999999887788899999998887777889999999997654311100 01112222
Q ss_pred c------cccccCC----CchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 410 V------VRVENID----DPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 410 v------v~v~~i~----~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
+ +-+-... .....+...+.....+.+.+.+|+|...
T Consensus 102 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK 147 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 1 1111111 1123344556666778888999999753
No 25
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.89 E-value=9.7e-10 Score=118.77 Aligned_cols=62 Identities=24% Similarity=0.338 Sum_probs=30.2
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEe-CccEEEEeCCCcccCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITL-MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~-~~~i~liDtPGi~~p~ 396 (534)
+.+++|+++|.||||||||+|+|++...+.++++||+|++... +.+ +..+.|+||||+..+.
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG 295 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch
Confidence 3578999999999999999999999887889999999988642 233 3479999999997543
No 26
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.85 E-value=2.2e-08 Score=94.90 Aligned_cols=124 Identities=11% Similarity=0.046 Sum_probs=83.0
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||+.......-. ...-..++.........+|+||+|+|+.+++...+..+.+++.. .++|+|+|+||+
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~ 154 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAA-KAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKC 154 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTH-HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECG
T ss_pred CCcEEEEcCCCCCcccCChhh-HHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEecc
Confidence 345778999997654321110 01113344455555666999999999998776555555566654 578999999999
Q ss_pred CCCChhhHHHHH----HHHhcc------CCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 285 DLVPIWVTQRWV----AILSKE------YPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 285 DLv~~~~~~~wl----~~l~~~------~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
||.+........ +.+... ....+|.+|++++.|+++|++.|.+.++.
T Consensus 155 Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 155 DKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 999865433332 233331 33557888999999999999999887653
No 27
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.85 E-value=4.7e-10 Score=119.41 Aligned_cols=108 Identities=25% Similarity=0.330 Sum_probs=57.5
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCCCc----chHHHHHccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTNVE----TDTEKVLRGV 410 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~~~----~~~e~vL~gv 410 (534)
.+|++||.||||||||+|+|++...+.+++.||+|++..+... +..+.|+||||+........ ......+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999888889999999998776654 35799999999974331100 1112222221
Q ss_pred ------ccc-ccCCCchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 411 ------VRV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 411 ------v~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
+.. +.+...+..+..+|.+..++.+.+.||+|...
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 111 11222234556677777788899999999653
No 28
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.83 E-value=7.8e-09 Score=95.31 Aligned_cols=125 Identities=16% Similarity=0.020 Sum_probs=71.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---hh--CCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---RE--KPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~~--~~~k~~IlVL 281 (534)
...+.|+||...... .....+.++|++|+|+|+.++.... .+..++. .. ..++|+++|+
T Consensus 65 ~~~i~Dt~G~~~~~~--------------~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~ 128 (195)
T 1x3s_A 65 KLAIWDTAGQERFRT--------------LTPSYYRGAQGVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVG 128 (195)
T ss_dssp EEEEEEECSSGGGCC--------------SHHHHHTTCCEEEEEEETTCHHHHH--THHHHHHHHTTCCSCSCCEEEEEE
T ss_pred EEEEEeCCCchhhhh--------------hhHHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCcEEEEE
Confidence 456789999542211 1224567999999999998764322 2333332 21 2478999999
Q ss_pred eCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhH
Q psy6781 282 NKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSS 352 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSS 352 (534)
||+||.+..........+...+....|.+|++++.|+++|++.|.+.+....... --+.+|+||||
T Consensus 129 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~-----~~~~~n~gkSs 194 (195)
T 1x3s_A 129 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW-----ESENQNSGPSS 194 (195)
T ss_dssp ECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGGGT-----CC---------
T ss_pred ECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhhhh-----cccccCCCCCC
Confidence 9999965332222222333333445678899999999999998887654332111 12446999997
No 29
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.83 E-value=1.9e-09 Score=107.81 Aligned_cols=59 Identities=25% Similarity=0.420 Sum_probs=49.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~ 396 (534)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+..... .+..+.|+||||+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 5789999999999999999999987 68999999998764433 24579999999987544
No 30
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.80 E-value=1e-09 Score=117.42 Aligned_cols=108 Identities=24% Similarity=0.326 Sum_probs=60.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCCCcc----hHHHHHcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTNVET----DTEKVLRG 409 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~~~~----~~e~vL~g 409 (534)
..+|+++|.||||||||+|+|++...+.+++.||+|++..+... +..+.|+||||+......... .....+.+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 46899999999999999999999888889999999998776654 457999999998743211111 12222222
Q ss_pred c------ccc-ccCCCchhhHHHHHHhhccceeeehcCCCCC
Q psy6781 410 V------VRV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 410 v------v~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
+ +.. +.+...+..+..+|.+..++.+.+.||+|..
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 1 111 1222334556667777788888999999854
No 31
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.79 E-value=5e-09 Score=103.99 Aligned_cols=121 Identities=26% Similarity=0.238 Sum_probs=72.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e-CccEEEEeCCCcccCCCCCc--chHHH----HH--
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L-MRRIYLIDCPGVVYDMTNVE--TDTEK----VL-- 407 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~-~~~i~liDtPGi~~p~~~~~--~~~e~----vL-- 407 (534)
+|+++|.||||||||+|+|++.. ..+++.||+|.+..... . +..+.|+||||+........ +..+. .+
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 68999999999999999999986 57899999997654332 2 45789999999975541100 11121 22
Q ss_pred ccccccccC---CCc--hhhHHHHHHhhccceeeehcCCCCCCC--HHHHHHHHHHHhCC
Q psy6781 408 RGVVRVENI---DDP--VQYIDAVLERIKKVHLVKTYGIDEWED--TEDFLKKLAFKWGK 460 (534)
Q Consensus 408 ~gvv~v~~i---~~~--~~~i~~iL~r~~k~~l~~~ykId~~~d--~~efLe~la~k~g~ 460 (534)
..+..+-.+ .++ ..++...+.....+.+.+.|++|.... ....++.++...|.
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~ 141 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGC 141 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCS
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCC
Confidence 221111111 111 223344455566788888999874310 01124455665553
No 32
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.78 E-value=4.4e-08 Score=96.83 Aligned_cols=61 Identities=30% Similarity=0.404 Sum_probs=49.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e-CccEEEEeCCCcccCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L-MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~-~~~i~liDtPGi~~p~ 396 (534)
..++|+++|.+|||||||+|+|++...+.+++.+++|....... . +..+.|+||||+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 57999999999999999999999988878888999887654332 2 4479999999997544
No 33
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.77 E-value=4.2e-10 Score=117.64 Aligned_cols=147 Identities=19% Similarity=0.214 Sum_probs=71.3
Q ss_pred hhHHHHHHHHH--HHhhhcCEEEEEEeCCCCCCC-C-cHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccC
Q psy6781 228 GQSKRIWGELY--KVIDSSDVVVYVLDVRDPMGT-R-CAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEY 303 (534)
Q Consensus 228 ~lskr~~~el~--kvI~nsDvVL~VvDAR~Pl~s-~-~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~ 303 (534)
.|.+.+++.+. ++++.+|+||+|+|+|+|... . ...+.+ +... +| .+..|..+++..
T Consensus 69 ~q~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~la~-l~~~---~~--------------rl~~~~~l~~~~- 129 (364)
T 2qtf_A 69 RHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELAR-LKYE---LP--------------IIKETYTKSKIG- 129 (364)
T ss_dssp HHHHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHHHH-HHHH---HH--------------HHHHC--------
T ss_pred HHHHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHHHH-Hhhh---ch--------------hhhhhhHHHHhc-
Confidence 47788888887 699999999999999999655 2 222322 2210 11 113443333221
Q ss_pred CeEEeeeccCC--CCChH-------HHHHHHHHHhhhh------ccccceE-EEEEecCCCchhHHHHhhhCCCceeeCC
Q psy6781 304 PTIAFHASMTH--PFGKG-------SIINLLRQFSKLH------TERKQIS-VGFIGYPNVGKSSIINALRNKKVCKTAP 367 (534)
Q Consensus 304 p~v~f~~Sa~~--~~gi~-------~Li~~L~~~~~~~------~~~~~~~-v~vvG~pnvGKSSliN~L~~~~~~~v~~ 367 (534)
..+.|.-.... ..... .|...|.+..... ..+.++. |+++|+||||||||+|+|++... .+++
T Consensus 130 ~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~ 208 (364)
T 2qtf_A 130 EQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDT 208 (364)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC-------
T ss_pred CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-cccC
Confidence 11112100000 00011 1222222221110 1122344 99999999999999999999874 7788
Q ss_pred CCCceeee--EEEEe-CccEEEEeCCCccc
Q psy6781 368 VPGETKVW--QYITL-MRRIYLIDCPGVVY 394 (534)
Q Consensus 368 ~pgtTk~~--~~~~~-~~~i~liDtPGi~~ 394 (534)
.|++|.+. ..+.+ +..+.++||||++.
T Consensus 209 ~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 209 KLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp -----CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred CcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 89999764 33344 35789999999865
No 34
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.76 E-value=4.4e-08 Score=90.05 Aligned_cols=121 Identities=17% Similarity=0.093 Sum_probs=81.1
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||+........ ....-..++...+.....+|+|++|+|+..+.......+.+++.. .+.|+|+|+||+||
T Consensus 69 ~~~i~Dt~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 69 KYYFVDLPGYGYAKVSKK-ERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDK 145 (195)
T ss_dssp TEEEEECCCBSSSCCCHH-HHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGG
T ss_pred cEEEEECCCCccccCChh-hHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhc
Confidence 466899999765432111 011234455556666667799999999988766555555666654 47899999999999
Q ss_pred CChhhHHHHHHH----HhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 287 VPIWVTQRWVAI----LSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 287 v~~~~~~~wl~~----l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
.+........+. +........|.+|++++.|+++|++.|.+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 146 VKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 876544333332 22223345678899999999999999887553
No 35
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.75 E-value=8.3e-08 Score=88.67 Aligned_cols=120 Identities=15% Similarity=0.037 Sum_probs=80.1
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||+.......-. ...-..++...+.....+|++++|+|+.++....+..+.+++.. .+.|+++|+||+||
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl 146 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSE-REAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADK 146 (195)
T ss_dssp TEEEEECCCBCCCSSCHHH-HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGG
T ss_pred cEEEEECCCCCccccCHHH-HHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccc
Confidence 5678899997654321100 01123344455555555699999999998876655455566654 57899999999999
Q ss_pred CChhhHH----HHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 287 VPIWVTQ----RWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 287 v~~~~~~----~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
.+..... .+.+.+........|.+|++++.|+++|++.|.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 147 IPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp SCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 8765433 233334333345678889999999999999887654
No 36
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.75 E-value=3.7e-08 Score=98.07 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=38.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCC-------CCCceeeeEEEEe--Cc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAP-------VPGETKVWQYITL--MR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~-------~pgtTk~~~~~~~--~~---~i~liDtPGi~~ 394 (534)
..++|+++|.||+|||||+|+|++........ .++++.......+ .. .+.|+||||+..
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 35899999999999999999999887655432 3333333332222 22 789999999854
No 37
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.75 E-value=2.7e-08 Score=96.53 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=41.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCC--CceeeeEEEE--e-CccEEEEeCCCcccCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVP--GETKVWQYIT--L-MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~p--gtTk~~~~~~--~-~~~i~liDtPGi~~p~ 396 (534)
..++|+++|.+|||||||+|+|++.... .+..| ++|....... . +..+.|+||||+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTE 92 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC---
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCC
Confidence 5689999999999999999999997763 34444 6666654332 2 4589999999998654
No 38
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.75 E-value=8.9e-09 Score=101.03 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=48.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC-ceeeeEEE--E-eCccEEEEeCCCcccCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG-ETKVWQYI--T-LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg-tTk~~~~~--~-~~~~i~liDtPGi~~p~ 396 (534)
..++|+|+|.+|||||||+|+|++.....++..|+ +|+..... . .+..+.|+||||+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 56899999999999999999999988767666666 67654422 2 24589999999998654
No 39
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.74 E-value=2.1e-09 Score=116.42 Aligned_cols=61 Identities=28% Similarity=0.414 Sum_probs=50.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEe-CccEEEEeCCCcc-cCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITL-MRRIYLIDCPGVV-YDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~-~~~i~liDtPGi~-~p~ 396 (534)
.+++|+++|.||||||||+|+|++...+.++++||||++.. .+.+ +..+.|+||||+. ...
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN 306 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch
Confidence 46899999999999999999999988778999999998753 2233 4579999999997 543
No 40
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.69 E-value=6.3e-09 Score=92.77 Aligned_cols=107 Identities=26% Similarity=0.315 Sum_probs=60.8
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCCCcc----hHHHHHccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTNVET----DTEKVLRGV 410 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~~~~----~~e~vL~gv 410 (534)
.+|+++|.+|||||||+|+|.+.....++..|++|.+...... +..+.|+||||...... ... .....+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK-WEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS-CCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc-hHHHHHHHHHHHHHhC
Confidence 4789999999999999999998876667888888876543332 45799999999875331 111 111122221
Q ss_pred ------ccccc-CCCchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 411 ------VRVEN-IDDPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 411 ------v~v~~-i~~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
+.... +......+..++.....+.+.+.+|+|...
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 11111 222234455666666777888999999754
No 41
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.68 E-value=2.5e-08 Score=99.01 Aligned_cols=59 Identities=29% Similarity=0.401 Sum_probs=48.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~ 396 (534)
.++|+++|.||||||||+|+|++... .++..||+|....... .+..+.|+||||+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 64 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccc
Confidence 47899999999999999999999865 8899999997754332 24568999999987544
No 42
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.68 E-value=3.4e-09 Score=114.09 Aligned_cols=60 Identities=27% Similarity=0.434 Sum_probs=44.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEe-CccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITL-MRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~-~~~i~liDtPGi~~p 395 (534)
.+++|+++|.||||||||+|+|++...+.++++||+|++.. .+.+ +..+.|+||||+...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~ 285 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET 285 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccc
Confidence 57899999999999999999999987777899999998752 2223 457899999999654
No 43
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.68 E-value=2.2e-08 Score=92.12 Aligned_cols=60 Identities=28% Similarity=0.406 Sum_probs=48.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeC-ccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLM-RRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~-~~i~liDtPGi~~p 395 (534)
.+.+|+++|.||||||||+|+|++.....+++.||+|.+.. .+.++ ..+.++||||+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc
Confidence 46889999999999999999999987666788999997643 33333 36899999998643
No 44
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.67 E-value=1.8e-08 Score=101.32 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=25.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc-----eeeCCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV-----CKTAPVP 369 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~-----~~v~~~p 369 (534)
....|+|+|.||||||||+|+|++... ..+...|
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p 61 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRP 61 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------C
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeee
Confidence 457899999999999999999999876 3444556
No 45
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.67 E-value=2.9e-08 Score=98.49 Aligned_cols=60 Identities=37% Similarity=0.396 Sum_probs=49.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~ 396 (534)
..++|+++|.||||||||+|+|++... .+++.||+|.......+ +..+.|+||||.....
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccC
Confidence 468999999999999999999998764 58899999987544332 4479999999987544
No 46
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.66 E-value=1.9e-08 Score=102.07 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=85.3
Q ss_pred CceeEEecCCCCc-CCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 205 KDFDIVRDNGGVT-DAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 205 r~q~l~~Dt~Gi~-~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
..+..+.||||++ ... ..+++.+...+...+..+|++++|+|+.+ +......+.+.+.. .++|.|+|+||
T Consensus 55 ~~~i~~iDTpG~~~~~~------~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK 125 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEK------RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNK 125 (301)
T ss_dssp TEEEEEESSSSCCHHHH------HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEES
T ss_pred CeeEEEEECcCCCccch------hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEEC
Confidence 4577889999975 211 12444555666778899999999999987 55444445455542 57999999999
Q ss_pred CCCCC-hhhHHHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 284 VDLVP-IWVTQRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 284 iDLv~-~~~~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+|+.. ......+++.+.+.+. ...+.+|+.++.|++.|++.|...++
T Consensus 126 ~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 126 VDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred cccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 99987 4555666666666544 35788999999999999999987654
No 47
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.63 E-value=5.7e-08 Score=96.35 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=50.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDM 396 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~ 396 (534)
..++|+++|.+|||||||+|+|++.....+++.+|+|.....+.. +..+.|+||||+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 578999999999999999999999888788899998876543332 3479999999987543
No 48
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.60 E-value=3.6e-08 Score=92.56 Aligned_cols=59 Identities=37% Similarity=0.607 Sum_probs=39.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC-ceeeCCCCCceeeeEEEEeCccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~-~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~ 394 (534)
.+..|+++|.+|||||||+|+|++.. .+.+++.+|+|.....+.+..++.++||||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 57889999999999999999999976 567788999998765555556899999999864
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.60 E-value=1.6e-07 Score=84.23 Aligned_cols=119 Identities=14% Similarity=0.015 Sum_probs=58.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeC--ccEEEEeCCCcccCCCCCcchHHHHHc---ccc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM--RRIYLIDCPGVVYDMTNVETDTEKVLR---GVV 411 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~--~~i~liDtPGi~~p~~~~~~~~e~vL~---gvv 411 (534)
.++|+++|.+|||||||+|+|.+.....+.+.+|+|........+ ..+.++||||...... .....+. +++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~~~~~~~~i 77 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW----LPGHCMAMGDAYV 77 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC-------------------CCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchh----hhhhhhhhCCEEE
Confidence 468999999999999999999998877788888988764333222 2578999999754321 1111121 112
Q ss_pred ccccCCCch------hhHHHHHHh---hccceeeehcCCCCCCC---HHHHHHHHHHHhC
Q psy6781 412 RVENIDDPV------QYIDAVLER---IKKVHLVKTYGIDEWED---TEDFLKKLAFKWG 459 (534)
Q Consensus 412 ~v~~i~~~~------~~i~~iL~r---~~k~~l~~~ykId~~~d---~~efLe~la~k~g 459 (534)
-+-.+.++. .++..++.. ...+.+.+.+|+|.... ..+....++...+
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 137 (166)
T 3q72_A 78 IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD 137 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC
Confidence 122223332 122223222 23567888899996532 2334456666555
No 50
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.60 E-value=1.6e-08 Score=106.79 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=30.3
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE-----------------------eC----ccEEEEeCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT-----------------------LM----RRIYLIDCP 390 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~-----------------------~~----~~i~liDtP 390 (534)
++|++||.||||||||+|+|++.. +.+++.|++|++..... .. ..+.|+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999988 78899999998643321 01 258999999
Q ss_pred CcccC
Q psy6781 391 GVVYD 395 (534)
Q Consensus 391 Gi~~p 395 (534)
|+...
T Consensus 80 G~~~~ 84 (397)
T 1wxq_A 80 GLVPG 84 (397)
T ss_dssp -----
T ss_pred Ccccc
Confidence 99753
No 51
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.59 E-value=6e-08 Score=89.65 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHhhhh---ccccceEEEEEecCCCchhHHHHhhhCCCcee--eCCCCCceeeeEEEEeCccEEEEeCC
Q psy6781 316 FGKGSIINLLRQFSKLH---TERKQISVGFIGYPNVGKSSIINALRNKKVCK--TAPVPGETKVWQYITLMRRIYLIDCP 390 (534)
Q Consensus 316 ~gi~~Li~~L~~~~~~~---~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~--v~~~pgtTk~~~~~~~~~~i~liDtP 390 (534)
.....+.+.|.++.... .....++|+++|.+|||||||+|+|.+..... ++..|++|... ....+.++|||
T Consensus 24 ~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~ 99 (193)
T 2ged_A 24 RKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFP 99 (193)
T ss_dssp TBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEET
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECC
Confidence 34556666666554321 12456899999999999999999999865322 23344444332 34578999999
Q ss_pred CcccCCCCCcchHHHH---HccccccccCC-Cch------hhHHHHHHhh------ccceeeehcCCCCCC--CHHHHHH
Q psy6781 391 GVVYDMTNVETDTEKV---LRGVVRVENID-DPV------QYIDAVLERI------KKVHLVKTYGIDEWE--DTEDFLK 452 (534)
Q Consensus 391 Gi~~p~~~~~~~~e~v---L~gvv~v~~i~-~~~------~~i~~iL~r~------~k~~l~~~ykId~~~--d~~efLe 452 (534)
|............... ..+++=+-.+. ++. .++..++... ..+.+.+.+|+|... ...++.+
T Consensus 100 G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp TCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred CCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 9865431111111111 11221111122 221 2233333322 456788899999753 4566666
Q ss_pred HHHHHhCC
Q psy6781 453 KLAFKWGK 460 (534)
Q Consensus 453 ~la~k~g~ 460 (534)
.+.+..+.
T Consensus 180 ~l~~~l~~ 187 (193)
T 2ged_A 180 ALESEIQK 187 (193)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 52
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.57 E-value=6.1e-08 Score=97.14 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=48.3
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe--CccEEEEeCCCcccC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL--MRRIYLIDCPGVVYD 395 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~--~~~i~liDtPGi~~p 395 (534)
.++|+++|.||||||||+|+|++.. ..+++.||+|.......+ +..+.++||||....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM 62 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCcc
Confidence 5789999999999999999999876 468899999987554444 457999999998754
No 53
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.57 E-value=6.8e-08 Score=100.12 Aligned_cols=119 Identities=23% Similarity=0.316 Sum_probs=74.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEeC--ccEEEEeCCCcccCCCCCcchHHHHHcc-----
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLM--RRIYLIDCPGVVYDMTNVETDTEKVLRG----- 409 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~~--~~i~liDtPGi~~p~~~~~~~~e~vL~g----- 409 (534)
.|+|+|+||||||||||+|++.+. .+++.|++|....+ +.++ ..+.|+||||+..............++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 689999999999999999998764 67889999987543 3333 5799999999875432222222223322
Q ss_pred ----ccccccC--CCchhhHH---HHHHh-----hccceeeehcCCCCCCCHHHHHHHHHHHhC
Q psy6781 410 ----VVRVENI--DDPVQYID---AVLER-----IKKVHLVKTYGIDEWEDTEDFLKKLAFKWG 459 (534)
Q Consensus 410 ----vv~v~~i--~~~~~~i~---~iL~r-----~~k~~l~~~ykId~~~d~~efLe~la~k~g 459 (534)
++.+... .++.+.+. ..|.. ...+.+.+.||+|... ..+.++.++...+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~-~~e~~~~l~~~l~ 301 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE-AAENLEAFKEKLT 301 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT-HHHHHHHHHHHCC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC-CHHHHHHHHHHhh
Confidence 2222221 23333222 23333 2466788999999764 3345566666554
No 54
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.54 E-value=5.9e-08 Score=106.59 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=33.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce--eeCCCCCceee
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC--KTAPVPGETKV 374 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~--~v~~~pgtTk~ 374 (534)
....|+|+|.+|||||||||+|++...+ .++..|+||+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~ 104 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF 104 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence 4578999999999999999999998875 58888888764
No 55
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.53 E-value=1.2e-07 Score=85.46 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=41.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|.+.....+.+.+|+|.....+..+. .+.++||||...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 46899999999999999999999987777777788876544444443 578999999754
No 56
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.53 E-value=8.1e-08 Score=108.29 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=34.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGE 371 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgt 371 (534)
..++|+|+|.||+|||||||+|++...+.++..|+|
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 679999999999999999999999998899999988
No 57
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.52 E-value=3.4e-07 Score=84.05 Aligned_cols=112 Identities=16% Similarity=0.079 Sum_probs=74.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hCCCCcEEEEEeCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EKPHKHLFFILNKVD 285 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~~~k~~IlVLNKiD 285 (534)
...+.||||...... ..........+..+.++|++|+|+|+.++.......+...+.. ...++|+|+|+||+|
T Consensus 53 ~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 53 PLHIIDTAGLREASD------EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp EEEEEECCCCSCCSS------HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred EEEEEECCCcccchh------HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence 356789999864322 1222234455667889999999999998877654434333433 224689999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|.+... .+........|.+||+++.|+++|.+.|.+.+.
T Consensus 127 l~~~~~------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 127 ITGETL------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp HHCCCC------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred CCcchh------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 954210 011222345678899999999999998876543
No 58
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.51 E-value=1.8e-07 Score=83.21 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=74.8
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||...... ....+.......+..+|++|+|+|+.+++......+.+++.. .+.|+++|+||+|
T Consensus 49 ~~~~l~Dt~G~~~~~~-------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D 119 (161)
T 2dyk_A 49 GRFLLVDTGGLWSGDK-------WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVD 119 (161)
T ss_dssp EEEEEEECGGGCSSSS-------CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCC
T ss_pred ceEEEEECCCCCCccc-------hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcc
Confidence 3566889999754321 122233445567889999999999998866555556666654 4789999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
+.+... ....+.+......|.+|++++.|+++|.+.|.+.
T Consensus 120 l~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 120 DPKHEL---YLGPLYGLGFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp SGGGGG---GCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred cccchH---hHHHHHhCCCCCeEEEecccCCChHHHHHHHHHh
Confidence 976521 1112222111135788999999999999888754
No 59
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.49 E-value=5.5e-08 Score=102.63 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=50.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEeC------------------ccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLM------------------RRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~~------------------~~i~liDtPGi~~p 395 (534)
.+..|+++|.||||||||||+|++...+.+++.|++|..+.. +..+ ..+.++||||++..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 468899999999999999999999887789999999986432 2222 25899999999865
Q ss_pred C
Q psy6781 396 M 396 (534)
Q Consensus 396 ~ 396 (534)
.
T Consensus 99 ~ 99 (392)
T 1ni3_A 99 A 99 (392)
T ss_dssp C
T ss_pred C
Confidence 4
No 60
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.49 E-value=7.2e-08 Score=86.67 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=41.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|.+.......+..|.+... +......+.++||||...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVET-VTYKNLKFQVWDLGGLTS 63 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE-EEETTEEEEEEEECCCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEE-EEECCEEEEEEECCCChh
Confidence 5689999999999999999999876654444444433221 111245789999999753
No 61
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.49 E-value=4.4e-08 Score=103.49 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=33.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--Ee------------------CccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TL------------------MRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~------------------~~~i~liDtPGi~~p 395 (534)
.+.+|++||.||||||||+|+|++... .++++|++|...... .+ +..+.|+||||+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 467899999999999999999999876 889999999764322 11 224999999999865
Q ss_pred C
Q psy6781 396 M 396 (534)
Q Consensus 396 ~ 396 (534)
.
T Consensus 100 a 100 (396)
T 2ohf_A 100 A 100 (396)
T ss_dssp -
T ss_pred c
Confidence 4
No 62
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.49 E-value=4.1e-08 Score=102.63 Aligned_cols=58 Identities=29% Similarity=0.422 Sum_probs=41.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEeC------------------ccEEEEeCCCcccC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLM------------------RRIYLIDCPGVVYD 395 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~~------------------~~i~liDtPGi~~p 395 (534)
+++|++||.||||||||+|+|++.. +.+++.|++|..... +..+ ..+.|+||||+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 4689999999999999999999877 678899999876432 2222 36999999999753
No 63
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=8.4e-07 Score=81.75 Aligned_cols=115 Identities=18% Similarity=0.149 Sum_probs=66.6
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCCcchHHHHHccccc--
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVR-- 412 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~-- 412 (534)
+..++|+++|.+|||||||+|+|.+.....+.+..|.+... ...-+..+.++||||..... ......+.++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE-IVINNTRFLMWDIGGQESLR----SSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEE-EEETTEEEEEEECCC----C----GGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEE-EEECCEEEEEEECCCCHhHH----HHHHHHhcCCCEEE
Confidence 46799999999999999999999976655666666644332 22224578999999985322 112233332211
Q ss_pred -cccCCCc------hhhHHHHHHh---hccceeeehcCCCCCC--CHHHHHHHH
Q psy6781 413 -VENIDDP------VQYIDAVLER---IKKVHLVKTYGIDEWE--DTEDFLKKL 454 (534)
Q Consensus 413 -v~~i~~~------~~~i~~iL~r---~~k~~l~~~ykId~~~--d~~efLe~l 454 (534)
+-.+.++ ..++..++.. ...+.+.+.+|+|... +.+++.+.+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 142 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL 142 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence 1112222 1233334432 3456788999999764 244544444
No 64
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.47 E-value=1.4e-07 Score=100.43 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=68.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--eC-c-cEEEEeCCCcccCCCCCcch---HHHHHc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--LM-R-RIYLIDCPGVVYDMTNVETD---TEKVLR 408 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~~-~-~i~liDtPGi~~p~~~~~~~---~e~vL~ 408 (534)
..++|+|+|.+|+|||||+|+|++.....++..+|+|.+..... .. . .+.|+||||+.......... ....+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 46899999999999999999999988777889999998754433 22 2 79999999997543111111 223333
Q ss_pred ccccc----c-cCCCchhhHHHHHHhhccceeeehcCCCCCCCH-HHHHHHHHHHhC
Q psy6781 409 GVVRV----E-NIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDT-EDFLKKLAFKWG 459 (534)
Q Consensus 409 gvv~v----~-~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~-~efLe~la~k~g 459 (534)
++..+ + ........+...+.....+.+.+.||+|..... .+..+.++...|
T Consensus 113 ~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g 169 (423)
T 3qq5_A 113 RADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYE 169 (423)
T ss_dssp SCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTT
T ss_pred cCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcC
Confidence 32111 1 111223344455666678889999999976432 244555554444
No 65
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.47 E-value=1.5e-07 Score=104.23 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=43.8
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCce-eeCCCC-Cceee-eEEE-----EeCccEEEEeCCCcccCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVP-GETKV-WQYI-----TLMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~p-gtTk~-~~~~-----~~~~~i~liDtPGi~~p~ 396 (534)
.+.+.|+|+|.||||||||||+|++...+ .++..+ ++|+. +.|. ..+..+.|+||||+..+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 35688999999999999999999998753 333222 33333 2331 124579999999998654
No 66
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.46 E-value=2e-07 Score=94.59 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=74.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe----CccEEEEeCCCcccCCC-CCcchHHHHHccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL----MRRIYLIDCPGVVYDMT-NVETDTEKVLRGV 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~----~~~i~liDtPGi~~p~~-~~~~~~e~vL~gv 410 (534)
..++|+++|.||||||||+|+|.+.....+++.+|+|....+... ...+.++||||...... .........+.++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 368999999999999999999998765566778899987655432 23689999999753200 0011223333332
Q ss_pred cc---cccCCCch--hhH---HHHHHhh-----ccceeeehcCCCCCC--CHH-------HHHHHHHHHhC
Q psy6781 411 VR---VENIDDPV--QYI---DAVLERI-----KKVHLVKTYGIDEWE--DTE-------DFLKKLAFKWG 459 (534)
Q Consensus 411 v~---v~~i~~~~--~~i---~~iL~r~-----~k~~l~~~ykId~~~--d~~-------efLe~la~k~g 459 (534)
.. +-.+.++. +.+ ...+..+ ..+.+.+.+|+|... ... +-+..++...|
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 11 11122221 112 2223222 467788889999765 222 34566677666
No 67
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.45 E-value=1.5e-07 Score=85.41 Aligned_cols=58 Identities=34% Similarity=0.475 Sum_probs=40.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEe-CccEEEEeCCCcccC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITL-MRRIYLIDCPGVVYD 395 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~-~~~i~liDtPGi~~p 395 (534)
.++|+++|.||||||||+|+|.+... .++..||+|..... +.. +..+.++||||....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 46899999999999999999998653 46778888765322 222 457899999998643
No 68
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.45 E-value=7.1e-07 Score=81.43 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=65.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeCc---cEEEEeCCCcccCCCCCcchHHHHHcc-
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRG- 409 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~g- 409 (534)
..++|+++|.+|||||||+|+|.+... ....++++.... .+..+. .+.|+||||..... ......+.+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~ 76 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----AMRDQYMRTG 76 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---C----TTHHHHHHHC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHH----HHHHHHHhcC
Confidence 468999999999999999999997653 334445444322 222332 36789999965433 122233322
Q ss_pred --ccccccCCCch------hhHHHHHHh---hccceeeehcCCCCCC--CHHHHHHHHHHHhC
Q psy6781 410 --VVRVENIDDPV------QYIDAVLER---IKKVHLVKTYGIDEWE--DTEDFLKKLAFKWG 459 (534)
Q Consensus 410 --vv~v~~i~~~~------~~i~~iL~r---~~k~~l~~~ykId~~~--d~~efLe~la~k~g 459 (534)
++-+-.+.++. .++..++.. ...+.+.+.+|+|... ...+.+..++...|
T Consensus 77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 139 (189)
T 4dsu_A 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG 139 (189)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC
Confidence 22222222321 122222222 2456788899999653 23345566666665
No 69
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.45 E-value=1.9e-07 Score=89.58 Aligned_cols=59 Identities=27% Similarity=0.358 Sum_probs=43.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p 395 (534)
..++|+|+|.+|||||||+|+|++.... +++.+++|+....... ...+.|+||||....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence 5789999999999999999999998754 6788998887654432 347899999999653
No 70
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.44 E-value=2.4e-07 Score=85.02 Aligned_cols=59 Identities=34% Similarity=0.435 Sum_probs=46.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEE--Ee-CccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TL-MRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~--~~-~~~i~liDtPGi~~p 395 (534)
..++|+++|.+|||||||+|+|++.. ..++..||+|.+.... .. +..+.++||||....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 35789999999999999999999865 4677789988764432 22 457899999998643
No 71
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.44 E-value=2.4e-07 Score=92.10 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=29.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-----eeCCCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-----KTAPVPG 370 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-----~v~~~pg 370 (534)
..++|+++|.||||||||+|+|++.... .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 4679999999999999999999998764 4555665
No 72
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.44 E-value=1.2e-06 Score=79.83 Aligned_cols=145 Identities=18% Similarity=0.167 Sum_probs=72.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC-ceeeCCCCCceeeeEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHcccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGVV 411 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~-~~~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gvv 411 (534)
..++|+++|.+|||||||+|+|.+.. .....+..+.+. ...+..+. .+.|+||||............ .-..+++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~-~~~~~~i 82 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS-IDINGYI 82 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGT-TTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHH-hcCCEEE
Confidence 46899999999999999999999544 222333333333 22233332 568999999754321000000 0011111
Q ss_pred ccccCCCch------hhHHHHHHh---hccceeeehcCCCCCCC---HHHHHHHHHHHhCCcc----ccCcchHHHHHHH
Q psy6781 412 RVENIDDPV------QYIDAVLER---IKKVHLVKTYGIDEWED---TEDFLKKLAFKWGKIK----KKGEPVITASAKM 475 (534)
Q Consensus 412 ~v~~i~~~~------~~i~~iL~r---~~k~~l~~~ykId~~~d---~~efLe~la~k~g~l~----kgG~pD~~~aA~~ 475 (534)
-+-.+.++. .++..++.. ...+.+.+.+|+|.... ..+.+..+++..|... ....-++..+-..
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 111122221 122223332 24567888999996421 2344566676666311 0111244555555
Q ss_pred HHHHHHc
Q psy6781 476 VLNDWQR 482 (534)
Q Consensus 476 vL~d~~~ 482 (534)
+++....
T Consensus 163 l~~~~~~ 169 (181)
T 3t5g_A 163 IILEAEK 169 (181)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5555543
No 73
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.43 E-value=1e-06 Score=82.45 Aligned_cols=119 Identities=21% Similarity=0.199 Sum_probs=65.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGV 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gv 410 (534)
..++|+|+|.+|||||||+|+|++... .....|.++... ..+.++. .+.|+||||..... . .....+..+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~--~~~~~~~~~ 93 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR--T--ITTAYYRGA 93 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT--C--CCHHHHTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH--H--HHHHHhccC
Confidence 478999999999999999999997653 233344444333 2333333 68999999975432 1 122233222
Q ss_pred c---ccccCCCch------hhHHHHHHhh--ccceeeehcCCCCCCC--HHHHHHHHHHHhC
Q psy6781 411 V---RVENIDDPV------QYIDAVLERI--KKVHLVKTYGIDEWED--TEDFLKKLAFKWG 459 (534)
Q Consensus 411 v---~v~~i~~~~------~~i~~iL~r~--~k~~l~~~ykId~~~d--~~efLe~la~k~g 459 (534)
. -+-.+.++. .++..+.... ..+.+.+.+|+|.... ..+....++...|
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 155 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG 155 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC
Confidence 1 111122221 2222222222 3567888999997321 2234455666655
No 74
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.43 E-value=5.7e-07 Score=99.73 Aligned_cols=137 Identities=16% Similarity=0.083 Sum_probs=92.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
..-+.||||..+ + ..++...+..+|.+|+|+||.+............+. ..++|+|+|+||+||
T Consensus 72 ~l~liDTPGh~d-----F---------~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~--~~~ipiIvViNKiDl 135 (599)
T 3cb4_D 72 QLNFIDTPGHVD-----F---------SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM--EMDLEVVPVLNKIDL 135 (599)
T ss_dssp EEEEEECCCCGG-----G---------HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH--HTTCEEEEEEECTTS
T ss_pred EEEEEECCCchH-----H---------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--HCCCCEEEeeeccCc
Confidence 456889999532 1 234556678899999999998876553322222222 257899999999999
Q ss_pred CChh---hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhcc--ccceEEEEEec---CCCchhHHHHhhh
Q psy6781 287 VPIW---VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTE--RKQISVGFIGY---PNVGKSSIINALR 358 (534)
Q Consensus 287 v~~~---~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~--~~~~~v~vvG~---pnvGKSSliN~L~ 358 (534)
.+.. ....|.+.+.- .+..++.+|++++.|++.|++.|.+.++.... ...+...++.. |++|+.++++.+.
T Consensus 136 ~~a~~~~v~~ei~~~lg~-~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~s 214 (599)
T 3cb4_D 136 PAADPERVAEEIEDIVGI-DATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKN 214 (599)
T ss_dssp TTCCHHHHHHHHHHHTCC-CCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEE
T ss_pred ccccHHHHHHHHHHHhCC-CcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEe
Confidence 7632 23344444321 11236778999999999999999887765432 23445445454 8999999998887
Q ss_pred CC
Q psy6781 359 NK 360 (534)
Q Consensus 359 ~~ 360 (534)
|.
T Consensus 215 G~ 216 (599)
T 3cb4_D 215 GT 216 (599)
T ss_dssp SC
T ss_pred CE
Confidence 74
No 75
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.42 E-value=1.3e-06 Score=83.59 Aligned_cols=120 Identities=12% Similarity=0.101 Sum_probs=73.0
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhhCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRREKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~~~~k~~IlVLN 282 (534)
....+.||||..+...+. .....+..+......+|++|+|+|+.++.+........+ +.....++|+|+|+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~-----~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~n 150 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFEN-----RNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFN 150 (228)
T ss_dssp EEEEEEECTTTTTSCGGG-----CCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEE
T ss_pred CeEEEEECCCCcCcccch-----hhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEe
Confidence 356688999985422110 011111222334678899999999998866542222223 332224799999999
Q ss_pred CCCCCChhhH----HHHHHHHhccCC--eEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWVT----QRWVAILSKEYP--TIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~~----~~wl~~l~~~~p--~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+.... ....+.+..... ...|.+|++++.|+++|.+.|.+.+.
T Consensus 151 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 151 KIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHH
Confidence 9999864321 122333333332 55788999999999999988876554
No 76
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=4.8e-07 Score=84.03 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=45.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++... ..+.+.+|+|.....+... ..+.|+||||..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 578999999999999999999997653 2456677877655544443 368999999964
No 77
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.42 E-value=6.5e-07 Score=79.96 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=41.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
.++|+++|.+|||||||+|+|.+.... ...+..|.+.....+..+. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 578999999999999999999976532 2334455554444444433 68999999964
No 78
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.41 E-value=2e-06 Score=81.14 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=79.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeeeEEEEeC----ccEEEEeCCCcccCCCCCcchHHHHHccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVWQYITLM----RRIYLIDCPGVVYDMTNVETDTEKVLRGV 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~~~~~~~----~~i~liDtPGi~~p~~~~~~~~e~vL~gv 410 (534)
..++|+++|.+|||||||+|+|++... ....+..|++.....+... ..+.|+||||..... . .....+.++
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~--~~~~~~~~~ 85 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA--V--LKDVYYIGA 85 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS--C--CCHHHHTTC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc--h--HHHHHhhcC
Confidence 468999999999999999999997543 3334555555443333332 248999999975433 1 112233221
Q ss_pred ---cccccCCCch--hhH----HHHHHhh--ccceeeehcCCCCCCC---HHHHHHHHHHHhCCcc----ccCcchHHHH
Q psy6781 411 ---VRVENIDDPV--QYI----DAVLERI--KKVHLVKTYGIDEWED---TEDFLKKLAFKWGKIK----KKGEPVITAS 472 (534)
Q Consensus 411 ---v~v~~i~~~~--~~i----~~iL~r~--~k~~l~~~ykId~~~d---~~efLe~la~k~g~l~----kgG~pD~~~a 472 (534)
+-+-.+.++. +.+ ..+.... ..+.+.+.+|+|.... ..+....++...+.-. ....-++..+
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 1111122221 112 2222222 3567888999997542 1233444444444210 1111245556
Q ss_pred HHHHHHHHHcCCCCcc
Q psy6781 473 AKMVLNDWQRGKLPYY 488 (534)
Q Consensus 473 A~~vL~d~~~Gkl~~~ 488 (534)
-..+...+....-...
T Consensus 166 ~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 166 FLHLARIFTGRPDLIF 181 (218)
T ss_dssp HHHHHHHHHCCTTCCB
T ss_pred HHHHHHHHhccccccc
Confidence 6666777666554443
No 79
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.41 E-value=8.3e-07 Score=79.25 Aligned_cols=59 Identities=25% Similarity=0.221 Sum_probs=38.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|.+..... ..+..|.+.....+..+ ..+.|+||||...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 46899999999999999999999764321 12222222222223333 2689999999654
No 80
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.40 E-value=1e-06 Score=92.64 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=78.6
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC-CcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT-RCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s-~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
....+.||||..+ +...+...+..+|++|+|+||+++... ........+.. ...+|+|+|+||+
T Consensus 75 ~~~~iiDtPGh~~--------------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~~~~iivviNK~ 139 (403)
T 3sjy_A 75 RRISFIDAPGHEV--------------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVKNLIIVQNKV 139 (403)
T ss_dssp EEEEEEECCCCGG--------------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECG
T ss_pred ceEEEEECCCcHH--------------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cCCCCEEEEEECc
Confidence 4567899999421 223455667899999999999987532 11112222222 1236899999999
Q ss_pred CCCChhhHHHHHHHHhc----cC--CeEEeeeccCCCCChHHHHHHHHHHhhhhcc--ccceEEEEEe
Q psy6781 285 DLVPIWVTQRWVAILSK----EY--PTIAFHASMTHPFGKGSIINLLRQFSKLHTE--RKQISVGFIG 344 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~----~~--p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~--~~~~~v~vvG 344 (534)
||++......+.+.+.+ .. ...+|.+|+.++.|++.|++.|.++++.... ...+...+..
T Consensus 140 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~ 207 (403)
T 3sjy_A 140 DVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIR 207 (403)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEE
T ss_pred cccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEE
Confidence 99987644443333322 11 2346788999999999999999986654321 2344544443
No 81
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.40 E-value=2.5e-07 Score=85.03 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=45.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|.+.....+.+..|.+... ...-+..+.|+||||...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE-IVINNTRFLMWDIGGQES 77 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEE-EEETTEEEEEEEESSSGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEE-EEECCEEEEEEECCCCHh
Confidence 5789999999999999999999998777777777865432 222345789999999753
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.39 E-value=1.3e-06 Score=80.73 Aligned_cols=111 Identities=21% Similarity=0.268 Sum_probs=72.4
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hC-----------
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EK----------- 272 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~----------- 272 (534)
.....+.||||...... +| ...+.++|++|+|+|+.++.... .+..++.. ..
T Consensus 62 ~~~~~i~Dt~G~~~~~~-----------~~---~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~ 125 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRG-----------LW---ETYYDNIDAVIFVVDSSDHLRLC--VVKSEIQAMLKHEDIRRELPGG 125 (199)
T ss_dssp TEEEEEEEECCSGGGGG-----------GG---GGGCTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTSHHHHSBCTTS
T ss_pred CEEEEEEECCCCHhHHH-----------HH---HHHHhcCCEEEEEEECCcHHHHH--HHHHHHHHHHhChhhhhccccc
Confidence 44567889999643211 11 13467999999999999874421 23233221 01
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHHHHh-----ccCCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 273 PHKHLFFILNKVDLVPIWVTQRWVAILS-----KEYPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 273 ~~k~~IlVLNKiDLv~~~~~~~wl~~l~-----~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
.++|+|+|+||+||.+......+.+.+. +.....+|.+|++++.|+++|++.|.+.+..
T Consensus 126 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 126 GRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp CBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 2789999999999987633333333332 3344567889999999999999988876543
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.39 E-value=8.9e-07 Score=79.46 Aligned_cols=112 Identities=21% Similarity=0.175 Sum_probs=71.6
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVL 281 (534)
.....+.|+||...... + ....+.++|++|+|+|+.++..... ..+..++.. ...++|+++|+
T Consensus 50 ~~~~~~~Dt~G~~~~~~-----------~---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 115 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRP-----------Y---WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA 115 (171)
T ss_dssp TEEEEEEEECCCGGGGG-----------G---GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred CEEEEEEECCCChhhhH-----------H---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEE
Confidence 34456789999642111 1 1234568999999999998754321 122223321 12579999999
Q ss_pred eCCCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||.+......+...+.. ......|.+|++++.|+++|.+.|.+.+.
T Consensus 116 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 116 NKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp ECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 99999875333334443322 22345778899999999999998876543
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.39 E-value=8e-07 Score=79.36 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=70.2
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-----hCCCCcEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-----EKPHKHLFFI 280 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-----~~~~k~~IlV 280 (534)
....+.|+||... + ..++ ...+.++|++|+|+|+.++... ..+..++.. ...+.|+++|
T Consensus 44 ~~~~i~Dt~G~~~-----~------~~~~---~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv 107 (164)
T 1r8s_A 44 ISFTVWDVGGQDK-----I------RPLW---RHYFQNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVF 107 (164)
T ss_dssp CEEEEEECCCCGG-----G------HHHH---HHHTTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred EEEEEEEcCCChh-----h------HHHH---HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCeEEEE
Confidence 4566789999531 1 1122 3357899999999999887432 223333321 2247899999
Q ss_pred EeCCCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 281 LNKVDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+||+||.+......+...+.. ......+.+|++++.|+++|.+.|.+.+
T Consensus 108 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 108 ANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred EECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 999999765333334343322 1233467889999999999999887644
No 85
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.39 E-value=1.8e-06 Score=79.06 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV 362 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~ 362 (534)
..++|+++|.+|||||||||+|++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC
Confidence 578999999999999999999998653
No 86
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.38 E-value=3.3e-07 Score=83.59 Aligned_cols=120 Identities=15% Similarity=0.041 Sum_probs=70.3
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---H-Hh-hCCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---L-RR-EKPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L-~~-~~~~k~~IlVL 281 (534)
...+.|+||...... + ....+.++|++|+|+|+.++.... .+..+ + .. ...+.|+|+|+
T Consensus 55 ~~~l~Dt~G~~~~~~--~------------~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~ 118 (181)
T 3t5g_A 55 HLQLVDTAGQDEYSI--F------------PQTYSIDINGYILVYSVTSIKSFE--VIKVIHGKLLDMVGKVQIPIMLVG 118 (181)
T ss_dssp EEEEEECCCCCTTCC--C------------CGGGTTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHC----CCEEEEE
T ss_pred EEEEEeCCCchhhhH--H------------HHHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEE
Confidence 345789999654321 1 012345899999999998764322 22222 2 21 23478999999
Q ss_pred eCCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhhccccceEEEEEecCCCchhH
Q psy6781 282 NKVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSS 352 (534)
Q Consensus 282 NKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSS 352 (534)
||+||.+.. ........+.+.+....|.+|++++.|+++|++.|.+.+... -|..++||||
T Consensus 119 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~----------~~~~~~gkss 180 (181)
T 3t5g_A 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM----------DGACSQGKSS 180 (181)
T ss_dssp ECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC---------------CCBSC
T ss_pred ECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHh----------cCCcccCcCC
Confidence 999996432 112222233333344567889999999999988887655422 2667889986
No 87
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.38 E-value=6.6e-07 Score=83.75 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=68.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVLN 282 (534)
...+.|+||...... .....+..+|++|+|+|+.++.... .+..+ +.. ...++|+|+|+|
T Consensus 70 ~~~l~Dt~G~~~~~~--------------~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~n 133 (213)
T 3cph_A 70 KLQLWDTAGQERFRT--------------ITTAYYRGAMGIILVYDVTDERTFT--NIKQWFKTVNEHANDEAQLLLVGN 133 (213)
T ss_dssp EEEEECCTTGGGGTC--------------CCHHHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EEEEEeCCCcHHHHH--------------HHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEE
Confidence 466889999542211 1223567999999999998764321 22222 222 224689999999
Q ss_pred CCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 283 KVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 283 KiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
|+||.+..........+...+...+|.+|++++.|+++|++.|.+.+..
T Consensus 134 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 134 KSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp CTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999543222222222222222346778999999999999988776543
No 88
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.37 E-value=6e-07 Score=97.11 Aligned_cols=110 Identities=19% Similarity=0.226 Sum_probs=72.9
Q ss_pred eeEEecCCCCc-CCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 207 FDIVRDNGGVT-DAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 207 q~l~~Dt~Gi~-~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
...+.||||+. .... .+ ....++..+..+..+|++|+|+|+.++....+..+.+++ .++|+|+|+||+|
T Consensus 292 ~~~l~DTaG~~~~~~~-~v-----e~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~D 361 (482)
T 1xzp_A 292 LFRIVDTAGVRSETND-LV-----ERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVD 361 (482)
T ss_dssp EEEEEESSCCCSSCCT-TC-----CCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECS
T ss_pred EEEEEECCCccccchh-hH-----HHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcc
Confidence 46788999987 4322 11 111234455678899999999999988765443444443 3689999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|.+......+.+++. ....+|.+|++++.|+++|.+.|.+.
T Consensus 362 L~~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 362 VVEKINEEEIKNKLG--TDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp SCCCCCHHHHHHHHT--CSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHhc--CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 975422222222222 11235678999999999999988764
No 89
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.37 E-value=5.5e-07 Score=97.28 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=65.8
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH-HHHHHHHhhCCCCcEEEEEeCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA-HIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~-~le~~L~~~~~~k~~IlVLNKi 284 (534)
....+.||||+..... .....+++..+..+.++|+||+|+|+.++...... ....++.. ..++|+|+|+||+
T Consensus 281 ~~l~liDT~G~~~~~~------~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~ 353 (476)
T 3gee_A 281 TMFRLTDTAGLREAGE------EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKL 353 (476)
T ss_dssp EEEEEEC--------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECT
T ss_pred eEEEEEECCCCCcchh------HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECc
Confidence 3567899999865322 12333445566778999999999999988765221 22233332 2379999999999
Q ss_pred CCCChhhHHHHHHHHhcc-CCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 285 DLVPIWVTQRWVAILSKE-YPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~~-~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||.+...... +.+.+. + ..++.+|++++.|+++|.+.|.+.+
T Consensus 354 Dl~~~~~~~~--~~l~~~~~-~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 354 DRAANADALI--RAIADGTG-TEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp TSCTTTHHHH--HHHHHHHT-SCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred CCCCccchhH--HHHHhcCC-CceEEEEECCCCCHHHHHHHHHHHH
Confidence 9987654321 222221 2 2357789999999999999887654
No 90
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.37 E-value=2.4e-06 Score=75.55 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=62.9
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHcc--
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRG-- 409 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~g-- 409 (534)
.++|+++|.+|||||||+|+|.+..... ..+.++.. ...+.... .+.++||||..... ......+..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~~~~~~~~ 76 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----AMRDQYMRTGE 76 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----HHHHHHHHHCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----HHHHHhhccCC
Confidence 4789999999999999999999765322 22233222 12222322 47899999965322 122222222
Q ss_pred -ccccccCCCch------hhHHHHHHhh---ccceeeehcCCCCCC--CHHHHHHHHHHHhC
Q psy6781 410 -VVRVENIDDPV------QYIDAVLERI---KKVHLVKTYGIDEWE--DTEDFLKKLAFKWG 459 (534)
Q Consensus 410 -vv~v~~i~~~~------~~i~~iL~r~---~k~~l~~~ykId~~~--d~~efLe~la~k~g 459 (534)
++-+-.+.++. .++..+.... ..+.+.+.+|+|... ...+.+..+++..|
T Consensus 77 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 138 (166)
T 2ce2_X 77 GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG 138 (166)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC
Confidence 11111222322 1122222222 456788899999653 22344555666555
No 91
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.37 E-value=6e-07 Score=81.30 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=42.9
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE---EEEeCccEEEEeCCCccc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ---YITLMRRIYLIDCPGVVY 394 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~---~~~~~~~i~liDtPGi~~ 394 (534)
.+.++|+++|.+|||||||+|+|++... .....|++|.+.. +...+..+.|+||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 3578999999999999999999998764 3344566554322 222245788999999743
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.36 E-value=1.2e-06 Score=80.99 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=70.1
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-----hCCCCcEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-----EKPHKHLFFI 280 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-----~~~~k~~IlV 280 (534)
....+.|+||... + . ......+.++|++|+|+|+.++.... .+..++.. ...+.|+|+|
T Consensus 67 ~~~~l~Dt~G~~~-----~------~---~~~~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv 130 (188)
T 1zd9_A 67 VTIKLWDIGGQPR-----F------R---SMWERYCRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVL 130 (188)
T ss_dssp EEEEEEEECCSHH-----H------H---TTHHHHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEE
T ss_pred EEEEEEECCCCHh-----H------H---HHHHHHHccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCCEEEE
Confidence 3456789999421 1 1 11234568999999999998764332 23333221 1257999999
Q ss_pred EeCCCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 281 LNKVDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+||+||.+......+.+.+.. ......|.+|++++.|+++|++.|.+.+
T Consensus 131 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 131 GNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred EECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999864333344444332 1234567889999999999999887654
No 93
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.36 E-value=1.8e-06 Score=79.43 Aligned_cols=142 Identities=17% Similarity=0.132 Sum_probs=76.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGV 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gv 410 (534)
..++|+++|.+|||||||+|+|++... .....|++|... ..+..+. .+.|+||||..... ......+..+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~ 89 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----TITSSYYRGA 89 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC----TTHHHHHTTC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh----hhHHHHHhhC
Confidence 468999999999999999999997653 233345554433 3333333 58899999964332 1223333322
Q ss_pred cc---cccCCCch--hhHHHH---HHhh---ccceeeehcCCCCCCC---HHHHHHHHHHHhCCcc----ccCcchHHHH
Q psy6781 411 VR---VENIDDPV--QYIDAV---LERI---KKVHLVKTYGIDEWED---TEDFLKKLAFKWGKIK----KKGEPVITAS 472 (534)
Q Consensus 411 v~---v~~i~~~~--~~i~~i---L~r~---~k~~l~~~ykId~~~d---~~efLe~la~k~g~l~----kgG~pD~~~a 472 (534)
.. +-.+.++. +.+..+ +... ..+.+.+.+|+|.... ..+....++...+.-. ....-.+..+
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 11 11122222 122222 2222 3567888899996532 2234566666665311 1111245555
Q ss_pred HHHHHHHHHc
Q psy6781 473 AKMVLNDWQR 482 (534)
Q Consensus 473 A~~vL~d~~~ 482 (534)
-..++..+..
T Consensus 170 ~~~l~~~i~~ 179 (196)
T 3tkl_A 170 FMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.36 E-value=9.3e-07 Score=81.44 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=69.8
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh---h--CCCCcEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR---E--KPHKHLFFI 280 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~---~--~~~k~~IlV 280 (534)
....+.|+||...... +| ...+.++|++|+|+|+.++... ..+..++.. . ..+.|+|+|
T Consensus 60 ~~~~i~Dt~G~~~~~~-----------~~---~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv 123 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRS-----------SW---NTYYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIF 123 (187)
T ss_dssp EEEEEEECCC----CG-----------GG---HHHHTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTSGGGTTCEEEEE
T ss_pred EEEEEEECCCCHhHHH-----------HH---HHHhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhchhhCCCeEEEE
Confidence 4566889999642211 11 2346799999999999987533 233333321 1 257999999
Q ss_pred EeCCCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 281 LNKVDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+||+||.+......+.+.+.. ......|.+|++++.|+++|++.|.+.+.
T Consensus 124 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 124 ANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp EECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred EECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 999999764222333333321 22345778999999999999999877654
No 95
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.36 E-value=9e-07 Score=81.57 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=69.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVLN 282 (534)
...+.|+||...... .....+..+|++|+|+|+.++.... .+..+ +.. ...+.|+|+|+|
T Consensus 66 ~~~i~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~n 129 (196)
T 3tkl_A 66 KLQIWDTAGQERFRT--------------ITSSYYRGAHGIIVVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGN 129 (196)
T ss_dssp EEEEEEECCSGGGCT--------------THHHHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCcHhhhh--------------hHHHHHhhCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEE
Confidence 456789999532211 1234567899999999998764321 22223 222 234789999999
Q ss_pred CCCCCChhhH-HHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhhh
Q psy6781 283 KVDLVPIWVT-QRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLH 332 (534)
Q Consensus 283 KiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~ 332 (534)
|+||.+.... ......+...+....|.+|++++.|++++++.|.+.+...
T Consensus 130 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999765311 1222233333333467789999999999998887765433
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.35 E-value=9.5e-07 Score=81.35 Aligned_cols=59 Identities=25% Similarity=0.228 Sum_probs=43.2
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCccc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~ 394 (534)
++.++|+++|.+|||||||+|+|.+.......+..|.+... ...-...+.++||||...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLET-LQYKNISFEVWDLGGQTG 78 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEE-EEETTEEEEEEEECCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEE-EEECCEEEEEEECCCCHh
Confidence 36799999999999999999999887665555555533221 112245789999999753
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.35 E-value=1.1e-06 Score=81.03 Aligned_cols=112 Identities=21% Similarity=0.146 Sum_probs=71.6
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVL 281 (534)
.....+.||||.......+ ...+.++|++|+|+|+.++..... ..+.+++.. ...++|+|+|+
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~--------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 130 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYW--------------RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA 130 (189)
T ss_dssp TEEEEEEEECCSSSSCCCC--------------SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEE
T ss_pred CEEEEEEECCCCHhHHHHH--------------HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEE
Confidence 3456788999964322210 123468999999999998754321 122233321 12578999999
Q ss_pred eCCCCCChhhHHHHHHHHh----ccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPIWVTQRWVAILS----KEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~----~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||.+......+.+.+. .......+.+|++++.|+++|.+.|.+.+.
T Consensus 131 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 131 NKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 9999986532233333332 122345778899999999999998877654
No 98
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.35 E-value=1.1e-06 Score=82.77 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=69.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhC-----CCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREK-----PHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~-----~~k~~IlVL 281 (534)
...+.|+||.. ++.......+.++|++|+|+|+.++... ..+..++.... .++|+|+|+
T Consensus 85 ~l~l~Dt~G~~--------------~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~ 148 (217)
T 2f7s_A 85 HLQLWDTAGQE--------------RFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIG 148 (217)
T ss_dssp EEEEEEEESHH--------------HHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEE
T ss_pred EEEEEECCCcH--------------hHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEE
Confidence 45678999831 1222344567899999999999876432 23445554311 578999999
Q ss_pred eCCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 282 NKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 282 NKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||+||.+... .......+...+....|.+|++++.|+++|++.|.+.+
T Consensus 149 NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 149 NKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999975321 12222333333333467789999999999988887654
No 99
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.34 E-value=1.1e-06 Score=77.75 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=67.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh--hCCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR--EKPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~--~~~~k~~IlVL 281 (534)
...+.|+||...... + ....+.++|.+++|+|+.++.... .+..++ .. ...++|+++|+
T Consensus 52 ~~~~~D~~G~~~~~~-----------~---~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~p~iiv~ 115 (166)
T 2ce2_X 52 LLDILDTAGQEEYSA-----------M---RDQYMRTGEGFLCVFAINNTKSFE--DIHQYREQIKRVKDSDDVPMVLVG 115 (166)
T ss_dssp EEEEEECCCCSSCCH-----------H---HHHHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred EEEEEECCCchhhhH-----------H---HHHhhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEE
Confidence 356789999542211 1 123566899999999998764321 222222 22 12379999999
Q ss_pred eCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 282 NKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||+||.+..........+.+.+...+|.+|+.++.|++++++.|.+.+
T Consensus 116 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 999998643222223333332233467789999999999998887654
No 100
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.34 E-value=1e-06 Score=78.80 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=68.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVLN 282 (534)
...+.|+||...... .....+.++|++|+|+|+.++.... .+..+ +.. ...+.|+++|+|
T Consensus 53 ~~~l~D~~G~~~~~~--------------~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~n 116 (170)
T 1g16_A 53 KLQIWDTAGQERFRT--------------ITTAYYRGAMGIILVYDITDERTFT--NIKQWFKTVNEHANDEAQLLLVGN 116 (170)
T ss_dssp EEEEECCTTGGGTSC--------------CCHHHHTTEEEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCChhhhh--------------hHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEE
Confidence 456789999532211 1223567999999999998764321 22233 222 235789999999
Q ss_pred CCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+..........+.+.+....|.+|++++.|+++|++.|.+.+.
T Consensus 117 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 117 KSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp CTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999954322222222232222234677899999999999998877654
No 101
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.34 E-value=4.4e-07 Score=83.80 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=41.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|++..... ..+..|++.....+... ..+.|+||||...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH
Confidence 46899999999999999999999765422 23344554443333333 3689999999643
No 102
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.34 E-value=5.3e-07 Score=93.14 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=28.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-----eeCCCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-----KTAPVPG 370 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-----~v~~~pg 370 (534)
...+|+|+|.||||||||+|+|++.... .++..|+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 4578999999999999999999997754 4455566
No 103
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.34 E-value=1.6e-06 Score=80.07 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=40.7
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceee--CCCCCceeeeEEEEeCccEEEEeCCCccc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKT--APVPGETKVWQYITLMRRIYLIDCPGVVY 394 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v--~~~pgtTk~~~~~~~~~~i~liDtPGi~~ 394 (534)
....+|+|+|.+|||||||+|+|++.....+ .+..|.+... +-.....+.|+||||...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET-FEKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE-EEETTEEEEEEEECCSGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE-EEeCCEEEEEEECCCCHh
Confidence 3578999999999999999999999876554 5555533321 122245789999999753
No 104
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.34 E-value=8.6e-07 Score=80.78 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=42.4
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCccc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~ 394 (534)
...++|+++|.+|||||||+|+|.+.......+..|.+... ....+..+.++||||...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVET-LSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEE-EEETTEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEE-EEECCEEEEEEECCCCHh
Confidence 46899999999999999999999987766677777754322 111245789999999854
No 105
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.34 E-value=7.1e-07 Score=84.73 Aligned_cols=153 Identities=8% Similarity=-0.065 Sum_probs=84.6
Q ss_pred cceEEEEEecCCCchhHHHHhhh-CCCceeeCCCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHccc-
Q psy6781 336 KQISVGFIGYPNVGKSSIINALR-NKKVCKTAPVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGV- 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~-~~~~~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gv- 410 (534)
..++|+++|.+|||||||+|+|+ +.......+.+|+|.....+... ..+.|+||||..... . .....+.++
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~--~~~~~~~~~~ 89 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG--G--LRDGYYIQAQ 89 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTS--C--CCHHHHTTCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHh--H--HHHHHHhcCC
Confidence 56899999999999999999954 44455677888888776555543 368899999964322 1 122233222
Q ss_pred --cccccCCCch------hhHHHHHHhh-ccceeeehcCCCCCCCH-HHHHHHHHHHhCCc-----cccCcchHHHHHHH
Q psy6781 411 --VRVENIDDPV------QYIDAVLERI-KKVHLVKTYGIDEWEDT-EDFLKKLAFKWGKI-----KKKGEPVITASAKM 475 (534)
Q Consensus 411 --v~v~~i~~~~------~~i~~iL~r~-~k~~l~~~ykId~~~d~-~efLe~la~k~g~l-----~kgG~pD~~~aA~~ 475 (534)
+-+-.+.++. .++..+.... ..+.+.+.+|+|..... .+-...++...+.- .+.| -++..+-..
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~l~~~ 168 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSN-YNFEKPFLW 168 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGT-BTTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCC-CCHHHHHHH
Confidence 1111122221 2222333322 45678889999865321 11122334444421 1222 245556666
Q ss_pred HHHHHHcCCCCcccCCCC
Q psy6781 476 VLNDWQRGKLPYYTVPEG 493 (534)
Q Consensus 476 vL~d~~~Gkl~~~~~pp~ 493 (534)
+.+.+....-.++...|.
T Consensus 169 l~~~l~~~~~~~~~~~~~ 186 (221)
T 3gj0_A 169 LARKLIGDPNLEFVAMPA 186 (221)
T ss_dssp HHHHHHTCTTCCEEECCC
T ss_pred HHHHHHhCcccccccCCC
Confidence 666666655444443333
No 106
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.34 E-value=2.2e-06 Score=77.80 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=65.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceee-CCCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHcccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGVV 411 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v-~~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gvv 411 (534)
..++|+++|.+|||||||+|+|++...... .+..|.+.....+... ..+.|+||||..... ......+.++.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~d 86 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH----SLAPMYYRGAA 86 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG----GGTHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh----hhhHHHhccCC
Confidence 468999999999999999999997654322 1223333333333333 268999999964322 12233333221
Q ss_pred c---cccCCCch------hhHHHHHHhh--ccceeeehcCCCCCCC---HHHHHHHHHHHhC
Q psy6781 412 R---VENIDDPV------QYIDAVLERI--KKVHLVKTYGIDEWED---TEDFLKKLAFKWG 459 (534)
Q Consensus 412 ~---v~~i~~~~------~~i~~iL~r~--~k~~l~~~ykId~~~d---~~efLe~la~k~g 459 (534)
. +-.+.++. .++..+.... ..+.+.+.+|+|.... ..+.+..++...|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENG 148 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcC
Confidence 1 11122221 1222233322 3456788899997532 1233455565555
No 107
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.34 E-value=9.1e-07 Score=81.13 Aligned_cols=112 Identities=16% Similarity=0.035 Sum_probs=71.7
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVL 281 (534)
.....+.||||.... .......+.++|++|+|+|+.++..... ..+..++.. ...+.|+|+|+
T Consensus 61 ~~~~~~~Dt~G~~~~--------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 126 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSL--------------RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA 126 (186)
T ss_dssp TEEEEEEEECCSHHH--------------HTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred CEEEEEEECCCCHhH--------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEE
Confidence 345668899995311 0111234679999999999988754321 112222221 12579999999
Q ss_pred eCCCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||.+........+.+.. ......+.+|++++.|+++|.+.|.+.+.
T Consensus 127 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 127 NKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999765333344444321 22345778899999999999998876554
No 108
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.33 E-value=1.5e-07 Score=98.49 Aligned_cols=58 Identities=31% Similarity=0.485 Sum_probs=45.0
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EE----------------------eCccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--IT----------------------LMRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~----------------------~~~~i~liDtPGi~ 393 (534)
++|++||.||||||||+|+|++.. +.++++|++|..... .. .+..+.|+||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 468999999999999999999875 467888888865322 11 12369999999998
Q ss_pred cCC
Q psy6781 394 YDM 396 (534)
Q Consensus 394 ~p~ 396 (534)
...
T Consensus 81 ~~a 83 (368)
T 2dby_A 81 KGA 83 (368)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 109
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.33 E-value=2.2e-06 Score=76.64 Aligned_cols=118 Identities=21% Similarity=0.196 Sum_probs=62.1
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccc-
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGV- 410 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gv- 410 (534)
.++|+++|.+|||||||+|+|.+... .....|.++... ..+..+. .+.|+||||..... . .....+.++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--~--~~~~~~~~~d 77 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR--T--ITTAYYRGAM 77 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS--C--CCHHHHTTEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh--h--hHHHHhccCC
Confidence 57899999999999999999997653 223334444332 2333332 58899999965332 1 122233222
Q ss_pred --cccccCCCch------hhHHHHHHhh--ccceeeehcCCCCCC--CHHHHHHHHHHHhC
Q psy6781 411 --VRVENIDDPV------QYIDAVLERI--KKVHLVKTYGIDEWE--DTEDFLKKLAFKWG 459 (534)
Q Consensus 411 --v~v~~i~~~~------~~i~~iL~r~--~k~~l~~~ykId~~~--d~~efLe~la~k~g 459 (534)
+-+-.+.++. .++..+.... ..+.+.+.+|+|... ...+....+++..|
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 138 (170)
T 1g16_A 78 GIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG 138 (170)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC
Confidence 1111122221 2222233322 456788899998632 12234455666555
No 110
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.32 E-value=4.9e-07 Score=80.92 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=43.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|.+... ....+.+|++.....+... ..+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 468999999999999999999998653 2345566766554444443 368899999974
No 111
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.32 E-value=7.3e-06 Score=73.38 Aligned_cols=124 Identities=10% Similarity=-0.028 Sum_probs=59.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCc-eeeeEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccccc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGE-TKVWQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGVVR 412 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgt-Tk~~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gvv~ 412 (534)
.++|+++|.+|||||||+|+|.+.........+.+ ......+..+. .+.++||||............-.-..+++-
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 46899999999999999999987554332222221 11112222332 578999999854321001100011112222
Q ss_pred cccCCCc------hhhHHHHHHhh---ccceeeehcCCCCCC---CHHHHHHHHHHHhCC
Q psy6781 413 VENIDDP------VQYIDAVLERI---KKVHLVKTYGIDEWE---DTEDFLKKLAFKWGK 460 (534)
Q Consensus 413 v~~i~~~------~~~i~~iL~r~---~k~~l~~~ykId~~~---d~~efLe~la~k~g~ 460 (534)
+-.+.++ ..++..++... ..+.+.+.+|+|... -..+....++...+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 141 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC 141 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC
Confidence 2222222 22333344332 456788899999642 123445566666654
No 112
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.32 E-value=2.1e-06 Score=78.73 Aligned_cols=109 Identities=14% Similarity=0.008 Sum_probs=69.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH----HHHHHHHh---hCCCCcEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA----HIENFLRR---EKPHKHLFF 279 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~----~le~~L~~---~~~~k~~Il 279 (534)
...+.||||...... + ....+.++|++|+|+|+.++....+. .+.+++.. ...+.|+|+
T Consensus 75 ~~~i~Dt~G~~~~~~-----------~---~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 75 RFHLYTVPGQVFYNA-----------S---RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEECCSCCSCSH-----------H---HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred EEEEEeCCChHHHHH-----------H---HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 456789999532111 1 22357799999999999855322221 23334432 226789999
Q ss_pred EEeCCCCCChhhHHHHHHHHhccCCe-EEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 280 ILNKVDLVPIWVTQRWVAILSKEYPT-IAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 280 VLNKiDLv~~~~~~~wl~~l~~~~p~-v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||+||.+........+.+ +.+.. ..|.+|++++.|+++|++.|.+.+.
T Consensus 141 v~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 141 QVNKRDLPDALPVEMVRAVV-DPEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp EEECTTSTTCCCHHHHHHHH-CTTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred EEEchhcccccCHHHHHHHH-HhcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 99999997643223333333 33333 5678899999999999988876543
No 113
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.31 E-value=1e-06 Score=99.93 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=36.7
Q ss_pred ccCCCCChHHHHHHHHHHhhh---h---ccccceEEEEEecCCCchhHHHHhhhCCCceeeC
Q psy6781 311 SMTHPFGKGSIINLLRQFSKL---H---TERKQISVGFIGYPNVGKSSIINALRNKKVCKTA 366 (534)
Q Consensus 311 Sa~~~~gi~~Li~~L~~~~~~---~---~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~ 366 (534)
++..+.|.+.|+.++.++... . ..-.-.+|+|+|.+|+|||||||+|.+.....++
T Consensus 19 ~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g 80 (772)
T 3zvr_A 19 SHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRG 80 (772)
T ss_dssp ------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCS
T ss_pred cccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcC
Confidence 344566778888777665331 1 1124579999999999999999999997654433
No 114
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.31 E-value=1.8e-06 Score=81.08 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=38.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-CccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-MRRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi~~ 394 (534)
+..+|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHIQ 81 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcHh
Confidence 567899999999999999999998776555555665532 2222 35789999999653
No 115
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.31 E-value=1.5e-06 Score=80.24 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=65.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeC-CCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHcccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTA-PVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGVV 411 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~-~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gvv 411 (534)
..++|+|+|.+|||||||||+|++....... +..|.+.....+..+ ..+.|+||||..... ......+.++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~d 99 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR----AITSAYYRGAV 99 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC----TTHHHHHTTCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh----hhhHHHhccCC
Confidence 4689999999999999999999986543322 223433332233322 368899999975432 12233333321
Q ss_pred c---cccCCCch------hhHHHHHHhh--ccceeeehcCCCCCCC---HHHHHHHHHHHhC
Q psy6781 412 R---VENIDDPV------QYIDAVLERI--KKVHLVKTYGIDEWED---TEDFLKKLAFKWG 459 (534)
Q Consensus 412 ~---v~~i~~~~------~~i~~iL~r~--~k~~l~~~ykId~~~d---~~efLe~la~k~g 459 (534)
. +-.+.++. .++..+.... ..+.+.+.+|+|.... ..+....++...|
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 161 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG 161 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence 1 11122222 1222222221 3456788899886431 1233455555554
No 116
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.31 E-value=1.9e-06 Score=79.48 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=70.0
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhhC---CCCcEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRREK---PHKHLFFI 280 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~~---~~k~~IlV 280 (534)
....+.|+||...... + ....+.++|++|+|+|+.++..... ..+..++.... .++|+|+|
T Consensus 67 ~~~~l~Dt~G~~~~~~--~------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv 132 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRN--L------------WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132 (190)
T ss_dssp CEEEEEEECCSTTTGG--G------------GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEE
T ss_pred EEEEEEECCCCHHHHH--H------------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEE
Confidence 4567889999543211 1 1234679999999999987633211 12222332211 57899999
Q ss_pred EeCCCCCChhhHHHHHHHHh-cc---CCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 281 LNKVDLVPIWVTQRWVAILS-KE---YPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~-~~---~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+||+||........+.+.+. .. ....+|.+|++++.|+++|++.|.+.+
T Consensus 133 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 133 ANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp EECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred EeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 99999976433333333332 11 234567889999999999999887654
No 117
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.30 E-value=1e-06 Score=78.64 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=67.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH----HhhCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL----RREKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L----~~~~~~k~~IlVLN 282 (534)
...+.|+||..... ......+.++|++|+|+|+.++... ..+..++ ....++.|+++|+|
T Consensus 56 ~~~~~D~~G~~~~~--------------~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~n 119 (170)
T 1r2q_A 56 KFEIWDTAGQERYH--------------SLAPMYYRGAQAAIVVYDITNEESF--ARAKNWVKELQRQASPNIVIALSGN 119 (170)
T ss_dssp EEEEEEECCSGGGG--------------GGHHHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCcHHhh--------------hhhHHhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 45678999953211 1123456799999999999876432 2233332 22245788999999
Q ss_pred CCCCCChhhH-HHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 283 KVDLVPIWVT-QRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 283 KiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+||.+.... ......+...+....|.+|++++.|+++|++.|.+.+
T Consensus 120 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred CccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999653211 1112222233444567889999999999999887644
No 118
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.30 E-value=1.9e-06 Score=76.79 Aligned_cols=102 Identities=11% Similarity=0.059 Sum_probs=56.4
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHcc--
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRG-- 409 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~g-- 409 (534)
.++|+++|.+|||||||+|+|.+..... ..+.++... ..+... ..+.|+||||..... ......+..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~~~~~~~~~d 76 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----AMRDLYMKNGQ 76 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----THHHHHHHHCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----HHHHHHhccCC
Confidence 5789999999999999999999754321 122222211 122232 258899999975332 122233322
Q ss_pred -ccccccCCCch------hhHHHHHHh---hccceeeehcCCCCC
Q psy6781 410 -VVRVENIDDPV------QYIDAVLER---IKKVHLVKTYGIDEW 444 (534)
Q Consensus 410 -vv~v~~i~~~~------~~i~~iL~r---~~k~~l~~~ykId~~ 444 (534)
++-+-.+.++. .++..++.. ...+.+.+.+|+|..
T Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 77 GFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 11111222321 222333332 245678889999964
No 119
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.30 E-value=9.3e-07 Score=78.49 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=62.1
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccc-
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGV- 410 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gv- 410 (534)
.++|+++|.+|||||||+|+|.+..... ..+.++.. ...+..+. .+.|+||||..... ......+.++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~~~~~~~~~~ 76 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----SMRDLYIKNGQ 76 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----HHHHHHHHHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH----HHHHHHhccCC
Confidence 5789999999999999999999765322 22222222 22223332 48899999954221 1222233221
Q ss_pred --cccccCCCch------hhHHHHHHhh---ccceeeehcCCCCCCC---HHHHHHHHHHHhC
Q psy6781 411 --VRVENIDDPV------QYIDAVLERI---KKVHLVKTYGIDEWED---TEDFLKKLAFKWG 459 (534)
Q Consensus 411 --v~v~~i~~~~------~~i~~iL~r~---~k~~l~~~ykId~~~d---~~efLe~la~k~g 459 (534)
+-+-.+.++. .++..++... ..+.+.+.+|+|.... ..+....++...|
T Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 139 (167)
T 1kao_A 77 GFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG 139 (167)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC
Confidence 1111222322 2222333332 4667888899985421 1233344555544
No 120
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.30 E-value=5.3e-06 Score=76.71 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=65.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceee-CCCCCceeeeEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccc-
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGV- 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v-~~~pgtTk~~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gv- 410 (534)
..++|+++|.+|||||||+|+|++...... .+..|.+.....+..+. .+.|+||||..... . .....+.++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~--~~~~~~~~~d 95 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR--S--ITRSYYRGAA 95 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTS--C--CCHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhh--h--hHHHHhccCC
Confidence 468999999999999999999997654322 22234333333344443 68999999965322 1 122233222
Q ss_pred --cccccCCCch------hhHHHHHHhh--ccceeeehcCCCCCC---CHHHHHHHHHHHhCC
Q psy6781 411 --VRVENIDDPV------QYIDAVLERI--KKVHLVKTYGIDEWE---DTEDFLKKLAFKWGK 460 (534)
Q Consensus 411 --v~v~~i~~~~------~~i~~iL~r~--~k~~l~~~ykId~~~---d~~efLe~la~k~g~ 460 (534)
+-+-.+.++. .++..+.... ..+.+.+.+|+|... -..+....++...|.
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 158 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL 158 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC
Confidence 1111122222 1222222221 345678889999642 113345566666653
No 121
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.29 E-value=2.8e-06 Score=77.44 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=63.7
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHcc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRG 409 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~g 409 (534)
...++|+++|.+|||||||+|+|.+.... .....++.. ...+..+. .+.++||||..... ......+.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~~~~~~~ 89 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS----AMREQYMRT 89 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC----SSHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH----HHHHHHHhc
Confidence 35789999999999999999999975432 222222221 22223333 35679999965332 122333322
Q ss_pred ---ccccccCCCc------hhhHHHHHH---hhccceeeehcCCCCCC---CHHHHHHHHHHHhC
Q psy6781 410 ---VVRVENIDDP------VQYIDAVLE---RIKKVHLVKTYGIDEWE---DTEDFLKKLAFKWG 459 (534)
Q Consensus 410 ---vv~v~~i~~~------~~~i~~iL~---r~~k~~l~~~ykId~~~---d~~efLe~la~k~g 459 (534)
++-+-.+.++ ..++..++. ....+.+.+.+|+|... -..+....++...+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 154 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN 154 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC
Confidence 2222222332 122222332 22346788889999643 12233455565555
No 122
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.28 E-value=8.3e-07 Score=81.98 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=38.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc--eeeCCCCCceeeeEEEEe-CccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV--CKTAPVPGETKVWQYITL-MRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~--~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++... ....+..|.+. ..+.. +..+.|+||||..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI--EKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE--EEEECSSCEEEEEEECCST
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE--EEEEECCEEEEEEECCCCH
Confidence 578999999999999999999998762 22223333221 12222 4579999999964
No 123
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.28 E-value=1.7e-06 Score=78.51 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=69.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLN 282 (534)
...+.|+||...... .....+.++|++|+|+|+.++... ..+..++ .. ..++.|+++|+|
T Consensus 62 ~~~i~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~i~v~n 125 (181)
T 2efe_B 62 KFEIWDTAGQERYHS--------------LAPMYYRGAAAAIIVFDVTNQASF--ERAKKWVQELQAQGNPNMVMALAGN 125 (181)
T ss_dssp EEEEEECCCSGGGGG--------------GTHHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCChhhhh--------------hhHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 566889999532111 122356789999999999876442 1233332 22 235789999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+... .......+...+....|.+|++++.|+++|++.|.+.+.
T Consensus 126 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 126 KSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred CCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999975421 122222233333445678899999999999998876543
No 124
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.28 E-value=1.6e-06 Score=80.77 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=67.6
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-----hCCCCcEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-----EKPHKHLFFI 280 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-----~~~~k~~IlV 280 (534)
....+.|+||...... + ....+.++|++|+|+|+.++... ..+..++.. ...+.|+|+|
T Consensus 73 ~~~~i~Dt~G~~~~~~-----------~---~~~~~~~~d~iilv~D~~~~~s~--~~~~~~l~~~~~~~~~~~~piilv 136 (192)
T 2b6h_A 73 ICFTVWDVGGQDKIRP-----------L---WRHYFQNTQGLIFVVDSNDRERV--QESADELQKMLQEDELRDAVLLVF 136 (192)
T ss_dssp EEEEEEECC-----CT-----------T---HHHHHHTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred EEEEEEECCCCHhHHH-----------H---HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHhcccccCCCeEEEE
Confidence 3456789999632111 1 22356799999999999887432 223333321 1247899999
Q ss_pred EeCCCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 281 LNKVDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+||+||.+......+.+.+.. ......+.+|++++.|+++|++.|.+.+
T Consensus 137 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 137 ANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred EECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 999999765333344444332 1233467889999999999999887543
No 125
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.28 E-value=2.7e-06 Score=75.74 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=67.8
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|+||...... ++ ...+.++|++++|+|+.++.+... ..+..+... ...++|+++|+||
T Consensus 52 ~~~l~D~~G~~~~~~-----------~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1c1y_A 52 MLEILDTAGTEQFTA-----------MR---DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117 (167)
T ss_dssp EEEEEEECSSCSSTT-----------HH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEEC
T ss_pred EEEEEECCChHHHHH-----------HH---HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEEC
Confidence 456789999643221 11 234568999999999987643221 112222221 2357999999999
Q ss_pred CCCCChhh-HHHHHHHHhccC-CeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 284 VDLVPIWV-TQRWVAILSKEY-PTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 284 iDLv~~~~-~~~wl~~l~~~~-p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
+||.+... .......+.+.+ ....|.+|++++.|+++|++.|.+.
T Consensus 118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 118 CDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 99975321 122222333333 3456788999999999999888754
No 126
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.28 E-value=7.3e-07 Score=82.25 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=44.8
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
...++|+++|.+|||||||+|+|.+.....+.+.+|.+..... ..+..+.++||||..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~-~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQR 71 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEE-ETTEEEEEEECSSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEE-ECCEEEEEEECCCCH
Confidence 3578999999999999999999999876666777775533221 124578999999964
No 127
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.28 E-value=7.4e-07 Score=79.58 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=68.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---H-hhCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---R-REKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~-~~~~~k~~IlVLN 282 (534)
...+.|+||..... ......+.++|++|+|+|+.++... ..+..++ . ....+.|+++|+|
T Consensus 53 ~~~~~D~~G~~~~~--------------~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~n 116 (170)
T 1ek0_A 53 KFEIWDTAGQERFA--------------SLAPXYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGN 116 (170)
T ss_dssp EEEEEEECCSGGGG--------------GGHHHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCChhhh--------------hhhhhhhccCcEEEEEEecCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 45678999953211 1123456799999999999876433 2233332 2 2235789999999
Q ss_pred CCCCCCh----hhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 283 KVDLVPI----WVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 283 KiDLv~~----~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|+||.+. .........+...+....|.+|++++.|+++|.+.|.+.
T Consensus 117 K~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 117 KIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp CGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred CCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999753 122233333333333456788999999999999888753
No 128
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.27 E-value=2.3e-06 Score=78.44 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=67.1
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh--hCCCCcEEEEEeC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR--EKPHKHLFFILNK 283 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~--~~~~k~~IlVLNK 283 (534)
....+.|+||...... .....+..+|++|+|+|+.+|... ..+..++.. ...+.|+|+|+||
T Consensus 93 ~~~~i~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~piilv~NK 156 (208)
T 3clv_A 93 IKFDIWDTAGQERYAS--------------IVPLYYRGATCAIVVFDISNSNTL--DRAKTWVNQLKISSNYIIILVANK 156 (208)
T ss_dssp EEEEEEECTTGGGCTT--------------THHHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCCEEEEEEEC
T ss_pred eEEEEEECCCcHHHHH--------------HHHHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHhhCCCcEEEEEEC
Confidence 3456889999532111 123456799999999999877433 233333321 1234899999999
Q ss_pred CCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 284 VDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 284 iDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+|+..... .....+++. .+...+|.+|++++.|+++|++.|.+.+
T Consensus 157 ~D~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 157 IDKNKFQVDILEVQKYAQ-DNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp TTCC-CCSCHHHHHHHHH-HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCcccccCCHHHHHHHHH-HcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99432221 222222222 2344567889999999999998887654
No 129
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.27 E-value=1.4e-06 Score=77.86 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=70.2
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFIL 281 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVL 281 (534)
....+.|+||..... ......+.++|++|+|+|+.++.... .+..+ +.. ..++.|+++|+
T Consensus 55 ~~~~~~Dt~G~~~~~--------------~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~iilv~ 118 (170)
T 1z0j_A 55 HKFLIWDTAGLERFR--------------ALAPMYYRGSAAAIIVYDITKEETFS--TLKNWVRELRQHGPPSIVVAIAG 118 (170)
T ss_dssp EEEEEEEECCSGGGG--------------GGTHHHHTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTSEEEEEE
T ss_pred EEEEEEcCCCchhhh--------------cccHhhCcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCcEEEEE
Confidence 345688999963211 11224567999999999998764432 22222 332 24678899999
Q ss_pred eCCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 282 NKVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 282 NKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||+||.+.. ........+...+....|.+|++++.|+++|.+.|.+.+
T Consensus 119 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 119 NKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred ECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 999997532 112333333333344577889999999999999887643
No 130
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.27 E-value=3.7e-06 Score=90.83 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=74.6
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||. ..+...+...+..+|++|+|+||.++..........++.. .+.|.|+|+||+
T Consensus 72 ~~~i~iiDtPGh--------------~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~ 135 (482)
T 1wb1_A 72 NYRITLVDAPGH--------------ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKS 135 (482)
T ss_dssp TEEEEECCCSSH--------------HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECT
T ss_pred CEEEEEEECCCh--------------HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 346778999993 1234556677889999999999997644322222223332 468889999999
Q ss_pred CCCChhhHHH----HHHHHhcc--C-CeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 285 DLVPIWVTQR----WVAILSKE--Y-PTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 285 DLv~~~~~~~----wl~~l~~~--~-p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
||++...... ..+++... + ...++.+|+.++.|+++|++.|.+.++.
T Consensus 136 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 136 DNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 9997543322 22223221 2 2346788999999999999999886653
No 131
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=6.1e-06 Score=77.55 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=37.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee-EEEEeCc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW-QYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~-~~~~~~~---~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|++...... ..|.++... ..+..+. .+.|+||||...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc-CCCcccceEEEEEEECCEEEEEEEEECCCcHH
Confidence 467999999999999999999998654321 112222221 1223333 588999999753
No 132
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.26 E-value=3.7e-06 Score=78.35 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=57.0
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE-eCccEEEEeCCCcccCCCCCcchHHHHHccc---
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT-LMRRIYLIDCPGVVYDMTNVETDTEKVLRGV--- 410 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~-~~~~i~liDtPGi~~p~~~~~~~~e~vL~gv--- 410 (534)
.+.++|+++|.+|||||||+|+|++.......+..|.+. ..+. ....+.++||||..... ......+.++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~d~i 100 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNICFTVWDVGGQDKIR----PLWRHYFQNTQGL 100 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEE--EEEEETTEEEEEEECC-----C----TTHHHHHHTCCEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeE--EEEEECCEEEEEEECCCCHhHH----HHHHHHhccCCEE
Confidence 467999999999999999999999766544332223111 1122 23478999999975322 1222233222
Q ss_pred cccccCCCch------hhHHHHHHhh---ccceeeehcCCCCCC
Q psy6781 411 VRVENIDDPV------QYIDAVLERI---KKVHLVKTYGIDEWE 445 (534)
Q Consensus 411 v~v~~i~~~~------~~i~~iL~r~---~k~~l~~~ykId~~~ 445 (534)
+=+-.+.++. .++..++... ..+.+.+.+|+|...
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 1111122331 2222333321 456788899999754
No 133
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.25 E-value=1.7e-06 Score=80.82 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=72.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEe---CccEEEEeCCCcccCCCCCcchHHHHHc--
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITL---MRRIYLIDCPGVVYDMTNVETDTEKVLR-- 408 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~---~~~i~liDtPGi~~p~~~~~~~~e~vL~-- 408 (534)
..++|+|+|.+|||||||+|+|.+.... ...+.++.. ...+.. ...+.|+||||...... . ....+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~--~~~~~~~~ 96 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI--L--PYSFIIGV 96 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC--C--CGGGTTTC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH--H--HHHHHhcC
Confidence 5789999999999999999999986643 222222221 111222 23578999999653321 0 111111
Q ss_pred -cccccccCCCch--hhHHHHHHhh-------ccceeeehcCCCCCC---CHHHHHHHHHHHhCCcc----ccCcchHHH
Q psy6781 409 -GVVRVENIDDPV--QYIDAVLERI-------KKVHLVKTYGIDEWE---DTEDFLKKLAFKWGKIK----KKGEPVITA 471 (534)
Q Consensus 409 -gvv~v~~i~~~~--~~i~~iL~r~-------~k~~l~~~ykId~~~---d~~efLe~la~k~g~l~----kgG~pD~~~ 471 (534)
+++-+-.+.++. +.+..++..+ ..+.+.+.+|+|... -..+....++...|... .....++..
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQG 176 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence 111111222222 2222222222 356788899999642 12233456666665411 111124555
Q ss_pred HHHHHHHHHHc
Q psy6781 472 SAKMVLNDWQR 482 (534)
Q Consensus 472 aA~~vL~d~~~ 482 (534)
+-..+++.+..
T Consensus 177 l~~~l~~~i~~ 187 (201)
T 3oes_A 177 IFTKVIQEIAR 187 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 134
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.25 E-value=9.7e-07 Score=80.60 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=67.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhhC--CCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRREK--PHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~~--~~k~~IlVL 281 (534)
...+.|+||... + .......+.++|++|+|+|+.++..... +..+ +.... .++|+|+|+
T Consensus 71 ~~~l~Dt~G~~~-----~---------~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~ 134 (195)
T 3bc1_A 71 HLQLWDTAGLER-----F---------RSLTTAFFRDAMGFLLLFDLTNEQSFLN--VRNWISQLQMHAYSENPDIVLCG 134 (195)
T ss_dssp EEEEEEECCSGG-----G---------HHHHHHTTTTCSEEEEEEETTCHHHHHT--HHHHHHHHHHHSSSSSCCEEEEE
T ss_pred EEEEEeCCCcHH-----H---------HHHHHHHHcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEE
Confidence 456789999531 1 1123456789999999999987654322 2223 22222 578999999
Q ss_pred eCCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||.+... .......+...+....|.+|++++.|++.|++.|.+.+.
T Consensus 135 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 135 NKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9999975321 111122222212234577899999999999988876543
No 135
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.25 E-value=1.9e-06 Score=77.75 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=67.1
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVLN 282 (534)
...+.|+||..... ......+.++|++|+|+|+.++.... .+..+ +.. ...+.|+++|+|
T Consensus 65 ~~~l~Dt~G~~~~~--------------~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~n 128 (179)
T 1z0f_A 65 KLQIWDTAGQERFR--------------AVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIILIGN 128 (179)
T ss_dssp EEEEEECTTGGGTC--------------HHHHHHHHTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCChHhh--------------hhHHHHhccCCEEEEEEeCcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEE
Confidence 45678999943211 12334567999999999998774332 22233 222 235789999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|+||.+... .......+.+.+....|.+|++++.|++++++.|.+.
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 175 (179)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999965321 1111222222233456788999999999998887654
No 136
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.25 E-value=2.3e-06 Score=77.95 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=67.5
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh--hCCCCcEEEEEe
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR--EKPHKHLFFILN 282 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~--~~~~k~~IlVLN 282 (534)
..+.|+||...... ++ ...+.++|++++|+|+.++.... .+..+ +.. ...+.|+|+|+|
T Consensus 54 ~~i~Dt~G~~~~~~-----------~~---~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~n 117 (189)
T 4dsu_A 54 LDILDTAGQEEYSA-----------MR---DQYMRTGEGFLCVFAINNTKSFE--DIHHYREQIKRVKDSEDVPMVLVGN 117 (189)
T ss_dssp EEEEECCCC---CT-----------TH---HHHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred EEEEECCCcHHHHH-----------HH---HHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 44689999543211 11 23456899999999998764321 22222 222 235789999999
Q ss_pred CCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+..........+...+....|.+|+.++.|+++|++.|.+.+.
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 118 KCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp CTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999975433333333333333334677899999999999988876554
No 137
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.24 E-value=4.9e-06 Score=75.72 Aligned_cols=109 Identities=18% Similarity=0.057 Sum_probs=68.7
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh---h--CCCCcEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR---E--KPHKHLFFI 280 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~---~--~~~k~~IlV 280 (534)
....+.|+||....... ....+.++|++++|+|+.++... ..+..++.. . ..++|+|+|
T Consensus 62 ~~~~i~Dt~G~~~~~~~--------------~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv 125 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPY--------------WRCYYADTAAVIFVVDSTDKDRM--STASKELHLMLQEEELQDAALLVF 125 (183)
T ss_dssp EEEEEEEEC----CCTT--------------GGGTTTTEEEEEEEEETTCTTTH--HHHHHHHHHHTTSSTTSSCEEEEE
T ss_pred EEEEEEECCCCHhHHHH--------------HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhCCCeEEEE
Confidence 45567899996432211 11245689999999999887433 233333322 1 367899999
Q ss_pred EeCCCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 281 LNKVDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+||+||.+......+.+.+.. ......+.+|++++.|+++|++.|.+.+.
T Consensus 126 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 126 ANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp EECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 999999764333333333322 12235678899999999999998876553
No 138
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.23 E-value=1.3e-06 Score=78.76 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=66.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH----HhhCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL----RREKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L----~~~~~~k~~IlVLN 282 (534)
...+.|+||...... .....+.++|++|+|+|+.++.... .+..++ .....+.|+++|+|
T Consensus 64 ~~~~~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~n 127 (179)
T 2y8e_A 64 RLQLWDTAGQERFRS--------------LIPSYIRDSTVAVVVYDITNTNSFH--QTSKWIDDVRTERGSDVIIMLVGN 127 (179)
T ss_dssp EEEEEEECCSGGGGG--------------GSHHHHHTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHTTSSEEEEEEE
T ss_pred EEEEEECCCcHHHHH--------------HHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEE
Confidence 456789999532111 1123467899999999998764321 222222 22235789999999
Q ss_pred CCCCCChhh--HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 283 KVDLVPIWV--TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 283 KiDLv~~~~--~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+||.+... ........ .......|.+|++++.|+++|++.|.+.+
T Consensus 128 K~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 128 KTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp CGGGGGGCCSCHHHHHHHH-HHHTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred CCcccccCcCCHHHHHHHH-HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999975421 12222222 22233567789999999999999887644
No 139
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.23 E-value=3.1e-06 Score=84.95 Aligned_cols=124 Identities=10% Similarity=0.008 Sum_probs=75.9
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeC-CCCCCCCcH-HHHHHHHhhCCCCcEEEEEe
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDV-RDPMGTRCA-HIENFLRREKPHKHLFFILN 282 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDA-R~Pl~s~~~-~le~~L~~~~~~k~~IlVLN 282 (534)
..+..+.||||++....... ...+...+...+...+..+|++|+|+|+ ..++..... .+.+++.. .++|+|+|+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~N 206 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQ-PTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVIT 206 (315)
T ss_dssp SCSEEEEECCCCC----------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEE
T ss_pred CCCcEEEECCCCccCCCCCC-chhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEc
Confidence 35688999999875221100 0124556667778889999999999996 555544432 45555543 5789999999
Q ss_pred CCCCCChhh-HHHHHHHHhcc--CCe-EEeeeccCC---CCChHHHHHHHHHHhhh
Q psy6781 283 KVDLVPIWV-TQRWVAILSKE--YPT-IAFHASMTH---PFGKGSIINLLRQFSKL 331 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~--~p~-v~f~~Sa~~---~~gi~~Li~~L~~~~~~ 331 (534)
|+|+.+... ...+++..... .+. .++..|+.+ +.|+..|++.+..+++.
T Consensus 207 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 207 KLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 999986543 23333210011 121 123335555 78889999988887654
No 140
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.23 E-value=1.1e-06 Score=80.46 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=41.5
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCcc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~ 393 (534)
...++|+++|.+|||||||+|+|.+.......+..|.+... ...-...+.++||||..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKT-LEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEE-EEETTEEEEEEEECCSH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEE-EEECCEEEEEEECCCCH
Confidence 35799999999999999999999987744444444533221 11124578999999974
No 141
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.22 E-value=1.7e-06 Score=76.81 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=37.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~ 393 (534)
+.++|+++|.+|||||||+|+|.+.... ...+.++... ..+..+. .+.|+||||..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 3589999999999999999999976532 2233333222 1223333 68899999964
No 142
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.22 E-value=5.3e-06 Score=76.05 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=68.2
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh---h--CCCCcEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR---E--KPHKHLFFI 280 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~---~--~~~k~~IlV 280 (534)
....+.|+||...... + ....+.++|++|+|+|+.++... ..+..++.. . ..++|+|+|
T Consensus 65 ~~~~i~Dt~G~~~~~~--~------------~~~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv 128 (181)
T 2h17_A 65 TRFLMWDIGGQESLRS--S------------WNTYYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIF 128 (181)
T ss_dssp EEEEEEEESSSGGGTC--G------------GGGGGTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred EEEEEEECCCCHhHHH--H------------HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhCCCeEEEE
Confidence 4456789999643211 1 12346799999999999987443 233333221 1 367999999
Q ss_pred EeCCCCCChhhHHHHHHHHh----ccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 281 LNKVDLVPIWVTQRWVAILS----KEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~----~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+||+||........+.+.+. .......|.+|++++.|+++|++.|.+
T Consensus 129 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 129 ANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred EECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 99999976422233333332 122345788999999999999888753
No 143
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.22 E-value=1.4e-06 Score=78.69 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=38.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++.... ...+..|.+.....+..+. .+.|+||||..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 4689999999999999999999975532 1222233333223333443 68999999954
No 144
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.22 E-value=1.6e-06 Score=78.24 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=41.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++..... ..+..|.+.....+..+. .+.|+||||..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 46899999999999999999999765422 223334444334444433 68999999964
No 145
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.21 E-value=4.7e-06 Score=75.18 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=66.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeC---ccEEEEeCCCcccCCCCCcchHHHHHcc-
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRG- 409 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~g- 409 (534)
..++|+++|.+|||||||+|+|.+... ....++++.... .+..+ ..+.|+||||..... ......+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----~~~~~~~~~~ 81 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG----AMREQYMRAG 81 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS----CCHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH----HHHHHHHhhC
Confidence 568999999999999999999997642 234444444321 22333 268899999965332 112233322
Q ss_pred --ccccccCCCch------hhHHHHHHhh---ccceeeehcCCCCCCC---HHHHHHHHHHHhC
Q psy6781 410 --VVRVENIDDPV------QYIDAVLERI---KKVHLVKTYGIDEWED---TEDFLKKLAFKWG 459 (534)
Q Consensus 410 --vv~v~~i~~~~------~~i~~iL~r~---~k~~l~~~ykId~~~d---~~efLe~la~k~g 459 (534)
++-+-.+.++. .++..++... ..+.+.+.+|+|.... ..+....++...+
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 145 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH 145 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 22222223322 2222333322 3567888899986431 1233455666554
No 146
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.21 E-value=3.3e-06 Score=77.95 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=68.3
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLN 282 (534)
...+.|+||...... .....+.++|++|+|+|+.++.... .+..++ .. ...+.|+|+|+|
T Consensus 75 ~~~i~Dt~G~~~~~~--------------~~~~~~~~~d~vi~v~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~n 138 (193)
T 2oil_A 75 KAQIWDTAGLERYRA--------------ITSAYYRGAVGALLVFDLTKHQTYA--VVERWLKELYDHAEATIVVMLVGN 138 (193)
T ss_dssp EEEEEEESCCCTTCT--------------THHHHHTTCCEEEEEEETTCHHHHH--THHHHHHHHHTTSCTTCEEEEEEE
T ss_pred EEEEEeCCCchhhhh--------------hhHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEE
Confidence 456789999643211 1123567999999999998764321 223332 22 235789999999
Q ss_pred CCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 283 KVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 283 KiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+||.+.. ........+........|.+|++++.|++.|++.|.+.+
T Consensus 139 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99997532 112222233333334567789999999999998887644
No 147
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=1.5e-06 Score=78.82 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=65.7
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVLN 282 (534)
...+.|+||..... ......+.++|++|+|+|+.++.... .+..+ +.. ...+.|+++|+|
T Consensus 61 ~~~~~Dt~G~~~~~--------------~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~n 124 (180)
T 2g6b_A 61 KLQMWDTAGQERFR--------------SVTHAYYRDAHALLLLYDVTNKASFD--NIQAWLTEIHEYAQHDVALMLLGN 124 (180)
T ss_dssp EEEEEECCCC----------------------CCGGGCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCcHHHH--------------HHHHHHccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEE
Confidence 45678999953211 11234567999999999998764322 22222 222 225789999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+... .......+.+.+....+.+|++++.|+++|++.|.+.+.
T Consensus 125 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp CCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999985321 111122222222234677899999999999988876543
No 148
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=1.9e-06 Score=78.06 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=41.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++.........|.++.... .+..+. .+.++||||..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 56899999999999999999999876543344454444332 223333 68899999964
No 149
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.20 E-value=1.3e-06 Score=94.03 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=64.7
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||+++... ......++..+..+..+|+||+|+|+.+++......+.+.+. .+|+|+|+||+|
T Consensus 272 ~~v~liDT~G~~~~~~------~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~~piivV~NK~D 341 (462)
T 3geh_A 272 IPVQVLDTAGIRETSD------QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK----HRPLILVMNKID 341 (462)
T ss_dssp EEEEECC--------------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----TSCEEEEEECTT
T ss_pred EEEEEEECCccccchh------HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----CCcEEEEEECCC
Confidence 3456889999865432 123334455667788999999999999887654444444442 479999999999
Q ss_pred CCChhhHHHHHHHHhcc-CCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 286 LVPIWVTQRWVAILSKE-YPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~-~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|.+..... .+... .....+.+|++++.|++.|.+.|.+.+
T Consensus 342 l~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 342 LVEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp SSCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCcchhhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 98764322 11111 112357789999999999999888654
No 150
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.20 E-value=1.6e-06 Score=78.36 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=41.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeCc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~~---~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|.+.... ....|+.|.+.. .+.... .+.++||||...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence 4689999999999999999999987643 444555554432 333332 588999999643
No 151
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.20 E-value=4.4e-06 Score=75.44 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=69.1
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|+||...... ++ ...+.++|++++|+|+.++..... ..+..++.. ...+.|+++|+||
T Consensus 58 ~~~~~Dt~G~~~~~~-----------~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 123 (181)
T 2fn4_A 58 RLDILDTAGQEEFGA-----------MR---EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123 (181)
T ss_dssp EEEEEECCCTTTTSC-----------CH---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEEC
T ss_pred EEEEEECCCchhhHH-----------HH---HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 456789999543211 11 234568999999999987643211 112222222 2357899999999
Q ss_pred CCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 284 VDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 284 iDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+||.+... .......+........|.+|++++.|+++|++.|.+.+.
T Consensus 124 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 124 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp GGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99975321 122233333333445678899999999999998876554
No 152
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.20 E-value=3.2e-06 Score=77.90 Aligned_cols=108 Identities=17% Similarity=0.101 Sum_probs=69.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH----h-hCCCCcEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR----R-EKPHKHLFFI 280 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~----~-~~~~k~~IlV 280 (534)
....+.|+||... + ..+ ....+.++|++++|+|+.++... ..+..++. . ...+.|+++|
T Consensus 60 ~~l~i~Dt~G~~~-----~------~~~---~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv 123 (181)
T 1fzq_A 60 FKLNVWDIGGQRK-----I------RPY---WRSYFENTDILIYVIDSADRKRF--EETGQELTELLEEEKLSCVPVLIF 123 (181)
T ss_dssp EEEEEEECSSCGG-----G------HHH---HHHHHTTCSEEEEEEETTCGGGH--HHHHHHHHHHTTCGGGTTCCEEEE
T ss_pred EEEEEEECCCCHH-----H------HHH---HHHHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhhcCCCEEEE
Confidence 3456789999531 1 112 23456799999999999876432 22333322 1 1257899999
Q ss_pred EeCCCCCChhhHHHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 281 LNKVDLVPIWVTQRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+||+||.+........+.+.. ......|.+||+++.|++++.+.|.+.+
T Consensus 124 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred EECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 999999764333333333321 2234567899999999999999887644
No 153
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.19 E-value=1.6e-06 Score=77.45 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=67.1
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
...+.|+||...... .....+.++|++++|+|+.++..... ..+...+.....+.|+++|+||+|
T Consensus 55 ~~~l~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~D 120 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDA--------------ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID 120 (168)
T ss_dssp EEEEECCTTGGGTTC--------------CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGG
T ss_pred EEEEEcCCCcHhHHH--------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 456789999532211 01235568999999999987643221 111122222225789999999999
Q ss_pred CCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 286 LVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 286 Lv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|.+... .......+.+.+....|.+|++++.|+++|++.|.+.+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred cCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 975321 11122222222233567889999999999998887543
No 154
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.19 E-value=4.9e-07 Score=100.15 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=51.3
Q ss_pred cccceEEEEEecCCCchhHHHHhhhCCCcee------------------------------eCCCCCceeeeEEEEe---
Q psy6781 334 ERKQISVGFIGYPNVGKSSIINALRNKKVCK------------------------------TAPVPGETKVWQYITL--- 380 (534)
Q Consensus 334 ~~~~~~v~vvG~pnvGKSSliN~L~~~~~~~------------------------------v~~~pgtTk~~~~~~~--- 380 (534)
.+..++|+++|.+|+|||||+|+|+...... ....+|+|.+.....+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3567899999999999999999996421111 1125678876544333
Q ss_pred CccEEEEeCCCcccCC---CCCcchHHHHHcccccccc-----C--CCchhhHHHHHHhhccc-eeeehcCCCCCC
Q psy6781 381 MRRIYLIDCPGVVYDM---TNVETDTEKVLRGVVRVEN-----I--DDPVQYIDAVLERIKKV-HLVKTYGIDEWE 445 (534)
Q Consensus 381 ~~~i~liDtPGi~~p~---~~~~~~~e~vL~gvv~v~~-----i--~~~~~~i~~iL~r~~k~-~l~~~ykId~~~ 445 (534)
...+.|+||||...-. ......++.+|..+...+. + .........++.....+ .+.+.||+|...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 3578999999974211 1122334444433322221 1 12222233444555544 777899999754
No 155
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.18 E-value=2.4e-06 Score=75.83 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=65.3
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh--hCCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR--EKPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~--~~~~k~~IlVL 281 (534)
...+.|+||.... ..++ ...+.++|.+++|+|+.++.... .+..+ +.. ...++|+++|+
T Consensus 53 ~~~l~D~~G~~~~-----------~~~~---~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~ 116 (168)
T 1u8z_A 53 QIDILDTAGQEDY-----------AAIR---DNYFRSGEGFLCVFSITEMESFA--ATADFREQILRVKEDENVPFLLVG 116 (168)
T ss_dssp EEEEEECCC---C-----------HHHH---HHHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred EEEEEECCCcchh-----------HHHH---HHHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEE
Confidence 4568899995321 1122 23467899999999998764321 22222 222 12479999999
Q ss_pred eCCCCCChhh--HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 282 NKVDLVPIWV--TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 282 NKiDLv~~~~--~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||+||.+... .....+.. +.+....|.+|+.++.|+++|.+.|.+.+
T Consensus 117 nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 117 NKSDLEDKRQVSVEEAKNRA-DQWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ECGGGGGGCCSCHHHHHHHH-HHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ECccccccCccCHHHHHHHH-HHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 9999975321 11222222 22233467889999999999998887643
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.18 E-value=1.3e-06 Score=93.31 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=42.2
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCcee------------------------------eCCCCCceeeeEEEEe---C
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCK------------------------------TAPVPGETKVWQYITL---M 381 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~------------------------------v~~~pgtTk~~~~~~~---~ 381 (534)
+..++|+++|.+|+|||||+|+|+...... ....+|+|.+..+..+ +
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 457899999999999999999996432111 1123678877544332 4
Q ss_pred ccEEEEeCCCcc
Q psy6781 382 RRIYLIDCPGVV 393 (534)
Q Consensus 382 ~~i~liDtPGi~ 393 (534)
..+.|+||||..
T Consensus 95 ~~~~iiDTPGh~ 106 (439)
T 3j2k_7 95 KHFTILDAPGHK 106 (439)
T ss_pred eEEEEEECCChH
Confidence 579999999964
No 157
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.18 E-value=4.8e-06 Score=75.23 Aligned_cols=109 Identities=15% Similarity=0.104 Sum_probs=68.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||.......+ ...+..+|++|+|+|+.++...........+. ..+.|+++|+||+|
T Consensus 55 ~~~~l~Dt~G~~~~~~~~--------------~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~--~~~~p~ilv~nK~D 118 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMR--------------ARGAQVTDIVILVVAADDGVMPQTVEAINHAK--AANVPIIVAINKMD 118 (178)
T ss_dssp EEEEESCCCSSSSSSCSC--------------CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG--GGSCCEEEEEETTT
T ss_pred ceEEEEECCCCHHHHHHH--------------HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH--hCCCCEEEEEECcc
Confidence 345678999964322211 12356899999999998765433222222232 25789999999999
Q ss_pred CCCh--hhHHHHHHHHhc---cCC--eEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 286 LVPI--WVTQRWVAILSK---EYP--TIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 286 Lv~~--~~~~~wl~~l~~---~~p--~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|.+. .....++..+.. .+. ...|.+|++++.|+++|++.|.+.+.
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 119 KPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 9863 222223222111 111 35778999999999999988876544
No 158
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.18 E-value=2.1e-06 Score=76.59 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=41.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++..... ..+..|.+.....+... ..+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 46899999999999999999999754322 23445555443344433 368899999964
No 159
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.18 E-value=2.2e-06 Score=78.80 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=64.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh--hCCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR--EKPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~--~~~~k~~IlVL 281 (534)
...+.|+||.... .......+.++|++++|+|+.++.... .+..++ .. ...++|+++|+
T Consensus 70 ~~~l~Dt~G~~~~--------------~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~ 133 (190)
T 3con_A 70 LLDILDTAGQEEY--------------SAMRDQYMRTGEGFLCVFAINNSKSFA--DINLYREQIKRVKDSDDVPMVLVG 133 (190)
T ss_dssp EEEEEECCC-------------------------CTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred EEEEEECCChHHH--------------HHHHHHhhCcCCEEEEEEECcCHHHHH--HHHHHHHHHHHHhCCCCCeEEEEE
Confidence 3567899994321 111234577999999999998764322 223222 22 12478999999
Q ss_pred eCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||.+..........+.+.+...+|.+|+.++.|+++|++.|.+.+.
T Consensus 134 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp ECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999976322222222222222234677899999999999988876554
No 160
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.18 E-value=1.7e-06 Score=79.87 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=68.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh-h--CCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR-E--KPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~-~--~~~k~~IlVLN 282 (534)
...+.||||.... ..++ ...+.++|++|+|+|+.++..... ..+...+.. . ..+.|+|+|+|
T Consensus 57 ~~~l~Dt~G~~~~-----------~~~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~n 122 (199)
T 2gf0_A 57 TLQITDTTGSHQF-----------PAMQ---RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122 (199)
T ss_dssp EEEEEECCGGGSC-----------HHHH---HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEE
T ss_pred EEEEEeCCChHHh-----------HHHH---HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4567899995321 1122 234568999999999987643221 112222222 1 24689999999
Q ss_pred CCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+..........+...+....|.+|+.++.|+++|++.|.+.+.
T Consensus 123 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 123 KCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp CTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred CccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 999976432222222232222335678899999999999999887654
No 161
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.17 E-value=3e-06 Score=78.87 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=67.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhhC----CCCcEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRREK----PHKHLFFI 280 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~~----~~k~~IlV 280 (534)
...+.|+||....... ....+.++|++|+|+|+.++..... ..+..+..... .+.|+|+|
T Consensus 58 ~~~l~Dt~G~~~~~~~--------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv 123 (207)
T 1vg8_A 58 TMQIWDTAGQERFQSL--------------GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123 (207)
T ss_dssp EEEEEEECSSGGGSCS--------------CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEE
T ss_pred EEEEEeCCCcHHHHHh--------------HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 4667899995432110 1124568999999999987643221 11122222111 46899999
Q ss_pred EeCCCCCChhhHHHHHHHHhc-cCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 281 LNKVDLVPIWVTQRWVAILSK-EYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~~-~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+||+||.+..........+.. ......|.+|++++.|++.|++.|.+.+.
T Consensus 124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp EECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999753322222222222 33344678899999999999988876543
No 162
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.17 E-value=1.5e-06 Score=80.44 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=67.9
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
..+.||||...... .....+.++|++|+|+|+.++..... ..+...+.....+.|+|+|+||+|
T Consensus 73 ~~i~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 138 (194)
T 3reg_A 73 LHLWDTAGQEEYDR--------------LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138 (194)
T ss_dssp EEEEEECCSGGGTT--------------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGG
T ss_pred EEEEECCCcHHHHH--------------HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 46789999532111 11224568999999999987644322 122233444456799999999999
Q ss_pred CCCh---hhHHHHHHHHhccCCeE-EeeeccCCCCChHHHHHHHHHHhh
Q psy6781 286 LVPI---WVTQRWVAILSKEYPTI-AFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 286 Lv~~---~~~~~wl~~l~~~~p~v-~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|.+. .........+.+.+... .|.+|++++.|+++|++.|.+.+.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 139 LRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp GCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 9753 11122222222222222 677899999999999988876543
No 163
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.17 E-value=5.3e-06 Score=78.20 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=70.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVLN 282 (534)
...+.||||...... + + ...+.++|++|+|+|+.++....+ +..+ +.. ...++|+|+|+|
T Consensus 62 ~~~l~Dt~G~~~~~~--~---------~---~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~n 125 (218)
T 4djt_A 62 KFNVWDTAGQEKKAV--L---------K---DVYYIGASGAILFFDVTSRITCQN--LARWVKEFQAVVGNEAPIVVCAN 125 (218)
T ss_dssp EEEEEEECSGGGTSC--C---------C---HHHHTTCSEEEEEEETTCHHHHHT--HHHHHHHHHHHHCSSSCEEEEEE
T ss_pred EEEEEecCCchhhch--H---------H---HHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhcCCCCCEEEEEE
Confidence 356789999643221 0 1 124568999999999987654322 2222 221 234689999999
Q ss_pred CCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+.. ........+........|.+|++++.|+++|++.|.+.+.
T Consensus 126 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp CTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred CCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHh
Confidence 99998652 3334444454544556788999999999999998887554
No 164
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.17 E-value=6.3e-07 Score=92.84 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
....|+|+|+||||||||+|+|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999999985
No 165
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.17 E-value=2.7e-06 Score=77.38 Aligned_cols=110 Identities=15% Similarity=0.069 Sum_probs=68.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.|+||...... + ....+.++|++|+|+|+.++...... .+...+....+++|+|+|+||+
T Consensus 54 ~~~i~Dt~G~~~~~~--~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 119 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDR--L------------RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 119 (186)
T ss_dssp EEEEECCCCSGGGTT--T------------GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECH
T ss_pred EEEEEECCCCHhHHH--H------------HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcc
Confidence 345789999643211 0 11245689999999999876433221 1223333334589999999999
Q ss_pred CCCChhhHHH-------------HHHHHhccCCe-EEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 285 DLVPIWVTQR-------------WVAILSKEYPT-IAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 285 DLv~~~~~~~-------------wl~~l~~~~p~-v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||.+...... ....+...+.. ..|.+|++++.|+++|++.|.+.+.
T Consensus 120 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 9976432111 11122222232 5678899999999999998876553
No 166
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.17 E-value=2.9e-06 Score=78.77 Aligned_cols=109 Identities=15% Similarity=0.084 Sum_probs=68.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh-hCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR-EKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~-~~~~k~~IlVLNKi 284 (534)
...+.|+||... + ..+ ....+.++|++|+|+|+.++..... ..+...+.. ...+.|+|+|+||+
T Consensus 76 ~l~l~Dt~G~~~-----~------~~~---~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~ 141 (192)
T 2il1_A 76 RLQIWDTAGQER-----F------NSI---TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 141 (192)
T ss_dssp EEEEEEECCSGG-----G------HHH---HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEeCCCcHH-----H------HHH---HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 456789999421 1 111 2345679999999999987654322 111122322 23478999999999
Q ss_pred CCCChhh-HHHHHHHHhccC-CeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 285 DLVPIWV-TQRWVAILSKEY-PTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 285 DLv~~~~-~~~wl~~l~~~~-p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||.+... .......+.+.+ ....|.+|++++.|+++|++.|.+.+
T Consensus 142 Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 142 DCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp GGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9975321 122233333332 34567889999999999998887543
No 167
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.16 E-value=1.8e-06 Score=78.06 Aligned_cols=108 Identities=13% Similarity=0.060 Sum_probs=67.8
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---HhhCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RREKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~~~~~k~~IlVLNK 283 (534)
...+.|+||....... ....+.++|++|+|+|+.++... ..+..++ ....++.|+|+|+||
T Consensus 59 ~~~i~Dt~G~~~~~~~--------------~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK 122 (181)
T 3tw8_B 59 KLQIWDTAGQERFRTI--------------TSTYYRGTHGVIVVYDVTSAESF--VNVKRWLHEINQNCDDVCRILVGNK 122 (181)
T ss_dssp EEEEEEETTGGGCSSC--------------CGGGGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHCTTSEEEEEEEC
T ss_pred EEEEEcCCCchhhhhh--------------HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 4567899995432211 11245689999999999876433 2233333 334567899999999
Q ss_pred CCCCChhhH-HHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 284 VDLVPIWVT-QRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 284 iDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+||.+.... ......+........|.+|+.++.|+++|++.|.+.+.
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 123 NDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999754211 11111222222234677899999999999998876544
No 168
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.16 E-value=4.2e-06 Score=78.54 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=67.8
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLN 282 (534)
...+.|+||... + ..+ ....+.++|++|+|+|+.++.... .+..++ .. ...+.|+|||+|
T Consensus 79 ~l~i~Dt~G~~~-----~------~~~---~~~~~~~~d~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~N 142 (201)
T 2hup_A 79 KLQIWDTAGQER-----F------RTI---TQSYYRSANGAILAYDITKRSSFL--SVPHWIEDVRKYAGSNIVQLLIGN 142 (201)
T ss_dssp EEEEECCTTCGG-----G------HHH---HHHHHTTCSEEEEEEETTBHHHHH--THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCcHh-----H------HHH---HHHHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEE
Confidence 456789999521 1 112 234567999999999998764321 222232 22 235789999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCe-EEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPT-IAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~-v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+... ...-...+.+.+.. ..|.+|++++.|+++|++.|.+.+.
T Consensus 143 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999975311 11111222222333 5678899999999999998876554
No 169
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.16 E-value=1.5e-06 Score=92.61 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=77.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||..+... +.....+.....+..+|++|+|+|+ ........+.+.+.. .++|+|+|+||+|+
T Consensus 84 ~l~liDTpG~~d~~~-------l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl 152 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGE-------LGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDV 152 (423)
T ss_dssp EEEEEECSSTTCCCT-------TCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTT
T ss_pred eEEEEECcCCCcccc-------hhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCC
Confidence 567899999764321 1112234466778899999999999 222222233344443 47999999999999
Q ss_pred CChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 287 VPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 287 v~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
.+.... ...+.+.+.+...+|.+|++++.|+++|++.|.+.++
T Consensus 153 ~~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 153 LGEKAE-ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp TTCCCT-HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred CCccHH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 865433 4445555555555678899999999999999988764
No 170
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.16 E-value=2.7e-06 Score=76.02 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=67.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh---hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR---EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~---~~~~k~~IlVLN 282 (534)
...+.|+||..... .+ ....+.++|++|+|+|+.++..... ..+...+.. ..+++|+++|+|
T Consensus 52 ~~~~~Dt~G~~~~~-----------~~---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 52 TLQITDTTGSHQFP-----------AM---QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp EEEEEECCSCSSCH-----------HH---HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred EEEEEECCCchhhH-----------HH---HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 45688999964211 11 2234668999999999987643211 122222222 124789999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+... .......+...+....|.+|+.++.|+++|++.|.+.+.
T Consensus 118 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 999975421 112222232222345678899999999999999886543
No 171
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.16 E-value=9e-06 Score=85.57 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=72.1
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC-CcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT-RCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s-~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
....+.||||. ..+...+...+..+|++|+|+||.++... .......++.. ...+|+|+|+||+
T Consensus 83 ~~i~iiDtPGh--------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~~~iivviNK~ 147 (410)
T 1kk1_A 83 RRVSFIDAPGH--------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQKNIIIAQNKI 147 (410)
T ss_dssp EEEEEEECSSH--------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECG
T ss_pred cEEEEEECCCh--------------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEECc
Confidence 45678899993 12334556677899999999999976411 11111112222 1235789999999
Q ss_pred CCCChhh----HHHHHHHHhcc--CCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 285 DLVPIWV----TQRWVAILSKE--YPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 285 DLv~~~~----~~~wl~~l~~~--~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
||.+... ...+.+++... ....+|.+|+.++.|++.|++.|...++.
T Consensus 148 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 148 ELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 9998643 22333344321 12346788999999999999999886653
No 172
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.16 E-value=2.9e-06 Score=78.81 Aligned_cols=109 Identities=11% Similarity=0.079 Sum_probs=67.5
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiD 285 (534)
..+.|+||...... + + ...+.++|++|+|+|+.++....+. .+...+....++.|+|+|+||+|
T Consensus 70 ~~i~Dt~G~~~~~~--~---------~---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 135 (201)
T 2q3h_A 70 LQLCDTAGQDEFDK--L---------R---PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSD 135 (201)
T ss_dssp EEEEECCCSTTCSS--S---------G---GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGG
T ss_pred EEEEECCCCHHHHH--H---------h---HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHh
Confidence 44789999643222 1 1 1245689999999999876443221 12222333445899999999999
Q ss_pred CCChhh-------------HHHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 286 LVPIWV-------------TQRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 286 Lv~~~~-------------~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|.+... .......+...+. ...|.+|++++.|+++|++.|.+.+.
T Consensus 136 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 136 LREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp GGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 975311 1111222222222 24678899999999999988876543
No 173
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.16 E-value=4.8e-06 Score=76.73 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=68.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVLN 282 (534)
...+.|+||...... + ....+.++|++|+|+|+.++.... .+..+ +.. ...++|+|+|+|
T Consensus 72 ~~~l~Dt~G~~~~~~--~------------~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~n 135 (189)
T 2gf9_A 72 KLQIWDTAGQERYRT--I------------TTAYYRGAMGFLLMYDIANQESFA--AVQDWATQIKTYSWDNAQVILVGN 135 (189)
T ss_dssp EEEEEECCSCCSSCC--S------------GGGGGTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCcHHHhh--h------------HHHhccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEE
Confidence 456789999543222 1 123456899999999998764322 22233 222 225789999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+... .......+.+.+....|.+|++++.|+++|++.|.+.+.
T Consensus 136 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999975321 112222232222345678899999999999998876543
No 174
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.16 E-value=3.2e-06 Score=80.13 Aligned_cols=110 Identities=11% Similarity=0.004 Sum_probs=62.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.||||.... ..++ ...+.++|++|+|+|+.++...... .+...+.....+.|+|+|+||+
T Consensus 83 ~l~l~Dt~G~~~~-----------~~~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 148 (214)
T 2j1l_A 83 HLHIWDTAGQDDY-----------DRLR---PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKT 148 (214)
T ss_dssp EEEEEEC-----------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECG
T ss_pred EEEEEECCCchhh-----------hHHH---HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 4557899994321 1111 2346799999999999876433211 1222233334579999999999
Q ss_pred CCCChhhHHHH-------------HHHHhccCCe-EEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 285 DLVPIWVTQRW-------------VAILSKEYPT-IAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 285 DLv~~~~~~~w-------------l~~l~~~~p~-v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||.+....... ...+.+.+.. ..|.+|++++.|+++|++.|.+.+.
T Consensus 149 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp GGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99865322111 1222222332 5678899999999999988876543
No 175
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.16 E-value=2.2e-05 Score=71.58 Aligned_cols=122 Identities=14% Similarity=0.022 Sum_probs=71.7
Q ss_pred eeEEecCCCCcCCCchhhhh-hhhHHHHHHHHHHH-hhhcCEEEEEEeCCCCCC-----------CCcHHHHHHHHhhCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMA-AGQSKRIWGELYKV-IDSSDVVVYVLDVRDPMG-----------TRCAHIENFLRREKP 273 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~-a~lskr~~~el~kv-I~nsDvVL~VvDAR~Pl~-----------s~~~~le~~L~~~~~ 273 (534)
...+.||||+..... |-.+ ...-..++...+.. ++.+++|+.|+|+..... ..+..+.+++.. .
T Consensus 45 ~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 121 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMG-LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--L 121 (190)
T ss_dssp TEEEEECCCBSCCTT-SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--T
T ss_pred CEEEEECCCcccccc-CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--c
Confidence 456789999643211 0000 01123344444444 777889999999753210 000112222322 5
Q ss_pred CCcEEEEEeCCCCCChh--hHHHHHHHHhccCC---eEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 274 HKHLFFILNKVDLVPIW--VTQRWVAILSKEYP---TIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 274 ~k~~IlVLNKiDLv~~~--~~~~wl~~l~~~~p---~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
+.|+++|+||+||.+.. ....+.+.+...+. ..+|.+|++++.|+++|.+.|.+.+..
T Consensus 122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 122 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 79999999999998743 34445444432211 235788999999999999988776543
No 176
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.15 E-value=4e-06 Score=95.21 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=74.2
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHh-hhcCEEEEEEeCCCCCCCCcH-HHHHHHHhhCCCCcEEEEEeC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVI-DSSDVVVYVLDVRDPMGTRCA-HIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI-~nsDvVL~VvDAR~Pl~s~~~-~le~~L~~~~~~k~~IlVLNK 283 (534)
.+.+++||||++......... .....+-+-+...+ ..+|+||+|+||+.++...+. .+.+.+.. .++|+|+|+||
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~-di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNK 226 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPP-DIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITK 226 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCC-HHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEEC
T ss_pred CceEEEECCCcccCCCCCCcH-HHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeC
Confidence 467899999998732100000 00111111222222 689999999999988877664 45555543 47899999999
Q ss_pred CCCCChhhH-HHHHHHHhccC----C-eEEeeeccCCCCChHHHHHHHHH
Q psy6781 284 VDLVPIWVT-QRWVAILSKEY----P-TIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 284 iDLv~~~~~-~~wl~~l~~~~----p-~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+|+++.... ..... .+.+ + ..++.+||.++.|++.|.+.+.+
T Consensus 227 iDlv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 227 LDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp TTSSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred cccCCcchhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 999875422 22221 1111 2 34567899999999999998876
No 177
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.15 E-value=2.3e-06 Score=77.71 Aligned_cols=107 Identities=13% Similarity=0.013 Sum_probs=66.0
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiD 285 (534)
..+.|+||...... + ....+.++|++|+|+|+.++...... .+...+....++.|+++|+||+|
T Consensus 58 ~~i~Dt~G~~~~~~--~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (182)
T 3bwd_D 58 LGLWDTAGQEDYNR--L------------RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 123 (182)
T ss_dssp CEEECCCC-CTTTT--T------------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred EEEEECCCChhhhh--h------------HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechh
Confidence 44789999543211 1 11245689999999999876443221 12233333345799999999999
Q ss_pred CCChhhH-----------HHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHH
Q psy6781 286 LVPIWVT-----------QRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 286 Lv~~~~~-----------~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
|.+.... ..-...+...+. ...|.+|++++.|+++|++.|.+.
T Consensus 124 l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 124 LRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp HHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9754321 111122222222 246788999999999999888754
No 178
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.15 E-value=9.9e-06 Score=86.36 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=62.7
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCC-------CCcHHHHHHHHhhCCCCc
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMG-------TRCAHIENFLRREKPHKH 276 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~-------s~~~~le~~L~~~~~~k~ 276 (534)
+..+..+.||||.. ++...+...+..+|++|+|+||++... .........+. ..++|
T Consensus 93 ~~~~~~iiDTPGh~--------------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~--~~~v~ 156 (439)
T 3j2k_7 93 EKKHFTILDAPGHK--------------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK--TAGVK 156 (439)
T ss_pred CCeEEEEEECCChH--------------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH--HcCCC
Confidence 44577899999942 223445556789999999999998653 11112222222 24566
Q ss_pred -EEEEEeCCCCCCh----hhHH----HHHHHHhc-cC----CeEEeeeccCCCCChHHH
Q psy6781 277 -LFFILNKVDLVPI----WVTQ----RWVAILSK-EY----PTIAFHASMTHPFGKGSI 321 (534)
Q Consensus 277 -~IlVLNKiDLv~~----~~~~----~wl~~l~~-~~----p~v~f~~Sa~~~~gi~~L 321 (534)
+|+|+||+||.+. .... ....++.. .+ ...++.+||.++.|+.+|
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l 215 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQ 215 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccc
Confidence 8999999999642 1111 12222222 12 234678899999999873
No 179
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.15 E-value=2e-06 Score=80.32 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=36.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++... ..+.+..|.+.....+..+. .+.|+||||..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 578999999999999999999997653 23445556554444444432 58899999954
No 180
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.15 E-value=3.1e-06 Score=78.45 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=69.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---h-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---R-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~-~~~~k~~IlVLN 282 (534)
...+.|+||...... .....+.++|++|+|+|+.++... ..+..++. . ...+.|+++|+|
T Consensus 73 ~~~i~Dt~G~~~~~~--------------~~~~~~~~~d~iilV~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~N 136 (192)
T 2fg5_A 73 KFLIWDTAGQERFHS--------------LAPMYYRGSAAAVIVYDITKQDSF--YTLKKWVKELKEHGPENIVMAIAGN 136 (192)
T ss_dssp EEEEEEECCSGGGGG--------------GTHHHHTTCSEEEEEEETTCTHHH--HHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEcCCCchhhHh--------------hhHHhhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 456789999532111 122356789999999999876432 23333332 2 224789999999
Q ss_pred CCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+.. ........+.+.+...+|.+|++++.|+++|++.|.+.+.
T Consensus 137 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 137 KCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp CGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred CcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 99997532 1112222233334445678899999999999999886543
No 181
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.15 E-value=4.1e-06 Score=76.03 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=67.8
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh--hCCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR--EKPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~--~~~~k~~IlVL 281 (534)
...+.|+||.... ..++ ...+.++|++|+|+|+.++.... .+..+ +.. ...++|+++|+
T Consensus 67 ~~~l~Dt~G~~~~-----------~~~~---~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~ 130 (187)
T 2a9k_A 67 QIDILDTAGQEDY-----------AAIR---DNYFRSGEGFLCVFSITEMESFA--ATADFREQILRVKEDENVPFLLVG 130 (187)
T ss_dssp EEEEEECCCTTCC-----------HHHH---HHHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EEEEEECCCCccc-----------HHHH---HHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4568899995321 1122 23566899999999998764321 22222 222 12478999999
Q ss_pred eCCCCCChhh--HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPIWV--TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~~~--~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||.+... .....+.+ +.+....|.+|++++.|+++|++.|.+.+.
T Consensus 131 nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 131 NKSDLEDKRQVSVEEAKNRA-EQWNVNYVETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp ECGGGGGGCCSCHHHHHHHH-HHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ECccccccCccCHHHHHHHH-HHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999975321 12222222 233345678899999999999988876543
No 182
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.15 E-value=2.4e-06 Score=79.55 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=42.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~ 394 (534)
+.++|+++|.+|||||||+|+|.+.....+.+..|.+.. .....+..+.++||||...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE-ELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEE-EEEETTEEEEEEECCCSGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeE-EEEECCEEEEEEECCCCHH
Confidence 467999999999999999999998766555556665532 1222235789999999854
No 183
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.14 E-value=7.1e-07 Score=88.39 Aligned_cols=116 Identities=15% Similarity=0.055 Sum_probs=69.0
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||......... .......+++. +-...++|+||+|+|+.++ .++..+..++.. .++|+|+|+||+|
T Consensus 48 ~~~~lvDtpG~~~~~~~~~-~~~~~e~i~~~-~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~--~~~pvilv~NK~D 121 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAE-GISQDEQIAAQ-SVIDLEYDCIINVIDACHL--ERHLYLTSQLFE--LGKPVVVALNMMD 121 (256)
T ss_dssp EEEEEEECCCCSSCC-------CHHHHHHHH-HHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTT--SCSCEEEEEECHH
T ss_pred eEEEEEeCCCccccccccc-CCCHHHHHHHH-HHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHH--cCCCEEEEEEChh
Confidence 3567899999754322000 00112223222 2233789999999999863 222333344433 4799999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+++........+.+.+.....++.+|+.++.|+++|++.|.+
T Consensus 122 l~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (256)
T 3iby_A 122 IAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLH 163 (256)
T ss_dssp HHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHT
T ss_pred cCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 975432111122232322334677899999999999888864
No 184
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.14 E-value=6.4e-06 Score=77.02 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=38.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee-EEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW-QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~-~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|.+..... ...|.++... ..+..+. .+.|+||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 46899999999999999999999765422 2223332221 2233333 68899999964
No 185
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.14 E-value=5.5e-06 Score=76.59 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=66.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLN 282 (534)
...+.|+||...... .....+.++|++|+|+|+.++.... .+..++ .. ...+.|+++|+|
T Consensus 71 ~~~i~Dt~G~~~~~~--------------~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~n 134 (191)
T 2a5j_A 71 KLQIWDTAGQESFRS--------------ITRSYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSSSNMVIMLIGN 134 (191)
T ss_dssp EEEEECCTTGGGTSC--------------CCHHHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCchhhhh--------------hHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEE
Confidence 456789999532211 0123567899999999998764322 222332 22 235789999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+||.+... .......+...+....|.+|++++.|+++|++.|.+.+
T Consensus 135 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 135 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999965321 11222222222233567789999999999998886544
No 186
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.13 E-value=3.2e-06 Score=77.93 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=66.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHcccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGVV 411 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gvv 411 (534)
..++|+++|.+|||||||+|+|++..... ..+..|.+.....+..+. .+.|+||||...-. .......+..+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~d 95 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR---KSMVQHYYRNVH 95 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH---TTTHHHHHTTCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh---hhhhHHHhcCCC
Confidence 56899999999999999999999755322 222333333333333433 68999999964211 012233333321
Q ss_pred c---cccCCCc------hhhHHHHHHhh---ccceeeehcCCCCCCC---HHHHHHHHHHHhC
Q psy6781 412 R---VENIDDP------VQYIDAVLERI---KKVHLVKTYGIDEWED---TEDFLKKLAFKWG 459 (534)
Q Consensus 412 ~---v~~i~~~------~~~i~~iL~r~---~k~~l~~~ykId~~~d---~~efLe~la~k~g 459 (534)
. +-.+.++ ..++..++... ..+.+.+.+|+|.... ..+....++...|
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 158 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS 158 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC
Confidence 1 1112222 12233333332 3567888899996431 2334455665554
No 187
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.13 E-value=4.5e-06 Score=74.52 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=37.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|.+..... ..+..+.+.. ..+... ..+.++||||..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCch
Confidence 36889999999999999999999865321 1111122211 122222 258899999964
No 188
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.13 E-value=2.4e-06 Score=78.01 Aligned_cols=107 Identities=12% Similarity=0.006 Sum_probs=67.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLN 282 (534)
...+.|+||... + . ......+.++|++|+|+|+.++.... .+..++ .. ...+.|+++|+|
T Consensus 60 ~~~l~Dt~G~~~-----~------~---~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~n 123 (186)
T 2bme_A 60 KLQIWDTAGQER-----F------R---SVTRSYYRGAAGALLVYDITSRETYN--ALTNWLTDARMLASQNIVIILCGN 123 (186)
T ss_dssp EEEEEEECCSGG-----G------H---HHHHTTSTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCcHH-----H------H---HHHHHHHhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEE
Confidence 456789999531 1 1 12334577999999999998764432 222222 22 236789999999
Q ss_pred CCCCCChhh--HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWV--TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~--~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+... ..... .+........|.+|++++.|++++.+.|.+.+.
T Consensus 124 K~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 124 KKDLDADREVTFLEAS-RFAQENELMFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp CGGGGGGCCSCHHHHH-HHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcccccccccCHHHHH-HHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 999964321 11222 222233445678899999999999888876543
No 189
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.13 E-value=3.5e-06 Score=76.80 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=57.0
Q ss_pred HhhhcCEEEEEEeCCCCCCCCc--HHHHHHHH-hhCCCCcEEEEEeCCCCCChh-hHHHHHHHHhccCCeEEeeeccC-C
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRC--AHIENFLR-REKPHKHLFFILNKVDLVPIW-VTQRWVAILSKEYPTIAFHASMT-H 314 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~-~~~~~k~~IlVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~-~ 314 (534)
.+.++|++|+|+|+.++..... ..+..++. ....+.|+|+|+||+||.+.. ........+.+.+....|.+|++ +
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (183)
T 3kkq_A 86 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDP 165 (183)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSS
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCC
Confidence 4668999999999987643211 11222222 124678999999999997532 11222222222222346778999 9
Q ss_pred CCChHHHHHHHHHHh
Q psy6781 315 PFGKGSIINLLRQFS 329 (534)
Q Consensus 315 ~~gi~~Li~~L~~~~ 329 (534)
+.|++++++.|.+.+
T Consensus 166 ~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 166 PLNVDKTFHDLVRVI 180 (183)
T ss_dssp CBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998887654
No 190
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.13 E-value=5.3e-06 Score=74.92 Aligned_cols=109 Identities=11% Similarity=0.039 Sum_probs=66.7
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh-h----CCCCcEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR-E----KPHKHLFFI 280 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~-~----~~~k~~IlV 280 (534)
...+.|+||... + . ......+.++|++++|+|+.++..... ..+...+.. . ..+.|+++|
T Consensus 57 ~~~i~Dt~G~~~-----~------~---~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v 122 (177)
T 1wms_A 57 TMQIWDTAGQER-----F------R---SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122 (177)
T ss_dssp EEEEEECCCCGG-----G------H---HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEE
T ss_pred EEEEEeCCCchh-----h------h---hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEE
Confidence 456789999431 1 1 112245678999999999987643221 111111211 1 157899999
Q ss_pred EeCCCCCChhhHHHHHHHHhc-cCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 281 LNKVDLVPIWVTQRWVAILSK-EYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 281 LNKiDLv~~~~~~~wl~~l~~-~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+||+||.+..........+.. ......|.+|++++.|++++++.|.+.+
T Consensus 123 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp EECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999743221222222222 3334467889999999999988887644
No 191
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.12 E-value=5.6e-06 Score=77.77 Aligned_cols=109 Identities=15% Similarity=0.100 Sum_probs=68.3
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.||||...... + ....+.++|++|+|+|+.++.+... ..+...+....+++|+|+|+||+
T Consensus 74 ~~~i~Dt~G~~~~~~--~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 139 (207)
T 2fv8_A 74 ELALWDTAGQEDYDR--L------------RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKK 139 (207)
T ss_dssp EEEEEECTTCTTCTT--T------------GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECG
T ss_pred EEEEEECCCcHHHHH--H------------HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEch
Confidence 455789999643221 0 1124568999999999987643221 11223333334589999999999
Q ss_pred CCCChhhHHHHHHHH-------------hccCCe-EEeeeccCCCCChHHHHHHHHHHh
Q psy6781 285 DLVPIWVTQRWVAIL-------------SKEYPT-IAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 285 DLv~~~~~~~wl~~l-------------~~~~p~-v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||.+......++..+ ...... ..|.+|++++.|+++|++.|.+.+
T Consensus 140 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp GGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 997653322222211 111222 467889999999999999887654
No 192
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.12 E-value=5.8e-07 Score=98.25 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=72.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc---------------eeeC------CCCCceeee---EEEEeCccEEEEeCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV---------------CKTA------PVPGETKVW---QYITLMRRIYLIDCPG 391 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~---------------~~v~------~~pgtTk~~---~~~~~~~~i~liDtPG 391 (534)
...+|+|+|.+|+|||||+|+|+.... ..+. ..+|+|... .+...+..+.|+||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 467899999999999999999962110 0011 124555432 2222345799999999
Q ss_pred cccCCCCCcchHHHHHcccccc-------ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 392 VVYDMTNVETDTEKVLRGVVRV-------ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 392 i~~p~~~~~~~~e~vL~gvv~v-------~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
...-. ......+..+..+ ..+......+...+.....+.+.+.||+|... +..+.++.+....|.
T Consensus 92 ~~df~----~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 92 HADFT----EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp STTCC----HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred chhHH----HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 75432 2233333332111 11111122334455566678889999999753 567778888887764
No 193
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.12 E-value=4.5e-06 Score=74.73 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=38.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|.+.... ....|..+... ..+..+. .+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4689999999999999999999976532 22233333222 2333332 57889999964
No 194
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.12 E-value=3.7e-06 Score=76.33 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=39.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++... ....+.++.... .+.... .+.|+||||..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 468999999999999999999997653 223333333221 223333 68899999964
No 195
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.12 E-value=3.2e-06 Score=79.76 Aligned_cols=57 Identities=28% Similarity=0.283 Sum_probs=40.3
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceee--CCCCCceeeeEEEEeCccEEEEeCCCcccC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKT--APVPGETKVWQYITLMRRIYLIDCPGVVYD 395 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v--~~~pgtTk~~~~~~~~~~i~liDtPGi~~p 395 (534)
...++|+++|.+|||||||+|+|.+.....+ +..|+++... ....+.++||||....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~ 68 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKL 68 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHHH
Confidence 3568999999999999999999998653222 2233333222 3457899999998543
No 196
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.12 E-value=2.7e-06 Score=78.86 Aligned_cols=108 Identities=11% Similarity=0.020 Sum_probs=59.3
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---hhC----CCCcEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---REK----PHKHLF 278 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~~~----~~k~~I 278 (534)
....+.|+||... ........+.++|++|+|+|+.++... ..+..++. ... .+.|+|
T Consensus 73 ~~~~l~Dt~G~~~--------------~~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~pii 136 (208)
T 2yc2_C 73 VELFLLDTAGSDL--------------YKEQISQYWNGVYYAILVFDVSSMESF--ESCKAWFELLKSARPDRERPLRAV 136 (208)
T ss_dssp EEEEEEETTTTHH--------------HHHHHSTTCCCCCEEEEEEETTCHHHH--HHHHHHHHHHHHHCSCTTSCCEEE
T ss_pred EEEEEEECCCcHH--------------HHHHHHHHHhhCcEEEEEEECCCHHHH--HHHHHHHHHHHHhhcccccCCcEE
Confidence 3567889999521 111223457789999999999876532 23333332 222 478999
Q ss_pred EEEeCCCCCC-hhh-HHHHHHHHhccCCeEEeeeccCC-CCChHHHHHHHHHHh
Q psy6781 279 FILNKVDLVP-IWV-TQRWVAILSKEYPTIAFHASMTH-PFGKGSIINLLRQFS 329 (534)
Q Consensus 279 lVLNKiDLv~-~~~-~~~wl~~l~~~~p~v~f~~Sa~~-~~gi~~Li~~L~~~~ 329 (534)
+|+||+||.+ ... .......+.+.+....+.+|+++ +.|+++|++.|.+.+
T Consensus 137 lv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp EEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred EEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 9999999986 321 11222223333344567889999 999999988887644
No 197
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.12 E-value=3.6e-06 Score=77.86 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=59.9
Q ss_pred HHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh-hCCCCcEEEEEeCCCCCChh-hHHHHHHHHhccCCeEEeeeccC
Q psy6781 237 LYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR-EKPHKHLFFILNKVDLVPIW-VTQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 237 l~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~-~~~~k~~IlVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
....+.++|++|+|+|+.++..... ..+...+.. ...+.|+|+|+||+||.+.. ........+...+....|.+|++
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAK 168 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECC
Confidence 3456789999999999987643211 112222322 22578999999999996432 11222222323223456788999
Q ss_pred CCCChHHHHHHHHHHhh
Q psy6781 314 HPFGKGSIINLLRQFSK 330 (534)
Q Consensus 314 ~~~gi~~Li~~L~~~~~ 330 (534)
++.|+++|++.|.+.+.
T Consensus 169 ~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 169 ENISVRQAFERLVDAIC 185 (191)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999988876543
No 198
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.11 E-value=2.2e-06 Score=76.48 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=36.9
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE-eCccEEEEeCCCcc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT-LMRRIYLIDCPGVV 393 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~-~~~~i~liDtPGi~ 393 (534)
++|+++|.+|||||||+|+|++.......+..|.. ...+. ....+.++||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEECCEEEEEEEcCCCh
Confidence 47899999999999999999875543332222321 11122 23579999999974
No 199
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.11 E-value=3.7e-06 Score=77.45 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=65.3
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-H-HHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-A-HIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~-~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|+||... + .. ......+.++|++|+|+|+.++.+... . .+..+... ...++|+|+|+||
T Consensus 70 ~~~l~Dt~G~~~-----~-----~~---~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (189)
T 1z06_A 70 KIQLWDTAGQER-----F-----RK---SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 136 (189)
T ss_dssp EEEEEECCCSHH-----H-----HT---TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEEC
T ss_pred EEEEEECCCchh-----h-----hh---hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 456789999421 1 00 112345679999999999987643221 1 11222221 1457999999999
Q ss_pred CCCCChh-hHHHHHHHHhccCCeEEeeeccCCC---CChHHHHHHHHH
Q psy6781 284 VDLVPIW-VTQRWVAILSKEYPTIAFHASMTHP---FGKGSIINLLRQ 327 (534)
Q Consensus 284 iDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~---~gi~~Li~~L~~ 327 (534)
+||.+.. ........+...+....|.+|++++ .|+.++++.|.+
T Consensus 137 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 137 CDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred ccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 9996542 1223333343333344677899999 888888777754
No 200
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.11 E-value=3.8e-06 Score=78.16 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=66.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHccc-
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGV- 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gv- 410 (534)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+... ..+.|+||||..... ......+.++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~~~~~~~~d 82 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR----TITTAYYRGAM 82 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH----HHHHTTGGGCS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc----chHHHhhcCCC
Confidence 3589999999999999999999986542 223334544433333333 368999999974221 1111112211
Q ss_pred --cccccCCCch--hhHHHH---HHh---hccceeeehcCCCCCCC---HHHHHHHHHHHhCC
Q psy6781 411 --VRVENIDDPV--QYIDAV---LER---IKKVHLVKTYGIDEWED---TEDFLKKLAFKWGK 460 (534)
Q Consensus 411 --v~v~~i~~~~--~~i~~i---L~r---~~k~~l~~~ykId~~~d---~~efLe~la~k~g~ 460 (534)
+-+-.+.++. +.+..+ +.. ...+.+.+.+|+|.... ..+.+..++...|.
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF 145 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC
Confidence 1111122222 112222 222 14567888899997532 23445666776653
No 201
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.11 E-value=2.8e-06 Score=77.17 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=40.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeC---ccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|++.......+..|.+.. ..+..+ -.+.++||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEE-EEEEETTEEEEEEEEECSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEE-EEEEECCEEEEEEEEECCCCch
Confidence 468999999999999999999998665444444443322 222333 2578899999653
No 202
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.1e-06 Score=97.80 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=42.3
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCC------------------------------CCCceeeeEEE---EeC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAP------------------------------VPGETKVWQYI---TLM 381 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~------------------------------~pgtTk~~~~~---~~~ 381 (534)
+..++|+++|.+|+|||||+|+|++........ .+|+|.+..+. ...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 467999999999999999999999753221110 26777653222 224
Q ss_pred ccEEEEeCCCcc
Q psy6781 382 RRIYLIDCPGVV 393 (534)
Q Consensus 382 ~~i~liDtPGi~ 393 (534)
..+.|+||||..
T Consensus 245 ~~~~iiDTPG~e 256 (611)
T 3izq_1 245 ANFTIVDAPGHR 256 (611)
T ss_dssp CEEEEEECCSSS
T ss_pred ceEEEEECCCCc
Confidence 589999999973
No 203
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.11 E-value=8.4e-06 Score=75.43 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=62.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGV 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gv 410 (534)
..++|+++|.+|||||||+|+|++... ....+.++... ..+..+ -.+.|+||||..... . ....+.++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~---~~~~~~~~ 92 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR--N---CERYLNWA 92 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC--C---THHHHTTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch--h---HHHHHhhC
Confidence 578999999999999999999997652 12333333321 112222 257899999975433 1 12333332
Q ss_pred ---cccccCCCch------hhHHHHHHh-----hccceeeehcCCCCCCC---HHHHHHHHHHHhC
Q psy6781 411 ---VRVENIDDPV------QYIDAVLER-----IKKVHLVKTYGIDEWED---TEDFLKKLAFKWG 459 (534)
Q Consensus 411 ---v~v~~i~~~~------~~i~~iL~r-----~~k~~l~~~ykId~~~d---~~efLe~la~k~g 459 (534)
+-+-.+.++. .++..+... ...+.+.+.+|+|.... ..+-...+++..|
T Consensus 93 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 158 (187)
T 3c5c_A 93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG 158 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC
Confidence 1122223332 122233333 24567888899986421 1233445555555
No 204
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=2.9e-06 Score=77.87 Aligned_cols=143 Identities=17% Similarity=0.114 Sum_probs=76.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHcccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGVV 411 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gvv 411 (534)
..++|+++|.+|||||||||+|++.... ...+..|.+.....+... ..+.|+||||..... ......+..+.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~d 89 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR----TLTPSYYRGAQ 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC----CSHHHHHTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh----hhhHHHhccCC
Confidence 4689999999999999999999976532 223344444443344443 358899999965332 12233333221
Q ss_pred c---cccCCCch--hhH----HHHHHh---hccceeeehcCCCCCCC--HHHHHHHHHHHhCCcc----ccCcchHHHHH
Q psy6781 412 R---VENIDDPV--QYI----DAVLER---IKKVHLVKTYGIDEWED--TEDFLKKLAFKWGKIK----KKGEPVITASA 473 (534)
Q Consensus 412 ~---v~~i~~~~--~~i----~~iL~r---~~k~~l~~~ykId~~~d--~~efLe~la~k~g~l~----kgG~pD~~~aA 473 (534)
. +-.+.++. +.+ ..+... ...+.+.+.+|+|.... ..+....++...+... ....-.+..+-
T Consensus 90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 1 11122221 112 222221 13456778899986421 1233445566555311 11123555556
Q ss_pred HHHHHHHHc
Q psy6781 474 KMVLNDWQR 482 (534)
Q Consensus 474 ~~vL~d~~~ 482 (534)
..+++.+..
T Consensus 170 ~~l~~~~~~ 178 (195)
T 1x3s_A 170 EELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 666666554
No 205
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=4.6e-06 Score=77.02 Aligned_cols=108 Identities=18% Similarity=0.092 Sum_probs=66.3
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.|+||...... + ....+.++|++|+|+|+.++...... .+...+....++.|+|+|+||+
T Consensus 67 ~~~i~D~~G~~~~~~--~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 132 (194)
T 2atx_A 67 LLGLYDTAGQEDYDR--L------------RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 132 (194)
T ss_dssp EEEEECCCCSSSSTT--T------------GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECT
T ss_pred EEEEEECCCCcchhH--H------------HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 455789999643221 1 11245689999999999876433211 1222333334589999999999
Q ss_pred CCCChhhH-------------HHHHHHHhccCCe-EEeeeccCCCCChHHHHHHHHHH
Q psy6781 285 DLVPIWVT-------------QRWVAILSKEYPT-IAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 285 DLv~~~~~-------------~~wl~~l~~~~p~-v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
||.+.... ......+.+.+.. ..|.+|++++.|+++|++.|.+.
T Consensus 133 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 133 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp TSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 99764211 1111112111121 45778999999999999888654
No 206
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.10 E-value=3.6e-06 Score=76.11 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=65.6
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhh---CCCCc-EE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRRE---KPHKH-LF 278 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~---~~~k~-~I 278 (534)
....+.|+||...... + ....+.++|++|+|+|+.++.... .+..+ +... ..+.| ++
T Consensus 56 ~~~~~~Dt~G~~~~~~-----------~---~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~ii 119 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGK-----------M---LDKYIYGAQGVLLVYDITNYQSFE--NLEDWYTVVKKVSEESETQPLVA 119 (178)
T ss_dssp EEEEEEECTTCCTTCT-----------T---HHHHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHHHHTCCCEEE
T ss_pred EEEEEEECCCCccccc-----------h---hhHHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhcccCCCCeEE
Confidence 3456789999543211 1 123467999999999998765432 12222 2211 12456 78
Q ss_pred EEEeCCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 279 FILNKVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 279 lVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+|+||+||.+.. ........+.+.+....+.+|++++.|+++|++.|.+.+
T Consensus 120 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 120 LVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp EEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999996531 111122222222233467789999999999999887654
No 207
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.09 E-value=3.6e-06 Score=78.14 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=37.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++..... ..+..|.+.....+..+. .+.|+||||..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 56899999999999999999999865432 222333333333333433 68999999964
No 208
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.09 E-value=3.1e-06 Score=87.52 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=67.3
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
.....++.||||+... ...++..+|++|+|+|+...... .. ++.....+|.|+|+||
T Consensus 170 ~~~~~iiiDTpGi~~~-----------------~~~~~~~aD~vl~V~d~~~~~~~--~~----l~~~~~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS-----------------EVAVANMVDTFVLLTLARTGDQL--QG----IKKGVLELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH-----------------HHHHHTTCSEEEEEEESSTTCTT--TT----CCTTSGGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH-----------------HHHHHHhCCEEEEEECCCCCccH--HH----HHHhHhhcCCEEEEEC
Confidence 3456789999997532 12345899999999997643211 11 1111123688999999
Q ss_pred CCCCChhhHHHHHHHHhcc----------CCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 284 VDLVPIWVTQRWVAILSKE----------YPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~~----------~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+|+.+........+.+... +...++.+|+.++.|+++|.+.|.++++
T Consensus 227 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 227 ADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 9998654433333333221 1233677899999999999999987654
No 209
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.09 E-value=7.4e-06 Score=76.49 Aligned_cols=108 Identities=15% Similarity=0.055 Sum_probs=68.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLN 282 (534)
...+.|+||....... ....+.++|++|+|+|+.++... ..+..++ .. ...+.|+|+|+|
T Consensus 58 ~~~l~Dt~G~~~~~~~--------------~~~~~~~~d~vilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~n 121 (206)
T 2bcg_Y 58 KLQIWDTAGQERFRTI--------------TSSYYRGSHGIIIVYDVTDQESF--NGVKMWLQEIDRYATSTVLKLLVGN 121 (206)
T ss_dssp EEEEECCTTTTTTTCC--------------CGGGGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCChHHHHHH--------------HHHhccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 4567899995432211 11245689999999999876432 2233332 22 235789999999
Q ss_pred CCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+.. ........+...+....|.+|+.++.|+++|++.|.+.+.
T Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99997632 1112222232223334677899999999999988876554
No 210
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.09 E-value=1.8e-05 Score=72.47 Aligned_cols=121 Identities=15% Similarity=0.189 Sum_probs=63.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCC-------CCCceeeeEEE-----EeC---ccEEEEeCCCcccCCCCCc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAP-------VPGETKVWQYI-----TLM---RRIYLIDCPGVVYDMTNVE 400 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~-------~pgtTk~~~~~-----~~~---~~i~liDtPGi~~p~~~~~ 400 (534)
..++|+++|.+|||||||+|.|.+.......+ ....|....+. ..+ ..+.|+||||...-.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 46899999999999999999998764322111 01122222211 111 258899999964322
Q ss_pred chHHHHHcccccc---ccCCCc-----h---hhHHHHHHhh-----ccceeeehcCCCCCCC-HHHHHHHHHHHhCC
Q psy6781 401 TDTEKVLRGVVRV---ENIDDP-----V---QYIDAVLERI-----KKVHLVKTYGIDEWED-TEDFLKKLAFKWGK 460 (534)
Q Consensus 401 ~~~e~vL~gvv~v---~~i~~~-----~---~~i~~iL~r~-----~k~~l~~~ykId~~~d-~~efLe~la~k~g~ 460 (534)
......+.++..+ -.+.++ . +.+...+..+ ..+.+.+.||+|.... ..+-+..++...|.
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCC
Confidence 1223333322111 111111 1 1222333332 4577888999996542 22334455555554
No 211
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.09 E-value=4.2e-06 Score=76.89 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=37.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++.... ...++++... ..+.... .+.|+||||..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 4689999999999999999999976532 2333444322 1222332 48899999964
No 212
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.09 E-value=4.7e-06 Score=75.07 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=40.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|++.... ....|.++.+. ..+.++. .+.|+||||...
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence 3589999999999999999999965432 23344444332 2233333 689999999643
No 213
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.09 E-value=5.8e-07 Score=89.69 Aligned_cols=119 Identities=13% Similarity=0.051 Sum_probs=71.3
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||......... ...+...++ ..+.....+|++|+|+|+.++ .+...+...+.. .++|+|+|+||+
T Consensus 49 ~~~~~liDtpG~~~~~~~~~-~~~~~e~i~-~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~--~~~p~ivv~NK~ 122 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISS-QTSLDEQIA-CHYILSGDADLLINVVDASNL--ERNLYLTLQLLE--LGIPCIVALNML 122 (274)
T ss_dssp SCEEEEEECCCCSCSCC-----CCHHHHHH-HHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHH--HTCCEEEEEECH
T ss_pred CCceEEEECcCCCccccccc-cCCHHHHHH-HHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHh--cCCCEEEEEECc
Confidence 34566899999765331000 001222333 334456899999999999863 222333344443 379999999999
Q ss_pred CCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 285 DLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+.+........+.+.+.+...++.+|+.++.|+++|++.|.+.+
T Consensus 123 Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 123 DIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred cchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 997543211111222222223467789999999999988887543
No 214
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.09 E-value=5.2e-06 Score=74.68 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=63.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh--hCCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR--EKPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~--~~~~k~~IlVL 281 (534)
...+.|+||.......+ .....+..+|.+++|+|+.++.+.. .+..+ +.. ...++|+|+|+
T Consensus 53 ~~~~~D~~g~~~~~~~~------------~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~piilv~ 118 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSW------------SQESCLQGGSAYVIVYSIADRGSFE--SASELRIQLRRTHQADHVPIILVG 118 (175)
T ss_dssp EEEEECCC-------CH------------HHHHTTTSCSEEEEEEETTCHHHHH--HHHHHHHHHHHCC----CCEEEEE
T ss_pred EEEEEecCCCCccchhh------------hHHhhcccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhhccCCCCEEEEE
Confidence 45678999964211100 0123456899999999998764321 23333 222 12478999999
Q ss_pred eCCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||.+... .......+...+....|.+|++++.|+++|.+.|.+.+.
T Consensus 119 NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 119 NKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp ECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999975421 111122222222334678899999999999998876554
No 215
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.08 E-value=7.5e-06 Score=73.31 Aligned_cols=110 Identities=15% Similarity=0.042 Sum_probs=65.8
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|++|...... .++. ..+.++|++++|+|+.++.+... ..+..+... ...++|+++|+||
T Consensus 52 ~~~i~D~~g~~~~~~----------~~~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 52 TLIVYDIWEQGDAGG----------WLQD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp EEEEECCCCC------------------C---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEECCCccccch----------hhhh---hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence 456789999642111 1111 13557999999999987643221 122222221 1237999999999
Q ss_pred CCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 284 VDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 284 iDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+||.+.. ........+.+.+....+.+|++++.|++++++.|.+.+
T Consensus 119 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 9997432 222223333333444568889999999999988887644
No 216
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.08 E-value=7.2e-06 Score=73.21 Aligned_cols=107 Identities=14% Similarity=0.032 Sum_probs=61.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---h--hCCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---R--EKPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~--~~~~k~~IlVL 281 (534)
...+.|++|.... ..++ ...+.++|++++|+|+.++.+. ..+..++. . ...++|+++|+
T Consensus 50 ~~~i~D~~g~~~~-----------~~~~---~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~ 113 (166)
T 3q72_A 50 SLMVYDIWEQDGG-----------RWLP---GHCMAMGDAYVIVYSVTDKGSF--EKASELRVQLRRARQTDDVPIILVG 113 (166)
T ss_dssp EEEEEECC-----------------------------CCEEEEEEETTCHHHH--HHHHHHHHHHHHCC---CCCEEEEE
T ss_pred EEEEEECCCCccc-----------hhhh---hhhhhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4557799995321 1111 2345789999999999877432 22333322 1 13578999999
Q ss_pred eCCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 282 NKVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 282 NKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||+||.+.. ........+...+....|.+|++++.|+++|++.|.+.+
T Consensus 114 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 114 NKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp ECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred eccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 999997542 222223333333444567889999999999998887654
No 217
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.08 E-value=7.3e-06 Score=76.79 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=65.4
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLN 282 (534)
....+.||||...... +| ...+.++|++|+|+|+.++..... ..+..++.. ...++|+|+|+|
T Consensus 69 ~~l~i~Dt~G~~~~~~-----------~~---~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 134 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARR-----------VW---KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 134 (198)
T ss_dssp EEEEEEEECC----CC-----------GG---GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEE
T ss_pred EEEEEEECCCcHhhHH-----------HH---HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEE
Confidence 3556789999533211 11 124568999999999987643211 122222221 225799999999
Q ss_pred CCCCCCh---hhHHHHHHHHh-----------c--cCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 283 KVDLVPI---WVTQRWVAILS-----------K--EYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 283 KiDLv~~---~~~~~wl~~l~-----------~--~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|+||... +....++.... . ......|.+||+++.|++++.+.|.+
T Consensus 135 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 135 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999752 33333333211 0 12345788999999999999988864
No 218
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.08 E-value=6.7e-06 Score=76.43 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=67.6
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLN 282 (534)
....+.||||...... ++ ...+.++|++|+|+|+.++..... ..+..++.. ...+.|+++|+|
T Consensus 67 ~~~~i~Dt~G~~~~~~-----------~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 132 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARR-----------LW---KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 132 (190)
T ss_dssp EEEEEEECCCSGGGTT-----------SG---GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred EEEEEEECCCCHHHHH-----------HH---HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEE
Confidence 3456789999643211 11 123568999999999997743221 112222221 235799999999
Q ss_pred CCCCCChhhHHHHHHHHhc-----------cCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 283 KVDLVPIWVTQRWVAILSK-----------EYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 283 KiDLv~~~~~~~wl~~l~~-----------~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|+||..........+.+.. ......|.+|++++.|++++.+.|.+
T Consensus 133 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 133 KIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 9999753222333333322 12345788999999999999888763
No 219
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.08 E-value=4.3e-06 Score=77.56 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=74.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHcc-
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRG- 409 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~g- 409 (534)
..++|+|+|.+|||||||+|+|.+... ....++++... ..+..+. .+.|+||||..... ......+..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~~~~~~~~ 86 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----AIRDNYFRSG 86 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----HHHHHHHHHC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH----HHHHHHHhhC
Confidence 568999999999999999999997653 23334444332 1223333 68899999964321 112222222
Q ss_pred --ccccccCCCch------hhHHHHHHhh---ccceeeehcCCCCCCC---HHHHHHHHHHHhCCc--c---ccCcchHH
Q psy6781 410 --VVRVENIDDPV------QYIDAVLERI---KKVHLVKTYGIDEWED---TEDFLKKLAFKWGKI--K---KKGEPVIT 470 (534)
Q Consensus 410 --vv~v~~i~~~~------~~i~~iL~r~---~k~~l~~~ykId~~~d---~~efLe~la~k~g~l--~---kgG~pD~~ 470 (534)
++-+-.+.++. .++..++... ..+.+.+.+|+|.... ..+-+..++...|.- . +.| -+++
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g-~gi~ 165 (206)
T 2bov_A 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTR-ANVD 165 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTC-TTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCC-CCHH
Confidence 22222222322 2222333332 4567888999996431 123344555555531 0 112 2455
Q ss_pred HHHHHHHHHHH
Q psy6781 471 ASAKMVLNDWQ 481 (534)
Q Consensus 471 ~aA~~vL~d~~ 481 (534)
.+-..+++.+.
T Consensus 166 ~l~~~l~~~i~ 176 (206)
T 2bov_A 166 KVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 220
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.08 E-value=3.1e-06 Score=78.96 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=65.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~-~~~~k~~IlVLN 282 (534)
...+.|+||.... . ......+.++|++|+|+|+.++..... +..+ +.. ...+.|+|+|+|
T Consensus 78 ~l~i~Dt~G~~~~-----------~---~~~~~~~~~~d~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~N 141 (199)
T 2p5s_A 78 VLQLWDTAGQERF-----------R---SIAKSYFRKADGVLLLYDVTCEKSFLN--IREWVDMIEDAAHETVPIMLVGN 141 (199)
T ss_dssp EEEEEECTTCTTC-----------H---HHHHHHHHHCSEEEEEEETTCHHHHHT--HHHHHHHHHHHC---CCEEEEEE
T ss_pred EEEEEECCCCcch-----------h---hhHHHHHhhCCEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCCEEEEEE
Confidence 4567899995321 1 122345678999999999987644322 2222 222 224789999999
Q ss_pred CCCCCCh-------hhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 283 KVDLVPI-------WVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 283 KiDLv~~-------~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+||.+. .........+...+....|.+|++++.|++++++.|.+.+
T Consensus 142 K~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp CGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9999632 1112222233222234567789999999999988887543
No 221
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.08 E-value=2.7e-06 Score=77.61 Aligned_cols=105 Identities=13% Similarity=0.055 Sum_probs=59.4
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---h-hCCCCcEEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---R-EKPHKHLFFIL 281 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~-~~~~k~~IlVL 281 (534)
....+.|+||...... .....+.++|++|+|+|+.++... ..+..++. . ...+.|+|+|+
T Consensus 57 ~~~~l~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~ 120 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRT--------------ITTAYYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILG 120 (183)
T ss_dssp EEEEEEEC-----------------------CCTTTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEEcCCCChhhhh--------------hHHHHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEE
Confidence 3456789999532111 112346789999999999876432 23333332 2 23578999999
Q ss_pred eCCCCCCh-----hhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPI-----WVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~-----~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||.+. .....|.+. +....|.+|++++.|++.|++.|.+.+.
T Consensus 121 nK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 121 NKCDVNDKRQVSKERGEKLALD----YGIKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp EC--CCSCCCSCHHHHHHHHHH----HTCEEEECCC---CCHHHHHHHHHHHHH
T ss_pred ECccCCccCcCCHHHHHHHHHH----cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999753 222333322 2335678899999999999988876543
No 222
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.08 E-value=1.5e-05 Score=74.69 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=38.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|.+... ....+.++... ..+..+. .+.|+||||...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHH
Confidence 468999999999999999999997543 12222332221 1222332 689999999753
No 223
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.07 E-value=9.9e-06 Score=85.27 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=65.0
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHH--HHHhhCCCCcEEEEEeC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIEN--FLRREKPHKHLFFILNK 283 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~--~L~~~~~~k~~IlVLNK 283 (534)
....+.||||.. .+...+...+..+|++|+|+||.++.... ...+. .+. ....+|+|+|+||
T Consensus 81 ~~i~iiDtPGh~--------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~-qt~e~l~~~~-~l~~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGHE--------------TLMATMLSGASLMDGAILVIAANEPCPQP-QTKEHLMALE-ILGIDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSHH--------------HHHHHHHTTCSCCSEEEEEEETTSCSSCH-HHHHHHHHHH-HTTCCCEEEEEEC
T ss_pred cEEEEEECCCHH--------------HHHHHHHHhHhhCCEEEEEEECCCCCCCc-hhHHHHHHHH-HcCCCeEEEEEEc
Confidence 356788999931 22334555677889999999999874221 11121 222 1223579999999
Q ss_pred CCCCChhh----HHHHHHHHhcc--CCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 284 VDLVPIWV----TQRWVAILSKE--YPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 284 iDLv~~~~----~~~wl~~l~~~--~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
+||.+... .....+++... ....+|.+|+.++.|++.|++.|.+.++.
T Consensus 145 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 145 IDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 99987532 23333444321 12346788999999999999999886653
No 224
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.07 E-value=9.5e-06 Score=88.69 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=50.5
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||..+.. .+....+..+|.+|+|+|+..+.......+.+.+.. .++|+|+|+||+
T Consensus 81 ~~~i~liDTPG~~df~--------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~ 144 (528)
T 3tr5_A 81 DYLINLLDTPGHADFT--------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKM 144 (528)
T ss_dssp TEEEEEECCCCSTTCC--------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECT
T ss_pred CEEEEEEECCCchhHH--------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence 4456789999964321 235567889999999999998766554444444443 579999999999
Q ss_pred CCCCh
Q psy6781 285 DLVPI 289 (534)
Q Consensus 285 DLv~~ 289 (534)
|+...
T Consensus 145 Dl~~~ 149 (528)
T 3tr5_A 145 DRDTR 149 (528)
T ss_dssp TSCCS
T ss_pred CCccc
Confidence 99743
No 225
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.07 E-value=7.3e-06 Score=76.62 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=67.1
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.|+||...... ++ ...+.++|++|+|+|+.++.+... ..+...+....++.|+++|+||+
T Consensus 74 ~l~i~Dt~G~~~~~~-----------~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 139 (201)
T 2gco_A 74 ELALWDTAGQEDYDR-----------LR---PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 139 (201)
T ss_dssp EEEEECCCCSGGGTT-----------TG---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECG
T ss_pred EEEEEECCCchhHHH-----------HH---HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecH
Confidence 456789999532111 01 124678999999999987643321 11223333334589999999999
Q ss_pred CCCChhhHHHHH-------------HHHhccCCe-EEeeeccCCCCChHHHHHHHHHH
Q psy6781 285 DLVPIWVTQRWV-------------AILSKEYPT-IAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 285 DLv~~~~~~~wl-------------~~l~~~~p~-v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
||.+.......+ ..+...+.. ..|.+|++++.|+++|++.|.+.
T Consensus 140 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp GGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 998653222111 111122222 46788999999999999888754
No 226
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.07 E-value=5.4e-06 Score=76.68 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=74.3
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHcc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRG 409 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~g 409 (534)
...++|+++|.+|||||||+|+|++... ......++... ..+.... .+.|+||||...-.. .....+.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~~~~~ 94 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR----LRPLSYAD 94 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT----TGGGGCTT
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH----HhHhhccC
Confidence 3579999999999999999999998653 12222222211 1122222 468999999643220 11111111
Q ss_pred ---ccccccCCCch------hhHHHHHHhh--ccceeeehcCCCCCC-----CHHHHHHHHHHHhCCc--c---ccCcch
Q psy6781 410 ---VVRVENIDDPV------QYIDAVLERI--KKVHLVKTYGIDEWE-----DTEDFLKKLAFKWGKI--K---KKGEPV 468 (534)
Q Consensus 410 ---vv~v~~i~~~~------~~i~~iL~r~--~k~~l~~~ykId~~~-----d~~efLe~la~k~g~l--~---kgG~pD 468 (534)
++-+-.+.++. ......+... ..+.+.+.+|+|... -..+....+++..|.. . ....-+
T Consensus 95 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 11111122222 1222233333 356788889998643 1234456677776643 1 111234
Q ss_pred HHHHHHHHHHHHHc
Q psy6781 469 ITASAKMVLNDWQR 482 (534)
Q Consensus 469 ~~~aA~~vL~d~~~ 482 (534)
+..+-..+++.+..
T Consensus 175 i~~l~~~l~~~i~~ 188 (194)
T 3reg_A 175 LNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 56666666665544
No 227
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.07 E-value=6.4e-06 Score=77.11 Aligned_cols=142 Identities=11% Similarity=-0.015 Sum_probs=73.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHcc-
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRG- 409 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~g- 409 (534)
..++|+++|.+|||||||+|+|++... .....|++|.+. ..+.++. .+.++||||..... .......+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---~~~~~~~~~~~ 97 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---GWLRDHCLQTG 97 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---HHHHHHHHHHC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---hhhHHHhhccC
Confidence 568999999999999999999986432 123345444332 1223332 56788999974321 0011222222
Q ss_pred --ccccccCCCch------hhHHHHHHhh---ccceeeehcCCCCCCC---HHHHHHHHHHHhCCcc----ccCcchHHH
Q psy6781 410 --VVRVENIDDPV------QYIDAVLERI---KKVHLVKTYGIDEWED---TEDFLKKLAFKWGKIK----KKGEPVITA 471 (534)
Q Consensus 410 --vv~v~~i~~~~------~~i~~iL~r~---~k~~l~~~ykId~~~d---~~efLe~la~k~g~l~----kgG~pD~~~ 471 (534)
++=+-.+.++. .++..+.... ..+.+.+.+|+|.... ..+-...+|...+... ......+..
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 22122223322 2222333222 4567788899987532 1223445666554210 111235555
Q ss_pred HHHHHHHHHH
Q psy6781 472 SAKMVLNDWQ 481 (534)
Q Consensus 472 aA~~vL~d~~ 481 (534)
+-..+++.+.
T Consensus 178 lf~~l~~~i~ 187 (195)
T 3cbq_A 178 LFEGAVRQIR 187 (195)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 228
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.07 E-value=3.8e-06 Score=78.12 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=40.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|.+.... ....|.++.+. ..+..+. .+.|+||||...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 5789999999999999999999976532 22233333332 2233332 689999999653
No 229
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.07 E-value=2.9e-06 Score=76.85 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=65.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||.......+ ..+.+.... -...++|++++|+|+..+. ....+...+.. .++|+|+|.||+||
T Consensus 51 ~l~i~Dt~G~~~~~~~~-----~~~~~~~~~-~~~~~~~~~i~v~D~~~~~--~~~~~~~~~~~--~~~p~ilv~nK~Dl 120 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANS-----IDEIIARDY-IINEKPDLVVNIVDATALE--RNLYLTLQLME--MGANLLLALNKMDL 120 (165)
T ss_dssp EEEEEECCCCSCSSSSS-----HHHHHHHHH-HHHHCCSEEEEEEETTCHH--HHHHHHHHHHH--TTCCEEEEEECHHH
T ss_pred EEEEEECCCcccCCCcc-----hhHHHHHHH-HhcCCCCEEEEEecCCchh--HhHHHHHHHHh--cCCCEEEEEEchHh
Confidence 45678999975432211 112222222 2235899999999997531 11112122222 47999999999998
Q ss_pred CChh----hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 287 VPIW----VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 287 v~~~----~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
.... ....|.+.+ ....+.+||+++.|+++|.+.|.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~----~~~~~~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 121 AKSLGIEIDVDKLEKIL----GVKVVPLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp HHHTTCCCCHHHHHHHH----TSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHHHh----CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5432 123343333 2335778999999999999888654
No 230
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.07 E-value=3.9e-06 Score=83.09 Aligned_cols=115 Identities=12% Similarity=0.039 Sum_probs=69.3
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.|+||.......+ ....+.+... ....+|+||+|+|+.++. +...+...+. ..++|+|+|+||+|
T Consensus 52 ~~~~l~DtpG~~~~~~~~-----~~e~v~~~~~-~~~~~d~ii~V~D~t~~~--~~~~~~~~l~--~~~~pvilv~NK~D 121 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSS-----IDEKIARDYL-LKGDADLVILVADSVNPE--QSLYLLLEIL--EMEKKVILAMTAID 121 (258)
T ss_dssp EEEEEEECCCCSSCCSSS-----HHHHHHHHHH-HHSCCSEEEEEEETTSCH--HHHHHHHHHH--TTTCCEEEEEECHH
T ss_pred eEEEEEECCCcCccCCCC-----HHHHHHHHHH-hhcCCCEEEEEeCCCchh--hHHHHHHHHH--hcCCCEEEEEECcC
Confidence 456789999975433211 1112222221 226899999999998642 2222223333 25799999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+..........+.+.+.+...+|.+|++++.|+++|++.|.+.+.
T Consensus 122 l~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 122 EAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 965322111122232222234677899999999999998876543
No 231
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.07 E-value=4e-06 Score=78.02 Aligned_cols=108 Identities=11% Similarity=0.083 Sum_probs=68.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLN 282 (534)
...+.|+||... + . ......+.++|++|+|+|+.++... ..+..++ .. ...+.|+|+|+|
T Consensus 58 ~~~l~Dt~G~~~-----~------~---~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~n 121 (203)
T 1zbd_A 58 KLQIWDTAGLER-----Y------R---TITTAYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVLLVGN 121 (203)
T ss_dssp EEEEEEECCSGG-----G------H---HHHHTTGGGCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred EEEEEECCCchh-----h------c---chHHHhhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 456789999531 1 1 1123457799999999999876432 2233333 22 125789999999
Q ss_pred CCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+.. ........+.+.+....|.+|++++.|+++|++.|.+.+.
T Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp CTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred CcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99997632 1112222222222335678899999999999888876543
No 232
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.07 E-value=4.1e-06 Score=78.81 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=67.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.||||...... .....+.++|++|+|+|+.++...... .+...+.....++|+|+|+||+
T Consensus 79 ~l~i~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 144 (204)
T 4gzl_A 79 NLGLWDTAGLEDYDR--------------LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144 (204)
T ss_dssp EEEEEEECCSGGGTT--------------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECH
T ss_pred EEEEEECCCchhhHH--------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEech
Confidence 344789999642211 011245689999999999876543221 1223344344689999999999
Q ss_pred CCCChhhHHHH-------------HHHHhccCC-eEEeeeccCCCCChHHHHHHHHH
Q psy6781 285 DLVPIWVTQRW-------------VAILSKEYP-TIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 285 DLv~~~~~~~w-------------l~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
||.+....... ...+.+.+. ...|.+||+++.|+++|++.|.+
T Consensus 145 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 99765322111 112222222 23678899999999999988865
No 233
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.07 E-value=3.3e-06 Score=74.87 Aligned_cols=109 Identities=12% Similarity=0.060 Sum_probs=66.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLNK 283 (534)
...+.|+||.... ..++ ...+.++|.+++|+|+.++..... ..+..++.. ...+.|+++|+||
T Consensus 52 ~~~l~D~~G~~~~-----------~~~~---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1kao_A 52 VLEILDTAGTEQF-----------ASMR---DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117 (167)
T ss_dssp EEEEEECCCTTCC-----------HHHH---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEEEEECCCchhh-----------HHHH---HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 3567899995321 1122 234678999999999987643211 111222221 2357999999999
Q ss_pred CCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 284 VDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 284 iDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+||.+... .......+...+....|.+|++++.|+++|++.|.+.+
T Consensus 118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 118 VDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp GGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred CcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 99975321 11222222222223467789999999999998887543
No 234
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.06 E-value=7.6e-06 Score=73.89 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=63.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhh----CCCCcEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRRE----KPHKHLFFI 280 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~----~~~k~~IlV 280 (534)
...+.|+||..... ......+.++|++|+|+|+.++..... ..+..+.... ..+.|+++|
T Consensus 59 ~~~l~Dt~G~~~~~--------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 124 (182)
T 1ky3_A 59 TMQVWDTAGQERFQ--------------SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124 (182)
T ss_dssp EEEEECCC------------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEE
T ss_pred EEEEEECCCChHhh--------------hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEE
Confidence 45678999942111 112235678999999999987643221 1111222111 157899999
Q ss_pred EeCCCCCChh--hHHHHHHHHhc-cCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 281 LNKVDLVPIW--VTQRWVAILSK-EYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 281 LNKiDLv~~~--~~~~wl~~l~~-~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+||+||.+.. ........+.. ......|.+|++++.|+++|++.|.+.+
T Consensus 125 ~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 125 GNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999996432 11122222322 2334467789999999999998887643
No 235
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.06 E-value=2.9e-06 Score=76.73 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=36.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeC----ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLM----RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~----~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++.... ...+..|.+.....+..+ ..+.|+||||..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 5789999999999999999999976532 112222222222233333 268999999954
No 236
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.05 E-value=3.1e-06 Score=79.52 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=68.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.|+||...... + + ...+.++|++|+|+|+.++...... .+...+....++.|+|||+||+
T Consensus 58 ~~~i~Dt~G~~~~~~--~---------~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 123 (212)
T 2j0v_A 58 NLGLWDTAGQEDYSR--L---------R---PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123 (212)
T ss_dssp EEEEECCCCCCCCCC----------------CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECH
T ss_pred EEEEEECCCcHHHHH--H---------H---HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCH
Confidence 456789999643221 1 1 1246789999999999876443211 1222333334589999999999
Q ss_pred CCCChhh---------HHHHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 285 DLVPIWV---------TQRWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 285 DLv~~~~---------~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||.+... .......+...+. ...|.+|++++.|+++|++.|.+.+.
T Consensus 124 Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 124 DLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp HHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 9975432 1222222322222 24678899999999999998876554
No 237
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.05 E-value=2e-05 Score=81.40 Aligned_cols=118 Identities=13% Similarity=0.141 Sum_probs=72.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhhCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRREKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~~~~k~~IlVLNK 283 (534)
...+.||||+.....+.. .. ... ..+......+|.+|+|+|+..+.+.......++ +.....++|+|+|+||
T Consensus 215 ~~~l~Dt~G~~~~~~~~~-~~-~~~---~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 215 RYQIIDTPGLLDRPISER-NE-IEK---QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp EEEEEECTTTSSSCSTTS-CH-HHH---HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred eEEEEeCCCccccchhhh-hH-HHH---HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 456789999865322111 11 111 112223346999999999886643211222222 3322237999999999
Q ss_pred CCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 284 VDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+|+.+........+.+... ...++.+||.++.|+++|.+.|.+.+.
T Consensus 290 ~Dl~~~~~~~~~~~~~~~~-~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 290 IDVADEENIKRLEKFVKEK-GLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTCCHHHHHHHHHHHHHT-TCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHhc-CCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 9998865544444443322 223567899999999999998877654
No 238
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.05 E-value=4.2e-06 Score=76.34 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=39.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++.... ....|.++... ..+..+. .+.|+||||..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4689999999999999999999976532 22334433332 2333333 68899999964
No 239
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.05 E-value=6.4e-06 Score=84.40 Aligned_cols=110 Identities=16% Similarity=0.061 Sum_probs=69.8
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLN 282 (534)
....+.||||...... .....+..+|++|+|+|+.++.+... ..+..++.. ...++|+|||+|
T Consensus 209 ~~l~i~Dt~G~~~~~~--------------~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~N 274 (329)
T 3o47_A 209 ISFTVWDVGGQDKIRP--------------LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 274 (329)
T ss_dssp EEEEEEECC-----CC--------------SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEECCCCHhHHH--------------HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEE
Confidence 3456789999422111 12335678999999999987654321 122222321 224789999999
Q ss_pred CCCCCChhhHHHHHHHHhcc----CCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 283 KVDLVPIWVTQRWVAILSKE----YPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 283 KiDLv~~~~~~~wl~~l~~~----~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+||.+......+...+... ....+|.+|++++.|+++|++.|.+.+
T Consensus 275 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 275 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp CTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 99998754444455544332 234577889999999999999887654
No 240
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.05 E-value=2.3e-05 Score=72.91 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=68.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh---hCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR---EKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~---~~~~k~~IlVLN 282 (534)
-...+.|++|...... + .|. ....+.++|++|+|+|+.++.......+..++.. ..++.|+|+|.|
T Consensus 69 ~~l~i~Dt~G~~~~~~--~--------~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~n 137 (196)
T 3llu_A 69 VNFQIWDFPGQMDFFD--P--------TFD-YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIH 137 (196)
T ss_dssp CCEEEEECCSSCCTTC--T--------TCC-HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred eEEEEEECCCCHHHHh--h--------hhh-cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 3456789999543111 0 010 0234568999999999998732222344444443 346899999999
Q ss_pred CCCCCChhhH--------HHHHHHHhc----cCCeEEeeeccCCCCChHHHHHHHHH
Q psy6781 283 KVDLVPIWVT--------QRWVAILSK----EYPTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 283 KiDLv~~~~~--------~~wl~~l~~----~~p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
|+||.+.... ....+.+.+ ......|.+||++ .|++++.+.|.+
T Consensus 138 K~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHH
T ss_pred ccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHH
Confidence 9999874311 111223333 3445677889999 999998877754
No 241
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.04 E-value=1.6e-06 Score=89.87 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=72.9
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCC-cHH---HHHHHHhh---CCCCcEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTR-CAH---IENFLRRE---KPHKHLF 278 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~-~~~---le~~L~~~---~~~k~~I 278 (534)
....+.|+||+.....+ .+.+..+..+.++.+|++|+|+|+.++.... ... +...|... ..++|.|
T Consensus 206 ~~~~l~DtPG~i~~a~~-------~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i 278 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQ-------GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 278 (342)
T ss_dssp CEEEEEEHHHHHHHTTC-------TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC
T ss_pred ceEEEecCCCCcccccc-------cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE
Confidence 45678899996431111 1112334455678899999999996532111 012 22233321 2479999
Q ss_pred EEEeCCCCCChh-hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 279 FILNKVDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 279 lVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
+|+||+||.+.. ....+.+.+... ..+|.+|+.++.|+++|++.|.+.+..
T Consensus 279 lV~NK~Dl~~~~e~~~~l~~~l~~~--~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 279 IVANKMDMPEAAENLEAFKEKLTDD--YPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp BEEECTTSTTHHHHHHHHHHHCCSC--CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred EEEECccCCCCHHHHHHHHHHhhcC--CCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 999999998754 233444444322 235678999999999999999877653
No 242
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.04 E-value=3.9e-06 Score=77.56 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=59.7
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeCccEEEEeCCCcccCCCCCcchHHHHHccccc-
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVR- 412 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~- 412 (534)
+..++|+++|.+|||||||+|+|++.... ...+..|.+.. .+......+.|+||||..... ......+.++..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~~----~~~~~~~~~~d~i 94 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQPRFR----SMWERYCRGVSAI 94 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSHHHH----TTHHHHHTTCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCCEEEEEEECCCCHhHH----HHHHHHHccCCEE
Confidence 45799999999999999999999976542 22233333322 111224478999999964321 112233332211
Q ss_pred --cccCCCch------hhHHHHHHh---hccceeeehcCCCCCC
Q psy6781 413 --VENIDDPV------QYIDAVLER---IKKVHLVKTYGIDEWE 445 (534)
Q Consensus 413 --v~~i~~~~------~~i~~iL~r---~~k~~l~~~ykId~~~ 445 (534)
+-.+.++. .++..++.. ...+.+.+.+|+|...
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 11122221 223334332 3456788899999764
No 243
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.03 E-value=6.9e-06 Score=76.25 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=38.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeC-CCCCceeeeEEEEeC---ccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTA-PVPGETKVWQYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~-~~pgtTk~~~~~~~~---~~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|++....... +..+.+. ...+..+ ..+.|+||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence 5789999999999999999999986542221 1112111 1122333 2588999999765
No 244
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.03 E-value=4.7e-06 Score=78.32 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=39.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeC----ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM----RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~----~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++.... ...+.++.....+.++ ..+.|+||||..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 4689999999999999999999976532 2334444333334443 358999999975
No 245
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.03 E-value=6.4e-06 Score=77.08 Aligned_cols=107 Identities=13% Similarity=0.031 Sum_probs=67.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFIL 281 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVL 281 (534)
....+.|+||..... ......+.++|++|+|+|+.++.... .+..++ .. ...+.|+|+|+
T Consensus 74 ~~l~l~Dt~G~~~~~--------------~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~ 137 (200)
T 2o52_A 74 VKLQIWDTAGQERFR--------------SVTRSYYRGAAGALLVYDITSRETYN--SLAAWLTDARTLASPNIVVILCG 137 (200)
T ss_dssp EEEEEECCTTHHHHS--------------CCCHHHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHTCTTCEEEEEE
T ss_pred eEEEEEcCCCcHhHH--------------HHHHHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEE
Confidence 356678999942110 11234567999999999998764322 223332 21 23578999999
Q ss_pred eCCCCCChhh--HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 282 NKVDLVPIWV--TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 282 NKiDLv~~~~--~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||+||.+... .....+ +...+....|.+|++++.|+++|++.|.+.+
T Consensus 138 nK~Dl~~~~~v~~~~~~~-~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 138 NKKDLDPEREVTFLEASR-FAQENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp ECGGGGGGCCSCHHHHHH-HHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ECCCcccccccCHHHHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999964321 112222 2223344567789999999999998887644
No 246
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.03 E-value=7e-06 Score=75.70 Aligned_cols=141 Identities=14% Similarity=0.054 Sum_probs=71.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHcc--
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRG-- 409 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~g-- 409 (534)
..++|+++|.+|||||||+|+|.+..... ..+..+.+.. ..+..+ ..+.|+||||..... ......+.+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~----~~~~~~~~~~d 81 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFP----AMQRLSISKGH 81 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCH----HHHHHHHHHCS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhH----HHHHHhhccCC
Confidence 56899999999999999999999754321 1111122221 122222 268899999964321 112222222
Q ss_pred -ccccccCCCch------hhHHHHHHh----hccceeeehcCCCCCCC--HHHHHHHHHHHhCCcc----ccCcchHHHH
Q psy6781 410 -VVRVENIDDPV------QYIDAVLER----IKKVHLVKTYGIDEWED--TEDFLKKLAFKWGKIK----KKGEPVITAS 472 (534)
Q Consensus 410 -vv~v~~i~~~~------~~i~~iL~r----~~k~~l~~~ykId~~~d--~~efLe~la~k~g~l~----kgG~pD~~~a 472 (534)
++-+-.+.++. .++..+... ...+.+.+.+|+|.... ..+....++...+.-. ......+..+
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Confidence 11111222221 122222221 13467889999997531 2334455666655310 1112355555
Q ss_pred HHHHHHHHH
Q psy6781 473 AKMVLNDWQ 481 (534)
Q Consensus 473 A~~vL~d~~ 481 (534)
...+++.+.
T Consensus 162 ~~~l~~~~~ 170 (199)
T 2gf0_A 162 FQELLTLET 170 (199)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHHHh
Confidence 556555443
No 247
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.02 E-value=3e-06 Score=79.06 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=39.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+|+|.+|||||||+|+|++.... ....|++|.. ...+..+. .+.|+||||..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 4689999999999999999999986532 2222333332 22333333 58899999964
No 248
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.02 E-value=3.5e-06 Score=90.79 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=41.1
Q ss_pred cccceEEEEEecCCCchhHHHHhhhCCC------------------------------ceeeCCCCCceeeeEEEEe---
Q psy6781 334 ERKQISVGFIGYPNVGKSSIINALRNKK------------------------------VCKTAPVPGETKVWQYITL--- 380 (534)
Q Consensus 334 ~~~~~~v~vvG~pnvGKSSliN~L~~~~------------------------------~~~v~~~pgtTk~~~~~~~--- 380 (534)
.+..++|+++|.+|+|||||+|+|++.. .......+|+|.+.....+
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 3468999999999999999999997531 1122334677765433322
Q ss_pred CccEEEEeCCCcc
Q psy6781 381 MRRIYLIDCPGVV 393 (534)
Q Consensus 381 ~~~i~liDtPGi~ 393 (534)
...+.|+||||..
T Consensus 110 ~~~~~iiDTPG~~ 122 (483)
T 3p26_A 110 RANFTIVDAPGHR 122 (483)
T ss_dssp SCEEEEECCCCCG
T ss_pred CceEEEEECCCcH
Confidence 4579999999984
No 249
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.02 E-value=3.5e-06 Score=82.43 Aligned_cols=121 Identities=8% Similarity=-0.017 Sum_probs=74.1
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhh---CCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRRE---KPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~---~~~k~~IlVL 281 (534)
..+..+.||||+.+..... ....+.+.+.++..+..+|++|+|+|+.. +......+.+++... ..++|+|+|+
T Consensus 70 ~~~i~iiDTpG~~~~~~~~---~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv 145 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHC---EALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLF 145 (260)
T ss_dssp TEEEEEEECCGGGGSSCCC---HHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred CCEEEEEECcCCCCCCCCH---HHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEE
Confidence 3467889999986543210 01223445566667889999999999985 333333343444331 1146888888
Q ss_pred e-CCCCCChhhHHH------------HHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 N-KVDLVPIWVTQR------------WVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 N-KiDLv~~~~~~~------------wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
| |+||.+.. ... +++.+...+. ...+.+||+++.|++.|++.|...++
T Consensus 146 ~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 146 THKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp ECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHH
Confidence 8 99998542 222 3333332221 11156788888899999888876654
No 250
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.02 E-value=7.9e-06 Score=75.77 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=66.7
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH---HHhh--CCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF---LRRE--KPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~---L~~~--~~~k~~IlVL 281 (534)
...+.|+||.... ..++ ...+.++|.+|+|+|+.++.... .+..+ +... ..++|+|+|+
T Consensus 63 ~~~l~Dt~G~~~~-----------~~~~---~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~ 126 (206)
T 2bov_A 63 QIDILDTAGQEDY-----------AAIR---DNYFRSGEGFLCVFSITEMESFA--ATADFREQILRVKEDENVPFLLVG 126 (206)
T ss_dssp EEEEEECCCTTCC-----------HHHH---HHHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHTTCSCCCEEEEE
T ss_pred EEEEEcCCChhhh-----------HHHH---HHHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4568899995321 1112 23466899999999998764321 22222 2222 2479999999
Q ss_pred eCCCCCChhh--HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPIWV--TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~~~--~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||.+... .....+.. ..+....|.+|+.++.|+++|++.|.+.+.
T Consensus 127 nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 127 NKSDLEDKRQVSVEEAKNRA-EQWNVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp ECTTCGGGCCSCHHHHHHHH-HHHTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred eccCccccccccHHHHHHHH-HHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999975321 11222222 222234678899999999999988876543
No 251
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.02 E-value=1.1e-05 Score=79.95 Aligned_cols=120 Identities=15% Similarity=0.065 Sum_probs=71.7
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEE-EEEeCCCCCCCCcH-HHHHHHHhhCCCCcEEEEEeC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVV-YVLDVRDPMGTRCA-HIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL-~VvDAR~Pl~s~~~-~le~~L~~~~~~k~~IlVLNK 283 (534)
.+..+.||||+........ .......+...+...+.++|.+| +|+|+..++...+. .+.+.+. ..++|+|+|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~--~~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQ-PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD--PQGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSS-CTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC--TTCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCC-CchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC--CCCCeEEEEEEc
Confidence 4677899999865321000 00112233334455666777555 79999887665432 2333333 247899999999
Q ss_pred CCCCChhh-HHHHHHH-Hhc-cCC-eEEeeeccCCCCChHHHHHHHHHH
Q psy6781 284 VDLVPIWV-TQRWVAI-LSK-EYP-TIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 284 iDLv~~~~-~~~wl~~-l~~-~~p-~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
+||.+... ...+++. +.. ... ..++.+||+++.|++.|.+.|.+.
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 99986532 2233221 001 012 245678999999999998888753
No 252
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.02 E-value=1.2e-05 Score=74.60 Aligned_cols=108 Identities=19% Similarity=0.091 Sum_probs=67.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh--hCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRR--EKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~--~~~~k~~IlVLNK 283 (534)
...+.|+||... . ......+.++|++|+|+|+.++..... ..+...+.. ...+.|+|+|+||
T Consensus 77 ~~~l~Dt~G~~~--~-------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 141 (196)
T 2atv_A 77 SMEILDTAGQED--T-------------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNK 141 (196)
T ss_dssp EEEEEECCCCCC--C-------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEEC
T ss_pred EEEEEECCCCCc--c-------------cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEC
Confidence 456789999653 1 112235668999999999987643221 111122221 2357899999999
Q ss_pred CCCCChh-hHHHHHHHHhccCCeEEeeeccCCCC-ChHHHHHHHHHHh
Q psy6781 284 VDLVPIW-VTQRWVAILSKEYPTIAFHASMTHPF-GKGSIINLLRQFS 329 (534)
Q Consensus 284 iDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~~~-gi~~Li~~L~~~~ 329 (534)
+||.+.. ........+...+....|.+|++++. |++++++.|.+.+
T Consensus 142 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 142 ADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp GGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 9997532 11112222222223456788999999 9999988887644
No 253
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.02 E-value=3.1e-05 Score=71.39 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=38.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|++... ....+.++... ..+..+ -.+.|+||||...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcc
Confidence 468999999999999999999997642 12223333221 122333 2578999999753
No 254
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.02 E-value=1.1e-05 Score=86.86 Aligned_cols=105 Identities=13% Similarity=0.047 Sum_probs=62.0
Q ss_pred ccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC----CcHHHHHHH--HhhCCC
Q psy6781 201 YKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT----RCAHIENFL--RREKPH 274 (534)
Q Consensus 201 ~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s----~~~~le~~L--~~~~~~ 274 (534)
+..+..+..+.||||..+ +...+...+..+|++|+|+||+++... ......+++ ......
T Consensus 106 ~~~~~~~~~iiDTPG~~~--------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~ 171 (483)
T 3p26_A 106 FSTHRANFTIVDAPGHRD--------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI 171 (483)
T ss_dssp EECSSCEEEEECCCCCGG--------------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTC
T ss_pred EecCCceEEEEECCCcHH--------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCC
Confidence 333556788999999632 234455677899999999999986322 112222222 112223
Q ss_pred CcEEEEEeCCCCCCh--hhH---HHHHH-HHhc-cC---CeEEeeeccCCCCChH
Q psy6781 275 KHLFFILNKVDLVPI--WVT---QRWVA-ILSK-EY---PTIAFHASMTHPFGKG 319 (534)
Q Consensus 275 k~~IlVLNKiDLv~~--~~~---~~wl~-~l~~-~~---p~v~f~~Sa~~~~gi~ 319 (534)
+++|+|+||+||++. ... ...+. ++.. .+ ...+|.+||+++.|+.
T Consensus 172 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~ 226 (483)
T 3p26_A 172 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY 226 (483)
T ss_dssp CCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSS
T ss_pred CcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcc
Confidence 569999999999862 221 22222 2221 12 2456789999999986
No 255
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.02 E-value=6.2e-06 Score=77.01 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=40.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~~ 394 (534)
..++|+|+|.+|||||||+|+|.+.... ....|..+... ..+..+. .+.|+||||...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 4689999999999999999999976532 23334433332 2333433 689999999653
No 256
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.02 E-value=6.4e-06 Score=77.10 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=35.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~---~~i~liDtPGi~ 393 (534)
..++|+|+|.+|||||||+|+|++..... ...|..+.. ...+..+ ..+.|+||||..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 46899999999999999999999865422 223333322 2233333 378999999964
No 257
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.02 E-value=1.1e-05 Score=82.49 Aligned_cols=111 Identities=19% Similarity=0.168 Sum_probs=60.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e-CccEEEEeCCCcccCCCCCcchHHHHHccccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L-MRRIYLIDCPGVVYDMTNVETDTEKVLRGVVR 412 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~-~~~i~liDtPGi~~p~~~~~~~~e~vL~gvv~ 412 (534)
+.++|+|+|.+|||||||+|+|.+....... | |....... . ...+.|+||||-..-. ......+.++..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~--p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~~~~~~~ad~ 235 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNISFTVWDVGGQDKIR----PLWRHYFQNTQG 235 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE--E--ETTEEEEEEEETTEEEEEEECC-----C----CSHHHHHTTEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc--c--ccceEEEEEecCcEEEEEEECCCCHhHH----HHHHHHhccCCE
Confidence 5789999999999999999999987654332 3 33322222 2 3478999999943221 223333332211
Q ss_pred ---cccCCCc------hhhHHHHHHhh---ccceeeehcCCCCCC--CHHHHHHHH
Q psy6781 413 ---VENIDDP------VQYIDAVLERI---KKVHLVKTYGIDEWE--DTEDFLKKL 454 (534)
Q Consensus 413 ---v~~i~~~------~~~i~~iL~r~---~k~~l~~~ykId~~~--d~~efLe~l 454 (534)
+-.+.++ ...+..++... ..+.+.+.||+|... +..++...+
T Consensus 236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~ 291 (329)
T 3o47_A 236 LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 291 (329)
T ss_dssp EEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHh
Confidence 1112121 12233333333 456788899999754 334444433
No 258
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.01 E-value=1.2e-05 Score=85.44 Aligned_cols=56 Identities=38% Similarity=0.625 Sum_probs=45.0
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEeC--ccEEEEeCCCccc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLM--RRIYLIDCPGVVY 394 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~~--~~i~liDtPGi~~ 394 (534)
-.|+++|+||+|||||||+|++... .++..|.+|..... +... ..+.++||||+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 4589999999999999999998764 67888988876543 3333 5689999999864
No 259
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.01 E-value=2.9e-06 Score=75.92 Aligned_cols=107 Identities=15% Similarity=0.088 Sum_probs=65.1
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---h-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---R-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~-~~~~k~~IlVLN 282 (534)
...+.|+||...... .....+.++|++|+|+|+.++... ..+..++. . ...+.|+++|+|
T Consensus 56 ~l~i~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~n 119 (170)
T 1z08_A 56 NLAIWDTAGQERFHA--------------LGPIYYRDSNGAILVYDITDEDSF--QKVKNWVKELRKMLGNEICLCIVGN 119 (170)
T ss_dssp EEEEEECCCC---------------------CCSSTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHGGGSEEEEEEE
T ss_pred EEEEEECCCcHhhhh--------------hHHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 456779999532111 111245689999999999876432 22333322 1 224689999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+||.+... .......+.+......|.+|++++.|+++|++.|.+.+
T Consensus 120 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 999975321 11122223233334567889999999999998887543
No 260
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.00 E-value=6.3e-06 Score=75.13 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=38.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceee-eEEEEeC------------ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKV-WQYITLM------------RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~-~~~~~~~------------~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++..... ..+..|.+.. ...+..+ ..+.|+||||..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 46899999999999999999999754311 1222222221 1222222 268999999974
No 261
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.00 E-value=1.3e-05 Score=74.88 Aligned_cols=59 Identities=19% Similarity=0.074 Sum_probs=35.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~~ 394 (534)
..++|+++|.||||||||+|+|++....-+...+.++.+ ...+.++. .+.++||+|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 468999999999999999999996432222333332222 12233333 457899999653
No 262
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.00 E-value=4.3e-06 Score=75.56 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=38.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEEEEeC----ccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLM----RRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~~~~~----~~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|++.... ...+..|.......+..+ ..+.|+||||...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 5689999999999999999999976532 111222222222223332 3689999999653
No 263
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.00 E-value=1.7e-05 Score=78.62 Aligned_cols=120 Identities=11% Similarity=0.088 Sum_probs=60.9
Q ss_pred eeEEecCCCCcCCCchh-hhhhhhHHHHHHHHHHHhhh-------------cCEEEEEEeCCC-CCCCCcHHHHHHHHhh
Q psy6781 207 FDIVRDNGGVTDAPRDW-VMAAGQSKRIWGELYKVIDS-------------SDVVVYVLDVRD-PMGTRCAHIENFLRRE 271 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~-l~~a~lskr~~~el~kvI~n-------------sDvVL~VvDAR~-Pl~s~~~~le~~L~~~ 271 (534)
...+.||||+.+..... .+. .+...+..+....+.. +|++++++|+.. ++...+..+.+.+.
T Consensus 66 ~l~liDTpG~~d~~~~~~~~~-~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~-- 142 (274)
T 3t5d_A 66 LLTIVDTPGFGDAVDNSNCWQ-PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-- 142 (274)
T ss_dssp EEEEEECCCCSCCSCCTTTTH-HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT--
T ss_pred EEEEEECCCccccccchhhHH-HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh--
Confidence 56789999985432110 000 1222222333333443 788888886543 44444434444443
Q ss_pred CCCCcEEEEEeCCCCCChhhHHHHHHHHhc---cCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 272 KPHKHLFFILNKVDLVPIWVTQRWVAILSK---EYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 272 ~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~---~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
.++|+|+|+||+|+.+........+.+.+ .....+|.+|+.++.|...|.+.|.+.++
T Consensus 143 -~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 143 -EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp -TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred -ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 27999999999999876655443333222 22333566788899999999888886543
No 264
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.99 E-value=3.1e-05 Score=70.09 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=56.5
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHH---HHHh-h---CCCCcEEEEEeCCCCC-------ChhhHHHHHHHHhccCCe
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIEN---FLRR-E---KPHKHLFFILNKVDLV-------PIWVTQRWVAILSKEYPT 305 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~---~L~~-~---~~~k~~IlVLNKiDLv-------~~~~~~~wl~~l~~~~p~ 305 (534)
.+.++|++|+|+|+.++.+.. .+.. ++.. . .++.|+|+|.||+||. .......|...+ ...
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~---~~~ 143 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSFQ--AVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM---KRC 143 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH---SSE
T ss_pred HHHhCCEEEEEEECcCHHHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh---cCC
Confidence 456899999999998775432 3333 2322 1 2578999999999993 222233333322 234
Q ss_pred EEeeeccCCCCChHHHHHHHHHHh
Q psy6781 306 IAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 306 v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
..|.+|++++.|++++.+.|.+.+
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHH
Confidence 567889999999999988886543
No 265
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.99 E-value=3.5e-06 Score=83.46 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=69.0
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCC-CcEEEEEeCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPH-KHLFFILNKV 284 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~-k~~IlVLNKi 284 (534)
....+.||||....... .... .....+-...++|++|+|+|+..+ .++..+...+.. .+ +|+++|+||+
T Consensus 50 ~~~~l~DtpG~~~~~~~-----~~~~-~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~--~~~~p~ilv~NK~ 119 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAH-----SIDE-LIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFE--MEVKNIILVLNKF 119 (271)
T ss_dssp EEEEEEECCCCSCCCSS-----CHHH-HHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHH--TTCCSEEEEEECH
T ss_pred ceEEEEeCCCccccccC-----CHHH-HHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHh--cCCCCEEEEEECh
Confidence 34678999997543221 1122 222233345789999999999864 122222222222 34 9999999999
Q ss_pred CCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 285 DLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
||.+........+.+.+.+...++.+|+.++.|+++|++.|...+
T Consensus 120 Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 120 DLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp HHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred hcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 986543211112223332233467789999999999999887654
No 266
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.99 E-value=2.5e-05 Score=84.96 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred CChHHHHHHHHHHhhhh------ccccceEEEEEecCCCchhHHHHhhhCCCce-eeCCCCCceeeeEE------EEe--
Q psy6781 316 FGKGSIINLLRQFSKLH------TERKQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQY------ITL-- 380 (534)
Q Consensus 316 ~gi~~Li~~L~~~~~~~------~~~~~~~v~vvG~pnvGKSSliN~L~~~~~~-~v~~~pgtTk~~~~------~~~-- 380 (534)
.|...++++++++.... .....++|+++|.||||||||+|+|++.... ...+..|.+..... +.+
T Consensus 14 ~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~ 93 (535)
T 3dpu_A 14 QGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD 93 (535)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCS
T ss_pred hCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecC
Confidence 57888888888876521 1235799999999999999999999986531 11222222211100 011
Q ss_pred ---CccEEEEeCCCcccCCCCCcchHHHHHcc------ccccccCCCchhhHHHHHHhhc--cceeeehcCCCCCC
Q psy6781 381 ---MRRIYLIDCPGVVYDMTNVETDTEKVLRG------VVRVENIDDPVQYIDAVLERIK--KVHLVKTYGIDEWE 445 (534)
Q Consensus 381 ---~~~i~liDtPGi~~p~~~~~~~~e~vL~g------vv~v~~i~~~~~~i~~iL~r~~--k~~l~~~ykId~~~ 445 (534)
...+.++||||...-. . .....+.. ++.+... +...++...+.... .+.+.+.||+|...
T Consensus 94 ~~~~~~~~i~Dt~G~e~~~--~--~~~~~l~~~d~ii~V~D~s~~-~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 94 ELKECLFHFWDFGGQEIMH--A--SHQFFMTRSSVYMLLLDSRTD-SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp TTTTCEEEEECCCSCCTTT--T--TCHHHHHSSEEEEEEECGGGG-GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred CCceEEEEEEECCcHHHHH--H--HHHHHccCCcEEEEEEeCCCc-hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 2468999999953222 1 12223322 2222211 11123333344433 67788899999653
No 267
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.98 E-value=1.7e-05 Score=87.93 Aligned_cols=109 Identities=14% Similarity=0.066 Sum_probs=72.7
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||..+ + ..++...+..+|.+|+|+||.++...........+. ..+.|+|+|+||+||
T Consensus 74 ~inliDTPGh~d-----F---------~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~--~~~ipiIvviNKiDl 137 (600)
T 2ywe_A 74 KLHLIDTPGHVD-----F---------SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV--EQDLVIIPVINKIDL 137 (600)
T ss_dssp EEEEECCCCSGG-----G---------HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH--HTTCEEEEEEECTTS
T ss_pred EEEEEECCCcHh-----H---------HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH--HCCCCEEEEEeccCc
Confidence 455889999642 1 123455678999999999999875543222222222 257999999999999
Q ss_pred CChhhHHHHHHHHhccCC---eEEeeeccCCCCChHHHHHHHHHHhhhh
Q psy6781 287 VPIWVTQRWVAILSKEYP---TIAFHASMTHPFGKGSIINLLRQFSKLH 332 (534)
Q Consensus 287 v~~~~~~~wl~~l~~~~p---~v~f~~Sa~~~~gi~~Li~~L~~~~~~~ 332 (534)
.... .....+.+.+.+. ..++.+|++++.|++.|++.|.+.++..
T Consensus 138 ~~a~-~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 138 PSAD-VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp TTCC-HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred cccC-HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 7532 2222333333221 2367889999999999999998877644
No 268
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.98 E-value=6.9e-06 Score=86.33 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=70.7
Q ss_pred ccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCc-EEE
Q psy6781 201 YKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKH-LFF 279 (534)
Q Consensus 201 ~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~-~Il 279 (534)
+........+.||||..+ +...+...+..+|++|+|+|+.++..........++.. .+.| +|+
T Consensus 70 ~~~~~~~~~iiDtpG~~~--------------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iiv 133 (405)
T 2c78_A 70 YETAKRHYSHVDCPGHAD--------------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVV 133 (405)
T ss_dssp EECSSCEEEEEECCCSGG--------------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEE
T ss_pred eccCCeEEEEEECCChHH--------------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEE
Confidence 333445678899999532 12345566789999999999998764332223333332 4677 789
Q ss_pred EEeCCCCCCh-hhHH----HHHHHHhcc-C---CeEEeeeccCCCCC------------------hHHHHHHHHHHhh
Q psy6781 280 ILNKVDLVPI-WVTQ----RWVAILSKE-Y---PTIAFHASMTHPFG------------------KGSIINLLRQFSK 330 (534)
Q Consensus 280 VLNKiDLv~~-~~~~----~wl~~l~~~-~---p~v~f~~Sa~~~~g------------------i~~Li~~L~~~~~ 330 (534)
|+||+||.+. .... ...+.+... + ...++.+|++++.| +..|++.|..+++
T Consensus 134 viNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp EEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred EEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 9999999852 2111 122222221 1 13467788887765 6778888877665
No 269
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.98 E-value=6.5e-06 Score=88.40 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=40.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe-CccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL-MRRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~-~~~i~liDtPGi~~ 394 (534)
..++|+++|.||||||||+|+|++.......+..|.+.. .+.. +..+.|+||||...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~--~~~~~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTYKNVKFNVWDVGGQDK 378 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEESSSCEEEEEEECCCGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEE--EEEeCCEEEEEEECCCcHH
Confidence 568999999999999999999998774443333333322 2222 34799999999643
No 270
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.96 E-value=3.7e-05 Score=72.16 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=62.6
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHH----HHHh---hCCCCcEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIEN----FLRR---EKPHKHLF 278 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~----~L~~---~~~~k~~I 278 (534)
....+.||||... ....++. ..+..+|++|+|+|+.++... ...+.+ .+.. ...+.|+|
T Consensus 54 ~~~~i~Dt~G~~~----------~~~~~~~---~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pii 119 (214)
T 2fh5_B 54 NSLTLIDLPGHES----------LRFQLLD---RFKSSARAVVFVVDSAAFQRE-VKDVAEFLYQVLIDSMALKNSPSLL 119 (214)
T ss_dssp CEEEEEECCCCHH----------HHHHHHH---HHGGGEEEEEEEEETTTHHHH-HHHHHHHHHHHHHHHHTSTTCCEEE
T ss_pred cEEEEEECCCChh----------HHHHHHH---HHHhhCCEEEEEEECCCcCHH-HHHHHHHHHHHHhhhhhcccCCCEE
Confidence 3466789999521 1111222 247899999999999763211 112222 2221 13478999
Q ss_pred EEEeCCCCCChhhHHHHHHHH----h-------------------c-------------cC--CeEEeeeccCCC-----
Q psy6781 279 FILNKVDLVPIWVTQRWVAIL----S-------------------K-------------EY--PTIAFHASMTHP----- 315 (534)
Q Consensus 279 lVLNKiDLv~~~~~~~wl~~l----~-------------------~-------------~~--p~v~f~~Sa~~~----- 315 (534)
+|+||+||.+........+.+ . + .. ....|.+||+++
T Consensus 120 lv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~ 199 (214)
T 2fh5_B 120 IACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTG 199 (214)
T ss_dssp EEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------
T ss_pred EEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccc
Confidence 999999997643222222211 1 1 01 344677899999
Q ss_pred -CChHHHHHHHHH
Q psy6781 316 -FGKGSIINLLRQ 327 (534)
Q Consensus 316 -~gi~~Li~~L~~ 327 (534)
.|+++|.+.|.+
T Consensus 200 ~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 200 SADIQDLEKWLAK 212 (214)
T ss_dssp CCBCHHHHHHHHH
T ss_pred ccChHHHHHHHHH
Confidence 999999988865
No 271
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=4.8e-06 Score=78.69 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=66.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLN 282 (534)
...+.||||... + . ......+.++|++|+|+|+.++.... .+..++ .. ...+.|+|+|+|
T Consensus 76 ~l~l~Dt~G~~~-----~------~---~~~~~~~~~~d~~i~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~N 139 (201)
T 2ew1_A 76 KLQIWDTAGQER-----F------R---SITQSYYRSANALILTYDITCEESFR--CLPEWLREIEQYASNKVITVLVGN 139 (201)
T ss_dssp EEEEEEECCSGG-----G------H---HHHGGGSTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCcHH-----H------H---HHHHHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEE
Confidence 456789999421 1 1 11234567999999999998764322 122332 22 234789999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||..... .......+........|.+|++++.|+++|++.|.+.+.
T Consensus 140 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 140 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp CGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999974321 111112222222234577899999999999888876543
No 272
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.96 E-value=1.2e-05 Score=76.20 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=32.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++..... ....++... ..+.... .+.|+||||..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 57899999999999999999999865321 222222221 1223332 58899999964
No 273
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.96 E-value=8.9e-06 Score=77.43 Aligned_cols=109 Identities=13% Similarity=0.066 Sum_probs=65.8
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLN 282 (534)
...+.||||...... + ....+.++|++|+|+|+.++... ..+..++ .. ...++|+|||+|
T Consensus 63 ~~~i~Dt~G~~~~~~--~------------~~~~~~~~d~vilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~n 126 (223)
T 3cpj_B 63 KAQIWDTAGQERYRA--I------------TSAYYRGAVGALIVYDISKSSSY--ENCNHWLSELRENADDNVAVGLIGN 126 (223)
T ss_dssp EEEEECCTTTTTTTC--C------------CGGGTTTCCEEEEEEC-CCHHHH--HHHHHHHHHHHHHCC--CEEEEEEC
T ss_pred EEEEEECCCccchhh--h------------HHHHhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 456789999543211 1 11245689999999999876443 2233333 22 234789999999
Q ss_pred CCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 283 KVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 283 KiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
|+||.+... .......+...+....|.+|++++.|+++|++.|.+.+..
T Consensus 127 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred CcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999975321 1112222323334456778999999999999888766543
No 274
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.96 E-value=2.3e-05 Score=83.22 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=67.2
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCC-cEEEEEe
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHK-HLFFILN 282 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k-~~IlVLN 282 (534)
+.....+.||||..+ + . ..+...+..+|++|+|+||+++..........++.. .+. ++|+|+|
T Consensus 102 ~~~~~~iiDtpGh~~-----f-----~----~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~--~~~~~iIvviN 165 (434)
T 1zun_B 102 AKRKFIIADTPGHEQ-----Y-----T----RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--LGIKHIVVAIN 165 (434)
T ss_dssp SSEEEEEEECCCSGG-----G-----H----HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEEE
T ss_pred CCceEEEEECCChHH-----H-----H----HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEE
Confidence 344577899999431 1 1 223345789999999999998764322222222222 244 6899999
Q ss_pred CCCCCCh--hh----HHHHHHHHhccC---C-eEEeeeccCCCCChHH------------HHHHHHHH
Q psy6781 283 KVDLVPI--WV----TQRWVAILSKEY---P-TIAFHASMTHPFGKGS------------IINLLRQF 328 (534)
Q Consensus 283 KiDLv~~--~~----~~~wl~~l~~~~---p-~v~f~~Sa~~~~gi~~------------Li~~L~~~ 328 (534)
|+||.+. .. ...+.+++.... . ..++.+|++++.|+.+ |+++|..+
T Consensus 166 K~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i 233 (434)
T 1zun_B 166 KMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETV 233 (434)
T ss_dssp CTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHS
T ss_pred cCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcC
Confidence 9999862 21 122333333322 2 4567889999999876 77777664
No 275
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.96 E-value=3.6e-06 Score=78.03 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=18.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCcee-e--eEEEEeCc-----cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK-V--WQYITLMR-----RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk-~--~~~~~~~~-----~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++.........+.++. + ...+..+. .+.|+||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 46899999999999999999999873222233333332 1 22233332 58999999974
No 276
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.20 E-value=1.1e-06 Score=82.30 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=55.6
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCCCCChhhHHH-------------HHHHHhccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVDLVPIWVTQR-------------WVAILSKEYP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~-------------wl~~l~~~~p 304 (534)
.+.++|++|+|+|+.++....+. .+...+....+++|+|+|+||+||.+...... ....+.+.+.
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 46789999999999887654331 22223332233789999999999976431111 1111112222
Q ss_pred e-EEeeeccCCCCChHHHHHHHHH
Q psy6781 305 T-IAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 305 ~-v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
. ..|.+||+++.|+++|++.|.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 2 3567899999999998887753
No 277
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.95 E-value=1.1e-05 Score=73.11 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=37.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeC---ccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLM---RRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~---~~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|++.... .....++... ..+... -.+.|+||||...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHh
Confidence 4689999999999999999999965431 2222222211 112222 2467999999853
No 278
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.95 E-value=9e-06 Score=76.42 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=37.8
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEeC-c--cEEEEeCCCccc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLM-R--RIYLIDCPGVVY 394 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~~-~--~i~liDtPGi~~ 394 (534)
...++|+++|.+|||||||+|+|++... .+..++++..... +..+ . .+.|+||||...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchh
Confidence 3579999999999999999999996543 2333444433221 1222 2 356999999853
No 279
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.95 E-value=8.2e-06 Score=77.66 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=38.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceee-CCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v-~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+|+|.+|||||||+|+|.+...... .+..|.+.....+..+. .+.|+||||..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 468999999999999999999997654322 12223322222333443 68999999964
No 280
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.94 E-value=3.4e-05 Score=80.55 Aligned_cols=112 Identities=10% Similarity=0.031 Sum_probs=70.3
Q ss_pred ccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcE-EE
Q psy6781 201 YKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHL-FF 279 (534)
Q Consensus 201 ~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~-Il 279 (534)
+..+..+..+.||||..+ ++..+...+..+|++|+|+| .............++.. .+.|. |+
T Consensus 55 ~~~~~~~i~iiDtPGh~~--------------f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~iv 117 (370)
T 2elf_A 55 NDKEGRNMVFVDAHSYPK--------------TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGII 117 (370)
T ss_dssp ECSSSSEEEEEECTTTTT--------------CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEE
T ss_pred EecCCeEEEEEECCChHH--------------HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEE
Confidence 333455678899999532 12345556789999999999 64433211222222222 46777 99
Q ss_pred EEe-CCCCCChhhHHH----HHHHHhccC--CeEEee--eccCC---CCChHHHHHHHHHHhh
Q psy6781 280 ILN-KVDLVPIWVTQR----WVAILSKEY--PTIAFH--ASMTH---PFGKGSIINLLRQFSK 330 (534)
Q Consensus 280 VLN-KiDLv~~~~~~~----wl~~l~~~~--p~v~f~--~Sa~~---~~gi~~Li~~L~~~~~ 330 (534)
|+| |+|| +...... ..+++.... ...+|. +||.+ +.|+++|++.|.++++
T Consensus 118 vvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 118 ALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp EECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred EEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 999 9999 6543222 222222211 135677 89999 9999999998887655
No 281
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.94 E-value=7.8e-07 Score=97.43 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=62.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEE--e--CccEEEEeCCCcccCCCC---CcchHHHHHc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT--L--MRRIYLIDCPGVVYDMTN---VETDTEKVLR 408 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~--~--~~~i~liDtPGi~~p~~~---~~~~~e~vL~ 408 (534)
+..+|+++|.+|+|||||+|+|++.... ....||+|.+..... + +..+.|+||||...-... ....++.++.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 3567899999999999999999986643 346788887643222 2 347999999996421100 1111222222
Q ss_pred cccccccCCCchhhHHHHHHhhccceeeehcCCCCC
Q psy6781 409 GVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 409 gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
.+...+............+.....+.+...||+|..
T Consensus 82 VVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp ECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGT
T ss_pred EEECCCCccHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 221112111111222334444556788888998854
No 282
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.94 E-value=3e-05 Score=73.58 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=36.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceee-CCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v-~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++...... .+..|.+.. ..+... -.+.|+||||..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCH
Confidence 478999999999999999999987653211 112222211 112222 268899999964
No 283
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.93 E-value=3.4e-05 Score=80.41 Aligned_cols=120 Identities=16% Similarity=0.062 Sum_probs=73.1
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHH---HHHHHHh-hCCCCcEEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAH---IENFLRR-EKPHKHLFFIL 281 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~---le~~L~~-~~~~k~~IlVL 281 (534)
....+.||+|+.....+.++.+ ++.++..+..+|++++|+|+.+|....... +.+.+.. ...++|+|+|+
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~------f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~ 299 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDA------FFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHH------HHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE
T ss_pred EEEEEEeCCCchhcCCHHHHHH------HHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE
Confidence 3456789999643222222111 344556688999999999998774111111 2333433 22578999999
Q ss_pred eCCCCCChhhH--HHHHHHH-hcc-CC-eEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 282 NKVDLVPIWVT--QRWVAIL-SKE-YP-TIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 282 NKiDLv~~~~~--~~wl~~l-~~~-~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
||+|+.+.... ......+ ... .+ ..++.+|++++.|++.|.+.|.+++..
T Consensus 300 NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 300 NKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp ECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 99999864311 1112111 111 22 235778999999999999999876543
No 284
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.92 E-value=1.1e-05 Score=76.27 Aligned_cols=57 Identities=12% Similarity=0.182 Sum_probs=38.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++.... ....|..+.+. ..+..+. .+.|+||||..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 4689999999999999999999876432 22223332222 2233333 68999999963
No 285
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.92 E-value=1.6e-05 Score=85.44 Aligned_cols=111 Identities=15% Similarity=0.063 Sum_probs=70.9
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHh-hCCCCcEEEEEe
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC--AHIENFLRR-EKPHKHLFFILN 282 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~-~~~~k~~IlVLN 282 (534)
....+.||+|...... + ....+.++|++|+|+|+.++..... ..+..++.. ...++|+|||+|
T Consensus 366 ~~~~l~Dt~G~~~~~~-----------~---~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~N 431 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRP-----------L---WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 431 (497)
T ss_dssp CEEEEEEECCCGGGSG-----------G---GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred EEEEEEECCCcHHHHH-----------H---HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEE
Confidence 3456789999533211 1 1235679999999999987643211 122222221 225799999999
Q ss_pred CCCCCChhhHHHHHHHHhcc----CCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 283 KVDLVPIWVTQRWVAILSKE----YPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 283 KiDLv~~~~~~~wl~~l~~~----~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
|+||.+..........+... ....+|.+||+++.|+++|++.|.+.+.
T Consensus 432 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 432 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp CCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred CCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99997643333333333221 2234678999999999999999987654
No 286
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.91 E-value=1.1e-05 Score=74.87 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=36.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeCc---cEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~~---~i~liDtPGi~~ 394 (534)
..++|+++|.+|||||||+|+|++... ....+.++.... .+..+. .+.|+||||...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 578999999999999999999998652 233444443322 122332 567999999853
No 287
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.91 E-value=7.6e-06 Score=77.74 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=58.6
Q ss_pred HhhhcCEEEEEEeCCCCCCCCc--HHHHHHHHhhCCCCcEEEEEeCCCCCCh-----------------hhHHHHHHHHh
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRC--AHIENFLRREKPHKHLFFILNKVDLVPI-----------------WVTQRWVAILS 300 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~--~~le~~L~~~~~~k~~IlVLNKiDLv~~-----------------~~~~~wl~~l~ 300 (534)
.+.++|++|+|+|+.++.+..+ ..+...+....++.|+|||.||+||.+. .....|...+
T Consensus 95 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 173 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL- 173 (214)
T ss_dssp GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH-
T ss_pred HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc-
Confidence 4568999999999998754322 1222334434568999999999999642 2223333322
Q ss_pred ccCCe-EEeeeccCCCCC-hHHHHHHHHHHhh
Q psy6781 301 KEYPT-IAFHASMTHPFG-KGSIINLLRQFSK 330 (534)
Q Consensus 301 ~~~p~-v~f~~Sa~~~~g-i~~Li~~L~~~~~ 330 (534)
.. ..|.+||+++.| +++|++.|.+.+.
T Consensus 174 ---~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 174 ---GAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp ---TCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred ---CCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 33 567889999998 9999888876543
No 288
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.90 E-value=3.5e-06 Score=77.90 Aligned_cols=121 Identities=16% Similarity=0.080 Sum_probs=66.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeeeEEEEeC---ccEEEEeCCCcccCCCCCcchHHHHHcccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVWQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGVV 411 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~~~~~~~---~~i~liDtPGi~~p~~~~~~~~e~vL~gvv 411 (534)
..++|+|+|.+|||||||+|+|++... ....+..|++.....+... ..+.|+||||..... ......+.++.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~d 97 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR----TITTAYYRGAM 97 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH----HHHHHHHTTCC
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH----HHHHHHHccCC
Confidence 468999999999999999999997542 1222333544444334332 258999999953211 11223333221
Q ss_pred c---cccCCCch--hhHHHH---HHh---hccceeeehcCCCCCC---CHHHHHHHHHHHhCC
Q psy6781 412 R---VENIDDPV--QYIDAV---LER---IKKVHLVKTYGIDEWE---DTEDFLKKLAFKWGK 460 (534)
Q Consensus 412 ~---v~~i~~~~--~~i~~i---L~r---~~k~~l~~~ykId~~~---d~~efLe~la~k~g~ 460 (534)
. +-.+.++. +.+..+ +.. ...+.+.+.+|+|... ...+....++...|.
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 160 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF 160 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC
Confidence 1 11122221 122222 222 2356778889999642 123445566666653
No 289
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.89 E-value=1.2e-05 Score=75.38 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=62.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGV 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gv 410 (534)
..++|+++|.+|||||||+|+|.+..... ...|..+.+ ...+..+. .+.|+||||..... ......+..+
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~~~~~~~~ 102 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR----TITQSYYRSA 102 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH----HHHHHHHTTC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH----HHHHHHHhhC
Confidence 46899999999999999999998765321 112222222 22233333 78999999964211 1223333322
Q ss_pred cc---cccCCCch------hhHHHHHHh--hccceeeehcCCCCCCC---HHHHHHHHHHHhCC
Q psy6781 411 VR---VENIDDPV------QYIDAVLER--IKKVHLVKTYGIDEWED---TEDFLKKLAFKWGK 460 (534)
Q Consensus 411 v~---v~~i~~~~------~~i~~iL~r--~~k~~l~~~ykId~~~d---~~efLe~la~k~g~ 460 (534)
.. +-.+.++. .++..+... ...+.+.+.+|+|.... ..+-+..++...|.
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDI 166 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCC
Confidence 11 11122221 122222222 23456788899997531 12334556666664
No 290
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.89 E-value=1.2e-05 Score=87.83 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=67.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce---------------eeC------CCCCceeee---EEEEeCccEEEEeCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC---------------KTA------PVPGETKVW---QYITLMRRIYLIDCPG 391 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~---------------~v~------~~pgtTk~~---~~~~~~~~i~liDtPG 391 (534)
...+|+++|.+|+|||||+|+|+..... .+. ...|.|... .+..-+..+.|+||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4689999999999999999999853110 011 134444322 1222245799999999
Q ss_pred cccCCCCCcchHHHHHcccccc-------ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhC
Q psy6781 392 VVYDMTNVETDTEKVLRGVVRV-------ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWG 459 (534)
Q Consensus 392 i~~p~~~~~~~~e~vL~gvv~v-------~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g 459 (534)
...-. ......+..+..+ +.+......+...+.....+.+...||+|... +..+.++.+....+
T Consensus 92 ~~df~----~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~ 163 (529)
T 2h5e_A 92 HEDFS----EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELK 163 (529)
T ss_dssp STTCC----HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred ChhHH----HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhC
Confidence 85322 1223333322111 11111112233344444567788999999764 56677888877755
No 291
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.88 E-value=3.7e-06 Score=76.66 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=24.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~~---~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|.+... .....|+++.+.. .+.++ ..+.|+||||..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 468999999999999999999997543 2233344443332 23333 368999999964
No 292
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.86 E-value=3.2e-05 Score=81.17 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=68.3
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCc-EEEEEe
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKH-LFFILN 282 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~-~IlVLN 282 (534)
......+.||||.. .+...+...+..+|++|+|+||.+...........++.. .+.| +|+|+|
T Consensus 64 ~~~~~~iiDtpG~~--------------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviN 127 (397)
T 1d2e_A 64 AARHYAHTDCPGHA--------------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVN 127 (397)
T ss_dssp SSCEEEEEECSSHH--------------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEE
T ss_pred CCeEEEEEECCChH--------------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEE
Confidence 34567789999942 123345566789999999999998654322222233332 4677 689999
Q ss_pred CCCCCC-hhhH----HHHHHHHhc-cCC---eEEeeeccCCCCC----------hHHHHHHHHHHhhh
Q psy6781 283 KVDLVP-IWVT----QRWVAILSK-EYP---TIAFHASMTHPFG----------KGSIINLLRQFSKL 331 (534)
Q Consensus 283 KiDLv~-~~~~----~~wl~~l~~-~~p---~v~f~~Sa~~~~g----------i~~Li~~L~~~~~~ 331 (534)
|+|+.+ .... ....+.+.. .++ ..++.+|++++.+ +..|++.|.++++.
T Consensus 128 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 128 KADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp CGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 999985 2211 122222222 121 3457778876543 67888888876653
No 293
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.86 E-value=1.3e-05 Score=74.81 Aligned_cols=108 Identities=18% Similarity=0.087 Sum_probs=67.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-----hCCCCcEEEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-----EKPHKHLFFIL 281 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-----~~~~k~~IlVL 281 (534)
...+.||||....... ....+.++|++|+|+|+.++... ..+..++.. ...++|+|+|+
T Consensus 73 ~~~l~Dt~G~~~~~~~--------------~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~ 136 (201)
T 3oes_A 73 HLHLVDTAGQDEYSIL--------------PYSFIIGVHGYVLVYSVTSLHSF--QVIESLYQKLHEGHGKTRVPVVLVG 136 (201)
T ss_dssp EEEEEEECCCCTTCCC--------------CGGGTTTCCEEEEEEETTCHHHH--HHHHHHHHHHHC-----CCCEEEEE
T ss_pred EEEEEECCCccchHHH--------------HHHHHhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4567899996433221 11245689999999999876432 223333321 12478999999
Q ss_pred eCCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 282 NKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 282 NKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
||+||.+... .......+...+....|.+|++++.|+++|++.|.+.+.
T Consensus 137 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred ECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999975421 112222232222345678899999999999888876554
No 294
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.85 E-value=2.5e-05 Score=72.23 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=56.0
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hhh--CCCCcEEEEEeCCCCCC-------hhhHHHHHHHHhccCCeEE
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---RRE--KPHKHLFFILNKVDLVP-------IWVTQRWVAILSKEYPTIA 307 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~~--~~~k~~IlVLNKiDLv~-------~~~~~~wl~~l~~~~p~v~ 307 (534)
.+.++|++++|+|+.++.+.. .+..++ ... ..+.|+|+|.||+||.. ......|...+ .....
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~---~~~~~ 156 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQ--TVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL---KRCTY 156 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT---TTCEE
T ss_pred eecCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc---CCCeE
Confidence 456799999999998765432 223333 221 14689999999999942 22233333322 12456
Q ss_pred eeeccCCCCChHHHHHHHHHHh
Q psy6781 308 FHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 308 f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|.+|++++.|+++|++.|.+.+
T Consensus 157 ~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 157 YETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 7889999999999988886543
No 295
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.85 E-value=2.6e-05 Score=87.83 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=68.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC--c---ee------eCC------CCCceeeeEEE---EeCccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK--V---CK------TAP------VPGETKVWQYI---TLMRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~--~---~~------v~~------~pgtTk~~~~~---~~~~~i~liDtPGi~~p 395 (534)
...+|+++|.+|+|||||+|+|+... . .. +.+ .+|+|...... ..+..+.|+||||...-
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 45789999999999999999998421 1 01 111 34555443222 22457999999998643
Q ss_pred CCCCcchHHHHHcccccc-------ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhC
Q psy6781 396 MTNVETDTEKVLRGVVRV-------ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWG 459 (534)
Q Consensus 396 ~~~~~~~~e~vL~gvv~v-------~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g 459 (534)
. ......+..+..+ +.+......+...+.....+.+.+.||+|... +..+.++.+....+
T Consensus 89 ~----~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~ 156 (693)
T 2xex_A 89 T----VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQ 156 (693)
T ss_dssp C----HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHC
T ss_pred H----HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhC
Confidence 2 2233334332111 11111122333445556678888999999764 46677788777655
No 296
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.85 E-value=9.5e-06 Score=76.87 Aligned_cols=108 Identities=13% Similarity=0.041 Sum_probs=66.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
...+.||||...... + ....+.++|++|+|+|+.++..... ..+...+.....+.|+|+|+||+|
T Consensus 65 ~~~i~Dt~G~~~~~~-----------~---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~D 130 (221)
T 3gj0_A 65 KFNVWDTAGQEKFGG-----------L---RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 130 (221)
T ss_dssp EEEEEEECSGGGTSC-----------C---CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTT
T ss_pred EEEEEeCCChHHHhH-----------H---HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCc
Confidence 456789999532211 0 1124568999999999987644321 112222333345799999999999
Q ss_pred CCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 286 LVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 286 Lv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|.+......... +........|.+|++++.|++.|++.|.+.+
T Consensus 131 l~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 131 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp SSSCSSCGGGCC-HHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred cccccccHHHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 976432111111 1111223467789999999999998887543
No 297
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.84 E-value=7.1e-06 Score=87.13 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.6
Q ss_pred cccceEEEEEecCCCchhHHHHhhhCC
Q psy6781 334 ERKQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 334 ~~~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.+..++|+++|.+|+|||||+|+|++.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhh
Confidence 345689999999999999999999854
No 298
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.84 E-value=4.6e-06 Score=90.07 Aligned_cols=106 Identities=20% Similarity=0.194 Sum_probs=55.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc------eeeCCCCCceeeeEE--EEe-CccEEEEeCCCcccCCCCCcchHHHH
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV------CKTAPVPGETKVWQY--ITL-MRRIYLIDCPGVVYDMTNVETDTEKV 406 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~------~~v~~~pgtTk~~~~--~~~-~~~i~liDtPGi~~p~~~~~~~~e~v 406 (534)
..++|+++|.+|+|||||+|+|++... ......+|+|.+..+ +.. +..+.|+||||...-. ......
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~----~~~~~~ 93 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLI----RAVVSA 93 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHH----HHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHH----HHHHHH
Confidence 468999999999999999999998651 234556788865422 222 3479999999963211 011111
Q ss_pred Hccc------ccc-ccCCCchhhHHHHHHhhccceeeehcCCCCCC
Q psy6781 407 LRGV------VRV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE 445 (534)
Q Consensus 407 L~gv------v~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~ 445 (534)
+..+ +.+ +.+.........++.....+.+.+.||+|...
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG 139 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 1111 111 11111111223345556667789999999764
No 299
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.83 E-value=8.1e-06 Score=81.63 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=67.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||....... .....+++..+. ...+|+||+|+|+.+. .++..+...+.. .++|+|+|+||+|+
T Consensus 50 ~l~l~DtpG~~~~~~~-----~~~e~v~~~~~~-~~~~d~vi~V~D~t~~--e~~~~~~~~l~~--~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 50 DLEIQDLPGIYSMSPY-----SPEAKVARDYLL-SQRADSILNVVDATNL--ERNLYLTTQLIE--TGIPVTIALNMIDV 119 (272)
T ss_dssp TEEEEECCCCSCSSCS-----SHHHHHHHHHHH-TTCCSEEEEEEEGGGH--HHHHHHHHHHHH--TCSCEEEEEECHHH
T ss_pred eEEEEECCCcCccCCC-----ChHHHHHHHHHh-cCCCCEEEEEecCCch--HhHHHHHHHHHh--cCCCEEEEEEChhh
Confidence 4567899997543221 112233333222 2479999999999763 112222223332 57999999999998
Q ss_pred CChh----hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 287 VPIW----VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 287 v~~~----~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
.... ....+.+.+ ...++.+||.++.|+++|.+.|.+.+
T Consensus 120 ~~~~~~~~~~~~l~~~l----g~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 120 LDGQGKKINVDKLSYHL----GVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp HHHTTCCCCHHHHHHHH----TSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CCcCCcHHHHHHHHHHc----CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 6432 223343333 22367789999999999998887543
No 300
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.83 E-value=1.7e-05 Score=73.74 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=58.1
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC--ceeeeEEEEe----CccEEEEeCCCcccCCCCCcchHHHHHc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG--ETKVWQYITL----MRRIYLIDCPGVVYDMTNVETDTEKVLR 408 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg--tTk~~~~~~~----~~~i~liDtPGi~~p~~~~~~~~e~vL~ 408 (534)
...++|+++|.+|||||||+|.|.+..... ...| .|.......+ .-.+.|+||||...-.. ..-.....+.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~ 94 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD-PTFDYEMIFR 94 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC-TTCCHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHh-hhhhcccccc
Confidence 357899999999999999999999854322 2222 2222222221 24789999999643210 1100023333
Q ss_pred cc---cccccCCCc----hhhHHHHHHhh-----ccceeeehcCCCCCC
Q psy6781 409 GV---VRVENIDDP----VQYIDAVLERI-----KKVHLVKTYGIDEWE 445 (534)
Q Consensus 409 gv---v~v~~i~~~----~~~i~~iL~r~-----~k~~l~~~ykId~~~ 445 (534)
++ +-+-.+.+. ...+..++... ..+.+.+.||+|...
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 22 111112222 13333444443 456788889999764
No 301
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.82 E-value=6.3e-05 Score=83.34 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=70.0
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||..+-...+ ...+..+|++|+|+|+.+..........+++.. .+.|+|+|+||+|+
T Consensus 71 ~i~liDTPGhe~F~~~~--------------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl 134 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLR--------------KRGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDR 134 (594)
T ss_dssp EEEEECCCTTSCCTTSB--------------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGG
T ss_pred CEEEEECCCcHHHHHHH--------------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEeccccc
Confidence 46789999964322210 123457999999999998654333333344443 57899999999999
Q ss_pred CChhh-------------------------HHHHHHHHhccC--------------CeEEeeeccCCCCChHHHHHHHHH
Q psy6781 287 VPIWV-------------------------TQRWVAILSKEY--------------PTIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 287 v~~~~-------------------------~~~wl~~l~~~~--------------p~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
.+.+. +......+.+.+ ...++.+||.++.|++.|++.|..
T Consensus 135 ~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~ 214 (594)
T 1g7s_A 135 IHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMG 214 (594)
T ss_dssp STTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHh
Confidence 75321 011222232211 134678899999999999999987
Q ss_pred Hhh
Q psy6781 328 FSK 330 (534)
Q Consensus 328 ~~~ 330 (534)
+++
T Consensus 215 ~~~ 217 (594)
T 1g7s_A 215 LAQ 217 (594)
T ss_dssp HHH
T ss_pred hcc
Confidence 664
No 302
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.82 E-value=2e-05 Score=72.05 Aligned_cols=111 Identities=18% Similarity=0.120 Sum_probs=67.9
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hCCCCcEEEEEeCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EKPHKHLFFILNKV 284 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~~~k~~IlVLNKi 284 (534)
....+.||||....... .....++...+. ...+|++++|+|+... ..+..++.. ...+.|+|+|+||+
T Consensus 54 ~~~~l~Dt~G~~~~~~~-----~~~~~~~~~~~~-~~~~~~~i~v~d~~~~-----~~~~~~~~~~~~~~~piilv~nK~ 122 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTAN-----SIDEIIARDYII-NEKPDLVVNIVDATAL-----ERNLYLTLQLMEMGANLLLALNKM 122 (188)
T ss_dssp EEEEEEECCCCSCCSSS-----SHHHHHHHHHHH-HHCCSEEEEEEEGGGH-----HHHHHHHHHHHTTTCCEEEEEECH
T ss_pred cEEEEEECCCcCccccc-----cHHHHHHHHHHh-ccCCCEEEEEecchhH-----HHHHHHHHHHHhcCCCEEEEEEhh
Confidence 34567899997543210 112233333322 2469999999998742 222233221 23578999999999
Q ss_pred CCCChh----hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 285 DLVPIW----VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 285 DLv~~~----~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
|+.... ....+.+.+ ....+.+|++++.|+++|.+.|...+..
T Consensus 123 Dl~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 123 DLAKSLGIEIDVDKLEKIL----GVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp HHHHHTTCCCCHHHHHHHH----TSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHh----CCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 986432 223333333 2345778999999999999988876553
No 303
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.82 E-value=2.2e-05 Score=71.98 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=37.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~---~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|.+..... ..+..+.+... .+..+ -.+.|+||||..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEEECCEEEEEEEEECCCCh
Confidence 56899999999999999999999764321 11222222111 12222 258899999964
No 304
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.81 E-value=5.9e-06 Score=86.73 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=40.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc----e-----------eeCCCCCceeeeEEEEe---CccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV----C-----------KTAPVPGETKVWQYITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~----~-----------~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~ 393 (534)
..++|+++|.+|+|||||+|+|++... . ......|.|....+..+ ...+.|+||||..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 468999999999999999999986310 0 01113566765443332 3579999999974
No 305
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.81 E-value=1.8e-05 Score=72.83 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=33.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCC-CCCceeeeEEEE--------eCccEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAP-VPGETKVWQYIT--------LMRRIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~-~pgtTk~~~~~~--------~~~~i~liDtPGi~ 393 (534)
.++|+++|.+|||||||+|.|++......+. .|....+..... ....+.++||||..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 4689999999999999999999853212222 222222222111 12368899999974
No 306
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.80 E-value=9.7e-05 Score=68.99 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=57.4
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---HhhC--CCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---RREK--PHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMT 313 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~~~--~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~ 313 (534)
.+..+|++|+|+|+.++.+.. .+..++ .... .+.|+|+|.||+||.+... .......+.+.+....|.+|++
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFS--KVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 170 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred hhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCC
Confidence 356899999999998764322 233332 2211 4789999999999975321 1111222322233456788999
Q ss_pred CCCChHHHHHHHHHHhh
Q psy6781 314 HPFGKGSIINLLRQFSK 330 (534)
Q Consensus 314 ~~~gi~~Li~~L~~~~~ 330 (534)
++.|+++|++.|...+.
T Consensus 171 ~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQIR 187 (195)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999988876543
No 307
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.78 E-value=3.8e-05 Score=75.45 Aligned_cols=84 Identities=14% Similarity=0.048 Sum_probs=55.8
Q ss_pred hcCEEEEEEeCCCC--CCCCcHHHHHHHHh-----hCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCC
Q psy6781 243 SSDVVVYVLDVRDP--MGTRCAHIENFLRR-----EKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHP 315 (534)
Q Consensus 243 nsDvVL~VvDAR~P--l~s~~~~le~~L~~-----~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~ 315 (534)
++|++|+|+|+.++ .+. ..+.+++.. ...+.|+|||+||+||.+........+..........|.+||+++
T Consensus 162 ~ad~vilV~D~t~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF--DDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CH--HHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhH--HHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 78999999999987 332 233333221 125799999999999987654433333332222334677899999
Q ss_pred CChHHHHHHHHHH
Q psy6781 316 FGKGSIINLLRQF 328 (534)
Q Consensus 316 ~gi~~Li~~L~~~ 328 (534)
.|+++|++.|.+.
T Consensus 240 ~gv~elf~~l~~~ 252 (255)
T 3c5h_A 240 VNVDLAFSTLVQL 252 (255)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999998888654
No 308
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.78 E-value=2.3e-05 Score=76.74 Aligned_cols=124 Identities=11% Similarity=0.001 Sum_probs=70.4
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhh----CCCCcEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRRE----KPHKHLFFI 280 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~----~~~k~~IlV 280 (534)
..+..+.||||+.+..... .....+.+.+.++.....+|++|+|+|+.. +...+..+.+++... ..+.|+|+|
T Consensus 69 ~~~i~liDTPG~~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv 145 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSK--TDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVF 145 (247)
T ss_dssp TEEEEEEECCSCSSTTHHH--HSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred CcEEEEEECCCCCCCCCCc--HHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEE
Confidence 4467789999987543310 001122333334445599999999999974 433333444444331 125789999
Q ss_pred EeCCCCCChhhHH-------HHHHHHhccC--CeEEeeeccCC---CCChHHHHHHHHHHhhh
Q psy6781 281 LNKVDLVPIWVTQ-------RWVAILSKEY--PTIAFHASMTH---PFGKGSIINLLRQFSKL 331 (534)
Q Consensus 281 LNKiDLv~~~~~~-------~wl~~l~~~~--p~v~f~~Sa~~---~~gi~~Li~~L~~~~~~ 331 (534)
.||+||....... ..++.+.+.+ ...+|..++.. +.|+.+|++.+.+++..
T Consensus 146 ~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 146 TRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp ECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 9999997532110 1122222222 24445444322 46788888888877653
No 309
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.77 E-value=3.4e-05 Score=86.91 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=70.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHH-HHHHHhhCCCCcEEEEEeCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHI-ENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~l-e~~L~~~~~~k~~IlVLNKiD 285 (534)
...+.||||+..... ....+...+.++|+||+|+|+..+....+..+ .+.+. ..++|+++|+||+|
T Consensus 175 ~l~LiDTPGl~~~~~-----------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~--~~~~~iiiVlNK~D 241 (695)
T 2j69_A 175 GIEIVDSPGLNDTEA-----------RNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK--GRGLTVFFLVNAWD 241 (695)
T ss_dssp TEEEEECCCHHHHHT-----------CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT--TSCCCEEEEEECGG
T ss_pred CeEEEECCCCCchhh-----------HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH--hhCCCEEEEEECcc
Confidence 467899999753211 22345567789999999999998865433222 12232 24678999999999
Q ss_pred CCChh--------h-------HH-HHHHHHhcc--------CCeEEeeeccC--------------CCCChHHHHHHHHH
Q psy6781 286 LVPIW--------V-------TQ-RWVAILSKE--------YPTIAFHASMT--------------HPFGKGSIINLLRQ 327 (534)
Q Consensus 286 Lv~~~--------~-------~~-~wl~~l~~~--------~p~v~f~~Sa~--------------~~~gi~~Li~~L~~ 327 (534)
+.+.. . .. .+...+... ....+|.+|++ ++.|++.|.+.|.+
T Consensus 242 l~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~ 321 (695)
T 2j69_A 242 QVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNT 321 (695)
T ss_dssp GGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHH
T ss_pred cccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHH
Confidence 97542 1 11 111122211 11235778998 88999999998887
Q ss_pred Hhh
Q psy6781 328 FSK 330 (534)
Q Consensus 328 ~~~ 330 (534)
++.
T Consensus 322 ~l~ 324 (695)
T 2j69_A 322 FLT 324 (695)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 310
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.76 E-value=4.2e-06 Score=87.93 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=60.6
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCC--ce------ee--------CCCCCceeeeEEEEe---CccEEEEeCCCcccC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKK--VC------KT--------APVPGETKVWQYITL---MRRIYLIDCPGVVYD 395 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~--~~------~v--------~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p 395 (534)
+..++|+++|.+|+|||||+|+|++.. .. .. ...+|.|.+...... ...+.|+||||...-
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 357899999999999999999998630 00 00 013566665433322 357999999997531
Q ss_pred CCCCcchHHHHHccc------ccc-ccCCCchhhHHHHHHhhccc-eeeehcCCCCCCC
Q psy6781 396 MTNVETDTEKVLRGV------VRV-ENIDDPVQYIDAVLERIKKV-HLVKTYGIDEWED 446 (534)
Q Consensus 396 ~~~~~~~~e~vL~gv------v~v-~~i~~~~~~i~~iL~r~~k~-~l~~~ykId~~~d 446 (534)
. ......+..+ +.+ +...........++.....+ .+...||+|...+
T Consensus 89 ~----~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 89 I----KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp H----HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC
T ss_pred H----HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCc
Confidence 1 1111122211 111 11111112223344445555 5678999997754
No 311
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.76 E-value=3.7e-05 Score=74.72 Aligned_cols=115 Identities=17% Similarity=0.071 Sum_probs=68.8
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHH----HH-hhCCCCcEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENF----LR-REKPHKHLFFI 280 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~----L~-~~~~~k~~IlV 280 (534)
...++.||||...... ...+...+...+.. |+||+|+|+....... .+... +. ....++|.++|
T Consensus 109 ~d~iiiDtpG~~~~~~--------~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~iv 177 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFL--------FHEFGVRLMENLPY-PLVVYISDPEILKKPN--DYCFVRFFALLIDLRLGATTIPA 177 (262)
T ss_dssp CSEEEEECCSSHHHHH--------HSHHHHHHHHTSSS-CEEEEEECGGGCCSHH--HHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCEEEEeCCCccchhh--------hhhhHHHHHHHHhh-ceEEeccchhhhcCHH--HHHHHHHHHHHHhcccCCCeEEE
Confidence 3578999999642110 01123444455567 9999999986443322 22111 11 11136899999
Q ss_pred EeCCCCCChhhH---HHHHH-------HH------------------hccCC-eEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 281 LNKVDLVPIWVT---QRWVA-------IL------------------SKEYP-TIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 281 LNKiDLv~~~~~---~~wl~-------~l------------------~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
+||+|+.+.... ..+++ .+ .+..+ ..++.+|++++.|++.|++.|.+.++.
T Consensus 178 ~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 178 LNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp ECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 999999876422 22221 11 12122 245788999999999999999876653
No 312
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.76 E-value=1.2e-05 Score=75.62 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=63.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee--EEEEe-------------CccEEEEeCCCcccCCCCCc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW--QYITL-------------MRRIYLIDCPGVVYDMTNVE 400 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~--~~~~~-------------~~~i~liDtPGi~~p~~~~~ 400 (534)
..++|+|+|.+|||||||||+|++.... ....|..+.+. ..+.. ...+.|+||||.....
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---- 98 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR---- 98 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH----
Confidence 4689999999999999999999976531 11111111111 11111 2358999999953211
Q ss_pred chHHHHHccccc---cccCCCch--hhHHHHHHhh-------ccceeeehcCCCCCCC---HHHHHHHHHHHhC
Q psy6781 401 TDTEKVLRGVVR---VENIDDPV--QYIDAVLERI-------KKVHLVKTYGIDEWED---TEDFLKKLAFKWG 459 (534)
Q Consensus 401 ~~~e~vL~gvv~---v~~i~~~~--~~i~~iL~r~-------~k~~l~~~ykId~~~d---~~efLe~la~k~g 459 (534)
......+..+.. +-.+.++. +.+..++..+ ..+.+.+.+|+|.... ..+.+..++...+
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~ 172 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG 172 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC
Confidence 112223332211 11122222 2233334333 3456788899986431 2344566666655
No 313
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.75 E-value=5.9e-06 Score=89.77 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=62.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcccCCCC---CcchHHHHHcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVVYDMTN---VETDTEKVLRG 409 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~~p~~~---~~~~~e~vL~g 409 (534)
+...|+++|.+|+|||||+|+|++... ..+..+|.|.+.....+ +..+.|+||||...-... ....++.++..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 456799999999999999999987543 33445677765332222 357899999996432210 11112222222
Q ss_pred ccccccCCCchhhHHHHHHhhccceeeehcCCCCC
Q psy6781 410 VVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 410 vv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
+...+.+..........+.....+.+...||+|..
T Consensus 82 Vda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 82 VAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp EETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred eecccCccHHHHHHHHHHHhcCceEEEEEEecccc
Confidence 21112121111122233444566788899999964
No 314
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.75 E-value=6.8e-05 Score=68.96 Aligned_cols=90 Identities=8% Similarity=0.013 Sum_probs=58.4
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---hhCCCCcEEEEEeCCCCCChhhH----HHHHHHHhccCCe----EEe
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFLR---REKPHKHLFFILNKVDLVPIWVT----QRWVAILSKEYPT----IAF 308 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~~~~~k~~IlVLNKiDLv~~~~~----~~wl~~l~~~~p~----v~f 308 (534)
.+.++|++++|.|..++..+. ..+..++. ...++.|+|+|.||+||.+.... ....+.+.+.+.. ..+
T Consensus 76 ~~~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYH 154 (184)
T ss_dssp HHHHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEE
T ss_pred HccCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheE
Confidence 356799999999998764222 12333332 23357899999999999875433 2233444433322 267
Q ss_pred eeccCCCC-ChHHHHHHHHHHhh
Q psy6781 309 HASMTHPF-GKGSIINLLRQFSK 330 (534)
Q Consensus 309 ~~Sa~~~~-gi~~Li~~L~~~~~ 330 (534)
.+||+++. +++.|.+.|.+.+.
T Consensus 155 ~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 155 FVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp ECCTTSCCHHHHHHHHHHHHHHH
T ss_pred EEecccCchhHHHHHHHHHHHHh
Confidence 78999986 88888888876544
No 315
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.92 E-value=4.3e-06 Score=78.12 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=36.9
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeE--EEEe-C--ccEEEEeCCCcc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQ--YITL-M--RRIYLIDCPGVV 393 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~--~~~~-~--~~i~liDtPGi~ 393 (534)
...++|+++|.+|||||||+|+|++.... .....++.... .+.. + -.+.|+||||..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 89 (204)
Confidence 35789999999999999999999975431 22222322211 1111 1 246699999975
No 316
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.73 E-value=2.1e-05 Score=78.63 Aligned_cols=108 Identities=16% Similarity=0.082 Sum_probs=66.8
Q ss_pred eEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 208 DIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 208 ~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKiD 285 (534)
..+.|+||...... .....+.++|++|+|+|+.++.+..+. .+...+.....++|+|+|+||+|
T Consensus 205 ~~l~Dt~G~~~~~~--------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 270 (332)
T 2wkq_A 205 LGLWDTAGLEDYDR--------------LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270 (332)
T ss_dssp EEEEEECCCGGGTT--------------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHH
T ss_pred EEEEeCCCchhhhH--------------HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchh
Confidence 34789999643211 011245689999999999876543221 12233333345899999999999
Q ss_pred CCChhhHH-------------HHHHHHhccCC-eEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 286 LVPIWVTQ-------------RWVAILSKEYP-TIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 286 Lv~~~~~~-------------~wl~~l~~~~p-~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|.+..... .....+.+.+. ...|.+|++++.|+++|++.|.+.+
T Consensus 271 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 96532111 11111222222 2567889999999999998887643
No 317
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.72 E-value=2.9e-05 Score=74.46 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=37.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceee--eEEEEeCc---cEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV--WQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~--~~~~~~~~---~i~liDtPGi~ 393 (534)
..++|+++|.||||||||+|+|++....-+...+.++.+ ...+.++. .+.++||+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 468999999999999999999997543222333332222 22233332 46789999953
No 318
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.72 E-value=2.7e-05 Score=73.63 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=37.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeee-EEEEeC---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVW-QYITLM---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~-~~~~~~---~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|++.... ....|.+.... ..+..+ -.+.|+||||..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 4689999999999999999999986532 11122211111 112222 258899999964
No 319
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.72 E-value=4.4e-05 Score=71.14 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=37.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceee-CCCCCceeeeEEEEeCc---cEEEEeCCCccc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v-~~~pgtTk~~~~~~~~~---~i~liDtPGi~~ 394 (534)
.++|+++|.+|||||||+|+|++...... .+..|.+.....+.++. .+.++||||...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 57899999999999999999998653221 12223222222333333 467899999653
No 320
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.71 E-value=4e-05 Score=70.85 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=37.2
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEeCc---cEEEEeCCCcc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMR---RIYLIDCPGVV 393 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~ 393 (534)
...++|+++|.+|||||||+|+|++..... ...|........+.++. .+.|+||||..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQ-EESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCC-CCCTTCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCCcceEEEEEEECCEEEEEEEEECCCCh
Confidence 357999999999999999999998765322 11121111112223332 46789999964
No 321
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.70 E-value=1.2e-05 Score=72.90 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=32.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEe---CccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~---~~~i~liDtPGi~ 393 (534)
..++|+++|.+|||||||+|+|.+.... ...++++..... +.. .-.+.|+||||..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQE 67 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-C
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCCh
Confidence 4689999999999999999999975421 222222221100 111 2246699999964
No 322
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.70 E-value=1e-05 Score=84.41 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=36.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEEEEe---CccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~~~~---~~~i~liDtPGi~ 393 (534)
+|+++|.+|+|||||+|+|+ ..|.|.+..+... +..+.|+||||..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~ 71 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYP 71 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChH
Confidence 89999999999999999998 3455655433332 3579999999974
No 323
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.70 E-value=4.7e-05 Score=78.57 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.7
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCc
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKV 362 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~ 362 (534)
..|+|||.+|||||||+|+|++...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Confidence 4899999999999999999999654
No 324
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.70 E-value=1.5e-05 Score=73.09 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=64.1
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.|+||...... + ....+.++|++|+|+|+.++....+. .+...+....++.|+|+|.||+
T Consensus 56 ~~~i~Dt~G~~~~~~--~------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 121 (184)
T 1m7b_A 56 ELSLWDTSGSPYYDN--V------------RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121 (184)
T ss_dssp EEEEEEECCSGGGTT--T------------GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECG
T ss_pred EEEEEECCCChhhhh--h------------HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcc
Confidence 456789999532111 0 11245689999999999876443211 1222233334679999999999
Q ss_pred CCCCh-----------------hhHHHHHHHHhccCCeEEeeeccC-CCCChHHHHHHHHHH
Q psy6781 285 DLVPI-----------------WVTQRWVAILSKEYPTIAFHASMT-HPFGKGSIINLLRQF 328 (534)
Q Consensus 285 DLv~~-----------------~~~~~wl~~l~~~~p~v~f~~Sa~-~~~gi~~Li~~L~~~ 328 (534)
||.+. .....|.+.+ .....|.+|++ ++.|+++|++.|.+.
T Consensus 122 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQI---GAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp GGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH---TCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred hhhcchhhHhhhhhcccCCCCHHHHHHHHHHc---CCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 99742 1122222222 11346778997 678999988877654
No 325
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.68 E-value=2.2e-05 Score=86.02 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=83.4
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||...-.. .. ...+..+|++|+|+|+.++..........++. ..+.|+|+|+||+|+
T Consensus 53 ~i~~iDTPGhe~f~~--~~------------~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~--~~~vPiIVViNKiDl 116 (537)
T 3izy_P 53 KITFLDTPGHAAFSA--MR------------ARGTQVTDIVILVVAADDGVMKQTVESIQHAK--DAHVPIVLAINKCDK 116 (537)
T ss_dssp CCBCEECSSSCCTTT--SB------------BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHH--TTTCCEEECCBSGGG
T ss_pred EEEEEECCChHHHHH--HH------------HHHHccCCEEEEEEECCCCccHHHHHHHHHHH--HcCCcEEEEEecccc
Confidence 456789999533221 11 12345799999999999865543333333333 357899999999999
Q ss_pred CChh--hHHHHHHHH---hccC--CeEEeeeccCCCCChHHHHHHHHHHhhhhc--------------------cccceE
Q psy6781 287 VPIW--VTQRWVAIL---SKEY--PTIAFHASMTHPFGKGSIINLLRQFSKLHT--------------------ERKQIS 339 (534)
Q Consensus 287 v~~~--~~~~wl~~l---~~~~--p~v~f~~Sa~~~~gi~~Li~~L~~~~~~~~--------------------~~~~~~ 339 (534)
.+.. .....+..+ ...+ ...+|.+|++++.|++.|++.|..++.... ..+.+.
T Consensus 117 ~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~ 196 (537)
T 3izy_P 117 AEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVT 196 (537)
T ss_dssp TTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCE
T ss_pred cccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEE
Confidence 7431 111222222 1122 245778999999999999999887654211 123456
Q ss_pred EEEEecCCCchhHHH
Q psy6781 340 VGFIGYPNVGKSSII 354 (534)
Q Consensus 340 v~vvG~pnvGKSSli 354 (534)
.+.|+..++++++.+
T Consensus 197 ~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 197 TAIIQRGTLRKGSIL 211 (537)
T ss_dssp EEEEEEECCSSEEEE
T ss_pred EEEEecCEEEcCCEE
Confidence 678888888887754
No 326
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.68 E-value=5.4e-06 Score=77.28 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=58.3
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---h-hCCCCcEEEEEe
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---R-EKPHKHLFFILN 282 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~-~~~~k~~IlVLN 282 (534)
...+.|+||...... + ....+.++|++|+|+|+.++... ..+..++. . ...+.|+|+|+|
T Consensus 83 ~~~i~Dt~G~~~~~~--~------------~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~n 146 (199)
T 3l0i_B 83 KLQIWDTAGQERFRT--I------------TSSYYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGN 146 (199)
T ss_dssp EEEEECCTTCTTCCC--C------------SCC--CCCSEEEECC-CCCSHHH--HHHHHHHHHHHSCC-CCSEEEEC-C
T ss_pred EEEEEECCCcHhHHH--H------------HHHHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhccCCCCEEEEEE
Confidence 456789999543221 1 11245689999999999876432 23334432 2 123789999999
Q ss_pred CCCCCChh-----hHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 283 KVDLVPIW-----VTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 283 KiDLv~~~-----~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+||.+.. ....+.. .+....|.+|++++.|+++|++.|.+.+
T Consensus 147 K~Dl~~~~~v~~~~~~~~~~----~~~~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 147 KCDLTTKKVVDYTTAKEFAD----SLGIPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CSSCC--CCCCSCC-CHHHH----TTTCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred CccCCccccCCHHHHHHHHH----HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 99997542 2222322 2223356789999999999888876543
No 327
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.67 E-value=4.4e-05 Score=70.51 Aligned_cols=101 Identities=10% Similarity=0.037 Sum_probs=63.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---hh----CCCCcEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLR---RE----KPHKHLFF 279 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~~----~~~k~~Il 279 (534)
...+.||+|...... +...+.++|++|+|+|+.++.+.. .+..++. .. ..+.|+|+
T Consensus 70 ~l~i~Dt~G~~~~~~---------------~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piil 132 (187)
T 3c5c_A 70 HLRVMDTADLDTPRN---------------CERYLNWAHAFLVVYSVDSRQSFD--SSSSYLELLALHAKETQRSIPALL 132 (187)
T ss_dssp EEEEEECCC---CCC---------------THHHHTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred EEEEEECCCCCcchh---------------HHHHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhhccCCCCCEEE
Confidence 345689999542211 123567899999999998764332 2333322 11 25799999
Q ss_pred EEeCCCCCCh-----hhHHHHHHHHhccCCeEEeeecc-CCCCChHHHHHHHHHH
Q psy6781 280 ILNKVDLVPI-----WVTQRWVAILSKEYPTIAFHASM-THPFGKGSIINLLRQF 328 (534)
Q Consensus 280 VLNKiDLv~~-----~~~~~wl~~l~~~~p~v~f~~Sa-~~~~gi~~Li~~L~~~ 328 (534)
|+||+||... .....+...+ ....|.+|+ +++.|+++|.+.|.+.
T Consensus 133 v~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~e~Sa~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 133 LGNKLDMAQYRQVTKAEGVALAGRF----GCLFFEVSACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp EEECGGGGGGCSSCHHHHHHHHHHH----TCEEEECCSSSCSHHHHHHHHHHHHH
T ss_pred EEECcchhhcCccCHHHHHHHHHHc----CCcEEEEeecCccccHHHHHHHHHHH
Confidence 9999999643 2233333332 234678899 8999999998887654
No 328
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.66 E-value=7.8e-05 Score=83.92 Aligned_cols=120 Identities=16% Similarity=0.158 Sum_probs=66.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC-----ceee------CC------CCCceeeeEEE---EeCccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK-----VCKT------AP------VPGETKVWQYI---TLMRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~-----~~~v------~~------~pgtTk~~~~~---~~~~~i~liDtPGi~~p 395 (534)
...+|+|+|.+|+|||||+|+|+... ...+ .+ ..|.|...... ..+..+.||||||...-
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 46789999999999999999998310 0011 11 33555433222 22457999999998532
Q ss_pred CCCCcchHHHHHccccc------c-ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhC
Q psy6781 396 MTNVETDTEKVLRGVVR------V-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWG 459 (534)
Q Consensus 396 ~~~~~~~~e~vL~gvv~------v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g 459 (534)
. ......+..+.. . +.+......+...+.....+.+...||+|... +..+.++.+....+
T Consensus 91 ~----~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~ 158 (691)
T 1dar_A 91 T----IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLG 158 (691)
T ss_dssp H----HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTC
T ss_pred H----HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhC
Confidence 1 223333332211 1 11111112233345555677888999999764 56778888887765
No 329
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.66 E-value=0.00015 Score=85.49 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=72.5
Q ss_pred ccccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCc-EEE
Q psy6781 201 YKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKH-LFF 279 (534)
Q Consensus 201 ~~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~-~Il 279 (534)
|........+.||||.. .+...+...+..+|++|+|+|+.++...........+.. .+.| +|+
T Consensus 354 f~~~~~kI~IIDTPGHe--------------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIV 417 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIV 417 (1289)
T ss_dssp EECSSCEEEEEECCCHH--------------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEE
T ss_pred EcCCCEEEEEEECCChH--------------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEE
Confidence 33344567789999942 233455667889999999999998765544333333332 3677 789
Q ss_pred EEeCCCCCChhh-H----HHHHHHHhc-cC---CeEEeeeccCCC--------CChHHHHHHHHHHhh
Q psy6781 280 ILNKVDLVPIWV-T----QRWVAILSK-EY---PTIAFHASMTHP--------FGKGSIINLLRQFSK 330 (534)
Q Consensus 280 VLNKiDLv~~~~-~----~~wl~~l~~-~~---p~v~f~~Sa~~~--------~gi~~Li~~L~~~~~ 330 (534)
|+||+||.+... . ....+.+.. .+ ...++.+|++++ .|+..|++.|..+++
T Consensus 418 VINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 418 FLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp EEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred EEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 999999986321 1 122222322 11 134678899988 357788888877554
No 330
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.66 E-value=9.6e-05 Score=76.37 Aligned_cols=102 Identities=17% Similarity=0.106 Sum_probs=60.8
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
....++.||+|+.... ..+.+++|++++|+|+..+... ..+...+ ...+.++|+||+
T Consensus 166 ~~~~iliDT~Gi~~~~-----------------~~l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ivVlNK~ 222 (349)
T 2www_A 166 GYDIILIETVGVGQSE-----------------FAVADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMADLVAVTKS 222 (349)
T ss_dssp TCSEEEEECCCC--CH-----------------HHHHTTCSEEEEEECCC------------------CCSCSEEEECCC
T ss_pred CCCEEEEECCCcchhh-----------------hhHHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCCEEEEeee
Confidence 3457899999975321 1235799999999999765321 1121111 246789999999
Q ss_pred CCCChhhHH----HHHHHHhccC------CeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 285 DLVPIWVTQ----RWVAILSKEY------PTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 285 DLv~~~~~~----~wl~~l~~~~------p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+.+..... .+...+.... ...++.+|+.++.|++.|.+.|.++.
T Consensus 223 Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 223 DGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 997643222 2222222111 12356689999999999999998754
No 331
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.64 E-value=4.1e-05 Score=78.85 Aligned_cols=23 Identities=52% Similarity=0.842 Sum_probs=21.3
Q ss_pred cceEEEEEecCCCchhHHHHhhh
Q psy6781 336 KQISVGFIGYPNVGKSSIINALR 358 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~ 358 (534)
.+..++++|.||+|||||+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 56788999999999999999998
No 332
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.64 E-value=1.1e-05 Score=84.82 Aligned_cols=27 Identities=19% Similarity=0.513 Sum_probs=24.0
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
...++|+++|.+|+|||||+|+|++..
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 357899999999999999999999843
No 333
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.64 E-value=2.2e-05 Score=74.20 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=64.3
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH--HHHHHHHhhCCCCcEEEEEeCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA--HIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~--~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+.||+|...... + ....+.++|++|+|+|+.++...... .+...+....++.|+|+|.||+
T Consensus 77 ~l~i~Dt~G~~~~~~--~------------~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 142 (205)
T 1gwn_A 77 ELSLWDTSGSPYYDN--V------------RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 142 (205)
T ss_dssp EEEEEEECCSGGGTT--T------------GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECG
T ss_pred EEEEEeCCCcHhhhH--H------------HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEech
Confidence 456789999532111 1 11245689999999999876433211 1222233334679999999999
Q ss_pred CCCChh-------------hHHHHHHHHhccCC-eEEeeeccC-CCCChHHHHHHHHHH
Q psy6781 285 DLVPIW-------------VTQRWVAILSKEYP-TIAFHASMT-HPFGKGSIINLLRQF 328 (534)
Q Consensus 285 DLv~~~-------------~~~~wl~~l~~~~p-~v~f~~Sa~-~~~gi~~Li~~L~~~ 328 (534)
||.+.. ........+.+.+. ...|.+|++ ++.|+++|++.|.+.
T Consensus 143 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 143 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp GGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 997421 00111122222222 346778998 678999988887654
No 334
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.64 E-value=3.5e-05 Score=82.51 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
+..-|+|+|.+|+|||||+|.|.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4556889999999999999999863
No 335
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.62 E-value=0.00031 Score=79.14 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=50.4
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
..+..+.||||..+-. .++...+..+|.+|+|+|+..+.......+.+.+.. .++|+|+|+||+
T Consensus 74 ~~~i~liDTPG~~df~--------------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~ 137 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFT--------------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKM 137 (693)
T ss_dssp TEEEEEECCCCCSSCC--------------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECT
T ss_pred CeeEEEEECcCCcchH--------------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 4567789999975421 234556778999999999998766544444444443 479999999999
Q ss_pred CCCCh
Q psy6781 285 DLVPI 289 (534)
Q Consensus 285 DLv~~ 289 (534)
|+...
T Consensus 138 Dl~~~ 142 (693)
T 2xex_A 138 DKLGA 142 (693)
T ss_dssp TSTTC
T ss_pred Ccccc
Confidence 99754
No 336
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.61 E-value=7.1e-05 Score=69.56 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=37.4
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCcee-eCCCCCceeeeEEEEeCc---cEEEEeCCCccc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCK-TAPVPGETKVWQYITLMR---RIYLIDCPGVVY 394 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~-v~~~pgtTk~~~~~~~~~---~i~liDtPGi~~ 394 (534)
.++|+++|.+|||||||+|+|.+..... ..+..|.+.....+.++. .+.++||||...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 5789999999999999999999865322 122222222222233332 345799999753
No 337
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.61 E-value=6.2e-05 Score=77.59 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=67.3
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHh-hhcCEEEEEEeCCCCCCCCcHH-HHHHHHhhCCCCcEEEEEeC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVI-DSSDVVVYVLDVRDPMGTRCAH-IENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI-~nsDvVL~VvDAR~Pl~s~~~~-le~~L~~~~~~k~~IlVLNK 283 (534)
.+..+.||||+......... .....++-..+...+ ...|+||+|+|+..++...+.. +.+.+. ..+++.|+|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~--~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQP-PDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD--PQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCC-TTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC--TTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCc-hhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC--cCCCceEEEecc
Confidence 46789999998753210000 001112222223333 4567888899998765544321 333332 257899999999
Q ss_pred CCCCChhh-HHHHHHHHhccC----C-eEEeeeccCCCCChHHHHHHHHH
Q psy6781 284 VDLVPIWV-TQRWVAILSKEY----P-TIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 284 iDLv~~~~-~~~wl~~l~~~~----p-~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+||.+... ...+++ ...+ . ..++..|+.++.|++.|.+.+..
T Consensus 207 ~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 207 LDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccCcchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 99986532 222222 1111 1 24567788888888888887765
No 338
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.61 E-value=1.4e-05 Score=88.66 Aligned_cols=107 Identities=20% Similarity=0.204 Sum_probs=57.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCC-Cceee--eEEEEeC-------------------ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVP-GETKV--WQYITLM-------------------RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~p-gtTk~--~~~~~~~-------------------~~i~liDtPGi~ 393 (534)
+...|+++|.+|+|||||+|+|++.... ...| |.|.+ ..+.... ..+.|+||||..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 3578999999999999999999975432 2223 44443 1122110 148999999975
Q ss_pred cCCCCCc---chHHHHHccccccccCCCchhhHHHHHHhhccceeeehcCCCCC
Q psy6781 394 YDMTNVE---TDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEW 444 (534)
Q Consensus 394 ~p~~~~~---~~~e~vL~gvv~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~ 444 (534)
.-..... ..++.++..+...+.+..........+.....+.+...||+|..
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccc
Confidence 3221111 11122221111112121112223345556667789999999864
No 339
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.60 E-value=8.1e-05 Score=76.50 Aligned_cols=102 Identities=13% Similarity=-0.000 Sum_probs=63.3
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
....++.||||+.+... .++..+|++|+|+|+..+.... .+.... .++|.++|+||+
T Consensus 148 ~~~i~liDTpG~~~~~~-----------------~~~~~aD~vl~Vvd~~~~~~~~--~l~~~~----~~~p~ivv~NK~ 204 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET-----------------EVARMVDCFISLQIAGGGDDLQ--GIKKGL----MEVADLIVINKD 204 (341)
T ss_dssp TCSEEEEEEECCTTHHH-----------------HHHTTCSEEEEEECC------C--CCCHHH----HHHCSEEEECCC
T ss_pred CCCEEEEeCCCccchHH-----------------HHHHhCCEEEEEEeCCccHHHH--HHHHhh----hcccCEEEEECC
Confidence 44688999999763211 1357999999999986442111 011111 135789999999
Q ss_pred CCCChhhHHHHHHHHhc----cC------CeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 285 DLVPIWVTQRWVAILSK----EY------PTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 285 DLv~~~~~~~wl~~l~~----~~------p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
|+.+......+++.+.. .. ...++.+|+.++.|++.|++.|.+.+
T Consensus 205 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 205 DGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 99875433333333321 11 23467889999999999999998644
No 340
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.60 E-value=0.00023 Score=76.32 Aligned_cols=101 Identities=15% Similarity=0.075 Sum_probs=55.7
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCC-------CCcHHHHHHHHhhCCCCc
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMG-------TRCAHIENFLRREKPHKH 276 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~-------s~~~~le~~L~~~~~~k~ 276 (534)
+.....+.||||..+ +...+...+..+|++|+|+||++... .........+. ..+.|
T Consensus 119 ~~~~~~iiDtPGh~~--------------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~--~~~vp 182 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKG--------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR--TQGIN 182 (467)
T ss_dssp SSEEEEECCCCC-------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH--HTTCS
T ss_pred CCeEEEEEECCCcHH--------------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH--HcCCC
Confidence 345677899999532 22334456789999999999997631 11111112222 24676
Q ss_pred -EEEEEeCCCCCC----hhh----HHHHHHHHhc--cCC----eEEeeeccCCCCChHH
Q psy6781 277 -LFFILNKVDLVP----IWV----TQRWVAILSK--EYP----TIAFHASMTHPFGKGS 320 (534)
Q Consensus 277 -~IlVLNKiDLv~----~~~----~~~wl~~l~~--~~p----~v~f~~Sa~~~~gi~~ 320 (534)
+|+|+||+||.+ ... .....+++.. .+. ..++.+|++++.|+.+
T Consensus 183 ~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~ 241 (467)
T 1r5b_A 183 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241 (467)
T ss_dssp SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred EEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence 899999999964 111 1122222222 222 4467889999988764
No 341
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.59 E-value=0.00011 Score=70.72 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=46.2
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh---hCCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR---EKPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~---~~~~k~~IlVL 281 (534)
.....+.||||+.+.... .......+.+.+......+|++|+|+|+.. +...+......+.. ....+|+|+|+
T Consensus 77 ~~~i~liDTpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~ 152 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVP---NAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIF 152 (239)
T ss_dssp TEEEEEEECCSCC--------CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred CceEEEEECCCccCCCCC---HHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEE
Confidence 345678999998654321 012233444555555667899999999874 33332222222221 11346999999
Q ss_pred eCCCCCChhh
Q psy6781 282 NKVDLVPIWV 291 (534)
Q Consensus 282 NKiDLv~~~~ 291 (534)
||+|+.+...
T Consensus 153 nK~D~~~~~~ 162 (239)
T 3lxx_A 153 TRKDDLGDTN 162 (239)
T ss_dssp ECGGGC----
T ss_pred eCCccCCccc
Confidence 9999986543
No 342
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.59 E-value=8e-05 Score=82.72 Aligned_cols=105 Identities=13% Similarity=0.046 Sum_probs=61.3
Q ss_pred cccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCC----CCcHHHHHHHH-hhCCC-C
Q psy6781 202 KEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMG----TRCAHIENFLR-REKPH-K 275 (534)
Q Consensus 202 ~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~----s~~~~le~~L~-~~~~~-k 275 (534)
..+..+..+.||||... +...+...+..+|++|+|+||..+.. .......+++. ....+ +
T Consensus 241 ~~~~~~~~iiDTPG~e~--------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~ 306 (611)
T 3izq_1 241 STHRANFTIVDAPGHRD--------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH 306 (611)
T ss_dssp ECSSCEEEEEECCSSSC--------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCC
T ss_pred ecCCceEEEEECCCCcc--------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCC
Confidence 33455788999999632 23344556789999999999986410 00112222211 11234 4
Q ss_pred cEEEEEeCCCCCCh--hhH---HH-HHHHHhc-cC---CeEEeeeccCCCCChHH
Q psy6781 276 HLFFILNKVDLVPI--WVT---QR-WVAILSK-EY---PTIAFHASMTHPFGKGS 320 (534)
Q Consensus 276 ~~IlVLNKiDLv~~--~~~---~~-wl~~l~~-~~---p~v~f~~Sa~~~~gi~~ 320 (534)
++|+|+||+||++. ... .. ....+.. .+ ...+|.+||.++.|+..
T Consensus 307 ~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~e 361 (611)
T 3izq_1 307 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 361 (611)
T ss_dssp EEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSS
T ss_pred eEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccc
Confidence 58999999999872 111 11 2222221 12 13567899999999874
No 343
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.59 E-value=6.6e-05 Score=84.70 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=68.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC--ce---e------eCC------CCCceeeeEEEEe---C-------ccEEEEe
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK--VC---K------TAP------VPGETKVWQYITL---M-------RRIYLID 388 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~--~~---~------v~~------~pgtTk~~~~~~~---~-------~~i~liD 388 (534)
...+|+|+|.+|+|||||+++|+... .. . +.+ ..|.|.......+ + ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45789999999999999999997421 00 1 111 2455544322221 2 5789999
Q ss_pred CCCcccCCCCCcchHHHHHcccccc----c---cCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhC
Q psy6781 389 CPGVVYDMTNVETDTEKVLRGVVRV----E---NIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWG 459 (534)
Q Consensus 389 tPGi~~p~~~~~~~~e~vL~gvv~v----~---~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g 459 (534)
|||...-. ......++.+..+ + .+......+...+.....+.+...||+|... +..+.++.+....|
T Consensus 89 TPG~~df~----~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~ 163 (704)
T 2rdo_7 89 TPGHVDFT----IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLG 163 (704)
T ss_pred CCCccchH----HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhC
Confidence 99986322 1233333322111 1 1111112223334445567788899999753 56677777777655
No 344
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.58 E-value=1.7e-05 Score=87.88 Aligned_cols=110 Identities=18% Similarity=0.103 Sum_probs=59.7
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCC-------CCCcHHHHHHHHhhCCCCc-
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPM-------GTRCAHIENFLRREKPHKH- 276 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl-------~s~~~~le~~L~~~~~~k~- 276 (534)
.....+.||||..+..... ...+..+|++|+|+||..+. .........++.. .++|
T Consensus 254 ~~~i~iiDTPGh~~f~~~~--------------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~ 317 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGM--------------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISE 317 (592)
T ss_dssp -----CCEEESSSEEEEEC--------------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCC
T ss_pred CeEEEEEECCChHHHHHHH--------------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCe
Confidence 3456789999965322211 12345799999999999753 2222222223332 3565
Q ss_pred EEEEEeCCCCCC--hhhHH----HHHHHH-hc-cC---CeEEeeeccCCCCChH--------------HHHHHHHHHhh
Q psy6781 277 LFFILNKVDLVP--IWVTQ----RWVAIL-SK-EY---PTIAFHASMTHPFGKG--------------SIINLLRQFSK 330 (534)
Q Consensus 277 ~IlVLNKiDLv~--~~~~~----~wl~~l-~~-~~---p~v~f~~Sa~~~~gi~--------------~Li~~L~~~~~ 330 (534)
+|+|+||+||++ ..... .+...+ .. .+ ...++.+|++++.|+. .|++.|..+.+
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred EEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 889999999986 22222 222233 21 22 1346889999999987 78888887654
No 345
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.57 E-value=3.6e-05 Score=85.38 Aligned_cols=120 Identities=17% Similarity=0.073 Sum_probs=60.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCce--------e------eCCCCCceeeeEEEEe--------CccEEEEeCCCccc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVC--------K------TAPVPGETKVWQYITL--------MRRIYLIDCPGVVY 394 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~--------~------v~~~pgtTk~~~~~~~--------~~~i~liDtPGi~~ 394 (534)
-.+|+++|.+|+|||||+++|+..... . .....|.|.....+.+ ...+.||||||...
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 468999999999999999999852110 0 1112455654322221 13688999999853
Q ss_pred CCCCCcchHHHHHcccc------cc-ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 395 DMTNVETDTEKVLRGVV------RV-ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 395 p~~~~~~~~e~vL~gvv------~v-~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
-. ......+..+. .+ +.+..........+.....+.+...||+|... +.++.++.++...|.
T Consensus 84 F~----~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~ 153 (599)
T 3cb4_D 84 FS----YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGI 153 (599)
T ss_dssp GH----HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCC
T ss_pred HH----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCC
Confidence 22 12333333221 11 11111111122233344567888999999764 566777888877664
No 346
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.57 E-value=0.00016 Score=76.74 Aligned_cols=111 Identities=13% Similarity=0.107 Sum_probs=65.5
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC----CcHHHHHHHH-hhCCC-CcE
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT----RCAHIENFLR-REKPH-KHL 277 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s----~~~~le~~L~-~~~~~-k~~ 277 (534)
+.....+.||||..+ +...+...+..+|++|+|+||.+.... ......+++. ....+ .++
T Consensus 82 ~~~~~~iiDtpG~~~--------------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~i 147 (435)
T 1jny_A 82 KKYFFTIIDAPGHRD--------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQL 147 (435)
T ss_dssp SSCEEEECCCSSSTT--------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTC
T ss_pred CCeEEEEEECCCcHH--------------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeE
Confidence 445678899999532 122345567899999999999974100 1112233221 11124 468
Q ss_pred EEEEeCCCCCCh----hh----HHHHHHHHhc-cC---CeEEeeeccCCCCChH------------HHHHHHHHH
Q psy6781 278 FFILNKVDLVPI----WV----TQRWVAILSK-EY---PTIAFHASMTHPFGKG------------SIINLLRQF 328 (534)
Q Consensus 278 IlVLNKiDLv~~----~~----~~~wl~~l~~-~~---p~v~f~~Sa~~~~gi~------------~Li~~L~~~ 328 (534)
|+|+||+||.+. .. .....+.+.. .+ ...++.+|+.++.|+. .|++.|..+
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~ 222 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQL 222 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTC
T ss_pred EEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhcc
Confidence 899999999872 11 1222222222 12 1457788999988875 567776654
No 347
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.57 E-value=0.00014 Score=72.62 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=39.6
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEeC-c--cEEEEeCCCccc
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLM-R--RIYLIDCPGVVY 394 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~~-~--~i~liDtPGi~~ 394 (534)
...++|+++|.+|||||||+|.|++... ....+++|..... +..+ . .+.|+||||...
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 3578999999999999999999996543 2334445543222 2222 2 356999999753
No 348
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.56 E-value=5.3e-05 Score=78.67 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=31.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCCCC------CceeeeEEEE--e--C---ccEEEEeCCCccc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVP------GETKVWQYIT--L--M---RRIYLIDCPGVVY 394 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~p------gtTk~~~~~~--~--~---~~i~liDtPGi~~ 394 (534)
..++|+++|.+|+|||||+|+|.+......+..+ +.|....... + . ..+.++||||+..
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 4588999999999999999999886554433322 1232221111 1 1 2589999999953
No 349
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.55 E-value=0.00029 Score=79.32 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=49.4
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||..+ +..+....+..+|.+|+|+|+..........+.+.+.. .+.|+++|+||+
T Consensus 76 ~~~i~liDTPG~~d--------------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKi 139 (691)
T 1dar_A 76 DHRINIIDTPGHVD--------------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKM 139 (691)
T ss_dssp TEEEEEECCCSSTT--------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECT
T ss_pred CeEEEEEECcCccc--------------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECC
Confidence 44677899999642 12344567788999999999998765444444444443 479999999999
Q ss_pred CCCCh
Q psy6781 285 DLVPI 289 (534)
Q Consensus 285 DLv~~ 289 (534)
|+...
T Consensus 140 D~~~~ 144 (691)
T 1dar_A 140 DKTGA 144 (691)
T ss_dssp TSTTC
T ss_pred CcccC
Confidence 99753
No 350
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.53 E-value=0.00094 Score=62.11 Aligned_cols=121 Identities=15% Similarity=0.065 Sum_probs=72.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||........-. ...-+.......+....+|.+++|+|+..+.......+.+++.. .+.|.++|.||+|+
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEM-KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADK 149 (210)
T ss_dssp TEEEEECCCCC------CC-HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGG
T ss_pred CEEEEECcCCcccccCHHH-HHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccC
Confidence 4567899997432100000 00011222333334468899999999998765433345555543 47899999999999
Q ss_pred CChhhH----HHHHHHHhccC-CeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 287 VPIWVT----QRWVAILSKEY-PTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 287 v~~~~~----~~wl~~l~~~~-p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
.+.... ....+.+.+.. ....+.+|+.++.|++.|++.|.++..
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 875422 22222232221 245678899999999999999987654
No 351
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.53 E-value=4.1e-05 Score=78.74 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=28.3
Q ss_pred ccceEEEEEecCCCchhHHHHhhh------CCCceeeCCCCCcee
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALR------NKKVCKTAPVPGETK 373 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~------~~~~~~v~~~pgtTk 373 (534)
.....|+++|.||+|||||+|.|. +.+++.++.-|++|.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence 356789999999999999999996 455555555555543
No 352
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.53 E-value=0.00015 Score=78.82 Aligned_cols=108 Identities=16% Similarity=0.105 Sum_probs=65.2
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.|+||...... +. ...+..+|++|+|+|+..+ .....+...+....+++|+|+|+||+|
T Consensus 98 ~~~~i~Dt~G~e~~~~-------~~-------~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~D 161 (535)
T 3dpu_A 98 CLFHFWDFGGQEIMHA-------SH-------QFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKID 161 (535)
T ss_dssp CEEEEECCCSCCTTTT-------TC-------HHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTT
T ss_pred EEEEEEECCcHHHHHH-------HH-------HHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 3567889999432111 11 1235579999999999864 222344445554445799999999999
Q ss_pred CCChhh--HHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh
Q psy6781 286 LVPIWV--TQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK 330 (534)
Q Consensus 286 Lv~~~~--~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~ 330 (534)
+.+... .....+.+.. ....+|.+||.++.|+++|++.|.+.+.
T Consensus 162 l~~~~~v~~~~~~~~~~~-~~~~~~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 162 ENPSYNIEQKKINERFPA-IENRFHRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp TCTTCCCCHHHHHHHCGG-GTTCEEECCC-----CTTHHHHHHHHHT
T ss_pred cccccccCHHHHHHHHHh-cCCceEEEecCcccCHHHHHHHHHHHHh
Confidence 976432 2222222222 2233678899999999999999887654
No 353
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.53 E-value=0.00029 Score=76.96 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=48.1
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
.....+.||||..+-. .+++..+..+|.+|+|+|+.++.......+.+++. ..+.|+|+|+||+
T Consensus 81 ~~~i~liDTPG~~df~--------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~--~~~ipiivviNK~ 144 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFS--------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--LRDTPILTFMNKL 144 (529)
T ss_dssp TEEEEEECCCCSTTCC--------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHT--TTTCCEEEEEECT
T ss_pred CeEEEEEECCCChhHH--------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHH--HcCCCEEEEEcCc
Confidence 4456789999964311 23456778999999999999875433333333332 3578999999999
Q ss_pred CCCCh
Q psy6781 285 DLVPI 289 (534)
Q Consensus 285 DLv~~ 289 (534)
|+...
T Consensus 145 Dl~~~ 149 (529)
T 2h5e_A 145 DRDIR 149 (529)
T ss_dssp TSCCS
T ss_pred CCccc
Confidence 99754
No 354
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.51 E-value=0.00026 Score=79.33 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=70.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc-----eee------CC------CCCceeeeEEEE---eCccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV-----CKT------AP------VPGETKVWQYIT---LMRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~-----~~v------~~------~pgtTk~~~~~~---~~~~i~liDtPGi~~p 395 (534)
...+|+++|.+|+|||||+++|++... ..+ .+ ..|.|...+... ....+.|+||||...-
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 467899999999999999999984211 011 11 124444333322 2457899999997532
Q ss_pred CCCCcchHHHHHcccccc----c---cCCCchhhHHHHHHhhccceeeehcCCCCCCCHHHHHHHHHHHhC
Q psy6781 396 MTNVETDTEKVLRGVVRV----E---NIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFKWG 459 (534)
Q Consensus 396 ~~~~~~~~e~vL~gvv~v----~---~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~d~~efLe~la~k~g 459 (534)
. ......+..+..+ + .+......+...+.....+.+...||+|......+.++.++...+
T Consensus 88 ~----~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 88 V----GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGDYYALLEDLRSTLG 154 (665)
T ss_dssp H----HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGCCCHHHHHHHHHHHHC
T ss_pred H----HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchhhhHHHHHHHHHHHhC
Confidence 1 1233333322111 1 111112233344455566778889999865566788888888766
No 355
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.49 E-value=0.00012 Score=75.67 Aligned_cols=36 Identities=39% Similarity=0.547 Sum_probs=25.6
Q ss_pred cceEEEEEecCCCchhHHHHhhh------CCCceeeCCCCCc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALR------NKKVCKTAPVPGE 371 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~------~~~~~~v~~~pgt 371 (534)
....|+++|.||||||||+|.|. +.+++.+..-|+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~ 119 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSS 119 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 56789999999999999999996 4444444444433
No 356
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.47 E-value=9.4e-05 Score=81.17 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=53.2
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHH--HHHHHHHHhhhcCEEEEEEeCCCCCCC-CcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKR--IWGELYKVIDSSDVVVYVLDVRDPMGT-RCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr--~~~el~kvI~nsDvVL~VvDAR~Pl~s-~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
+..+.||||+.......+ ++. +...+...+..+|+||+|+|+..+... ....+.+.+. ..+.++++|+||
T Consensus 155 ~l~lIDTPG~~~~~~~~~-----~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~--~~~~pvilVlNK 227 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRV-----SRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR--GHEDKIRVVLNK 227 (550)
T ss_dssp HCEEEECCCBCC------------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT--TCGGGEEEEEEC
T ss_pred CEEEEECcCCCCcchhHH-----HHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH--hcCCCEEEEEEC
Confidence 678999999875322111 111 223455677899999999999875222 2222323332 245789999999
Q ss_pred CCCCChhhHHHHHHHH
Q psy6781 284 VDLVPIWVTQRWVAIL 299 (534)
Q Consensus 284 iDLv~~~~~~~wl~~l 299 (534)
+|+++...+......+
T Consensus 228 ~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 228 ADMVETQQLMRVYGAL 243 (550)
T ss_dssp GGGSCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHh
Confidence 9999876655554444
No 357
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.46 E-value=9.9e-05 Score=79.03 Aligned_cols=102 Identities=15% Similarity=-0.024 Sum_probs=59.9
Q ss_pred cccCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCC-------CcHHHHHHHHhhCCC
Q psy6781 202 KEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT-------RCAHIENFLRREKPH 274 (534)
Q Consensus 202 ~~~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s-------~~~~le~~L~~~~~~ 274 (534)
..+..+..+.||||..+ +...+...+..+|++|+|+||+++... .......++.. .+
T Consensus 81 ~~~~~~~~iiDtPGh~~--------------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~ 144 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRD--------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LG 144 (458)
T ss_dssp ECSSEEEEEEECCCCTT--------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TT
T ss_pred ecCCceEEEEECCCcHH--------------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cC
Confidence 33456788999999421 223455667899999999999865311 11111112222 35
Q ss_pred Cc-EEEEEeCCCCCC--hhhHH----HHHHHHhc-cCC---eEEeeeccCCCCChH
Q psy6781 275 KH-LFFILNKVDLVP--IWVTQ----RWVAILSK-EYP---TIAFHASMTHPFGKG 319 (534)
Q Consensus 275 k~-~IlVLNKiDLv~--~~~~~----~wl~~l~~-~~p---~v~f~~Sa~~~~gi~ 319 (534)
.| +|+|+||+||++ ..... ...+++.. .+. ..++.+||+++.|+.
T Consensus 145 v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 145 VRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp CCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred CCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence 55 889999999984 32221 12222222 121 346788999888865
No 358
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.45 E-value=9.8e-05 Score=77.61 Aligned_cols=59 Identities=24% Similarity=0.415 Sum_probs=41.1
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCce--eeCCCCCceeeeEEE--Ee------------------------CccEEE
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKVC--KTAPVPGETKVWQYI--TL------------------------MRRIYL 386 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~~--~v~~~pgtTk~~~~~--~~------------------------~~~i~l 386 (534)
+..++|+++|.+|+|||||+|+|++.... .....+|.|.+..+. .+ ...+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 35689999999999999999999975432 222346777643221 11 146899
Q ss_pred EeCCCcc
Q psy6781 387 IDCPGVV 393 (534)
Q Consensus 387 iDtPGi~ 393 (534)
+||||..
T Consensus 88 iDtPGh~ 94 (410)
T 1kk1_A 88 IDAPGHE 94 (410)
T ss_dssp EECSSHH
T ss_pred EECCChH
Confidence 9999963
No 359
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.45 E-value=0.00022 Score=72.12 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=62.5
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcH-HHHHHHH---hhCCCCcEEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA-HIENFLR---REKPHKHLFFIL 281 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~-~le~~L~---~~~~~k~~IlVL 281 (534)
....+.|+||... +. ...+.......+.++|++|+|+|+.++....+. .+.+++. ...+++|+++|+
T Consensus 52 ~~l~i~Dt~G~~~-----~~----~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 52 MTLNLWDCGGQDV-----FM----ENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp EEEEEEEECCSHH-----HH----HHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEEEECCCcHH-----Hh----hhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3456789999531 10 000011233456799999999999987544321 1122222 234689999999
Q ss_pred eCCCCCChhhH-------HHHHHHHhccCC---eEEeeeccCCCCChHHHHH
Q psy6781 282 NKVDLVPIWVT-------QRWVAILSKEYP---TIAFHASMTHPFGKGSIIN 323 (534)
Q Consensus 282 NKiDLv~~~~~-------~~wl~~l~~~~p---~v~f~~Sa~~~~gi~~Li~ 323 (534)
||+||.+.... ...+..+.+.+. ...|.+|+.+ .++.+++.
T Consensus 123 NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~ 173 (307)
T 3r7w_A 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWS 173 (307)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHH
T ss_pred ecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHH
Confidence 99999884322 133334444432 4567788887 45444433
No 360
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.42 E-value=0.00017 Score=69.44 Aligned_cols=140 Identities=18% Similarity=0.160 Sum_probs=70.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeeeEEEEeCc---cEEEEeCCCcccCCCCCcchHHHHHccc-
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVWQYITLMR---RIYLIDCPGVVYDMTNVETDTEKVLRGV- 410 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~~~~~~~~---~i~liDtPGi~~p~~~~~~~~e~vL~gv- 410 (534)
+.++|+|+|.+||||||||+.++.... ....+..|.......+..+. .+.|+||+|-..-. .......+++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----~l~~~~~~~a~ 87 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----SLIPSYIRDSA 87 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG----GGHHHHHTTCS
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh----hHHHHHhcccc
Confidence 368999999999999999999986432 11122223222222222332 57899999964221 2233333332
Q ss_pred --cccccCCCc------hhhHHHHHHhhc--cceeeehcCCCCCCC---HHHHHHHHHHHhCCcc-----ccCcchHHHH
Q psy6781 411 --VRVENIDDP------VQYIDAVLERIK--KVHLVKTYGIDEWED---TEDFLKKLAFKWGKIK-----KKGEPVITAS 472 (534)
Q Consensus 411 --v~v~~i~~~------~~~i~~iL~r~~--k~~l~~~ykId~~~d---~~efLe~la~k~g~l~-----kgG~pD~~~a 472 (534)
+-+..+.++ ..++..+..... .+.+++-||+|.... ..+-.+.+|+..|..- +.| -+++.+
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg-~nV~e~ 166 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG-YNVKQL 166 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT-BSHHHH
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC-cCHHHH
Confidence 222222332 223333333322 345677899986431 2233567788777421 223 355555
Q ss_pred HHHHHHHH
Q psy6781 473 AKMVLNDW 480 (534)
Q Consensus 473 A~~vL~d~ 480 (534)
-..+...+
T Consensus 167 F~~i~~~i 174 (216)
T 4dkx_A 167 FRRVAAAL 174 (216)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 55555443
No 361
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.41 E-value=0.00014 Score=70.09 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=57.8
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---H-hhCCCCcEEEEEeCCCCCCh-----hhHHHHHHHHhccCCeEEeee
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---R-REKPHKHLFFILNKVDLVPI-----WVTQRWVAILSKEYPTIAFHA 310 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~-~~~~~k~~IlVLNKiDLv~~-----~~~~~wl~~l~~~~p~v~f~~ 310 (534)
.+.++|++|+|.|..++.+..+ +..++ . ...++.|+|||.||+||... .....|.+.+ ....|.+
T Consensus 82 ~~~~a~~~ilv~di~~~~Sf~~--i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~----~~~~~e~ 155 (216)
T 4dkx_A 82 YIRDSAAAVVVYDITNVNSFQQ--TTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL----NVMFIET 155 (216)
T ss_dssp HHTTCSEEEEEEETTCHHHHHT--HHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEEEE
T ss_pred HhccccEEEEEeecchhHHHHH--HHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHh----CCeeEEE
Confidence 4569999999999987755432 33332 2 23467899999999999653 2333343333 3345778
Q ss_pred ccCCCCChHHHHHHHHHHh
Q psy6781 311 SMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 311 Sa~~~~gi~~Li~~L~~~~ 329 (534)
||+++.|++++.+.|.+.+
T Consensus 156 SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC
T ss_pred eCCCCcCHHHHHHHHHHHH
Confidence 9999999999988776543
No 362
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.41 E-value=0.00012 Score=81.22 Aligned_cols=121 Identities=18% Similarity=0.084 Sum_probs=63.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce--------e------eCCCCCceeeeE---EEEe--C---ccEEEEeCCCcc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC--------K------TAPVPGETKVWQ---YITL--M---RRIYLIDCPGVV 393 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~--------~------v~~~pgtTk~~~---~~~~--~---~~i~liDtPGi~ 393 (534)
...+|+++|.+|+|||||+++|+..... . .....|.|.... +... + ..+.|+||||..
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3568999999999999999999752110 0 011245554321 1111 1 367899999986
Q ss_pred cCCCCCcchHHHHHcccccc-------ccCCCchhhHHHHHHhhccceeeehcCCCCCC-CHHHHHHHHHHHhCC
Q psy6781 394 YDMTNVETDTEKVLRGVVRV-------ENIDDPVQYIDAVLERIKKVHLVKTYGIDEWE-DTEDFLKKLAFKWGK 460 (534)
Q Consensus 394 ~p~~~~~~~~e~vL~gvv~v-------~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~~-d~~efLe~la~k~g~ 460 (534)
.-. ......+..+..+ +.+..........+.....+.+...||+|... +.++.++.++...|.
T Consensus 85 dF~----~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 85 DFS----YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGL 155 (600)
T ss_dssp GGH----HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCC
T ss_pred hHH----HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCC
Confidence 422 1233333332111 11111111112223344566888999999754 566777888877664
No 363
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.40 E-value=0.00014 Score=76.44 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=27.8
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCce--eeCCCCCceeee
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVC--KTAPVPGETKVW 375 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~--~v~~~pgtTk~~ 375 (534)
..++|+++|.+|+|||||+|+|++.... .....+|.|.+.
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~ 48 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRL 48 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEe
Confidence 5689999999999999999999975432 223346777643
No 364
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.39 E-value=2.9e-05 Score=83.19 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
..++|+++|.+|+|||||+|+|++.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999853
No 365
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.39 E-value=0.00056 Score=74.99 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=52.1
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+-++||||..+- ..++..++.-+|-+|+|+||.......-..+.+++.. .+.|+|+++||+
T Consensus 99 ~~~iNlIDTPGHvDF--------------~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~ 162 (548)
T 3vqt_A 99 DRVVNLLDTPGHQDF--------------SEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKM 162 (548)
T ss_dssp TEEEEEECCCCGGGC--------------SHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECT
T ss_pred CEEEEEEeCCCcHHH--------------HHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecc
Confidence 345567999996432 2477888999999999999987766555556666554 589999999999
Q ss_pred CCCC
Q psy6781 285 DLVP 288 (534)
Q Consensus 285 DLv~ 288 (534)
|...
T Consensus 163 Dr~~ 166 (548)
T 3vqt_A 163 DREA 166 (548)
T ss_dssp TSCC
T ss_pred cchh
Confidence 9854
No 366
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.38 E-value=0.00013 Score=79.34 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=66.9
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
....+.||||...-...+ ...+..+|++|+|+|+.++..........++.. .+.|+|+|+||+|
T Consensus 51 ~~i~~iDTPGhe~f~~~~--------------~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiD 114 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMR--------------ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKID 114 (501)
T ss_dssp SCCCEECCCTTTCCTTSB--------------CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSS
T ss_pred EEEEEEECCCcHHHHHHH--------------HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEecc
Confidence 356789999964322211 123568999999999988655443333344433 5789999999999
Q ss_pred CCChh--hHHHHHH---HHhccCC--eEEeeeccCCCCChHHHHHHHHH
Q psy6781 286 LVPIW--VTQRWVA---ILSKEYP--TIAFHASMTHPFGKGSIINLLRQ 327 (534)
Q Consensus 286 Lv~~~--~~~~wl~---~l~~~~p--~v~f~~Sa~~~~gi~~Li~~L~~ 327 (534)
+.+.. .....+. .+.+.+. ..+|.+|++++.|+++|++.|..
T Consensus 115 l~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 115 KPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred ccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 97421 1111100 0111111 35788999999999999988864
No 367
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.36 E-value=0.00061 Score=76.34 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=45.6
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
...+.||||..+ + ..++...+..+|.+++|+|+..........+.+.+.. .+.|+|+|+||+|+
T Consensus 75 ~~nliDTpG~~~-----f---------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 75 RVFLLDAPGYGD-----F---------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDK 138 (665)
T ss_dssp EEEEEECCCSGG-----G---------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGG
T ss_pred EEEEEeCCCccc-----h---------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCch
Confidence 455789999532 1 1345667789999999999887655433344444433 47999999999999
Q ss_pred C
Q psy6781 287 V 287 (534)
Q Consensus 287 v 287 (534)
.
T Consensus 139 ~ 139 (665)
T 2dy1_A 139 G 139 (665)
T ss_dssp C
T ss_pred h
Confidence 7
No 368
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.36 E-value=0.00068 Score=76.47 Aligned_cols=68 Identities=16% Similarity=0.038 Sum_probs=47.4
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
..+.+.||||..+ +..++...+..+|.+|+|+|+.+........+.+++. ..+.|+++|+||+|
T Consensus 82 ~~i~liDTPG~~d--------------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~--~~~ip~ilviNKiD 145 (704)
T 2rdo_7 82 HRINIIDTPGHVD--------------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN--KYKVPRIAFVNKMD 145 (704)
T ss_pred eeEEEEeCCCccc--------------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHH--HcCCCEEEEEeCCC
Confidence 4567899999532 1234556778899999999999765443333333333 25799999999999
Q ss_pred CCCh
Q psy6781 286 LVPI 289 (534)
Q Consensus 286 Lv~~ 289 (534)
+...
T Consensus 146 ~~~~ 149 (704)
T 2rdo_7 146 RMGA 149 (704)
T ss_pred cccc
Confidence 9653
No 369
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.35 E-value=0.0001 Score=79.03 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.4
Q ss_pred ccceEEEEEecCCCchhHHHHhhhC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
+..++|+++|.+|+|||||+|+|+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4578999999999999999999963
No 370
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.34 E-value=0.00025 Score=81.63 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
...+|+|+|.+|+|||||+|+|+..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999864
No 371
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.33 E-value=0.00013 Score=72.77 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=35.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeC-------CCCCceeee------EEEEeCccEEEEeCCCcccC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTA-------PVPGETKVW------QYITLMRRIYLIDCPGVVYD 395 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~-------~~pgtTk~~------~~~~~~~~i~liDtPGi~~p 395 (534)
.++++++|.+|+|||||||+|++......+ +++.++... |...+...+.++|+||+...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 368999999999999999999985432222 223322211 12223347899999998753
No 372
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.32 E-value=0.00036 Score=71.78 Aligned_cols=102 Identities=15% Similarity=0.004 Sum_probs=61.2
Q ss_pred cCceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeC
Q psy6781 204 EKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNK 283 (534)
Q Consensus 204 ~r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNK 283 (534)
...+.++.||+|++.+.. .+.+++|++++|+|+..+... ..+.+.+. ..+.++|+||
T Consensus 146 ~~~~~iliDT~Gi~~~~~-----------------~v~~~~d~vl~v~d~~~~~~~--~~i~~~i~----~~~~ivvlNK 202 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET-----------------AVADLTDFFLVLMLPGAGDEL--QGIKKGIF----ELADMIAVNK 202 (337)
T ss_dssp TTCCEEEEEECSSSSCHH-----------------HHHTTSSEEEEEECSCC--------CCTTHH----HHCSEEEEEC
T ss_pred CCCCEEEEECCCCCcchh-----------------hHHhhCCEEEEEEcCCCcccH--HHHHHHHh----ccccEEEEEc
Confidence 355789999999875311 235799999999998533110 01111111 1345888899
Q ss_pred CCCCCh-hhHHHHHHHHhc----c-------CCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 284 VDLVPI-WVTQRWVAILSK----E-------YPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 284 iDLv~~-~~~~~wl~~l~~----~-------~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
+|+.+. .....+.+.+.. . .|. ++.+|+.++.|++.|.+.|.++.
T Consensus 203 ~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~-vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 203 ADDGDGERRASAAASEYRAALHILTPPSATWTPP-VVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCC-EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hhccCchhHHHHHHHHHHHHHHhccccccCCCCC-EEEEeCCCCCCHHHHHHHHHHHH
Confidence 998753 222222222211 1 233 45589999999999999998754
No 373
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.32 E-value=0.00078 Score=73.85 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=77.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC--c-------------eeeC------CCCCceee---eEEEEeCccEEEEeCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK--V-------------CKTA------PVPGETKV---WQYITLMRRIYLIDCPG 391 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~--~-------------~~v~------~~pgtTk~---~~~~~~~~~i~liDtPG 391 (534)
+..+|+|||..++|||||.-+|+-.. + ..+. ...|.|.. ..+.+-+..|.||||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 46789999999999999999996210 0 0111 12344422 23333456899999999
Q ss_pred cccCCCCCcchHHHHHccccc-------cccCCCchhhHHHHHHhhccceeeehcCCCCC-CCHHHHHHHHHHHhCC
Q psy6781 392 VVYDMTNVETDTEKVLRGVVR-------VENIDDPVQYIDAVLERIKKVHLVKTYGIDEW-EDTEDFLKKLAFKWGK 460 (534)
Q Consensus 392 i~~p~~~~~~~~e~vL~gvv~-------v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~-~d~~efLe~la~k~g~ 460 (534)
-..=. .+.+.+|+.+.. ++.+......+...+.+...+.+..+||+|.. .++.+.++.+..+.|.
T Consensus 110 HvDF~----~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~ 182 (548)
T 3vqt_A 110 HQDFS----EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQI 182 (548)
T ss_dssp GGGCS----HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTS
T ss_pred cHHHH----HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCC
Confidence 87544 345556554332 23343334556667777778889999999975 4788889988887763
No 374
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.32 E-value=0.00012 Score=86.14 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=56.0
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCCc---------------eeeCCCCCceeeeEEEE---eCccEEEEeCCCcccCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKKV---------------CKTAPVPGETKVWQYIT---LMRRIYLIDCPGVVYDM 396 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~~---------------~~v~~~pgtTk~~~~~~---~~~~i~liDtPGi~~p~ 396 (534)
+..++|+++|.+|+|||||+|+|++... ......+|.|.+...+. ....+.|+||||...-.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 4578999999999999999999986310 01123456665432222 24579999999974211
Q ss_pred C---CCcchHHHHHccccccccCCC-chhhHHHHHHhhccc-eeeehcCCCCCCC
Q psy6781 397 T---NVETDTEKVLRGVVRVENIDD-PVQYIDAVLERIKKV-HLVKTYGIDEWED 446 (534)
Q Consensus 397 ~---~~~~~~e~vL~gvv~v~~i~~-~~~~i~~iL~r~~k~-~l~~~ykId~~~d 446 (534)
. .....++.++..+...+.... -.+++ .++.....+ .+...||+|...+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL-~ll~~lgIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHI-LLGRQVGVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHH-HHHHHHTCSCEEEEEECCTTCCC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHH-HHHHHcCCCeEEEEEeecccccc
Confidence 0 000011111111111111111 12333 344445555 5778999998754
No 375
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.26 E-value=0.00035 Score=71.99 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=51.8
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh-hCCCCcEEEEEeCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR-EKPHKHLFFILNKVD 285 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~-~~~~k~~IlVLNKiD 285 (534)
...+.||||+........ .......+...+...+.++|+||+|+|+....... .....++.. ...+++.|+|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q-~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQ-SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTTC-CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCCC-chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567899999876421100 01234555566777899999999999864322221 233334433 234789999999999
Q ss_pred CCChh
Q psy6781 286 LVPIW 290 (534)
Q Consensus 286 Lv~~~ 290 (534)
+++..
T Consensus 215 l~~~~ 219 (360)
T 3t34_A 215 LMDKG 219 (360)
T ss_dssp GCCTT
T ss_pred cCCCc
Confidence 98653
No 376
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.24 E-value=0.00061 Score=72.23 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=37.6
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCceeeCC----CCCceeeeEEEEe--CccEEEEeCCCcccC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAP----VPGETKVWQYITL--MRRIYLIDCPGVVYD 395 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~----~pgtTk~~~~~~~--~~~i~liDtPGi~~p 395 (534)
....++|+|.+|+|||||||+|.|......+. -..+|+....... ...+.++|+||+..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch
Confidence 45578999999999999999999943211111 1112332222221 247899999999754
No 377
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.23 E-value=8.5e-05 Score=70.10 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=28.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC-----CceeeCCCCCce
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK-----KVCKTAPVPGET 372 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~-----~~~~v~~~pgtT 372 (534)
....|+++|.+|||||||+|.|.+. +++.+..-+++|
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK 70 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc
Confidence 4578999999999999999999864 344455555543
No 378
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.18 E-value=0.0001 Score=78.20 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=35.1
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCCC--ce----------------------------eeCCCCCceeeeEEEE---eC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNKK--VC----------------------------KTAPVPGETKVWQYIT---LM 381 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~~--~~----------------------------~v~~~pgtTk~~~~~~---~~ 381 (534)
+..++|+++|.+|+|||||+|+|+... .. .....+|+|.+..+.. ..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 356899999999999999999998531 00 0111467776543322 24
Q ss_pred ccEEEEeCCCcc
Q psy6781 382 RRIYLIDCPGVV 393 (534)
Q Consensus 382 ~~i~liDtPGi~ 393 (534)
..+.|+||||..
T Consensus 84 ~~~~iiDtpG~~ 95 (435)
T 1jny_A 84 YFFTIIDAPGHR 95 (435)
T ss_dssp CEEEECCCSSST
T ss_pred eEEEEEECCCcH
Confidence 579999999964
No 379
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.18 E-value=0.00023 Score=71.97 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeCCCCC------ceeeeE---EE----EeCccEEEEeCCCcc
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG------ETKVWQ---YI----TLMRRIYLIDCPGVV 393 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pg------tTk~~~---~~----~~~~~i~liDtPGi~ 393 (534)
.++|+++|.+|||||||||+|.+......+.++. .|.... +. .....+.++||||+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 5789999999999999999998863333322221 111111 11 122468999999984
No 380
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.16 E-value=0.0002 Score=76.12 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=33.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCceeeC--C----CCCceeeeEEEE-------eCccEEEEeCCCcccC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKVCKTA--P----VPGETKVWQYIT-------LMRRIYLIDCPGVVYD 395 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~~~v~--~----~pgtTk~~~~~~-------~~~~i~liDtPGi~~p 395 (534)
.++|+|+|.+|||||||||+|++......+ . .+.++. ...+. +...+.++||||+...
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~-~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ-VEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE-EEEEECC------CEEEEEEECC-----
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee-eeeEEEEEecCCcccceeeeechhhhhh
Confidence 478899999999999999999986542211 0 011221 11111 1236789999998643
No 381
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.15 E-value=0.0002 Score=75.45 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=23.7
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDP 256 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~P 256 (534)
+..+.||||+..... ..+.+.++....+.++|+|++|+|+.++
T Consensus 72 ~i~lvDtpG~~~~a~-------~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 72 PVKMVDVAGLVPGAH-------EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEECC----------------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEECCCcccchh-------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 567899999753211 1223444555667899999999999875
No 382
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.13 E-value=0.001 Score=62.27 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=44.5
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCC-CCCCCCc--HHHHHHHHh----hCCCCcEEE
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVR-DPMGTRC--AHIENFLRR----EKPHKHLFF 279 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR-~Pl~s~~--~~le~~L~~----~~~~k~~Il 279 (534)
...+.||||..... ..+..-+...+..+|++|+|+|+. ++..... ..+.+++.. ...+.|+++
T Consensus 56 ~~~l~Dt~G~~~~~----------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 125 (218)
T 1nrj_B 56 GVTLVDFPGHVKLR----------YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 125 (218)
T ss_dssp SCEEEECCCCGGGT----------HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEE
T ss_pred eEEEEECCCcHHHH----------HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEE
Confidence 45688999963211 111112222344589999999998 5544321 222233321 125799999
Q ss_pred EEeCCCCCChhh
Q psy6781 280 ILNKVDLVPIWV 291 (534)
Q Consensus 280 VLNKiDLv~~~~ 291 (534)
|+||+||.+...
T Consensus 126 v~nK~Dl~~~~~ 137 (218)
T 1nrj_B 126 ACNKSELFTARP 137 (218)
T ss_dssp EEECTTSTTCCC
T ss_pred EEEchHhcccCC
Confidence 999999986543
No 383
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.08 E-value=0.00046 Score=73.50 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=38.2
Q ss_pred eEEEEEecCCCchhHHHHhhhCCCcee---eCCCCCceeeeEE-EE----eCccEEEEeCCCcccC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNKKVCK---TAPVPGETKVWQY-IT----LMRRIYLIDCPGVVYD 395 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~~~~~---v~~~pgtTk~~~~-~~----~~~~i~liDtPGi~~p 395 (534)
++++|+|.+|+|||||||+|.|..... ....|+.+..... +. +...+.++|+||+...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 459999999999999999999975321 1223565544221 11 1236889999998653
No 384
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.05 E-value=0.00064 Score=72.13 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=71.4
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCC-CCCCCCcHHHHHHHHhh---CCCCcEEEEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVR-DPMGTRCAHIENFLRRE---KPHKHLFFIL 281 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR-~Pl~s~~~~le~~L~~~---~~~k~~IlVL 281 (534)
....+.|+||+....... .++.. ...+.++.+|.+|+|+|+. .|+.... .+.+.+... -.++|.|+|+
T Consensus 205 ~~~~l~DtpGli~~a~~~---~~L~~----~fl~~~era~~lL~vvDls~~~~~~ls-~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEG---KGLGL----EFLRHIARTRVLLYVLDAADEPLKTLE-TLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp CEEEEEECCCCCCCGGGS---CCSCH----HHHHHHTSSSEEEEEEETTSCHHHHHH-HHHHHHHHHCHHHHHSCEEEEE
T ss_pred ceEEEEeccccccchhhh---hhhhH----HHHHHHHHHHhhhEEeCCccCCHHHHH-HHHHHHHHHhHHhhcCCEEEEE
Confidence 345678999975422110 01111 2234567899999999995 3322111 112211111 1258999999
Q ss_pred eCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhhh
Q psy6781 282 NKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKL 331 (534)
Q Consensus 282 NKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~~ 331 (534)
||+|+........+.+.+... ...+|.+||.++.|+++|++.|.+++..
T Consensus 277 NKlDl~~~~~~~~l~~~l~~~-g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 277 NKVDLLEEEAVKALADALARE-GLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp ECCTTSCHHHHHHHHHHHHTT-TSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ECCChhhHHHHHHHHHHHHhc-CCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 999998764444455555432 2335678999999999999999877654
No 385
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.02 E-value=0.0006 Score=65.23 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=54.9
Q ss_pred hhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh--hCCCCcEEEEEeCCCCCChhhH-HHHHHHHhccCCeEEeeeccCCCC
Q psy6781 241 IDSSDVVVYVLDVRDPMGTRC-AHIENFLRR--EKPHKHLFFILNKVDLVPIWVT-QRWVAILSKEYPTIAFHASMTHPF 316 (534)
Q Consensus 241 I~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~--~~~~k~~IlVLNKiDLv~~~~~-~~wl~~l~~~~p~v~f~~Sa~~~~ 316 (534)
...+|.+|+|.|..++.+... ..+...+.. ...++|+|||.||+||...... ......+...+....|.+||+++.
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 456899999999876533221 111122322 1247899999999999643211 111112222223346778999999
Q ss_pred ChHHHHHHHHHHhh
Q psy6781 317 GKGSIINLLRQFSK 330 (534)
Q Consensus 317 gi~~Li~~L~~~~~ 330 (534)
|+++|.+.|.+.+.
T Consensus 189 ~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 189 NVKELFEGIVRQVR 202 (211)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988876543
No 386
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.00083 Score=61.49 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=48.4
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCC-CCCCCCc--HHHHHHHHh----hCCCCcEE
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVR-DPMGTRC--AHIENFLRR----EKPHKHLF 278 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR-~Pl~s~~--~~le~~L~~----~~~~k~~I 278 (534)
....+.|+||....... ....+...+..+|++|+|+|+. ++..... ..+..++.. ...+.|++
T Consensus 91 ~~~~l~Dt~G~~~~~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 160 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYK----------LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 160 (193)
T ss_dssp TTCSEEEETTCCBSSCC----------HHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEE
T ss_pred CeEEEEECCCCchHHHH----------HHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEE
Confidence 34567899997543221 1122234456799999999997 3322111 112222221 12479999
Q ss_pred EEEeCCCCCChhhHHHHHHHH
Q psy6781 279 FILNKVDLVPIWVTQRWVAIL 299 (534)
Q Consensus 279 lVLNKiDLv~~~~~~~wl~~l 299 (534)
+|+||+||.+........+.+
T Consensus 161 lv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 161 IACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEECTTSTTCCCHHHHHHHH
T ss_pred EEEEchHhcCCCCHHHHHHHH
Confidence 999999998754444444333
No 387
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.98 E-value=0.00078 Score=75.12 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=52.4
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCC
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKi 284 (534)
...+-+.||||..+ +..++...+.-+|.+|+|+||..........+.+++.. .+.|+|+++||+
T Consensus 66 ~~~iNlIDTPGH~D--------------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKm 129 (638)
T 3j25_A 66 NTKVNIIDTPGHMD--------------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKI 129 (638)
T ss_dssp SCBCCCEECCCSSS--------------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEEC
T ss_pred CEEEEEEECCCcHH--------------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEecc
Confidence 44556789999643 23567788999999999999998777666666666654 478999999999
Q ss_pred CCCC
Q psy6781 285 DLVP 288 (534)
Q Consensus 285 DLv~ 288 (534)
|...
T Consensus 130 Dr~~ 133 (638)
T 3j25_A 130 DQNG 133 (638)
T ss_dssp CSSS
T ss_pred cccc
Confidence 9753
No 388
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.93 E-value=0.0013 Score=62.18 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
...+|+++|.+|||||||+|.|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999863
No 389
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.87 E-value=0.0014 Score=60.74 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=54.8
Q ss_pred hhhcCEEEEEEeCCCCCCCCc-HHHHHHHHh--hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCC
Q psy6781 241 IDSSDVVVYVLDVRDPMGTRC-AHIENFLRR--EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPF 316 (534)
Q Consensus 241 I~nsDvVL~VvDAR~Pl~s~~-~~le~~L~~--~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~ 316 (534)
...+|.+++|.|..++.+... ..+...+.. ...+.|+|+|.||+||..... .......+...+....|.+||+++.
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCC
Confidence 346899999999886543321 112222322 234789999999999964321 1111122222233345778999999
Q ss_pred ChHHHHHHHHHHh
Q psy6781 317 GKGSIINLLRQFS 329 (534)
Q Consensus 317 gi~~Li~~L~~~~ 329 (534)
|+++|.+.|.+.+
T Consensus 158 ~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 158 NVKELFEGIVRQV 170 (192)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999988886644
No 390
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.84 E-value=0.0012 Score=71.68 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=25.6
Q ss_pred cceEEEEEecCCCchhHHHHhhh------CCCceeeCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALR------NKKVCKTAP 367 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~------~~~~~~v~~ 367 (534)
....|+|+|.|||||||++|.|. +.+++.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35679999999999999999999 777665543
No 391
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.77 E-value=0.0024 Score=62.82 Aligned_cols=79 Identities=10% Similarity=0.009 Sum_probs=46.1
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHH--hhhcCEEEEEEeCCCCCCC-CcHHHHHHHHhh-CC--CCcEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKV--IDSSDVVVYVLDVRDPMGT-RCAHIENFLRRE-KP--HKHLF 278 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kv--I~nsDvVL~VvDAR~Pl~s-~~~~le~~L~~~-~~--~k~~I 278 (534)
.....+.||||+.+... ....+++.++.. ...+|++|+|+|+...-.. .+..+.+.+... .. .+|+|
T Consensus 86 ~~~l~iiDTpG~~~~~~-------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~ii 158 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGY-------INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 158 (270)
T ss_dssp TEEEEEEECCCSEETTE-------ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred CeEEEEEECCCCCCCcc-------chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEE
Confidence 34567899999754322 112233333332 2479999999887543222 122333444321 11 16899
Q ss_pred EEEeCCCCCChh
Q psy6781 279 FILNKVDLVPIW 290 (534)
Q Consensus 279 lVLNKiDLv~~~ 290 (534)
+|+||+||.++.
T Consensus 159 vV~nK~Dl~~~~ 170 (270)
T 1h65_A 159 VALTHAQFSPPD 170 (270)
T ss_dssp EEEECCSCCCGG
T ss_pred EEEECcccCCcC
Confidence 999999998754
No 392
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.75 E-value=0.00036 Score=67.65 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=29.2
Q ss_pred ccceEEEEEecCCCchhHHHHhhh-----CCCceeeCCCCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALR-----NKKVCKTAPVPG 370 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~-----~~~~~~v~~~pg 370 (534)
.....++++|.+||||||+++.|. +.+++.+..-|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 456677899999999999999998 777776665554
No 393
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.75 E-value=0.0012 Score=64.59 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=23.5
Q ss_pred ccceEEEEEecC---------CCchhHHHHhhhCC
Q psy6781 335 RKQISVGFIGYP---------NVGKSSIINALRNK 360 (534)
Q Consensus 335 ~~~~~v~vvG~p---------nvGKSSliN~L~~~ 360 (534)
...++|+++|.+ |||||||+|+|++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 356899999999 99999999999984
No 394
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.69 E-value=0.0078 Score=67.80 Aligned_cols=65 Identities=17% Similarity=0.033 Sum_probs=49.9
Q ss_pred eeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCC
Q psy6781 207 FDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDL 286 (534)
Q Consensus 207 q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDL 286 (534)
.+=++||||..+ +..|+..++.-+|-+|+||||.......-..+.+.... .+.|+|+++||+|.
T Consensus 86 ~iNlIDTPGHvD--------------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--~~lp~i~~iNKiDr 149 (709)
T 4fn5_A 86 RVNVIDTPGHVD--------------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--YGVPRIVYVNKMDR 149 (709)
T ss_dssp EEEEECCCSCTT--------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--HTCCEEEEEECSSS
T ss_pred EEEEEeCCCCcc--------------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEccccc
Confidence 345789999643 23577888999999999999987766555556665543 47999999999997
Q ss_pred C
Q psy6781 287 V 287 (534)
Q Consensus 287 v 287 (534)
.
T Consensus 150 ~ 150 (709)
T 4fn5_A 150 Q 150 (709)
T ss_dssp T
T ss_pred c
Confidence 5
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.65 E-value=0.0012 Score=62.09 Aligned_cols=82 Identities=16% Similarity=0.119 Sum_probs=53.3
Q ss_pred hcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChh--hHHHHHHHHhccCC-eEEeeeccCCCCChH
Q psy6781 243 SSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIW--VTQRWVAILSKEYP-TIAFHASMTHPFGKG 319 (534)
Q Consensus 243 nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~--~~~~wl~~l~~~~p-~v~f~~Sa~~~~gi~ 319 (534)
..+.+++|+|+..+.. .+..+... .++|.++|+||+|+.+.. ......+.+....+ ..++.+|+.++.|++
T Consensus 129 ~~~~~i~vvd~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~ 202 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDD----VVEKHPEI--FRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFE 202 (221)
T ss_dssp SCSEEEEEEEGGGCTT----HHHHCHHH--HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHH
T ss_pred ccCcEEEEEeCCCcch----hhhhhhhh--hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHH
Confidence 4578999999976521 22222221 247889999999996431 23333333333222 456788999999999
Q ss_pred HHHHHHHHHhh
Q psy6781 320 SIINLLRQFSK 330 (534)
Q Consensus 320 ~Li~~L~~~~~ 330 (534)
.|++.|.+.+.
T Consensus 203 ~l~~~l~~~~~ 213 (221)
T 2wsm_A 203 EWIDFLRGILN 213 (221)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999876543
No 396
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.52 E-value=0.0053 Score=56.82 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=56.3
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcH-HHHHHHHh-hCCCCcEEEEEeCCCCCChhh-HHHHHHHHhccCCeEEeeeccCCCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCA-HIENFLRR-EKPHKHLFFILNKVDLVPIWV-TQRWVAILSKEYPTIAFHASMTHPF 316 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~-~le~~L~~-~~~~k~~IlVLNKiDLv~~~~-~~~wl~~l~~~~p~v~f~~Sa~~~~ 316 (534)
...++|.+++|+|+.++....+. .+...+.. ...+.++++|+||+||..... .......+........+.+|++++.
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~ 153 (199)
T 2f9l_A 74 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 153 (199)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 34588999999999866432211 11122222 234688999999999964311 1111222323333456678999999
Q ss_pred ChHHHHHHHHHHhh
Q psy6781 317 GKGSIINLLRQFSK 330 (534)
Q Consensus 317 gi~~Li~~L~~~~~ 330 (534)
|++++++.|.+.+.
T Consensus 154 ~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 154 NVEEAFKNILTEIY 167 (199)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998876543
No 397
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.47 E-value=0.0025 Score=65.17 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=55.2
Q ss_pred HHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHhccCCeEEeeeccCCCCChHHHHHHHHHHhh----hhc---cc
Q psy6781 263 HIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSK----LHT---ER 335 (534)
Q Consensus 263 ~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~~~~p~v~f~~Sa~~~~gi~~Li~~L~~~~~----~~~---~~ 335 (534)
.+++|+. ...+.||++|.|++++..++.. + + +...++..+.........|..+|...+. .|. +-
T Consensus 72 rler~l~----~~~P~IIltrg~~~peelie~A-~---~-~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~ 142 (314)
T 1ko7_A 72 RMRKLCR----PETPAIIVTRDLEPPEELIEAA-K---E-HETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDV 142 (314)
T ss_dssp HHHHHCC----TTCCCEEECTTCCCCHHHHHHH-H---H-TTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEE
T ss_pred HHHHHhc----CCCCEEEEeCCCCCCHHHHHHH-H---H-CCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEE
Confidence 4566653 4667899999999876533222 1 2 2333444444443444455555543211 111 12
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCCc
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKKV 362 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~~ 362 (534)
.+..|+|+|.+|+||||+.++|.....
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~ 169 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGH 169 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCC
Confidence 467899999999999999999987543
No 398
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.45 E-value=0.0048 Score=69.53 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=69.3
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC-----ceee------------CCCCCceeeeEEEEe----------CccEEEEeC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK-----VCKT------------APVPGETKVWQYITL----------MRRIYLIDC 389 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~-----~~~v------------~~~pgtTk~~~~~~~----------~~~i~liDt 389 (534)
-.+|+|||....|||||..+|+-.. ...+ ....|.|-....+++ +-.|.||||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 4589999999999999999997311 0011 112344432222211 236899999
Q ss_pred CCcccCCCCCcchHHHHHcccc-------ccccCCCchhhHHHHHHhhccceeeehcCCCCC-CCHHHHHHHHHHHhC
Q psy6781 390 PGVVYDMTNVETDTEKVLRGVV-------RVENIDDPVQYIDAVLERIKKVHLVKTYGIDEW-EDTEDFLKKLAFKWG 459 (534)
Q Consensus 390 PGi~~p~~~~~~~~e~vL~gvv-------~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~-~d~~efLe~la~k~g 459 (534)
||-+.=. .+...+|+.+. .++.+......+...+.+..-+.+..+||+|.. .+....++.+..+.|
T Consensus 93 PGHvDF~----~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 93 PGHVDFT----IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp CSCTTCH----HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred CCCcccH----HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 9987433 34455554332 223333333455555666667778899999964 467777888877665
No 399
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.35 E-value=0.0065 Score=62.86 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=36.7
Q ss_pred cCEEEEEEeC-CCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHH---HHHHhccCCeEEeeeccCCCCC
Q psy6781 244 SDVVVYVLDV-RDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRW---VAILSKEYPTIAFHASMTHPFG 317 (534)
Q Consensus 244 sDvVL~VvDA-R~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~w---l~~l~~~~p~v~f~~Sa~~~~g 317 (534)
+|++++++|+ +.++...+. .++.....+.|+|+|+||+|+.....+..+ +..+...+...+|.+|+.++.+
T Consensus 146 v~~~vy~I~~~~~~l~~~d~---~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 146 VHCCFYFISPFGHGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp CCEEEEEECSSSSSCCHHHH---HHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred eEEEEEEEecCCCCcchhHH---HHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 3578888875 444433222 333333357899999999999886544432 2222233334456778887776
No 400
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.34 E-value=0.0022 Score=71.44 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=72.2
Q ss_pred eEEEEEecCCCchhHHHHhhhCC-----Cceee------CCC------CCceeeeE---EEEeCccEEEEeCCCcccCCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNK-----KVCKT------APV------PGETKVWQ---YITLMRRIYLIDCPGVVYDMT 397 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~-----~~~~v------~~~------pgtTk~~~---~~~~~~~i~liDtPGi~~p~~ 397 (534)
.+|+|+|....|||||..+|+-. ....+ .+. .|.|-... +.+-+..+.||||||-..=.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 36899999999999999999621 11111 111 13333211 22235679999999976432
Q ss_pred CCcchHHHHHcccc-------ccccCCCchhhHHHHHHhhccceeeehcCCCCC-CCHHHHHHHHHHHhC
Q psy6781 398 NVETDTEKVLRGVV-------RVENIDDPVQYIDAVLERIKKVHLVKTYGIDEW-EDTEDFLKKLAFKWG 459 (534)
Q Consensus 398 ~~~~~~e~vL~gvv-------~v~~i~~~~~~i~~iL~r~~k~~l~~~ykId~~-~d~~efLe~la~k~g 459 (534)
.+....|+.+. .++.+......+...+.+.+-+.+..+||+|.. .+....++.+..+.+
T Consensus 82 ---~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~ 148 (638)
T 3j25_A 82 ---AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLS 148 (638)
T ss_dssp ---HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhC
Confidence 34555555432 233343334556666667777778889999965 356677777776655
No 401
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.33 E-value=0.0024 Score=65.71 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=34.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCceeeCCCCCceeeeEE--EEeCccEEEEeCCCcc
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLMRRIYLIDCPGVV 393 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~~~~v~~~pgtTk~~~~--~~~~~~i~liDtPGi~ 393 (534)
+|.++|.+|||||||++.+.+..........+.|..... +...-.+.++||||--
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQE 57 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQL 57 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCch
Confidence 478999999999999998876532221111222322111 1122478999999964
No 402
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.23 E-value=0.015 Score=56.51 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHH---HHHHhhC--CCCcEEEEEeCC-CCCChhhHHHHHHHHh--c-
Q psy6781 232 RIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIE---NFLRREK--PHKHLFFILNKV-DLVPIWVTQRWVAILS--K- 301 (534)
Q Consensus 232 r~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le---~~L~~~~--~~k~~IlVLNKi-DLv~~~~~~~wl~~l~--~- 301 (534)
-+|+.-+ .++|.||+|||+.+..-..+ ..+. +.+..+. .+.|++|+.||. |+...-......+.|. .
T Consensus 117 plWr~Yy---~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l 193 (227)
T 3l82_B 117 PQIQKVC---EVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL 193 (227)
T ss_dssp CCHHHHH---HHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG
T ss_pred HHHHHHh---cCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC
Confidence 3565544 59999999999987632221 2232 2222221 577888889996 6743222223333321 1
Q ss_pred cCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 302 EYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 302 ~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
..+..+..+||.+|.|+.+=+++|.+.
T Consensus 194 ~R~W~Iq~csA~TGeGL~EGLdWL~~~ 220 (227)
T 3l82_B 194 NHPWLVQDTEAETLTGFLNGIEWILEE 220 (227)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHTTT
T ss_pred CCCEEEEEeECCCCcCHHHHHHHHHHH
Confidence 246778889999999998888887643
No 403
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.17 E-value=0.0071 Score=64.78 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=39.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhC-----------------CCceeeCCCCC-cee-eeEEEE-----eC----ccEEEE
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRN-----------------KKVCKTAPVPG-ETK-VWQYIT-----LM----RRIYLI 387 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~-----------------~~~~~v~~~pg-tTk-~~~~~~-----~~----~~i~li 387 (534)
...-|+|+|.+++|||+|+|.|++ ...+.+++... .|+ .|.|.. .+ ..++|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 456778999999999999997751 12344443222 233 344321 11 249999
Q ss_pred eCCCcccCC
Q psy6781 388 DCPGVVYDM 396 (534)
Q Consensus 388 DtPGi~~p~ 396 (534)
||.|+..+.
T Consensus 146 DTEG~~d~~ 154 (457)
T 4ido_A 146 DTQGTFDSQ 154 (457)
T ss_dssp EECCBTCTT
T ss_pred eccCCCCcc
Confidence 999998665
No 404
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.09 E-value=0.011 Score=57.73 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=47.0
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHh--hhcCEEEEEEeCCCCCCCC-cHHHHHHHHhh-C--CCCcEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVI--DSSDVVVYVLDVRDPMGTR-CAHIENFLRRE-K--PHKHLF 278 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI--~nsDvVL~VvDAR~Pl~s~-~~~le~~L~~~-~--~~k~~I 278 (534)
.....+.||||..+... ......+.++..+ ..+|++|+|+|+..+-... +..+.+.+... . ..+|+|
T Consensus 83 ~~~l~liDTpG~~~~~~-------~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i 155 (262)
T 3def_A 83 GFTINIIDTPGLVEAGY-------VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTL 155 (262)
T ss_dssp TEEEEEEECCCSEETTE-------ECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred CeeEEEEECCCCCCccc-------chHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEE
Confidence 34567899999764322 2233344444433 3789999998876543322 22344444431 1 125899
Q ss_pred EEEeCCCCCCh
Q psy6781 279 FILNKVDLVPI 289 (534)
Q Consensus 279 lVLNKiDLv~~ 289 (534)
+|+||+||.+.
T Consensus 156 vv~nK~Dl~~~ 166 (262)
T 3def_A 156 LVLTHAQFSPP 166 (262)
T ss_dssp EEEECTTCCCS
T ss_pred EEEeCcccCCC
Confidence 99999999754
No 405
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0025 Score=66.77 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=50.2
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHh---hCCCCcEEEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR---EKPHKHLFFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~---~~~~k~~IlVL 281 (534)
..+..+.|+||+..... .++.+.+++...+.++|+|++|+|+.+|.... ..++..|.. .-..+|.++++
T Consensus 118 ~~~i~l~D~pGl~~~a~-------~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~-~~i~~EL~~~~~~l~~k~~~i~~ 189 (376)
T 4a9a_A 118 GAKIQMLDLPGIIDGAK-------DGRGRGKQVIAVARTCNLLFIILDVNKPLHHK-QIIEKELEGVGIRLNKTPPDILI 189 (376)
T ss_dssp TEEEEEEECGGGCCC------------CHHHHHHHHHHHCSEEEEEEETTSHHHHH-HHHHHHHHHTTEEETCCCCCEEE
T ss_pred CcEEEEEeCCCccCCch-------hhhHHHHHHHHHHHhcCccccccccCccHHHH-HHHHHHHHHhhHhhccCChhhhh
Confidence 45677899999975433 23334567778899999999999999885432 233333332 11357889999
Q ss_pred eCCCCC
Q psy6781 282 NKVDLV 287 (534)
Q Consensus 282 NKiDLv 287 (534)
||+|..
T Consensus 190 nK~d~~ 195 (376)
T 4a9a_A 190 KKKEKG 195 (376)
T ss_dssp EECSSS
T ss_pred hHhhhh
Confidence 999964
No 406
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.87 E-value=0.0045 Score=65.84 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
...|+++|.|||||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 407
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.84 E-value=0.014 Score=53.89 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=54.6
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHH---Hh-hCCCCcEEEEEeCCCCCChh-hHHHHHHHHhccCCeEEeeeccCC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFL---RR-EKPHKHLFFILNKVDLVPIW-VTQRWVAILSKEYPTIAFHASMTH 314 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L---~~-~~~~k~~IlVLNKiDLv~~~-~~~~wl~~l~~~~p~v~f~~Sa~~ 314 (534)
...++|.++.|.|..++.... .+..++ .. ...+.++++|+||+||.+.. ........+........+.+|+++
T Consensus 98 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald 175 (191)
T 1oix_A 98 YYRGAVGALLVYDIAKHLTYE--NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALD 175 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HhhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 345789999999987653321 122222 22 23468899999999996421 111122223333334566789999
Q ss_pred CCChHHHHHHHHHH
Q psy6781 315 PFGKGSIINLLRQF 328 (534)
Q Consensus 315 ~~gi~~Li~~L~~~ 328 (534)
+.|++++++.|.+.
T Consensus 176 ~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 176 STNVEAAFQTILTE 189 (191)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988753
No 408
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.84 E-value=0.0037 Score=64.75 Aligned_cols=90 Identities=9% Similarity=0.122 Sum_probs=55.1
Q ss_pred HhhhcCEEEEEEeCCCCCC--------CCcHHHHHHHH---h--hCCCCcEEEEEeCCCCCC------------------
Q psy6781 240 VIDSSDVVVYVLDVRDPMG--------TRCAHIENFLR---R--EKPHKHLFFILNKVDLVP------------------ 288 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~--------s~~~~le~~L~---~--~~~~k~~IlVLNKiDLv~------------------ 288 (534)
...++|.||+|+|..+... .+-.....++. . ...+.|+|||+||+||..
T Consensus 213 yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~ 292 (353)
T 1cip_A 213 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 292 (353)
T ss_dssp GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSC
T ss_pred HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCC
Confidence 3569999999999986421 11112222222 1 235789999999999942
Q ss_pred --hhhHHHHHHH-Hhc------cCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 289 --IWVTQRWVAI-LSK------EYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 289 --~~~~~~wl~~-l~~------~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
......|+.. |.. ......+.+||+++.|+..+.+.+...+
T Consensus 293 ~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 293 NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 2233344431 111 2334566789999999998888776543
No 409
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.74 E-value=0.0082 Score=56.52 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCC
Q psy6781 319 GSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 319 ~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
..|++.|.+....+ ...+..|+|+|.+|+|||||++.|.+.
T Consensus 5 ~~~~~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 5 AALCQGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555554433322 345778999999999999999999874
No 410
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.59 E-value=0.0059 Score=63.46 Aligned_cols=90 Identities=12% Similarity=0.188 Sum_probs=52.8
Q ss_pred HhhhcCEEEEEEeCCCCC--------CCCcHHHHHHH----Hh-hCCCCcEEEEEeCCCCCCh-----------------
Q psy6781 240 VIDSSDVVVYVLDVRDPM--------GTRCAHIENFL----RR-EKPHKHLFFILNKVDLVPI----------------- 289 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl--------~s~~~~le~~L----~~-~~~~k~~IlVLNKiDLv~~----------------- 289 (534)
...++|.||+|+|..+.. ..+-.....++ .. ...+.|+|||+||+||...
T Consensus 221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~ 300 (362)
T 1zcb_A 221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD 300 (362)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCC
Confidence 346899999999998631 11111122222 21 2357899999999998521
Q ss_pred ----hhHHHHHH-HHh---c---cCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 290 ----WVTQRWVA-ILS---K---EYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 290 ----~~~~~wl~-~l~---~---~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
.....|+. .|. . ..+...+.+||+++.|+..+.+.+...+
T Consensus 301 ~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 301 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp TTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 12223321 111 1 2234456689999999998887776543
No 411
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.51 E-value=0.0048 Score=58.87 Aligned_cols=39 Identities=33% Similarity=0.353 Sum_probs=29.8
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceeee
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKVW 375 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~~ 375 (534)
+..|+|+|.+|+|||||+|.|.+... .-...++.||+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPP 58 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCC
Confidence 45678999999999999999997543 2345567777754
No 412
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.40 E-value=0.032 Score=59.57 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred cceEEEEEecCCCchhHHHHhhh
Q psy6781 336 KQISVGFIGYPNVGKSSIINALR 358 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~ 358 (534)
+...|+++|.+||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 35788999999999999999997
No 413
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.30 E-value=0.016 Score=66.64 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=46.9
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiD 285 (534)
..+.+.||||..+-. .+....+..+|.+|+|+|+.++.......+.+.+.. .+.|+|+|+||+|
T Consensus 98 ~~i~liDTPG~~df~--------------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS--------------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSC--------------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred ceEEEEECcCchhhH--------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCC
Confidence 345688999965421 234556789999999999998766544443333332 5799999999999
Q ss_pred CC
Q psy6781 286 LV 287 (534)
Q Consensus 286 Lv 287 (534)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 86
No 414
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.14 E-value=0.063 Score=54.50 Aligned_cols=96 Identities=9% Similarity=-0.024 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhhcCEEEEEEeCCCCCCCCc-HHHH---HHHHhh--CCCCcEEEEEeC-CCCCChhhHHHHHHHHh--c
Q psy6781 231 KRIWGELYKVIDSSDVVVYVLDVRDPMGTRC-AHIE---NFLRRE--KPHKHLFFILNK-VDLVPIWVTQRWVAILS--K 301 (534)
Q Consensus 231 kr~~~el~kvI~nsDvVL~VvDAR~Pl~s~~-~~le---~~L~~~--~~~k~~IlVLNK-iDLv~~~~~~~wl~~l~--~ 301 (534)
+-+|+.-+ .++|.||+|||+.|..-... ..+. +.+..+ -.+.|++|+.|| -|+...-...+..+.+. .
T Consensus 201 RplWr~Yy---~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~ 277 (312)
T 3l2o_B 201 IPQIQKVC---EVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 277 (312)
T ss_dssp CHHHHHHH---HHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred HHHHHHHh---cCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCcc
Confidence 34566655 58999999999976643221 1222 334332 257899999997 58853322223333321 1
Q ss_pred -cCCeEEeeeccCCCCChHHHHHHHHHHh
Q psy6781 302 -EYPTIAFHASMTHPFGKGSIINLLRQFS 329 (534)
Q Consensus 302 -~~p~v~f~~Sa~~~~gi~~Li~~L~~~~ 329 (534)
..+..+..+||.+|.|+.+=+++|.+.+
T Consensus 278 l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 278 LNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred CCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 2467788899999999998888887644
No 415
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.08 E-value=0.019 Score=63.49 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHhhhCCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
.|+|+|.+|+|||||+|+|.|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999863
No 416
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.99 E-value=0.007 Score=55.76 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=26.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCCc-eeeCCCCCceee
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKKV-CKTAPVPGETKV 374 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~~-~~v~~~pgtTk~ 374 (534)
+-.++|+|.+|+|||||++.|.+... .....++.+|+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~ 43 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRP 43 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCC
Confidence 34678999999999999999987432 122334444544
No 417
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.87 E-value=0.034 Score=52.16 Aligned_cols=81 Identities=11% Similarity=0.119 Sum_probs=48.9
Q ss_pred hcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChh--hHHHHHHHHhccC-CeEEeeeccCCCCChH
Q psy6781 243 SSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIW--VTQRWVAILSKEY-PTIAFHASMTHPFGKG 319 (534)
Q Consensus 243 nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~--~~~~wl~~l~~~~-p~v~f~~Sa~~~~gi~ 319 (534)
..+.++.|+|+..+....... ...+ +++.++|+||+|+.+.. ......+.+.... ...++.+|++++.|++
T Consensus 139 ~~~~~~~v~~~~~~~~~~~~~-~~~~-----~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 212 (226)
T 2hf9_A 139 GTHKRIVVISTTEGDDTIEKH-PGIM-----KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFD 212 (226)
T ss_dssp SCSEEEEEEEGGGCTTTTTTC-HHHH-----TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHH
T ss_pred ccCcEEEEEecCcchhhHhhh-hhHh-----hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHH
Confidence 346778899864332211111 1112 47889999999996532 1222223332222 2356778999999999
Q ss_pred HHHHHHHHHh
Q psy6781 320 SIINLLRQFS 329 (534)
Q Consensus 320 ~Li~~L~~~~ 329 (534)
+|.+.|.+.+
T Consensus 213 ~l~~~l~~~~ 222 (226)
T 2hf9_A 213 KVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887644
No 418
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=94.64 E-value=0.078 Score=54.50 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=50.6
Q ss_pred HhhhcCEEEEEEeCCCCCCCCcHHHHHHHH---hhCCCCcEEEEEeCCCCCChhh--------HHHHHHHHhcc----CC
Q psy6781 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFLR---REKPHKHLFFILNKVDLVPIWV--------TQRWVAILSKE----YP 304 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~Pl~s~~~~le~~L~---~~~~~k~~IlVLNKiDLv~~~~--------~~~wl~~l~~~----~p 304 (534)
...++|.+|+|+|+.+++...-..+.+++. ...++.|+++|.||+||.++.. ...-.+.+.+. +.
T Consensus 69 yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~ 148 (331)
T 3r7w_B 69 LFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ 148 (331)
T ss_dssp HHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC
T ss_pred hccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccC
Confidence 356999999999999872111122322232 2356899999999999987532 12222334443 34
Q ss_pred eEEeeeccCCCCChHHHHHHH
Q psy6781 305 TIAFHASMTHPFGKGSIINLL 325 (534)
Q Consensus 305 ~v~f~~Sa~~~~gi~~Li~~L 325 (534)
...|..||++ .++.+....+
T Consensus 149 i~f~eTSAkd-~nV~eAFs~i 168 (331)
T 3r7w_B 149 VSFYLTSIFD-HSIYEAFSRI 168 (331)
T ss_dssp EEEECCCSSS-SHHHHHHHHH
T ss_pred ceEEEeccCC-CcHHHHHHHH
Confidence 4566778876 3554443333
No 419
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.62 E-value=0.019 Score=52.49 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=22.0
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.+-.++++|.||+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3556899999999999999999875
No 420
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.40 E-value=0.038 Score=51.71 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.0
Q ss_pred ccceEEEEEecCCCchhHHHHhhhC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
..+..|+++|.+|+||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999975
No 421
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.34 E-value=0.015 Score=53.99 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
.++++|.+|+|||||++.|.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 422
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.33 E-value=0.038 Score=58.82 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.5
Q ss_pred cceEEEEEecCCCchhHHHHhhh
Q psy6781 336 KQISVGFIGYPNVGKSSIINALR 358 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~ 358 (534)
.+..|+++|.+||||||+++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999997
No 423
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.30 E-value=0.1 Score=56.52 Aligned_cols=107 Identities=20% Similarity=0.206 Sum_probs=62.0
Q ss_pred CceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHh--hhcCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcE-EEEE
Q psy6781 205 KDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVI--DSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHL-FFIL 281 (534)
Q Consensus 205 r~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI--~nsDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~-IlVL 281 (534)
....+++||||...... .++.++..+. -.+|.+++|+||..... ...+.+.+.. ..++ ++|+
T Consensus 183 ~~DvvIIDTpG~~~~~~----------~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~---~~~i~gvVl 247 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQED----------SLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD---KVDVASVIV 247 (504)
T ss_dssp TCCEEEEEECCCCTTCH----------HHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH---HHCCCCEEE
T ss_pred CCcEEEEeCCCCcccch----------hHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh---hcCceEEEE
Confidence 44578999999764321 1223332222 27899999999986432 2222233322 2564 8999
Q ss_pred eCCCCCChh-hHHHHHHHHhccCCeE----------------EeeeccCCCCC-hHHHHHHHHHH
Q psy6781 282 NKVDLVPIW-VTQRWVAILSKEYPTI----------------AFHASMTHPFG-KGSIINLLRQF 328 (534)
Q Consensus 282 NKiDLv~~~-~~~~wl~~l~~~~p~v----------------~f~~Sa~~~~g-i~~Li~~L~~~ 328 (534)
||+|..... ....+...+. .|.. .+.+|+..+.| +..|++.+.+.
T Consensus 248 NK~D~~~~~g~~l~~~~~~g--~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 248 TKLDGHAKGGGALSAVAATK--SPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ECTTSCCCCTHHHHHHHHHC--CCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eCCccccchHHHHHHHHHhC--CCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999997542 2223333321 1211 12357777888 88888888765
No 424
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.28 E-value=0.013 Score=54.98 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
+..++|+|.+|+|||||++.|.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345799999999999999999863
No 425
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.07 E-value=0.031 Score=50.93 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhCC
Q psy6781 318 KGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 318 i~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
....++.+++++.......+-.++++|.||+|||||+++|.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3445556665554333334567899999999999999998763
No 426
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.00 E-value=0.022 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
+-.++++|.+|+|||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 446799999999999999999874
No 427
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.89 E-value=0.05 Score=56.29 Aligned_cols=89 Identities=10% Similarity=0.174 Sum_probs=50.8
Q ss_pred HhhhcCEEEEEEeCC--------CCCCCCcHHHHHHHH---h--hCCCCcEEEEEeCCCCCChh----------------
Q psy6781 240 VIDSSDVVVYVLDVR--------DPMGTRCAHIENFLR---R--EKPHKHLFFILNKVDLVPIW---------------- 290 (534)
Q Consensus 240 vI~nsDvVL~VvDAR--------~Pl~s~~~~le~~L~---~--~~~~k~~IlVLNKiDLv~~~---------------- 290 (534)
...++|.+|+|+|.. ++-..+-..+..++. . ...+.|+|||+||+||....
T Consensus 203 y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~ 282 (354)
T 2xtz_A 203 LFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQ 282 (354)
T ss_dssp GCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCC
T ss_pred HhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccc
Confidence 346899999999985 111111122222222 1 23578999999999984221
Q ss_pred ----------hHHHHHH-HHhc-----------cCCeEEeeeccCCCCChHHHHHHHHHH
Q psy6781 291 ----------VTQRWVA-ILSK-----------EYPTIAFHASMTHPFGKGSIINLLRQF 328 (534)
Q Consensus 291 ----------~~~~wl~-~l~~-----------~~p~v~f~~Sa~~~~gi~~Li~~L~~~ 328 (534)
....|+. .|.. ......+..||+++.|+..+.+.+...
T Consensus 283 ~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~ 342 (354)
T 2xtz_A 283 PVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDET 342 (354)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHH
Confidence 1122211 1110 112234678999999998887777653
No 428
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.77 E-value=0.027 Score=53.09 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
.+.-|+|+|.+|+|||||++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35568899999999999999998754
No 429
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.51 E-value=0.028 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.+-.++++|.+|+|||||++.|.+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3446789999999999999999874
No 430
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.48 E-value=0.034 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.+..|+++|.+|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999874
No 431
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.37 E-value=0.11 Score=52.26 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=44.1
Q ss_pred cCEEEEEEeCCCCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHH---HHHHHHhccCCeEEeeeccCCCCChHH
Q psy6781 244 SDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQ---RWVAILSKEYPTIAFHASMTHPFGKGS 320 (534)
Q Consensus 244 sDvVL~VvDAR~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~---~wl~~l~~~~p~v~f~~Sa~~~~gi~~ 320 (534)
++++|++.+.... +.++.-.++++......++++|+||+|+.....+. ..+..+.+.+...+|.+|+.++ ++++
T Consensus 127 a~~ll~ldePt~~--~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e 203 (301)
T 2qnr_A 127 VHCCFYFISPFGH--GLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDE 203 (301)
T ss_dssp CCEEEEEECSSSS--SCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC---------
T ss_pred hhheeeeecCccc--CCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccH
Confidence 4556666653211 12222224444433457899999999998754332 1222222223344577889888 8888
Q ss_pred HHHHHHHHhhhhccccceEEEEEec
Q psy6781 321 IINLLRQFSKLHTERKQISVGFIGY 345 (534)
Q Consensus 321 Li~~L~~~~~~~~~~~~~~v~vvG~ 345 (534)
+...+.+.+.. .+..++||.
T Consensus 204 ~f~~l~~~i~~-----~~p~avigs 223 (301)
T 2qnr_A 204 DFKEQTRLLKA-----SIPFSVVGS 223 (301)
T ss_dssp -CHHHHHHHHT-----TCSEECCCC
T ss_pred HHHHHHHHhhc-----CCCceEECC
Confidence 77666554331 233566764
No 432
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.36 E-value=0.027 Score=51.94 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.5
Q ss_pred EEEEecCCCchhHHHHhhhCC
Q psy6781 340 VGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 340 v~vvG~pnvGKSSliN~L~~~ 360 (534)
++|+|.+|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999874
No 433
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.31 E-value=0.033 Score=51.37 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+..|+|+|.||+||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5578999999999999999998754
No 434
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.26 E-value=0.029 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCchhHHHHhhhCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
+-.++|+|.+|+|||||++.|.+.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 445789999999999999999874
No 435
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.11 E-value=0.043 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3356899999999999999999854
No 436
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.08 E-value=0.07 Score=53.62 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.8
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
..+..|||+|.+|+|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999863
No 437
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.02 E-value=0.059 Score=55.05 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhhccccceEEEEEecCCCchhHHHHhhhC
Q psy6781 319 GSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 319 ~~Li~~L~~~~~~~~~~~~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
..|......+.........+-|||+|.+|+|||||++.|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444444554443344567899999999999999999875
No 438
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.87 E-value=0.04 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
.+-.++|+|.+|+|||||++.|.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45567899999999999999998753
No 439
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=92.81 E-value=0.032 Score=57.58 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhcCEEEEEEeCCCC------CCCCcH--H----HHHHHHh-hCCCCcEEEEEeCCCCCC
Q psy6781 231 KRIWGELYKVIDSSDVVVYVLDVRDP------MGTRCA--H----IENFLRR-EKPHKHLFFILNKVDLVP 288 (534)
Q Consensus 231 kr~~~el~kvI~nsDvVL~VvDAR~P------l~s~~~--~----le~~L~~-~~~~k~~IlVLNKiDLv~ 288 (534)
+.+|.. ...+++.||+|+|..+- ..+.+. . ++..+.. ...+.|+|||+||+||..
T Consensus 175 R~~w~~---yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 175 RKXWVS---FFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHHHT---TSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred cccHHH---HhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 444543 45799999999998621 001121 1 2222221 235789999999999854
No 440
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.75 E-value=0.061 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=19.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
+-.++++|.+|+|||||++.+.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 44578999999999999998653
No 441
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.71 E-value=0.044 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
.+..|+++|.||+|||||++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999999975
No 442
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=92.70 E-value=0.13 Score=54.16 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=30.5
Q ss_pred HhhhcCEEEEEEeCCCC---C---CCCc--HHHHHHHH---h--hCCCCcEEEEEeCCCCC
Q psy6781 240 VIDSSDVVVYVLDVRDP---M---GTRC--AHIENFLR---R--EKPHKHLFFILNKVDLV 287 (534)
Q Consensus 240 vI~nsDvVL~VvDAR~P---l---~s~~--~~le~~L~---~--~~~~k~~IlVLNKiDLv 287 (534)
...++|.||+|+|..+- + .+.+ ..+..++. . ...+.|+|||+||+||.
T Consensus 237 yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp GTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred hccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhh
Confidence 34689999999999861 0 0111 12222322 1 23578999999999984
No 443
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.69 E-value=0.057 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.+-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3457899999999999999999854
No 444
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.67 E-value=0.048 Score=50.95 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.+..|+|+|.||+||||+.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4556789999999999999999754
No 445
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.62 E-value=0.051 Score=48.76 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEEEecCCCchhHHHHhhhCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
..|+++|.||+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999763
No 446
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.56 E-value=0.081 Score=55.96 Aligned_cols=82 Identities=10% Similarity=0.165 Sum_probs=34.3
Q ss_pred hcCEEEEEEeCC-CCCCCCcHHHHHHHHhhCCCCcEEEEEeCCCCCChhhHHHHHHHHh---ccCCeEEeeeccCCCCCh
Q psy6781 243 SSDVVVYVLDVR-DPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILS---KEYPTIAFHASMTHPFGK 318 (534)
Q Consensus 243 nsDvVL~VvDAR-~Pl~s~~~~le~~L~~~~~~k~~IlVLNKiDLv~~~~~~~wl~~l~---~~~p~v~f~~Sa~~~~gi 318 (534)
.+|+||+++++. ..+...+. .++..-..+.++|+|+||+|+.....+..+.+.+. ..+...+|..|+.++.+.
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~---~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v 214 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI---EFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEE 214 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH---HHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-------
T ss_pred CeeEEEEEecCcccCCCHHHH---HHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCH
Confidence 356677777653 23332222 33332234789999999999987654433222211 112233455677777776
Q ss_pred HHHHHHHHH
Q psy6781 319 GSIINLLRQ 327 (534)
Q Consensus 319 ~~Li~~L~~ 327 (534)
..+...|.+
T Consensus 215 ~~~~~~l~~ 223 (418)
T 2qag_C 215 NKLVKKIKD 223 (418)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 665555543
No 447
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.55 E-value=0.12 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.6
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
..+..|+|+|.+|+|||||.+.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998753
No 448
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.53 E-value=0.15 Score=52.98 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=28.9
Q ss_pred ceeEEecCCCCcCCCchhhhhhhhHHHHHHHHHHHhhhcCEEEEEEeCCC
Q psy6781 206 DFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRD 255 (534)
Q Consensus 206 ~q~l~~Dt~Gi~~~~~~~l~~a~lskr~~~el~kvI~nsDvVL~VvDAR~ 255 (534)
....+.|+||+...... ..++. ++.+..+.++|+|++|+|+.+
T Consensus 69 ~~i~lvDtpGl~~~a~~---~~~lg----~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHK---GEGLG----NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCS---SSCTT----HHHHHHHHTCSEEEEEEECCC
T ss_pred ceEEEEECCCccccccc---cchHH----HHHHHHHHhCCEEEEEEECCC
Confidence 35678999998653221 01222 344566889999999999974
No 449
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.44 E-value=0.06 Score=47.59 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.4
Q ss_pred eEEEEEecCCCchhHHHHhh
Q psy6781 338 ISVGFIGYPNVGKSSIINAL 357 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L 357 (534)
+.|+++|.||+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999999
No 450
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.38 E-value=0.057 Score=52.99 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456899999999999999999854
No 451
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.32 E-value=0.068 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=19.2
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy6781 339 SVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~ 359 (534)
.++++|.||+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 452
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.31 E-value=0.059 Score=52.56 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
.++++|.+|+|||||++.|.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999854
No 453
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.30 E-value=0.069 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457999999999999999999864
No 454
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.23 E-value=0.075 Score=47.94 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
+..|+++|.||+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999975
No 455
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.23 E-value=0.063 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
.++++|.+|+|||||++.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999999854
No 456
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.21 E-value=0.061 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3456899999999999999999853
No 457
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.20 E-value=0.063 Score=47.80 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=19.1
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy6781 339 SVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~ 359 (534)
.|+|+|.||+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
No 458
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.19 E-value=0.062 Score=53.59 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3456899999999999999999854
No 459
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.17 E-value=0.064 Score=49.89 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.9
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.+..|+++|.+|+||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4667899999999999999999764
No 460
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.17 E-value=0.086 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.+-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467999999999999999999854
No 461
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.16 E-value=0.076 Score=48.23 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred cceEEEEEecCCCchhHHHHhhhC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
.+..|+++|.||+||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999974
No 462
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.15 E-value=0.049 Score=51.84 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=16.2
Q ss_pred ceEEEEEecCCCchhHHHHhhh-CC
Q psy6781 337 QISVGFIGYPNVGKSSIINALR-NK 360 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~-~~ 360 (534)
+-.++|+|.+|+|||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4567999999999999999999 65
No 463
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.07 E-value=0.078 Score=49.25 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchhHHHHhhhC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~ 359 (534)
+.|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 464
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.03 E-value=0.076 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3356899999999999999999854
No 465
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.01 E-value=0.068 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456899999999999999999853
No 466
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.99 E-value=0.093 Score=48.83 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.+..|+++|.||+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4677999999999999999999875
No 467
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.99 E-value=0.091 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchhHHHHhhhC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
+..|.++|.||+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999964
No 468
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.97 E-value=0.05 Score=51.25 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEecCCCchhHHHHhhhCC
Q psy6781 340 VGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 340 v~vvG~pnvGKSSliN~L~~~ 360 (534)
|.|+|.+||||+||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999854
No 469
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.96 E-value=0.068 Score=52.23 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
+-.++++|.+|+|||||++.|.|-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 335689999999999999999985
No 470
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.95 E-value=0.078 Score=51.00 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHhhh---CCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALR---NKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~---~~~ 361 (534)
...|+|+|.||+||||+++.|. +..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4578999999999999999999 653
No 471
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.91 E-value=0.075 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.+-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999999864
No 472
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.86 E-value=0.086 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchhHHHHhhhC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~ 359 (534)
..|.++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3578999999999999999975
No 473
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.80 E-value=0.074 Score=52.18 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456899999999999999999864
No 474
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.74 E-value=0.081 Score=50.98 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457899999999999999999854
No 475
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.73 E-value=0.086 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.+-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4457999999999999999999853
No 476
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.73 E-value=0.084 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=19.7
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy6781 339 SVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~ 359 (534)
.|+++|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999986
No 477
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.71 E-value=0.073 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.0
Q ss_pred ccceEEEEEecCCCchhHHHHhhhCC
Q psy6781 335 RKQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 335 ~~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
..+..|||+|.+|+|||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45778899999999999999999874
No 478
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.68 E-value=0.088 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3456899999999999999999853
No 479
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.64 E-value=0.068 Score=54.25 Aligned_cols=25 Identities=44% Similarity=0.626 Sum_probs=21.7
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.+-.++|+|.+|+|||||++.|.+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4557799999999999999999863
No 480
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.62 E-value=0.083 Score=49.58 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchhHHHHhhhCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
...|+++|.||+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 481
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.62 E-value=0.09 Score=52.14 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++|+|.+|+|||||++.|.+-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457899999999999999999854
No 482
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.57 E-value=0.086 Score=52.58 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456899999999999999999854
No 483
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.56 E-value=0.099 Score=47.30 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy6781 339 SVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~ 359 (534)
.|.|+|.||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 484
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.52 E-value=0.21 Score=52.93 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=23.8
Q ss_pred cceEEEEEecCCCchhHHHHhhh-------CCCceee
Q psy6781 336 KQISVGFIGYPNVGKSSIINALR-------NKKVCKT 365 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~-------~~~~~~v 365 (534)
+...|+++|.+||||||+...|. +.+++-+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 35678899999999999999987 6665443
No 485
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.52 E-value=0.069 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchhHHHHhhhCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
+-.++++|.+|+|||||++.|.+.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999999986
No 486
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.52 E-value=0.094 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456899999999999999999854
No 487
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.50 E-value=0.083 Score=51.86 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3356899999999999999999854
No 488
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.48 E-value=0.083 Score=49.07 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchhHHHHhhhCC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
..++|+|.+|+|||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999864
No 489
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.47 E-value=0.088 Score=48.20 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.4
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy6781 339 SVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~ 359 (534)
.|+|+|.||+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999975
No 490
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.41 E-value=0.096 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchhHHHHhhhCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
+-.++++|.+|+|||||++.|.|-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345789999999999999999985
No 491
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.40 E-value=0.093 Score=47.51 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchhHHHHhhhC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
+..|+|.|.||+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999975
No 492
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.34 E-value=0.11 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.3
Q ss_pred cceEEEEEecCCCchhHHHHhhhC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
++..|+|+|.||+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999974
No 493
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.33 E-value=0.11 Score=48.20 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.4
Q ss_pred cceEEEEEecCCCchhHHHHhhhC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
.+..|+|+|.||+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 494
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.32 E-value=0.1 Score=51.53 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
+-.++++|.+|+|||||++.|.|-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999853
No 495
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.30 E-value=0.097 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchhHHHHhhhC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~ 359 (534)
..|.++|+||+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999975
No 496
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.20 E-value=0.11 Score=47.81 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchhHHHHhhhC
Q psy6781 337 QISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 337 ~~~v~vvG~pnvGKSSliN~L~~ 359 (534)
+..|+|.|.||+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46789999999999999999975
No 497
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.20 E-value=0.075 Score=53.88 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHhhhCCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNKK 361 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~~ 361 (534)
.+-.++|+|.+|+|||||++.|.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 35568999999999999999999854
No 498
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.13 E-value=0.094 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.1
Q ss_pred cceEEEEEecCCCchhHHHHhhhCC
Q psy6781 336 KQISVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 336 ~~~~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.+..|||+|.+|+|||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4667999999999999999999863
No 499
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.08 E-value=0.051 Score=50.30 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy6781 339 SVGFIGYPNVGKSSIINALRNK 360 (534)
Q Consensus 339 ~v~vvG~pnvGKSSliN~L~~~ 360 (534)
.++|+|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999864
No 500
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.07 E-value=0.095 Score=48.56 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchhHHHHhhhC
Q psy6781 338 ISVGFIGYPNVGKSSIINALRN 359 (534)
Q Consensus 338 ~~v~vvG~pnvGKSSliN~L~~ 359 (534)
..|+|+|.||+||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
Done!