RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6781
(534 letters)
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 265 bits (680), Expect = 5e-86
Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 34/287 (11%)
Query: 225 MAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKV 284
+ ++KR +L ++++ VV V D R P T ++ K +LNKV
Sbjct: 8 IE--KAKRQIKDLLRLVN---TVVEVRDARAPFATSAYGVD------FSRKETIILLNKV 56
Query: 285 DLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIG 344
D+ T++WV K+ + KG +L + KL +R V +G
Sbjct: 57 DIADEKTTKKWVEFFKKQGKRVIT-------THKGEPRKVLLK--KLSFDRL-ARVLIVG 106
Query: 345 YPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY-DMTNVETDT 403
PN GKS+IIN L+ K+ PG TK Q+ +L + ++D PG++Y ++ + +
Sbjct: 107 VPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFSEDLAA 166
Query: 404 EKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFKWGKIKK 463
+ +L G + VE I+D + ER + ++ GI+ +F + A K G +KK
Sbjct: 167 KLLLVGSLPVERIEDQ-----RIFERAFE-IFARSIGIE--SSFSEFFEDFARKRGLLKK 218
Query: 464 KGEPVITASAKMVLNDWQRGKLPYYTVPEGFEVPLSKQGEADKEANT 510
G P I + + + +GK + FE P ++
Sbjct: 219 GGVPDIERALMLFFTEVAQGKAGRVS----FERPEDITPVQQEQTRG 261
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 254 bits (652), Expect = 2e-81
Identities = 67/283 (23%), Positives = 124/283 (43%), Gaps = 23/283 (8%)
Query: 228 GQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLV 287
G + E+ + + D+V ++D R PM +R IE+ L+ +K +LNK D
Sbjct: 8 GHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKA 63
Query: 288 PIWVTQRWVAILSKE-YPTIAFHASMTHPFGKGSIINLLRQFSKLHTER--------KQI 338
VTQ+W + +++ ++ + G I+ ++ + +R + I
Sbjct: 64 DAAVTQQWKEHFENQGIRSLSINS--VNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY-DMT 397
IG PNVGKS++IN L K + KT PG T Q++ + + + L+D PG+++
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFE 181
Query: 398 NVETDTEKVLRGVVR--VENIDDPVQYIDAVLERIKKVHLVKTYGIDEW-EDTEDFLKKL 454
+ + G ++ + N+ D + LE L + YG+DE ED + +
Sbjct: 182 DELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAI 241
Query: 455 AFKWGKIKKKGEPVITASAKMVLNDWQRGKLPYYTVPEGFEVP 497
K G + G + ++++ D + K + FE P
Sbjct: 242 GEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLS----FEQP 280
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 151 bits (382), Expect = 3e-41
Identities = 46/241 (19%), Positives = 83/241 (34%), Gaps = 40/241 (16%)
Query: 236 ELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQ-- 293
L+++ +S +VV ++D+ D G+ + F + + NK DL+P V
Sbjct: 64 MLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA----DNPILLVGNKADLLPRSVKYPK 119
Query: 294 --RWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKS 351
RW+ +++E + + ++ ++ R+ V +G NVGKS
Sbjct: 120 LLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVME---AINRYREGGDVYVVGCTNVGKS 176
Query: 352 SIINAL-----RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKV 406
+ IN + V T+ PG T I L L D PG++ +
Sbjct: 177 TFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARD 236
Query: 407 LR------------------------GVVRVENIDDPVQYIDAVLERIKKVHLVKTYGID 442
L+ G+ R++ I + + VH K D
Sbjct: 237 LKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKAD 296
Query: 443 E 443
Sbjct: 297 S 297
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 125 bits (316), Expect = 4e-32
Identities = 43/198 (21%), Positives = 71/198 (35%), Gaps = 23/198 (11%)
Query: 236 ELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRW 295
L + S +VV ++D+ D G+ + F+ + + NK DL+P V
Sbjct: 62 ILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGN----NKVLLVGNKADLIPKSVKHDK 117
Query: 296 VAILSKEY-------PTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNV 348
V + P F S G + + + + R V +G NV
Sbjct: 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY------RGGKDVYVVGCTNV 171
Query: 349 GKSSIINAL------RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETD 402
GKS+ IN + + V T+ PG T I L L D PG++
Sbjct: 172 GKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYV 231
Query: 403 TEKVLRGVVRVENIDDPV 420
++ L+ + + I V
Sbjct: 232 GKQSLKLITPTKEIKPMV 249
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 7e-11
Identities = 76/528 (14%), Positives = 149/528 (28%), Gaps = 148/528 (28%)
Query: 57 VAKPRTKATIRRLQMYRCFKAKRDKTGKIIHPAPFQ---GWVPSGTQSRV---EPNRKWF 110
+ + RL + +K+++ + + ++ S ++ + +
Sbjct: 55 IMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 111 DNTRVISQNSLQKFQEEFGKAIKNPYDV-IMKPTNLPITLLNEVRKHERVHVLDTESYES 169
R N Q F Y+V ++P L E+R + V
Sbjct: 113 IEQRDRLYNDNQVFA---------KYNVSRLQPYLKLRQALLELRPAKNV---------L 154
Query: 170 VFGKKKQRKKANLSITNESELAALVQTSNENYKEEKDFDIVRDNGGVTDAPRDWVMAAGQ 229
+ G K + +A V + + + DF I N ++P V+ Q
Sbjct: 155 IDGVLGSGK---------TWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQ 203
Query: 230 SKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRR---EKPHKHLFFILNKVDL 286
L ID + D + R I+ LRR KP+++ +L V
Sbjct: 204 K------LLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 287 VPIW----------VTQRWVAILSKEYPTIAFHASMTH---PFGKGSIINLLRQF----- 328
W +T R+ + H S+ H + +LL ++
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 329 SKLHTERKQIS---VGFIG------------YPNVGKSSIINALRNKKVC---------- 363
L E + + I + +V + + +
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVLEPAEYR 372
Query: 364 ----------KTAPVPGET--KVWQYIT----------LMRR-----------IYLIDCP 390
+A +P +W + L + I +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-- 430
Query: 391 GVVYDMTNVETDTEKVL-RGVVRVENIDDPVQYIDAVLERIKKV-------HLVKTYGID 442
+Y V+ + E L R +V NI D + + + HL +
Sbjct: 431 --IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 443 EWEDTEDFLKKLAFKW--GKIKKKGEPVITASAKMVLNDWQRGKLPYY 488
L F++ KI+ + + +LN Q+ L +Y
Sbjct: 489 RMTLFRMVF--LDFRFLEQKIRHDSTAWNASGS--ILNTLQQ--LKFY 530
Score = 49.9 bits (118), Expect = 2e-06
Identities = 50/340 (14%), Positives = 101/340 (29%), Gaps = 115/340 (33%)
Query: 245 DVVVYVLD--VRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVP-----IW------- 290
D++ D V + C +++ + + + I+ D V W
Sbjct: 20 DILSVFEDAFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 291 -VTQRWV-AILSKEYPTI--AFHASMTHPFG--------KGSIINLLRQFSKLHTERKQ- 337
+ Q++V +L Y + P + + N + F+K + R Q
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 338 ----------------ISV-GFIGYPNVGKSS-IINALRNKKVCKTAPVPGETKV-WQYI 378
+ + G +G GK+ ++ + KV K+ W +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLG---SGKTWVALDVCLSYKVQCKMD----FKIFW--L 187
Query: 379 T-------------LMRRIYLIDCPGVVYD--MTNVETDTEKV---LRGVVRVEN----- 415
L + +Y ID +N++ + LR +++ +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 416 --IDDPVQY---IDA--------VLERIKKV------HLVKTYGIDEWED--TEDFLKKL 454
+ + VQ +A + R K+V +D T D +K L
Sbjct: 248 LVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 455 AFKWGKIKKKGEP------------VITASAKMVLNDWQR 482
K+ + + P +I S + L W
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Score = 30.6 bits (68), Expect = 1.5
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 371 ETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERI 430
ET QY + I + V + + + D + + + ++ E ID + DAV +
Sbjct: 10 ETGEHQYQY--KDILSVFEDAFVDNF-DCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 431 KKVHLVKTYGIDEWED-TEDFLKK-LAFKWGKIKKKGEPVITASAKMVLNDWQRGKLPYY 488
+ + + + + E+ L+ F IK E S + QR +L Y
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT--EQ-RQPSMMTRMYIEQRDRL--Y 120
Query: 489 TVPEGF 494
+ F
Sbjct: 121 NDNQVF 126
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 57.3 bits (139), Expect = 9e-10
Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 29/175 (16%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI--TLMRRIYLIDCPGVVYDMT 397
+ F G NVGKS++I L KKV + PG T + I + +ID PG + M
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVT---RKIIEIEWKNHKIIDMPGFGFMMG 59
Query: 398 NVETDTEKVLRGVV-----RVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLK 452
+ E++ +V +NID V +D + + + E +F +
Sbjct: 60 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG---KAAPEIIKRWEKRGEIPIDVEFYQ 116
Query: 453 KLAFKWGKIKKKGEPVITASAKM--------VLNDWQRGKLPYYTVPEGFEVPLS 499
L ++ P I A K+ V+N + + +P+S
Sbjct: 117 FL-------RELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPIS 164
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 57.8 bits (139), Expect = 3e-09
Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 14/144 (9%)
Query: 334 ERKQISVGFIGYPNVGKSSIINALRNKK-----VCKTAPVPGETKVWQYIT-LMRRIYLI 387
+ ++V G GKSS IN LR KT V + Y + +
Sbjct: 66 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 125
Query: 388 DCPGVVYDMTNVETDTEKV--LRGVVRVENIDDPVQYIDAVLERI-----KKVHLVKTYG 440
D PG+ +T EK+ + + D + + K+ + V+T
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRT-K 184
Query: 441 IDEWEDTEDFLKKLAFKWGKIKKK 464
+D E + F K+ +
Sbjct: 185 VDSDITNEADGEPQTFDKEKVLQD 208
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 55.8 bits (135), Expect = 1e-08
Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 32/135 (23%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGET--KVWQYITL--MRRIYLIDCPGVVYD 395
+ G NVGKSS +NAL + V + G T V++ + L + + L+D PG+
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL--- 93
Query: 396 MTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGID-EWEDTEDFLKKL 454
D L G +RVE D + LV D ED +
Sbjct: 94 ------DDVGEL-GRLRVEKARRVFYRADCGI-------LV----TDSAPTPYEDDVVN- 134
Query: 455 AFKWGKIKKKGEPVI 469
K+ P +
Sbjct: 135 -----LFKEMEIPFV 144
Score = 35.0 bits (81), Expect = 0.052
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVP 288
+V +D + V D + N + + ++NK+D++
Sbjct: 108 RRVFYRADCGILVTDSAPTPYED--DVVNLFKEME--IPFVVVVNKIDVLG 154
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 52.6 bits (127), Expect = 4e-08
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPG 391
V F+G NVGKSS++NAL N+K+ + PG+T+ + + + Y +D PG
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPG 77
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 53.6 bits (130), Expect = 7e-08
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 27/145 (18%)
Query: 241 IDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILS 300
+D +DV++++++ R+ + + L R K K + +NK+D
Sbjct: 80 MDEADVIIFMVNGREGVTAADEEVAKILYRTK--KPVVLAVNKLD------------NTE 125
Query: 301 KEYPTIAFHA---------SMTHPFGKGS----IINLLRQFSKLHTERKQISVGFIGYPN 347
F++ S TH G G + + + + I IG PN
Sbjct: 126 MRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPN 185
Query: 348 VGKSSIINALRNKKVCKTAPVPGET 372
VGKSS++NA+ ++ + V G T
Sbjct: 186 VGKSSLVNAMLGEERVIVSNVAGTT 210
Score = 30.5 bits (70), Expect = 1.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGET 372
V +G PNVGKS+I N + +++ PG T
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVT 38
Score = 28.6 bits (65), Expect = 5.0
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 239 KVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLV 287
K ID S+VV VLD + + + I + K + ++NK D V
Sbjct: 253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAG--KAVVIVVNKWDAV 299
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 51.4 bits (123), Expect = 2e-07
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 324 LLRQFSKLH-TERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM- 381
L+ F KL + ++V +G VGKSS +N+L ++V + +P E ++
Sbjct: 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM 81
Query: 382 --RRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYID 424
I +ID PG + + V ++++G + I D + Y+D
Sbjct: 82 GGFTINIIDTPG-LVEAGYVNHQALELIKGFLVNRTI-DVLLYVD 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 3e-07
Identities = 57/265 (21%), Positives = 93/265 (35%), Gaps = 84/265 (31%)
Query: 182 LSITNES--ELAALVQTSNENYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWG---E 236
LSI+N + ++ V +N + K +I NG ++ V+ +G + ++G
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-----AKNLVV-SGPPQSLYGLNLT 392
Query: 237 LYKV-----IDSSDVVVYVLDVRDPMGTRCAHIEN-FLRREKP-HKHLFFILNK-VDLVP 288
L K +D S R P R N FL P H HL L DL+
Sbjct: 393 LRKAKAPSGLDQS---------RIPFSERKLKFSNRFLPVASPFHSHL---LVPASDLIN 440
Query: 289 IWVTQRWVAILSKE--YPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYP 346
+ + V+ +K+ P + T GS + LR S +ER
Sbjct: 441 KDLVKNNVSFNAKDIQIPV--YD---TF---DGS--D-LRVLSGSISER----------- 478
Query: 347 NVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDC-PGVVYDMTNVETDTEK 405
I++ + PV W+ T + +++D PG + + T +
Sbjct: 479 ------IVDCII------RLPV-----KWETTTQFKATHILDFGPGGASGLGVL---THR 518
Query: 406 VLRGV-VRV-------ENIDDPVQY 422
G VRV N DD +
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 46.6 bits (110), Expect = 2e-05
Identities = 89/562 (15%), Positives = 151/562 (26%), Gaps = 245/562 (43%)
Query: 105 PNRKWFDNTRVISQNSLQKFQEEFGKAIKNPYDVIM---KPTNLPITLL----------- 150
P +F + SQ QE+F K + P + +PT P L+
Sbjct: 23 PTASFF----IASQ-----LQEQFNKILPEPTEGFAADDEPTT-PAELVGKFLGYVSSLV 72
Query: 151 --------------------------NEVRKHERVHVLDTESYESVFGKKKQ-------- 176
N++ H L E+ ++ K K+
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQEN-DTTLVKTKELIKNYITA 129
Query: 177 RKKANLSITNESELAALV----------------QTSNENYKEE-KD-FDIVRDNGGVTD 218
R A +S +AL Q + ++Y EE +D + T
Sbjct: 130 RIMAKRPFDKKSN-SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--------TY 180
Query: 219 AP--RDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRD--------------------- 255
D + + + + + +D+ V L++ +
Sbjct: 181 HVLVGDLIKFSAE--TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 256 PM-G-TRCAHIENFLRR-EKPHKHLFFILNKV-----DLV---PIWVTQRW--------- 295
P+ G + AH + L L LV I T W
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 296 -VAIL------SKE-YPTIAFHASMTH---PFGKG------SIINL--------LRQFSK 330
+ +L E YP + S+ +G SI NL + + +
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 331 LHTERKQISVG-------FI--GYPNVGKS--SIINALRNKKV---CKTAPVPG-ETK-- 373
KQ+ + + G P +S + LR K + +P E K
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPP---QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 374 -VWQY--IT------------------LMRRIYLID-----CPGVVYDMTNVETDTEKVL 407
++ + L++ + P VYD T L
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VYD-----TFDGSDL 468
Query: 408 RGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTE--------DF-------LK 452
R + +I + + +D ++ V WE T DF L
Sbjct: 469 RVL--SGSISERI--VDCIIR--LPVK---------WETTTQFKATHILDFGPGGASGLG 513
Query: 453 KLAFKWGKIKK-KGEPVITASA 473
L + K G VI A
Sbjct: 514 VLT---HRNKDGTGVRVIVAGT 532
Score = 33.9 bits (77), Expect = 0.17
Identities = 45/314 (14%), Positives = 91/314 (28%), Gaps = 119/314 (37%)
Query: 186 NESELA-ALVQTSNENYKEEKDF---DIVRDNGGVTDAPRDW-VMAAGQ-SKRIWGELYK 239
S+ A + ++ ++K+ F DIV +N P + + G+ KRI E Y
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINN------PVNLTIHFGGEKGKRI-RENY- 1688
Query: 240 VIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIW--------- 290
+++ E + + + +F +N+ +
Sbjct: 1689 -----SAMIF---------------ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 291 --VTQRWVAILSKEY------------PTIAFHASMTHPFG--------KGSI-----IN 323
TQ A+ E P A A H G + +
Sbjct: 1729 TQFTQ--PALTLMEKAAFEDLKSKGLIPADATFAG--HSLGEYAALASLADVMSIESLVE 1784
Query: 324 LLRQ---FSKLHTERKQISVGFIGYPNVGKSSIINALRN---KKVCKTA---------PV 368
++ ++ R ++ G + + + + V + V
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 369 ----PGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDD---PVQ 421
+ QY+ G D+ ++T T VL ++++ ID
Sbjct: 1845 NYNVENQ----QYV----------AAG---DLRALDTVTN-VLN-FIKLQKIDIIELQKS 1885
Query: 422 YIDAVLERIKKVHL 435
LE ++ HL
Sbjct: 1886 L---SLEEVEG-HL 1895
Score = 33.1 bits (75), Expect = 0.27
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 425 AVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFKWGKIKKKGEPVITASAKMVLNDWQRGK 484
V R H TYG + + L +G +KG+ + + M+ GK
Sbjct: 1644 DVWNRADN-HFKDTYGFSILDIVINNPVNLTIHFG--GEKGKRIRENYSAMIFETIVDGK 1700
Query: 485 LPYYTVPEGFEVPLSK---QGEADKEANTESKDTTAAI 519
L + + + + E + T+ T A+
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQF--TQPAL 1736
Score = 32.7 bits (74), Expect = 0.43
Identities = 31/186 (16%), Positives = 48/186 (25%), Gaps = 72/186 (38%)
Query: 352 SIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVV 411
SI++ + N V T GE + I R Y M E ++ G +
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKG--KRI---RENYS--------AMI-----FETIVDGKL 1701
Query: 412 RVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAF-----------KWGK 460
+ E I + E + + L F +
Sbjct: 1702 KTEKIFKEIN------EHSTSYT---------FRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 461 IKKKG---EPVITA-------SA--------------KMVLNDWQRGKLPYYTVPEGFEV 496
+K KG A +A ++V RG VP E+
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF---YRGMTMQVAVPRD-EL 1802
Query: 497 PLSKQG 502
S G
Sbjct: 1803 GRSNYG 1808
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 48.6 bits (117), Expect = 5e-07
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDCPGV 392
K + IG PNVGKS+I NAL + V PG E K ++ + ++D PG
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG- 59
Query: 393 VYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
VY +T D E + R + E D V +DA LER
Sbjct: 60 VYSLTANSID-EIIARDYIINEKPDLVVNIVDATALER 96
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 51.0 bits (123), Expect = 6e-07
Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 43/189 (22%)
Query: 205 KDFDIVRDNGGVTDAPRDWVMA--AGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCA 262
K F +V D GV D P+D + + +I +D+V++V+D + +
Sbjct: 49 KTFKLV-DTCGVFDNPQDIISQKMKEVTLN-------MIREADLVLFVVDGKRGITKEDE 100
Query: 263 HIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKE---------YPTIAFHASMT 313
+ +FLR+ + NK + + + + + E P A H
Sbjct: 101 SLADFLRKST--VDTILVANKAENL-----REFEREVKPELYSLGFGEPIPVSAEH---- 149
Query: 314 HPFGKGS------IINLL----RQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVC 363
II L I V +G PNVGKS++ NA+ NK+
Sbjct: 150 ---NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERA 206
Query: 364 KTAPVPGET 372
+P+PG T
Sbjct: 207 LVSPIPGTT 215
Score = 30.2 bits (69), Expect = 2.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGET 372
V +G PNVGKS++ N L KK G T
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVT 36
Score = 29.0 bits (66), Expect = 4.5
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVP 288
I+ +DVVV VLD + + + + R + + NK DLV
Sbjct: 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERRG--RASVVVFNKWDLVV 306
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 48.7 bits (117), Expect = 7e-07
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 333 TERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDC 389
+ K + IG PNVGKS+I NAL + V PG E K ++ + ++D
Sbjct: 3 SHMKSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDL 61
Query: 390 PGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
PG VY +T D E + R + E D V +DA LER
Sbjct: 62 PG-VYSLTANSID-EIIARDYIINEKPDLVVNIVDATALER 100
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 48.8 bits (117), Expect = 1e-06
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 340 VGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPG 391
V F G N GKSS +N L K + +T+ PG T++ + L+D PG
Sbjct: 29 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPG 81
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 49.2 bits (118), Expect = 1e-06
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDCPG 391
+ V G PNVGK+S+ NAL K A PG E K + I LID PG
Sbjct: 3 LHMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
Query: 392 VVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
Y + D EK+ R + + D + D+V E+
Sbjct: 62 -TYSLGYSSID-EKIARDYLLKGDADLVILVADSVNPEQ 98
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 47.9 bits (115), Expect = 2e-06
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 340 VGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPG 391
+ G NVGKSS IN+L K + +T+ PG+T+ + + ++ +D PG
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPG 78
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 48.1 bits (115), Expect = 3e-06
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDCPGV 392
K++++G IG PN GK+++ N L + + G E K Q+ T ++ L+D PG
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPG- 59
Query: 393 VYDMT---NVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
Y +T + + E++ + + D + +DA LER
Sbjct: 60 TYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER 100
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 46.3 bits (110), Expect = 7e-06
Identities = 31/156 (19%), Positives = 50/156 (32%), Gaps = 23/156 (14%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK---VWQYITLMRRIYLIDCPGVV--- 393
+ G PNVGKSS +N + V TK V + + + +ID PG++
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90
Query: 394 -YDMTNVETDTEKVLRGVVRV--------ENIDDPVQYIDAVLERIKKVHLVKTYGI--- 441
+ +E T L + V E ++ + IK V K+ I
Sbjct: 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFN 150
Query: 442 ----DEWEDTEDFLKKLAFKWGKIKKKGEPVITASA 473
+ K L + K + S
Sbjct: 151 KIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFST 186
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 46.2 bits (110), Expect = 8e-06
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 340 VGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYI-------TLMRRIYLIDCPG 391
+ F G N GKS+ IN L K++ + PG T Q+I +L+D PG
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRT---QHINYFSVGPAAEPVAHLVDLPG 88
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 46.1 bits (110), Expect = 9e-06
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDCPGVVY 394
IG PN GK+++ NAL N + PG E K +++ I + D PG VY
Sbjct: 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPG-VY 59
Query: 395 DMTNVETDT---EKVLRGVVRVENIDDPVQYIDAV-LER 429
+ E++ V D + IDA LER
Sbjct: 60 SLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLER 98
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 46.2 bits (110), Expect = 1e-05
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDCPGV 392
+V +G PNVGK++I NAL + PG E K + ++D PG
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPG- 59
Query: 393 VYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
+Y +T D E + R + N D V +D+ L R
Sbjct: 60 IYSLTAHSID-ELIARNFILDGNADVIVDIVDSTCLMR 96
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 46.1 bits (109), Expect = 1e-05
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 316 FGKGSIINLLRQFSKLHTE-RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV 374
F + LL L E +++ +G VGKSS +N++ ++V +P E
Sbjct: 17 FAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR 76
Query: 375 WQYITLM---RRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVL 427
++ + +ID PG + + L + D +L
Sbjct: 77 PVMVSRSRAGFTLNIIDTPG----LIEGGYINDMALNIIKSFLLDKTI----DVLL 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 45.4 bits (108), Expect = 2e-05
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGET--KVWQYITLMRRIYLIDCPGVV 393
+ IG PN GK+S+ N + + PG T + + + + + D PG +
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKKNKDLEIQDLPG-I 59
Query: 394 YDMTNVETDTEKVLRGVVRVENIDDPVQYIDAV-LER 429
Y M+ + KV R + + D + +DA LER
Sbjct: 60 YSMSPYSPE-AKVARDYLLSQRADSILNVVDATNLER 95
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 45.6 bits (109), Expect = 3e-05
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVA 297
+ +D+++Y+LD+ L+ P + NK+D
Sbjct: 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAI 366
Query: 298 ILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327
I A G G I+ L+Q
Sbjct: 367 ADGTGTEVIGISALN----GDG--IDTLKQ 390
Score = 36.0 bits (84), Expect = 0.032
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 338 ISVGFIGYPNVGKSSIINAL 357
+S G PN GKS+++N L
Sbjct: 234 VSTVIAGKPNAGKSTLLNTL 253
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 41.4 bits (98), Expect = 6e-04
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVA 297
+ I+ +D+V++VLD P+ I + +K ++NKVD+V +
Sbjct: 318 LQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKN 373
Query: 298 ILSKEYPTIAFHASMTHPFGKGSIINLLRQ 327
L + + A G+G + L +
Sbjct: 374 KLGTDRHMVKISALK----GEG--LEKLEE 397
Score = 36.0 bits (84), Expect = 0.030
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 318 KGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINAL 357
K + L++ + + + +G PNVGKS+++N L
Sbjct: 224 KEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRL 263
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 41.0 bits (96), Expect = 7e-04
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 30/162 (18%)
Query: 334 ERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETK---VWQYITLMRRIYLIDCP 390
+ + +V G+PNVGKS+++ AL K + A P T+ V Q+ R +ID P
Sbjct: 164 DLEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTP 222
Query: 391 GV----VYDMTNVETDTEKVLRGVVRV--------ENIDDPVQYIDAVLERIK-----KV 433
G+ + + +E LR + + E+ P++ + E +
Sbjct: 223 GLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP 282
Query: 434 HLVKTYGID--EWEDTEDFLKKLAFKWGKIKKKGEPVITASA 473
LV ID + E+ + K + K+KG I SA
Sbjct: 283 FLVVINKIDVADEENIKRLEKFV-------KEKGLNPIKISA 317
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 37.6 bits (87), Expect = 0.004
Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 231 KRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL---RREKPHKHLFFILNKVDLV 287
+ + + ++YV+D +D + + + P + ++KVD +
Sbjct: 83 FDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142
Query: 288 P 288
Sbjct: 143 S 143
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 37.9 bits (89), Expect = 0.005
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 280 ILNKVDLVPIWVTQRWVAILSKEYPTI---AFHASMTHPFGKGSIINLLRQFSKLHTERK 336
+ K+DL+ T+ + +++Y I + S II +
Sbjct: 123 CITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQD--------- 173
Query: 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPV 368
+ +V F G VGKSS++NA+ + +T +
Sbjct: 174 KTTV-FAGQSGVGKSSLLNAISPELGLRTNEI 204
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 37.8 bits (89), Expect = 0.005
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 241 IDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVP 288
+ + VV+V+D+R P + L+ + + NK+D
Sbjct: 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131
Score = 37.4 bits (88), Expect = 0.008
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVP 369
V +G PNVGKS+++N L KV +P P
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRP 39
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 37.1 bits (87), Expect = 0.005
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 238 YKVIDSSDVVVYVLDVRDPMGTRCAHI-ENFLRREKPHKHLFFILNKVDLVP 288
++ I+ +D V++++D A I F+ R + + NK D+
Sbjct: 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 129
Score = 35.6 bits (83), Expect = 0.015
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGET 372
+ V G PN GKSS++NAL ++ + G T
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 39
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 37.4 bits (86), Expect = 0.008
Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 17/183 (9%)
Query: 343 IGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETD 402
+G +GKS++IN+L + ++ + + + + LI GV +T V D
Sbjct: 14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIV--D 71
Query: 403 TEKVLRGVVRVENIDDPVQYIDAVLERI--------------KKVHLVKTYGIDEWEDTE 448
T V + YID+ E +V Y I
Sbjct: 72 TPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL-YFIAPSGHGL 130
Query: 449 DFLKKLAFKWGKIKKKGEPVITASAKMVLNDWQRGKLPYYTVPEGFEVPLSKQGEADKEA 508
L K K P+I + + + Q+ K + ++ + + E D E
Sbjct: 131 KPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEE 190
Query: 509 NTE 511
+
Sbjct: 191 ENK 193
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 37.1 bits (87), Expect = 0.011
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVP 369
V +G PNVGKS+++N L KV +P
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKA 42
Score = 31.7 bits (73), Expect = 0.50
Identities = 11/49 (22%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 241 IDSSDVVVYVLDVRDPMGTRCAHI-ENFLRREKPHKHLFFILNKVDLVP 288
++ +DV+++++D + R I +NF++ K + ++NK+D +
Sbjct: 90 LEEADVILFMIDATEGWRPRDEEIYQNFIKPLN--KPVIVVINKIDKIG 136
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 37.5 bits (88), Expect = 0.011
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 238 YKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVP 288
+ +++D+V+ +D T I + H+ L ++NK+DLV
Sbjct: 298 RQAANTADLVLLTIDAATGWTTGDQEIYEQV----KHRPLILVMNKIDLVE 344
Score = 35.9 bits (84), Expect = 0.029
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 338 ISVGFIGYPNVGKSSIINAL 357
+ V +G PNVGKSS++NA
Sbjct: 225 LKVAIVGRPNVGKSSLLNAW 244
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 37.3 bits (85), Expect = 0.012
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 334 ERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVP 369
++ + +G GKS+ +NAL + + + P
Sbjct: 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNP 101
Score = 33.4 bits (75), Expect = 0.19
Identities = 20/154 (12%), Positives = 51/154 (33%), Gaps = 20/154 (12%)
Query: 143 TNLPITLLNEVRKHERVHVLDTESYESVFGKKKQRKKANLSITNESELAALVQTSNENYK 202
T + L K +H D +S + + + + K + +E L Q + +
Sbjct: 103 TAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKY----TIDPAEAKKLEQEKKQAFP 158
Query: 203 EEKDFDI------VRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDP 256
+ + ++ + D+P + + +++ +++V+ P
Sbjct: 159 DVDYAVVEYPLTLLQKGIEIVDSPG--LNDTEARNELS---LGYVNNCHAILFVMRASQP 213
Query: 257 MGTRCAHIENFLRR--EKPHKHLFFILNKVDLVP 288
+L + +FF++N D V
Sbjct: 214 CTL--GERR-YLENYIKGRGLTVFFLVNAWDQVR 244
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 36.8 bits (86), Expect = 0.016
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 340 VGFIGYPNVGKSSIINAL 357
VG +GYPN GKSS++ A+
Sbjct: 160 VGLVGYPNAGKSSLLAAM 177
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 36.3 bits (85), Expect = 0.019
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVP 369
+ +G PNVGKS+++N L +K+ T+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKA 40
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 36.0 bits (84), Expect = 0.023
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 280 ILNKVDLV---PIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERK 336
++NK+DL + + I S YP + S G + L+
Sbjct: 121 VINKMDLYDEDDLRKVRELEEIYSGLYPIV--KTSAKTGMGIEELKEYLKG--------- 169
Query: 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPV 368
+IS G VGKSS++NA+ + + V
Sbjct: 170 KIST-MAGLSGVGKSSLLNAINPGLKLRVSEV 200
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 35.6 bits (83), Expect = 0.031
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 340 VGFIGYPNVGKSSIINALRNKK 361
VG +G+P+VGKS++++ + + K
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAK 182
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 34.6 bits (79), Expect = 0.052
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 309 HASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPV 368
H H G+ ++ + Q+ + +G GKS+ N++ +KV +
Sbjct: 2 HHHHHHSSGRENLYFQGGPGRQ-EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTA 60
Query: 369 PG-ETKVWQYITLM---RRIYLIDCPG 391
TK + + + ++D PG
Sbjct: 61 AKSITKKCEKRSSSWKETELVVVDTPG 87
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 34.9 bits (81), Expect = 0.060
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 321 IINLLRQFSKLHTERKQ----------ISVGFIGYPNVGKSSIINALRNKKV 362
I L+++ + +++ S+G +GY N GK+S+ N+L
Sbjct: 153 INKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ 204
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 34.3 bits (78), Expect = 0.088
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 239 KVIDSSDVVVYVLDVRDP---MGTRCAHIENFLRREKPHKHLFFILNKVDLVP 288
++ S +VYV+D +D T A I + + P ++ +++KVD +
Sbjct: 68 RLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 33.3 bits (77), Expect = 0.15
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 280 ILNKVDLVPIWVTQRWVAILSKEYPTI---AFHASMTHPFGKGSIINLLRQFSKLHTERK 336
+ NK+DL+ + + Y S G +++ L
Sbjct: 116 VFNKIDLLNEEEKKELERWI-SIYRDAGYDVLKVSAKTGEGIDELVDYLEG--------- 165
Query: 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPV 368
I + G VGKSSI++ L +++ +T V
Sbjct: 166 FICI-LAGPSGVGKSSILSRLTGEEL-RTQEV 195
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 32.5 bits (75), Expect = 0.16
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 241 IDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVD 285
++ ++VV++ +D R + + +LRR+ K + + KVD
Sbjct: 77 LEDAEVVLFAVDGRAELTQADYEVAEYLRRKG--KPVILVATKVD 119
Score = 31.7 bits (73), Expect = 0.32
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGET 372
V +G PNVGKSS+ N L K+ A VPG T
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVT 36
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 33.2 bits (77), Expect = 0.22
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 339 SVGFIGYPNVGKSSIINALRNKKV 362
G +G PNVGKS++ NAL +
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGI 27
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.4 bits (74), Expect = 0.22
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 323 NLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMR 382
L + Q S+ G N GK+S++ L V T Y
Sbjct: 36 KLGGGSGGGGS--YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDG--S 91
Query: 383 RIYLIDCPG 391
+ L+D PG
Sbjct: 92 GVTLVDFPG 100
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 32.8 bits (76), Expect = 0.27
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 339 SVGFIGYPNVGKSSIINALRNKKV 362
+VG +G PNVGKS++ NAL
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRANA 26
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 32.6 bits (75), Expect = 0.31
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 280 ILNKVDLVPIWVTQRWVAILSKEYPTI---AFHASMTHPFGKGSIINLLRQFSKLHTERK 336
+LNK+DL+ +V Y I S G + L
Sbjct: 166 VLNKIDLLDD-EGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTG--------- 215
Query: 337 QISVGFIGYPNVGKSSIINAL 357
+IS+ F G VGKSS++NAL
Sbjct: 216 RISI-FAGQSGVGKSSLLNAL 235
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 32.1 bits (72), Expect = 0.37
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 334 ERKQISVGF------IGYPNVGKSSIINALRNKKVCKTAPVPG-ETKVWQYITLMRRIYL 386
RK + GF +G +GKS++IN+L + + G K+ + + +
Sbjct: 9 HRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVE 68
Query: 387 IDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERI 430
I+ GV +T V DT + + + YID ER
Sbjct: 69 IEERGVKLRLTVV--DTPGYGDAINCRDCFKTIISYIDEQFERY 110
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 32.2 bits (74), Expect = 0.44
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKV 362
+ +G +G PNVGKS+ +A V
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDV 25
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 31.9 bits (72), Expect = 0.49
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 242 DSSDVVVYVLDV----RDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVP 288
V+++V DV A LR+ P +F +L+K+DLV
Sbjct: 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 31.3 bits (71), Expect = 0.51
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPG 391
Q S+ G N GK+S++ L V T Y + L+D PG
Sbjct: 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDG--SGVTLVDFPG 64
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 31.3 bits (72), Expect = 0.70
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 340 VGFIGYPNVGKSSIINAL 357
+G +G PNVGKS+ N L
Sbjct: 25 IGIVGLPNVGKSTFFNVL 42
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 30.7 bits (70), Expect = 0.74
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 324 LLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAP 367
L +K + F+G N GK+++++ L++ ++ + P
Sbjct: 12 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP 55
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 30.7 bits (70), Expect = 0.74
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 324 LLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAP 367
F KL K++ + +G GK++I+ L+ +V T P
Sbjct: 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKP 48
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 31.3 bits (72), Expect = 0.78
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 340 VGFIGYPNVGKSSIINAL 357
G +G PNVGKS+ A+
Sbjct: 23 TGIVGMPNVGKSTFFRAI 40
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.9 bits (69), Expect = 0.98
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 320 SIINLLRQFSKLHTERKQISVGF------IGYPNVGKSSIINALRNKKVCKTAPVPGETK 373
NL Q RK + GF +G +GKS++IN+L + +
Sbjct: 13 GFANLPNQV-----YRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHR 67
Query: 374 VWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERI 430
+ + + + + LI GV +T V DT V + YID+ E
Sbjct: 68 IKKTVQVEQSKVLIKEGGVQLLLTIV--DTPGFGDAVDNSNCWQPVIDYIDSKFEDY 122
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 29.9 bits (68), Expect = 1.2
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 324 LLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAP 367
LL K+ + +++ + +G N GK++I+ + V +P
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISP 48
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 30.2 bits (68), Expect = 1.6
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 313 THPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINAL------RNKKV 362
HP + LL + +G G P GKS+ + A KV
Sbjct: 34 RHPRHQALSTQLLDAIMP-YCGNTLR-LGVTGTPGAGKSTFLEAFGMLLIREGLKV 87
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 30.1 bits (68), Expect = 1.6
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 340 VGFIGYPNVGKSSIINAL------RNKKV 362
VG G P VGKS+ I+AL KV
Sbjct: 58 VGITGVPGVGKSTTIDALGSLLTAAGHKV 86
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 30.2 bits (68), Expect = 1.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 340 VGFIGYPNVGKSSIINAL------RNKKV 362
VG G P VGKS+ I AL R +V
Sbjct: 82 VGITGVPGVGKSTAIEALGMHLIERGHRV 110
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.9
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 152 EVRKHERVHVLDTESYESVFGKKKQRKKANLSITN--ESELAALVQTSNENYKEEKDF 207
E ++ +R+ LD S +++ R+KA + + + + + N +K F
Sbjct: 92 EEQR-KRLQELDAASKVM---EQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 29.8 bits (67), Expect = 2.1
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 340 VGFIGYPNVGKSSIINAL------RNKKV 362
VG G P GKS+ I R K+
Sbjct: 77 VGLSGPPGAGKSTFIEYFGKMLTERGHKL 105
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 29.1 bits (66), Expect = 2.3
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 320 SIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAP 367
SI+ L+ +++ + +G N GK++++ L ++ + P
Sbjct: 4 SILRKLKSAPD-----QEVRILLLGLDNAGKTTLLKQLASEDISHITP 46
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 29.1 bits (66), Expect = 2.3
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 320 SIINLLRQ-FSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAP 367
I R + L K + F+G N GK+++++ L+N ++ P
Sbjct: 5 DIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQP 53
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 29.1 bits (66), Expect = 2.9
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 323 NLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYIT 379
+L + L + ++I V +G N GK+SI+ L V T P G ET ++ I+
Sbjct: 9 SLKQTLGLLPAD-RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNIS 67
Query: 380 L----------MR---RIYLIDCPGVVY 394
+R R Y D V+Y
Sbjct: 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIY 95
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding,
carbohydrate binding, sugar binding protein; NMR
{Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Length = 106
Score = 27.8 bits (62), Expect = 3.0
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 12/52 (23%)
Query: 398 NVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTED 449
+ D G + V+NI KKV +V G D W + +
Sbjct: 13 SYNYD-GSTFSGKIYVKNIAYS-----------KKVTVVYADGSDNWNNNGN 52
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 28.8 bits (65), Expect = 3.1
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 321 IINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAP 367
+ R F+ ++ V +G N GK++I+ +V T+P
Sbjct: 5 FTRIWRLFNH-----QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP 46
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 29.4 bits (65), Expect = 3.9
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 340 VGFIGYPNVGKSSIINAL--RNKKVCKTAPVP 369
V G + GK+S I L + + P P
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEP 99
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol
metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB:
1gn0_A
Length = 108
Score = 27.6 bits (62), Expect = 4.0
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 236 ELYKVIDSSDVVVYVLDVRDPMGTRCAHIEN 266
+ ++ + + V+ +D+RDP H
Sbjct: 11 DAHQKLQEKEAVL--VDIRDPQSFAMGHAVQ 39
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 28.2 bits (63), Expect = 5.0
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGE-TKVWQYITLMRRIY-LIDCPG 391
Q +V F+G + GK+ + L + T + + +++ LID PG
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPG 63
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 28.7 bits (65), Expect = 5.3
Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 20/136 (14%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYD 395
K I++ G NVG +++ +R+ + ID V+
Sbjct: 5 KTINLSIFGLGNVG-LNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISY 63
Query: 396 MTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLA 455
D+ + D D V++ + + F K+
Sbjct: 64 KEKGSLDSLEYESISASEALARD----FDIVVDAT--------PASADGKKELAFYKE-T 110
Query: 456 FKWGKIKKKGEPVITA 471
F+ GK V+TA
Sbjct: 111 FENGK------DVVTA 120
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 27.9 bits (63), Expect = 5.3
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 374 VWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKK 432
+I R ++ID G++ + + N +++ L+ +K+
Sbjct: 104 AKGFILPARITFVIDKKGII----------RHIYNSQMNPAN------HVNEALKALKQ 146
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.15A {Planctomyces limnophilus}
Length = 290
Score = 28.2 bits (63), Expect = 5.9
Identities = 3/20 (15%), Positives = 10/20 (50%)
Query: 416 IDDPVQYIDAVLERIKKVHL 435
+P++ + V ++ +H
Sbjct: 193 TGNPIEALRKVARYVRSIHC 212
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.5 bits (63), Expect = 6.0
Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 13/116 (11%)
Query: 321 IINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYIT- 379
++ LL + + ++ V +G P GKS+I L K E +
Sbjct: 11 VLQLLDNRIE---DNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVND 67
Query: 380 -------LMRRIYLIDCPGVVYDMTNVETDTEKVLRGVV-RVENIDDPVQYIDAVL 427
L+ + + V +M + + + V + +
Sbjct: 68 RLKPMVNLVDSLKTLQPNKVA-EMIENQGLFKDHVEDVNFQPVKYSALTSNNEECT 122
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 28.0 bits (63), Expect = 6.6
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 328 FSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAP 367
FS++ +KQ+ + +G GK++I+ L+ ++ T P
Sbjct: 21 FSRIF-GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,176,096
Number of extensions: 501876
Number of successful extensions: 1544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1504
Number of HSP's successfully gapped: 112
Length of query: 534
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 436
Effective length of database: 3,965,535
Effective search space: 1728973260
Effective search space used: 1728973260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)