RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6781
(534 letters)
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 176 bits (448), Expect = 3e-52
Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 19/273 (6%)
Query: 236 ELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRW 295
E+ + + D+V ++D R PM +R IE+ L+ +K +LNK D VTQ+W
Sbjct: 8 EVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKADAAVTQQW 63
Query: 296 VAILSKEY-------PTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNV 348
+ + P K + + + + I IG PNV
Sbjct: 64 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNV 123
Query: 349 GKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEK-VL 407
GKS++IN L K + KT PG T Q++ + + + L+D PG+++ E + +
Sbjct: 124 GKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAV 183
Query: 408 RGVVR--VENIDDPVQYIDAVLERIKKVHLVKTYGIDEW-EDTEDFLKKLAFKWGKIKKK 464
G ++ + N+ D + LE L + YG+DE ED + + K G +
Sbjct: 184 TGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGCLMSG 243
Query: 465 GEPVITASAKMVLNDWQRGKLPYYTVPEGFEVP 497
G + ++++ D + K + FE P
Sbjct: 244 GLINYDKTTEVIIRDIRTEKFGRLS----FEQP 272
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 59.7 bits (144), Expect = 8e-11
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 15/155 (9%)
Query: 245 DVVVYVLDVRDPMGTRCAHIENFL-RREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEY 303
D V V P A ++ FL E + K+DL+ T+ + +++Y
Sbjct: 12 DQAVLVFSAVQPS-FSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY 70
Query: 304 PTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVC 363
I + +T + S+ + + + + F G VGKSS++NA+ +
Sbjct: 71 RNIGYDVYLTSSKDQDSL-------ADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGL 123
Query: 364 KTAPVPGETKVWQYITLMRRIY------LIDCPGV 392
+T + ++ T + + D PG
Sbjct: 124 RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGF 158
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 56.5 bits (135), Expect = 5e-10
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 6/145 (4%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV----WQYITLMRRIYLIDCPGVVYD 395
VG +G+P+VGKS++++ + + K K A T V R + D PG++
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
Query: 396 MTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLA 455
+ LR + R I + + + R + + +
Sbjct: 63 AHQGVGLGHQFLRHIERTRVIVHVI-DMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 121
Query: 456 FKWGKIKKKGEPVITASAKMVLNDW 480
K+ + K L D
Sbjct: 122 IVANKMDMPEAAENLEAFKEKLTDD 146
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 55.4 bits (132), Expect = 1e-09
Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 13/148 (8%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKV---WQYITLMRRIYLIDCPGVVYDM 396
VG +GYPN GKSS++ A+ ++ R L D PG++
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 397 TNVETDTEKVLRGV--------VRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTE 448
+ + + LR + V + E + +
Sbjct: 64 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123
Query: 449 DFL--KKLAFKWGKIKKKGEPVITASAK 474
D L + + + ++G V+ SA
Sbjct: 124 DLLEEEAVKALADALAREGLAVLPVSAL 151
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 54.3 bits (129), Expect = 3e-09
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 9/162 (5%)
Query: 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTN 398
++ F G NVGKS++I L KKV + PG T+ I ID PG + M
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEWKNHKI-IDMPGFGFMMGL 59
Query: 399 VETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFKW 458
+ E++ +V + + ++ K I + + + +
Sbjct: 60 PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAP-----EIIKRWEKRGEIPIDVEFY 114
Query: 459 GKIKKKGEPVITASAKMVLNDWQRGKLPYYTVPEGFEVPLSK 500
+++ P I A K+ + + + E FEVPLS+
Sbjct: 115 QFLRELDIPTIVAVNKLDKIKNVQEVINFLA--EKFEVPLSE 154
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 52.8 bits (125), Expect = 1e-08
Identities = 20/147 (13%), Positives = 54/147 (36%), Gaps = 12/147 (8%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMR-----------RIYLID 388
+ +G PNVGKS+++N L +K+ T+ T+ +++ +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 389 CPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTE 448
+ M + + + V+ V + VL ++++ +++ ++ +
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127
Query: 449 DFLKKLAFKW-GKIKKKGEPVITASAK 474
+ L + ++ SA+
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAE 154
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 51.1 bits (121), Expect = 3e-08
Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMT 397
+ + +G PNVGKS+++N L N+ +PG + I + + D
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG----TTRDVISEEIVIRGILFRIVDTA 56
Query: 398 NVETDTEKVLRG---------------VVRVENIDDPVQYIDAVLERIKKVHLVKTYGID 442
V ++T ++ V+ V + P+ D + K
Sbjct: 57 GVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINK 116
Query: 443 EWEDTEDFLKKLAFKWGKIKKKGEPVITASAK 474
+ +++ K G ++ SA
Sbjct: 117 VDVVEKINEEEIKNKLG----TDRHMVKISAL 144
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 49.7 bits (117), Expect = 9e-08
Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 7/144 (4%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPG---ETKVWQYITLMRRIYLIDCPGVVY 394
+ V G PN GKSS++NAL ++ + G + +++ID G+
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 395 DMTNVETD----TEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDF 450
VE + + RV + D I + + +
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 451 LKKLAFKWGKIKKKGEPVITASAK 474
G + G +I SA+
Sbjct: 122 ADITGETLGMSEVNGHALIRLSAR 145
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 49.8 bits (117), Expect = 1e-07
Identities = 22/147 (14%), Positives = 42/147 (28%)
Query: 334 ERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393
I V F G N GKSS +N L N+K + + +
Sbjct: 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY 72
Query: 394 YDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKK 453
E K R + +Q + +++ + + I+ D+ +
Sbjct: 73 GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 132
Query: 454 LAFKWGKIKKKGEPVITASAKMVLNDW 480
L K K+ + + +
Sbjct: 133 LLTKADKLASGARKAQLNMVREAVLAF 159
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 49.4 bits (116), Expect = 1e-07
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDM 396
V +G PNVGKS+++N L KV +P P T+ L I
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLH 64
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 49.0 bits (115), Expect = 2e-07
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCP 390
V +G PNVGKS++ N L KK G T+ T+
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLV 53
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 51.3 bits (122), Expect = 2e-07
Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 14/137 (10%)
Query: 334 ERKQISVGFIGYPNVGKSSIINALRNKKVC-KTAPVPGETKVWQYITLM-----RRIYLI 387
+ ++V G GKSS IN LR + A G +V +
Sbjct: 53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112
Query: 388 DCPGVVYDMTNVETDTEKV--LRGVVRVENIDDPVQYIDAVL-----ERIKKVHLVKTYG 440
D PG+ +T EK+ + + D + K+ + V+T
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRT-K 171
Query: 441 IDEWEDTEDFLKKLAFK 457
+D E + F
Sbjct: 172 VDSDITNEADGEPQTFD 188
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 49.3 bits (117), Expect = 3e-07
Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 13/154 (8%)
Query: 245 DVVVYVLDVRDPMGTRCAHIENFL-RREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEY 303
D V+ V+ V+ P T I+ FL EK ++NK+DL ++ +
Sbjct: 12 DQVILVVTVKMPE-TSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 70
Query: 304 PTIA-FHASMTHPFGKGSIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKV 362
S G + L K G VGKSS++NA+
Sbjct: 71 GLYPIVKTSAKTGMGIEELKEYL----------KGKISTMAGLSGVGKSSLLNAINPGLK 120
Query: 363 CKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDM 396
+ + V + + ++ T ++ D G V D
Sbjct: 121 LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDT 154
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 49.0 bits (116), Expect = 5e-07
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
Query: 323 NLLRQFSKLHTERKQ-ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM 381
LL L E +++ +G VGKSS +N++ ++V +P E ++
Sbjct: 17 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS 76
Query: 382 RRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYI 423
R + ++ + + L + +
Sbjct: 77 RAGFTLNI-IDTPGLIEGGYINDMALNIIKSFLLDKTIDVLL 117
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 47.8 bits (112), Expect = 6e-07
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM---RRIYLIDCPG 391
I V +G PNVGKS++ NA+ NK+ +P+PG T+ + R+ +D G
Sbjct: 6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65
Query: 392 VVYDM 396
+
Sbjct: 66 LRRKS 70
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 45.6 bits (107), Expect = 7e-06
Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 32/159 (20%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGET----------------KVWQYITLM 381
+ G +G PNVGKS+ A+ + A P T + +
Sbjct: 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPK 70
Query: 382 RRIY----LIDCPGVVYDMTNVETDTEKVLRG---------VVRV---ENIDDPVQYIDA 425
R+ + D G+ + L VVR I +D
Sbjct: 71 SRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDP 130
Query: 426 VLERIKKVHLVKTYGIDEWEDTEDFLKKLAFKWGKIKKK 464
+ + V + + E + L+K+ + +
Sbjct: 131 IRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEM 169
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 44.4 bits (103), Expect = 9e-06
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 340 VGFIGYPNVGKSSIINALRN-KKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTN 398
+ G NVGKSS IN+L N K + +T+ PG+T+ + + ++ +D PG + +
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS 85
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 42.7 bits (99), Expect = 3e-05
Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY----ITLMRRIYLIDCPGVVY 394
S+ G N GK+S++ L V T Y +TL+ + +
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLS 64
Query: 395 DMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKV 433
D K L +V + L I +
Sbjct: 65 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 103
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 40.8 bits (94), Expect = 9e-05
Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 11/148 (7%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYD 395
+++ + +G N GK++I+ + V +P G + I G
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLN--IWDVGGQKS 58
Query: 396 MTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIK---------KVHLVKTYGIDEWED 446
+ + + + G++ V + D + D E L+ D
Sbjct: 59 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118
Query: 447 TEDFLKKLAFKWGKIKKKGEPVITASAK 474
+ A + I+ + SA
Sbjct: 119 LSCNAIQEALELDSIRSHHWRIQGCSAV 146
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 41.1 bits (95), Expect = 1e-04
Identities = 20/159 (12%), Positives = 42/159 (26%), Gaps = 8/159 (5%)
Query: 324 LLRQFSKL-HTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGET-------KVW 375
LL KL +++ + +G N GK++++ L ++ + P G
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61
Query: 376 QYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHL 435
+ + I Y R E + + + L
Sbjct: 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL 121
Query: 436 VKTYGIDEWEDTEDFLKKLAFKWGKIKKKGEPVITASAK 474
+ D I+ + + + SA
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSAL 160
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 41.4 bits (96), Expect = 2e-04
Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 41/160 (25%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGET--------------------------- 372
+G +G PNVGKS+ +A V + A P T
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 373 KVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKK 432
++ + + ++D G+V K L + + +DA
Sbjct: 62 YEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASA---LIHVVDA--TGKTD 116
Query: 433 VHLVKTYGIDEWEDTEDFLKKLAF--------KWGKIKKK 464
T D ED E +++ + W K K+
Sbjct: 117 PEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKR 156
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 39.7 bits (91), Expect = 3e-04
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI 378
+++ + +G GK++I+ L+ +V T P G
Sbjct: 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTY 46
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 39.6 bits (91), Expect = 3e-04
Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 16/161 (9%)
Query: 323 NLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGET---------K 373
+ R F+ ++ V +G N GK++I+ +V T+P G +
Sbjct: 6 RIWRLFNH-----QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 60
Query: 374 VWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKV 433
+ + + V + R + V + L + +
Sbjct: 61 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 120
Query: 434 HLVKTYGIDEWEDTEDFLKKLAFKWGKIKKKGEPVITASAK 474
+ E + + L IK + A
Sbjct: 121 IFANKQDVKECMTVAEISQFLKLTS--IKDHQWHIQACCAL 159
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 39.5 bits (92), Expect = 6e-04
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGET 372
G +G PNVGKS++ NAL + + A P T
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCT 36
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 38.4 bits (88), Expect = 8e-04
Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 13/157 (8%)
Query: 328 FSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLI 387
F KL K++ + +G GK++I+ L+ +V T P G V ++ +
Sbjct: 8 FDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG-FNVETLSYKNLKLNVW 66
Query: 388 DCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYI----------DAVLERIKKVHLVK 437
D G + V++ D + L+ +
Sbjct: 67 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 126
Query: 438 TYGIDEWEDTEDFLKKLAFKWGKIKKKGEPVITASAK 474
+ K+L +K + ++ +SA
Sbjct: 127 KQDQPGALSASEVSKELNLVE--LKDRSWSIVASSAI 161
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 38.1 bits (87), Expect = 9e-04
Identities = 24/178 (13%), Positives = 60/178 (33%), Gaps = 12/178 (6%)
Query: 328 FSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLI 387
L +K + F+G N GK+++++ L++ ++ + P T + +T+ +
Sbjct: 4 LQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELTIAGMTFTT 61
Query: 388 DCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDT 447
G V + + G+V + + D + +++ E + +
Sbjct: 62 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121
Query: 448 EDFLKKLAFKWGKIKKK--GEPVITASAKMVLNDWQRGKLPYYT--------VPEGFE 495
+ A ++++ T + L + L + EGF
Sbjct: 122 NKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 38.5 bits (88), Expect = 0.001
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 339 SVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPG 391
+V F+G + GK+ + L + T ++ + R L
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDL 54
Score = 26.9 bits (58), Expect = 5.3
Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 3/118 (2%)
Query: 209 IVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFL 268
V +N G + D ++ + VV + + + L
Sbjct: 40 KVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVL 99
Query: 269 RRE---KPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIIN 323
K L NK D+ + L KE T+ S S
Sbjct: 100 IDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 157
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 37.4 bits (85), Expect = 0.002
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI 378
+ F+G N GK+++++ L+N ++ P T I
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAI 41
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 35.8 bits (81), Expect = 0.004
Identities = 17/151 (11%), Positives = 46/151 (30%), Gaps = 16/151 (10%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKV------------CKTAPVPGETKVWQYITLMRR 383
+++ + +G GK++ +N + + + K K+W R
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 384 IYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDE 443
+ + D + + + + L+ I + L +
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQGIPVLVLGNKRDLPG 118
Query: 444 WEDTEDFLKKLAFKWGKIKKKGEPVITASAK 474
D ++ ++K+ I+ + + S K
Sbjct: 119 ALDEKELIEKMNLSA--IQDREICCYSISCK 147
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 34.6 bits (78), Expect = 0.010
Identities = 14/144 (9%), Positives = 43/144 (29%), Gaps = 7/144 (4%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKTAP---VPGETKVWQYITLMRRIYLIDCPGVVY 394
+ + +G GK++I+ L+ ++ T P ET ++ I+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 395 DMTNVETDTEKVLRGVVRVENIDDPV--QYIDAVLERIKKVHLVKTYGIDEWEDTEDFLK 452
+ + + + + + E + ++ + +
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 453 KLAFKWG--KIKKKGEPVITASAK 474
++ K G ++ + + A
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCAT 144
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 33.3 bits (75), Expect = 0.032
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)
Query: 338 ISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITL---MRRIYLIDCPGVV 393
+ + IG VGKSS++ + + A G + I++ ++ + D G
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG-Q 66
Query: 394 YDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVH---------LVKTYGIDEW 444
+ + +GV+ V ++ ++ + ++ ID+
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 126
Query: 445 EDTEDFLKKLAFKWGKIKKKGEPVITASAK 474
D + L F +K I ASAK
Sbjct: 127 NREVDRNEGLKF----ARKHSMLFIEASAK 152
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 33.1 bits (74), Expect = 0.038
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 334 ERKQISVGFIGYPNVGKSSIINALR 358
+ K I++G G+ + GK+++ L
Sbjct: 2 DFKNINLGIFGHIDHGKTTLSKVLT 26
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 33.1 bits (74), Expect = 0.038
Identities = 24/144 (16%), Positives = 41/144 (28%), Gaps = 7/144 (4%)
Query: 338 ISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCP--GVVY 394
I + +G VGKSS+I + G + + I + +
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 395 DMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLK-- 452
+ + + + V V + D + R K V V ++ D L
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS 122
Query: 453 --KLAFKWGKIKKKGEPVITASAK 474
K G K+ S K
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVK 146
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 32.4 bits (72), Expect = 0.063
Identities = 11/55 (20%), Positives = 17/55 (30%)
Query: 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDM 396
+G P VGKS++ + A G T + L+ D
Sbjct: 6 LLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 32.2 bits (72), Expect = 0.070
Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 18/161 (11%)
Query: 324 LLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRR 383
L + F K++ + +G GK++I+ L+ + T P G ++
Sbjct: 4 LSKIFGN-----KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKF 58
Query: 384 IYLIDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLE----------RIKKV 433
+ G + + +G++ V + D + +A E R +
Sbjct: 59 N--VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
Query: 434 HLVKTYGIDEWEDTEDFLKKLAFKWGKIKKKGEPVITASAK 474
+ +++ +I+ + V + A
Sbjct: 117 LIFANKQDLPDAMKPHEIQE-KLGLTRIRDRNWYVQPSCAT 156
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.9 bits (71), Expect = 0.10
Identities = 13/147 (8%), Positives = 33/147 (22%), Gaps = 9/147 (6%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYD 395
++ +G +G GKSS+I+ E + + + ++
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 396 MTNVETDTEKVL-----RGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGI---DEWEDT 447
+ V+ + + + ++ + + G
Sbjct: 64 DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123
Query: 448 EDFLKKLAFKWGKIKKKGEPVITASAK 474
A K A
Sbjct: 124 RVVGDARARALCA-DMKRCSYYETCAT 149
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.9 bits (71), Expect = 0.11
Identities = 15/121 (12%), Positives = 30/121 (24%), Gaps = 11/121 (9%)
Query: 340 VGFIGYPNVGKSSIINAL------RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV 393
+ F + GK++++ L R + + + L
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD--MDVDKPGKDSYELRKAGA-- 60
Query: 394 YDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKK 453
T V + L E D + + LV+ + +E F
Sbjct: 61 -AQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDG 119
Query: 454 L 454
Sbjct: 120 A 120
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.3 bits (70), Expect = 0.14
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITLMRRIY---LIDCPG 391
+ + IG VGKS ++ K + G + + + + + D G
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 31.5 bits (70), Expect = 0.16
Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 4/160 (2%)
Query: 200 NYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGT 259
Y+ + + D + + ++ K + V V D +
Sbjct: 40 QYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRE 99
Query: 260 RCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKG 319
R A I NF + FF+ + + L T F
Sbjct: 100 RRAMIFNFGEQNGYK--TFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDF-MR 156
Query: 320 SIINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRN 359
I + E + + +I +VG+S ++N + +
Sbjct: 157 RIECYENSYES-LDEEQDRDLSYIKIMDVGQSYVVNRVAD 195
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 31.4 bits (70), Expect = 0.17
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 336 KQISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394
++ V +G VGKS++ + K P + + L
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 395 DMTNVETD 402
+ D
Sbjct: 62 EQFASMRD 69
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 31.4 bits (70), Expect = 0.17
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 342 FIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMR---RIYLIDCPG 391
IG +VGK+S + + G + I ++ + D G
Sbjct: 10 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 31.1 bits (69), Expect = 0.19
Identities = 10/101 (9%), Positives = 26/101 (25%), Gaps = 1/101 (0%)
Query: 334 ERKQISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGV 392
+ I +G VGK+ ++ + N + P + + + + L
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 393 VYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKV 433
+ + V + + V +
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE 102
>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase
8, USP8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 30.6 bits (68), Expect = 0.20
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 236 ELYKVIDSSDVVVYVLDVRDPMGTRCAHIEN 266
ELY ++ ++ + ++D R + + I +
Sbjct: 7 ELYTMMTDKNISLIIMDARRMQDYQDSCILH 37
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 130
Score = 30.3 bits (67), Expect = 0.21
Identities = 11/65 (16%), Positives = 16/65 (24%)
Query: 236 ELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRW 295
L + D D Y+LDVR P H+ V
Sbjct: 29 GLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVASVRGARLVLVDD 88
Query: 296 VAILS 300
+ +
Sbjct: 89 DGVRA 93
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 31.1 bits (70), Expect = 0.26
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 19/83 (22%)
Query: 338 ISVGFIGYPNVGKSSIINAL-----------RNKKVCKTAPVPGE--------TKVWQYI 378
++VG IG+ + GK+++ AL K P E T +Y
Sbjct: 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE 63
Query: 379 TLMRRIYLIDCPGVVYDMTNVET 401
T R +DCPG + N+ T
Sbjct: 64 TAKRHYSHVDCPGHADYIKNMIT 86
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 30.7 bits (68), Expect = 0.27
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 1/100 (1%)
Query: 336 KQISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394
+ I +G VGK+ ++ + NK + P + + L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 395 DMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVH 434
+ + V V + V E+
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 30.8 bits (68), Expect = 0.29
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 338 ISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDC 389
+ V +G VGK+S++N K + G + + + + R+ +
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 55
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.5 bits (68), Expect = 0.31
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 342 FIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITLMRRIY---LIDCPG 391
IG VGK+ ++ G + + + + + D G
Sbjct: 10 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 30.1 bits (67), Expect = 0.37
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 342 FIGYPNVGKSSIINALRNKKVCKT-APVPGETKVWQYITLMRRIY---LIDCPG 391
IG VGK+ ++ T G + I L + + D G
Sbjct: 11 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 30.2 bits (67), Expect = 0.39
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 342 FIGYPNVGKSSIINALRNKKVCK----TAPVPGETKVWQYITLMRRIYLIDCPG 391
IG VGKS ++ + T V + K + ++ + D G
Sbjct: 11 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 64
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.8 bits (66), Expect = 0.44
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 342 FIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITL---MRRIYLIDCPG 391
IG VGKS++++ + ++ G + I + + + D G
Sbjct: 9 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 62
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 29.6 bits (65), Expect = 0.56
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 336 KQISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVY 394
+ + +G VGKS++ L +N V + P ++ Q + L
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 395 DMTNVETD 402
+ + D
Sbjct: 62 EEYSAMRD 69
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.6 bits (65), Expect = 0.57
Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 14/150 (9%)
Query: 342 FIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVE 400
IG NVGK+ + + +T G + + + I +
Sbjct: 7 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 66
Query: 401 TDTEKVLRG------VVRVENIDDPVQYIDAVLERI-----KKVHLVKTYGIDEWEDTED 449
+ + R V + N+ + E + + +
Sbjct: 67 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ 126
Query: 450 FLKKLAFKWGKIKKKGEPVITASAKMVLND 479
LA K+ P+ SAK ++
Sbjct: 127 VPTDLAQKF--ADTHSMPLFETSAKNPNDN 154
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 29.6 bits (65), Expect = 0.63
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKK 361
+++ V +G VGKSSI+
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDS 28
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 29.5 bits (65), Expect = 0.74
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVC 363
+++ + +G GKS+ I +R
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIHGS 28
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 29.3 bits (64), Expect = 0.74
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 338 ISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLM 381
+ V +G VGK+S+++ +K + G + + +T+
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD 47
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli
[TaxId: 562]}
Length = 108
Score = 28.5 bits (63), Expect = 0.82
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 236 ELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFF 279
+ ++ + + V+ +D+RDP H F
Sbjct: 11 DAHQKLQEKEAVL--VDIRDPQSFAMGHAVQAFHLTNDTLGAFM 52
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 29.3 bits (64), Expect = 0.82
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 334 ERKQISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGV 392
+ K + +GY +VGKSS+ + V P T + +L
Sbjct: 1 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTA 60
Query: 393 VYDM 396
D
Sbjct: 61 GQDE 64
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.8 bits (63), Expect = 0.94
Identities = 6/54 (11%), Positives = 20/54 (37%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDC 389
++ + +G VGKS++ + E + + + + +++
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEI 55
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 29.3 bits (65), Expect = 0.97
Identities = 9/51 (17%), Positives = 17/51 (33%)
Query: 335 RKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIY 385
R + +G GKS+I+ +R V T+ + +
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMFDV 54
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.4 bits (65), Expect = 1.1
Identities = 14/69 (20%), Positives = 18/69 (26%), Gaps = 8/69 (11%)
Query: 335 RKQISVGFIGYPNVGKSSIINAL------RNKKVCKTAPVPGETKVWQYI--TLMRRIYL 386
+ +G G P GKS+ + A KV A P I R L
Sbjct: 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDL 111
Query: 387 IDCPGVVYD 395
Sbjct: 112 ARAEAAFIR 120
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 29.1 bits (64), Expect = 1.1
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 342 FIGYPNVGKSSIINALRNKK-VCKTAPVPGETKVWQYITLMRRIYLIDC 389
+G VGK++ + + K K G + + +
Sbjct: 10 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 58
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 29.3 bits (64), Expect = 1.1
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 340 VGFIGYPNVGKSSIINALRNKKV 362
V +G+ + GK+++++ +R V
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAV 30
Score = 27.7 bits (60), Expect = 2.7
Identities = 8/81 (9%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
Query: 221 RDWVMAAGQSKRIWGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFI 280
+ + + + +D+ + ++D+ + G + E
Sbjct: 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE--GFKPQTQEALNILRMYRTPFVVA 128
Query: 281 LNKVDLVPIWVTQRWVAILSK 301
NK+D + W +
Sbjct: 129 ANKIDRIHGWRVHEGRPFMET 149
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 28.8 bits (64), Expect = 1.2
Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 66/204 (32%)
Query: 338 ISVGFIGYPNVGKSSIINAL----------RNKKVCKTAPVPGE--------TKVWQYIT 379
++VG IG+ + GK+++ A+ + KK + P E +Y T
Sbjct: 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST 63
Query: 380 LMRRIYLIDCPGVVYDMTNVETD--------------------TEKVLR--------GVV 411
R DCPG + N+ T T + L VV
Sbjct: 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVV 123
Query: 412 RVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFKWGKIKKKGEPVITA 471
N D VQ ++E ++ + + L + +K + P+I
Sbjct: 124 VYVNKADAVQD-SEMVELVEL-------------EIRELLTEFGYKGEET-----PIIVG 164
Query: 472 SAKMVLNDWQRGKLPYYTVPEGFE 495
SA L +L +V + +
Sbjct: 165 SALCALEQRD-PELGLKSVQKLLD 187
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 29.2 bits (64), Expect = 1.2
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 340 VGFIGYPNVGKSSIINALRNKKV 362
V F+G GK+++
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLE 25
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.7 bits (63), Expect = 1.3
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLM----RRIYLIDCPG 391
IG GKS +++ KK + + I + ++ + D G
Sbjct: 10 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 28.4 bits (62), Expect = 1.3
Identities = 10/98 (10%), Positives = 30/98 (30%), Gaps = 1/98 (1%)
Query: 337 QISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYD 395
+ + +G GK+ ++ +++ P E V +++ L +
Sbjct: 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE 61
Query: 396 MTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKV 433
+ V+ + D ++ + E+
Sbjct: 62 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 99
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 28.3 bits (62), Expect = 1.4
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 340 VGFIGYPNVGKSSIINAL 357
+GY + GK++++
Sbjct: 4 WQVVGYKHSGKTTLMEKW 21
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 28.4 bits (62), Expect = 1.4
Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 38/156 (24%)
Query: 342 FIGYPNVGKSSIINALRNKK----------------------VCKTAPVPGETKVWQYIT 379
+G VGK+S++ K + ++
Sbjct: 8 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA 67
Query: 380 LMRRIYL-IDCPGVVYDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKT 438
L Y + +VYD+T+ ++ + + + V+ + +L + +V
Sbjct: 68 LGPIYYRDSNGAILVYDITDEDS-----------FQKVKNWVKELRKMLGNEICLCIVGN 116
Query: 439 YGIDEWEDTEDFLKKLAFKWGKIKKKGEPVITASAK 474
E E + ++ + G SAK
Sbjct: 117 KIDLEKERHVSIQEAESY----AESVGAKHYHTSAK 148
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 28.1 bits (62), Expect = 1.5
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 337 QISVGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDM 396
++V IG N+GK ++ +K+ + + + + + V +
Sbjct: 2 HMTVLIIGMGNIGK-KLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVS---TVVEC 57
Query: 397 TNVETDTEKVLRGVVRVENI 416
+ E E L+ + N
Sbjct: 58 ASPEAVKEYSLQILKNPVNY 77
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 28.4 bits (63), Expect = 1.6
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 33/101 (32%)
Query: 334 ERKQISVGFIGYPNVGKSSIINAL---------------------------RNKKVCKTA 366
E+ I+V IG+ + GKS+ L + V
Sbjct: 3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKL 62
Query: 367 PVPGE------TKVWQYITLMRRIYLIDCPGVVYDMTNVET 401
E +W++ T ++ +ID PG + N+ T
Sbjct: 63 KAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMIT 103
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 28.4 bits (62), Expect = 1.6
Identities = 18/138 (13%), Positives = 36/138 (26%), Gaps = 4/138 (2%)
Query: 224 VMAAGQSKRIWGELYKV---IDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFI 280
V+A G+++R G + K ++ + +V D + N + L I
Sbjct: 8 VLAGGKARR-MGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIYQASGLKVI 66
Query: 281 LNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINLLRQFSKLHTERKQISV 340
+ + P + + + F T L Q
Sbjct: 67 EDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGE 126
Query: 341 GFIGYPNVGKSSIINALR 358
+ +I L
Sbjct: 127 RDHPTIALVNRAIEPLLL 144
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 27.9 bits (61), Expect = 1.8
Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 222 DWVMAAGQSKRI-WGELYKVIDSSDVVVYVLDVRDPMGTRCAHIENFLRREKPHKHLFFI 280
+ V A + + E+ ++D+ V +LD R + I +
Sbjct: 15 ELVEAERHTPSLAAEEVQALLDARAEAV-ILDARRFDEYQTMSIPGG-----ISVPGAEL 68
Query: 281 LNKVDLVPIWVTQRWVAILSKEYPTIAFHASMTHPFGKGSIINL 324
+ +V + R + + +I S+ + + L
Sbjct: 69 VLRVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAAL 112
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.1 bits (61), Expect = 1.9
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 335 RKQISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIY 385
+++ + +G VGKS++ ++ V P ++ Q + R
Sbjct: 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAAR 54
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 27.9 bits (61), Expect = 2.3
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMR-----RIYLIDCPG 391
+G VGK+ ++ ++ + ++ L ++ + D G
Sbjct: 11 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 27.7 bits (60), Expect = 2.4
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 11/148 (7%)
Query: 338 ISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVV--- 393
I + +G VGKSSI+ N P G + Q +T+ +
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 394 --YDMTNVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKK-----VHLVKTYGIDEWED 446
+ + + V V ++ V E ++ + + ID ++
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123
Query: 447 TEDFLKKLAFKWGKIKKKGEPVITASAK 474
+ ++KG SAK
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAK 151
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.8 bits (60), Expect = 2.5
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 342 FIGYPNVGKSSIINALRNKK 361
IG VGKS++ N
Sbjct: 8 LIGEQGVGKSTLANIFAGVH 27
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 27.6 bits (60), Expect = 2.6
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 342 FIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCP 390
+G VGKS++ ++ V P ++ + + + +
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 58
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 27.6 bits (60), Expect = 2.9
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKKV 362
+++ + +G GKS+I+ ++
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIHE 27
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 27.3 bits (59), Expect = 3.2
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 342 FIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVE 400
+G GK+++++ ++ P E + +RI L +
Sbjct: 7 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 66
Query: 401 TD 402
Sbjct: 67 RP 68
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 27.1 bits (59), Expect = 3.5
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 236 ELYKVIDSSDVVVYVLDVRDPMGTRCAHIEN 266
L + ++ + + ++D R +HIE+
Sbjct: 22 WLNEQLELGNERLLLMDCRPQELYESSHIES 52
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.8 bits (58), Expect = 4.3
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI 378
IG VGKS +++ KK P + I
Sbjct: 9 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI 45
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.2 bits (59), Expect = 4.4
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 336 KQISVGFIGYPNVGKSSIINALR 358
+ + + +G GKS+ + +R
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMR 23
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 26.8 bits (58), Expect = 4.9
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYI 378
+G VGKSS++N K +
Sbjct: 11 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKD 47
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 26.8 bits (58), Expect = 4.9
Identities = 18/141 (12%), Positives = 33/141 (23%), Gaps = 8/141 (5%)
Query: 342 FIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQYITLMRRIYLIDCPGVVYDMTNVET 401
F+G +VGK+S+I T + + +
Sbjct: 5 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS 64
Query: 402 DTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGID--------EWEDTEDFLKK 453
+R + D + G D + + +
Sbjct: 65 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS 124
Query: 454 LAFKWGKIKKKGEPVITASAK 474
+ K K+ I SAK
Sbjct: 125 IEEGERKAKELNVMFIETSAK 145
>d1tq1a_ c.46.1.3 (A:) Thiosulfate
sulfurtransferase/Senescence-associated protein {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 119
Score = 26.4 bits (57), Expect = 5.0
Identities = 8/68 (11%), Positives = 14/68 (20%), Gaps = 5/68 (7%)
Query: 248 VYVLDVRDPMGTRCAHIENFLRREKPHKHLFFILNKVDLVPIWVTQRWVAILSKEYPTIA 307
LDVR P H + + ++ + + I
Sbjct: 23 HRYLDVRTPEEFSQGHACGAI-----NVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIV 77
Query: 308 FHASMTHP 315
S
Sbjct: 78 GCQSGGRS 85
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 27.1 bits (59), Expect = 5.1
Identities = 20/157 (12%), Positives = 48/157 (30%), Gaps = 21/157 (13%)
Query: 321 IINLLRQFSKLHTERKQISVGFIGYPNVGKSSIINALRNKKVCKTAPVP----------- 369
+ ++ + QI V +G + GKSS++ + +
Sbjct: 10 LQDVFNTLGSDPLDLPQIVV--VGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLT 67
Query: 370 -GETKVWQYITLMRRIYLIDCPGVVYDMTNVETDTEKVLRGVV-RVENIDDPVQYIDAVL 427
T +L + YD + + + + + + + I +
Sbjct: 68 HLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYS 127
Query: 428 ERIKKVHLVKTYGI------DEWEDTEDFLKKLAFKW 458
+ + LV GI D+ D E ++++ +
Sbjct: 128 PHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAY 164
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 26.9 bits (58), Expect = 5.4
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 333 TERKQISVGFIGYPNVGKSSIINALR 358
+ + ++++G +G+ + GK+++ AL
Sbjct: 1 SRQAEVNIGMVGHVDHGKTTLTKALT 26
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.6 bits (57), Expect = 5.5
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 336 KQISVGFIGYPNVGKSSIINALRNKK 361
+ + +G VGKS++
Sbjct: 5 ETHKLVVVGGGGVGKSALTIQFIQSY 30
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 26.6 bits (57), Expect = 5.8
Identities = 15/156 (9%), Positives = 36/156 (23%), Gaps = 2/156 (1%)
Query: 340 VGFIGYPNVGKSSIINALRNKKVCKTAPVPGETKVWQY--ITLMRRIYLIDCPGVVYDMT 397
V +G + GKS ++N L +A G V++ Y +
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQR 69
Query: 398 NVETDTEKVLRGVVRVENIDDPVQYIDAVLERIKKVHLVKTYGIDEWEDTEDFLKKLAFK 457
++ + + + +
Sbjct: 70 YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 129
Query: 458 WGKIKKKGEPVITASAKMVLNDWQRGKLPYYTVPEG 493
G + +++ + K+PY +
Sbjct: 130 DGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 165
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 6.3
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 337 QISVGFIGYPNVGKSSIINAL-RNKKVCKTAPVPGETKVWQYITLMRRIYLIDC 389
Q + +G VGKSS++ + + G + Q + L +
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 6.4
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 337 QISVGFIGYPNVGKSSIINALRNKK 361
Q + +G GK++ + +
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGE 27
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 6.8
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 340 VGFIGYPNVGKSSIINALRNKK 361
V G VGKSS++
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGT 26
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 6.9
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 337 QISVGFIGYPNVGKSSIINALRNKK 361
++ + G VGKS+++ K+
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKR 26
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.4 bits (57), Expect = 7.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 342 FIGYPNVGKSSIINALRNKK 361
IG VGKS ++ +K+
Sbjct: 8 IIGDTGVGKSCLLLQFTDKR 27
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 26.4 bits (57), Expect = 8.6
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 330 KLHTERKQISVGFIGYPNVGKSSIINAL 357
K ++ +++ FIG+ + GKS++ +
Sbjct: 17 KDMYGKEHVNIVFIGHVDAGKSTLGGNI 44
>d1fn9a_ d.196.1.1 (A:) Outer capsid protein sigma 3 {Reovirus
[TaxId: 10891]}
Length = 365
Score = 26.5 bits (58), Expect = 8.8
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 229 QSKRIWGELYKVIDSSDVVVYVLDVRDP 256
+ + W L +IDSSD++ + +RDP
Sbjct: 162 KLDQYWTALNLMIDSSDLIPNFM-MRDP 188
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.1 bits (56), Expect = 9.0
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 338 ISVGFIGYPNVGKSSIINALRNKK 361
+ +G VGK+ ++ + N
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDA 33
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 145
Score = 25.7 bits (56), Expect = 9.5
Identities = 16/75 (21%), Positives = 27/75 (36%)
Query: 190 LAALVQTSNENYKEEKDFDIVRDNGGVTDAPRDWVMAAGQSKRIWGELYKVIDSSDVVVY 249
LA L++T + E +DI GV A + ++ +DVV+
Sbjct: 16 LALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLI 75
Query: 250 VLDVRDPMGTRCAHI 264
VR G + +
Sbjct: 76 SAGVRRKPGMDRSDL 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,010,177
Number of extensions: 97464
Number of successful extensions: 462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 115
Length of query: 534
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 444
Effective length of database: 1,171,896
Effective search space: 520321824
Effective search space used: 520321824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)